Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187710 | XP_013468293.1 | 94.572 | 608 | 33 | 0 | 1 | 608 | 1 | 608 | 0.0 | 1142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187710 | sp|Q8VY27|E70H1_ARATH | 44.444 | 567 | 304 | 5 | 40 | 599 | 46 | 608 | 1.28e-151 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187710 | A0A072VW80 | 94.572 | 608 | 33 | 0 | 1 | 608 | 1 | 608 | 0.0 | 1142 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054250 | Msa0187710 | 0.817764 | 2.784253e-52 | -8.615850e-47 |
| Msa0055690 | Msa0187710 | 0.812599 | 3.910275e-51 | -8.615850e-47 |
| Msa0100080 | Msa0187710 | 0.816145 | 6.432037e-52 | -8.615850e-47 |
| Msa0187710 | Msa0680060 | 0.812296 | 4.554210e-51 | -8.615850e-47 |
| Msa0187710 | Msa0764060 | 0.837945 | 3.852988e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187710 | MtrunA17_Chr1g0182031 | 94.572 | 608 | 33 | 0 | 1 | 608 | 1 | 608 | 0.0 | 1142 |
| Msa0187710 | MtrunA17_Chr1g0182041 | 80.496 | 605 | 115 | 2 | 1 | 603 | 1 | 604 | 0.0 | 964 |
| Msa0187710 | MtrunA17_Chr4g0030621 | 47.153 | 562 | 271 | 10 | 40 | 584 | 42 | 594 | 1.92e-159 | 471 |
| Msa0187710 | MtrunA17_Chr2g0327741 | 45.534 | 571 | 271 | 8 | 40 | 599 | 38 | 579 | 2.31e-154 | 456 |
| Msa0187710 | MtrunA17_Chr8g0344461 | 32.397 | 605 | 354 | 13 | 40 | 599 | 9 | 603 | 9.11e-91 | 293 |
| Msa0187710 | MtrunA17_Chr1g0197101 | 29.190 | 531 | 323 | 10 | 100 | 599 | 131 | 639 | 1.60e-75 | 253 |
| Msa0187710 | MtrunA17_Chr4g0057561 | 30.858 | 606 | 350 | 16 | 39 | 599 | 97 | 678 | 2.94e-75 | 253 |
| Msa0187710 | MtrunA17_Chr7g0219041 | 31.931 | 523 | 326 | 10 | 98 | 599 | 151 | 664 | 1.04e-70 | 241 |
| Msa0187710 | MtrunA17_Chr1g0177671 | 28.958 | 518 | 326 | 9 | 100 | 599 | 130 | 623 | 3.28e-69 | 236 |
| Msa0187710 | MtrunA17_Chr3g0106431 | 30.682 | 440 | 288 | 5 | 164 | 599 | 191 | 617 | 1.43e-65 | 226 |
| Msa0187710 | MtrunA17_Chr5g0431731 | 29.213 | 445 | 292 | 6 | 164 | 599 | 201 | 631 | 5.69e-63 | 219 |
| Msa0187710 | MtrunA17_Chr3g0086881 | 28.077 | 520 | 331 | 10 | 101 | 599 | 109 | 606 | 1.10e-60 | 213 |
| Msa0187710 | MtrunA17_Chr6g0462011 | 26.839 | 503 | 355 | 9 | 104 | 599 | 227 | 723 | 7.43e-52 | 190 |
| Msa0187710 | MtrunA17_Chr7g0224041 | 27.714 | 433 | 297 | 9 | 176 | 599 | 223 | 648 | 3.41e-51 | 187 |
| Msa0187710 | MtrunA17_Chr5g0431741 | 27.371 | 464 | 312 | 7 | 149 | 599 | 239 | 690 | 1.91e-47 | 177 |
| Msa0187710 | MtrunA17_Chr5g0432091 | 27.111 | 450 | 313 | 9 | 164 | 603 | 261 | 705 | 4.46e-40 | 155 |
| Msa0187710 | MtrunA17_Chr1g0214001 | 25.090 | 554 | 345 | 15 | 104 | 602 | 130 | 668 | 8.49e-39 | 152 |
| Msa0187710 | MtrunA17_Chr5g0431811 | 27.920 | 351 | 211 | 6 | 164 | 506 | 287 | 603 | 2.00e-35 | 142 |
| Msa0187710 | MtrunA17_Chr5g0432041 | 25.330 | 454 | 290 | 13 | 164 | 599 | 251 | 673 | 2.46e-33 | 135 |
| Msa0187710 | MtrunA17_Chr5g0431761 | 28.070 | 228 | 162 | 2 | 151 | 377 | 246 | 472 | 3.71e-28 | 119 |
| Msa0187710 | MtrunA17_Chr1g0147911 | 23.333 | 510 | 337 | 11 | 103 | 599 | 183 | 651 | 5.46e-26 | 113 |
| Msa0187710 | MtrunA17_Chr5g0431971 | 22.903 | 310 | 215 | 4 | 292 | 599 | 36 | 323 | 2.32e-23 | 101 |
| Msa0187710 | MtrunA17_Chr3g0104851 | 22.198 | 455 | 297 | 14 | 167 | 601 | 251 | 668 | 1.27e-21 | 99.4 |
| Msa0187710 | MtrunA17_Chr1g0152401 | 22.197 | 446 | 299 | 15 | 157 | 570 | 235 | 664 | 4.67e-21 | 97.8 |
| Msa0187710 | MtrunA17_Chr4g0002391 | 23.742 | 497 | 331 | 14 | 74 | 564 | 147 | 601 | 4.31e-20 | 94.7 |
| Msa0187710 | MtrunA17_Chr2g0300651 | 23.919 | 393 | 280 | 8 | 175 | 564 | 224 | 600 | 6.40e-18 | 87.8 |
| Msa0187710 | MtrunA17_Chr5g0431871 | 29.143 | 175 | 110 | 4 | 170 | 336 | 7 | 175 | 2.90e-16 | 77.4 |
| Msa0187710 | MtrunA17_Chr5g0444661 | 23.675 | 283 | 185 | 8 | 258 | 532 | 163 | 422 | 8.68e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187710 | AT3G09520.1 | 49.736 | 569 | 270 | 7 | 40 | 599 | 43 | 604 | 0.0 | 529 |
| Msa0187710 | AT5G59730.1 | 44.519 | 593 | 311 | 5 | 29 | 603 | 8 | 600 | 2.90e-159 | 471 |
| Msa0187710 | AT5G59730.2 | 44.519 | 593 | 311 | 5 | 29 | 603 | 8 | 600 | 4.07e-159 | 470 |
| Msa0187710 | AT2G39380.1 | 43.367 | 588 | 318 | 6 | 20 | 599 | 28 | 608 | 1.71e-158 | 469 |
| Msa0187710 | AT3G09530.1 | 44.518 | 602 | 311 | 11 | 13 | 599 | 7 | 600 | 6.05e-154 | 457 |
| Msa0187710 | AT3G55150.1 | 44.444 | 567 | 304 | 5 | 40 | 599 | 46 | 608 | 1.30e-152 | 454 |
| Msa0187710 | AT2G28640.1 | 41.608 | 572 | 304 | 9 | 40 | 603 | 32 | 581 | 1.07e-134 | 407 |
| Msa0187710 | AT1G07725.1 | 40.309 | 583 | 313 | 11 | 40 | 605 | 32 | 596 | 4.62e-130 | 395 |
| Msa0187710 | AT2G28650.1 | 41.270 | 567 | 281 | 10 | 40 | 599 | 33 | 554 | 4.54e-111 | 345 |
| Msa0187710 | AT3G14090.1 | 28.642 | 604 | 380 | 9 | 40 | 599 | 15 | 611 | 1.57e-83 | 274 |
| Msa0187710 | AT5G50380.1 | 30.139 | 647 | 364 | 17 | 13 | 599 | 51 | 669 | 1.64e-81 | 270 |
| Msa0187710 | AT1G72470.1 | 29.440 | 625 | 356 | 13 | 36 | 599 | 19 | 619 | 1.68e-79 | 264 |
| Msa0187710 | AT1G54090.1 | 29.564 | 619 | 375 | 12 | 30 | 599 | 3 | 609 | 3.30e-75 | 252 |
| Msa0187710 | AT5G52340.1 | 30.545 | 514 | 321 | 8 | 100 | 599 | 130 | 621 | 2.20e-74 | 250 |
| Msa0187710 | AT5G03540.2 | 28.788 | 528 | 336 | 7 | 98 | 606 | 13 | 519 | 1.17e-72 | 243 |
| Msa0187710 | AT5G03540.1 | 28.108 | 555 | 356 | 8 | 74 | 606 | 101 | 634 | 7.06e-72 | 243 |
| Msa0187710 | AT3G29400.1 | 31.404 | 570 | 343 | 14 | 74 | 607 | 97 | 654 | 4.47e-71 | 242 |
| Msa0187710 | AT5G03540.3 | 29.736 | 454 | 284 | 5 | 167 | 606 | 228 | 660 | 1.57e-70 | 240 |
| Msa0187710 | AT5G58430.1 | 27.462 | 528 | 339 | 7 | 92 | 599 | 113 | 616 | 1.18e-61 | 216 |
| Msa0187710 | AT1G07000.1 | 28.101 | 516 | 314 | 11 | 100 | 599 | 120 | 594 | 6.66e-60 | 210 |
| Msa0187710 | AT5G61010.1 | 28.205 | 507 | 334 | 10 | 105 | 599 | 136 | 624 | 7.92e-58 | 205 |
| Msa0187710 | AT5G61010.2 | 28.205 | 507 | 334 | 10 | 105 | 599 | 136 | 624 | 7.92e-58 | 205 |
| Msa0187710 | AT5G13150.1 | 24.826 | 576 | 401 | 10 | 41 | 599 | 82 | 642 | 3.71e-53 | 193 |
| Msa0187710 | AT5G52350.1 | 27.333 | 450 | 293 | 6 | 167 | 606 | 156 | 581 | 1.86e-52 | 189 |
| Msa0187710 | AT5G13990.1 | 27.434 | 565 | 372 | 13 | 56 | 599 | 132 | 679 | 2.10e-52 | 191 |
| Msa0187710 | AT4G31540.1 | 22.047 | 508 | 347 | 10 | 103 | 599 | 185 | 654 | 2.36e-26 | 114 |
| Msa0187710 | AT1G51640.1 | 21.635 | 416 | 288 | 9 | 168 | 564 | 192 | 588 | 3.97e-16 | 82.4 |
Find 116 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAAACCACTGTGTTAA+AGG | 0.164893 | 2_1:-2426410 | None:intergenic |
| TCATACAACTCGCGATAAAT+TGG | 0.185446 | 2_1:-2428069 | None:intergenic |
| GTCGAGTTGTTGGATGATTC+TGG | 0.219931 | 2_1:-2427616 | None:intergenic |
| TCCAAATCGCTGGCGAATTT+CGG | 0.249462 | 2_1:+2427457 | Msa0187710:CDS |
| ACCGAAATTCGCCAGCGATT+TGG | 0.283697 | 2_1:-2427458 | None:intergenic |
| ATATCTGGCAGAATTCATTT+TGG | 0.286829 | 2_1:-2426724 | None:intergenic |
| TTCGATTTCCGTCGAGTTGT+TGG | 0.318088 | 2_1:-2427626 | None:intergenic |
| TCCATCAGAGAAGCTTGTTT+TGG | 0.326734 | 2_1:+2427172 | Msa0187710:CDS |
| TCTTCATAGCGATTTGCATT+AGG | 0.360459 | 2_1:-2426697 | None:intergenic |
| TCTTCGCGAAGTTCTGATTC+TGG | 0.360589 | 2_1:-2428015 | None:intergenic |
| CGAAGAGATAAAAGCGTCTC+TGG | 0.365248 | 2_1:+2428032 | Msa0187710:CDS |
| TCAGTGAGAACACTCTTTGC+TGG | 0.365371 | 2_1:+2427112 | Msa0187710:CDS |
| CACAATCACCGTGTTGTTAC+CGG | 0.369043 | 2_1:+2427303 | Msa0187710:CDS |
| TCGAACTTGCAATACGTTCT+TGG | 0.371959 | 2_1:+2427793 | Msa0187710:CDS |
| TTATGTGCGTGGATGAGTTT+TGG | 0.373806 | 2_1:-2426674 | None:intergenic |
| GGACTGTACAAGTAAGATTC+TGG | 0.379774 | 2_1:-2427595 | None:intergenic |
| CCTGGTTCATGGTTAATATC+TGG | 0.388356 | 2_1:-2426739 | None:intergenic |
| GCGATTTGGAAGAGTCCTTC+AGG | 0.389964 | 2_1:-2427444 | None:intergenic |
| TTTGGCATAATCCGAAGTTT+CGG | 0.415502 | 2_1:-2426543 | None:intergenic |
| AACACTGGAGGTTGAATTGA+AGG | 0.416060 | 2_1:-2427344 | None:intergenic |
| GAAAATCAACTGTTGGTTAG+AGG | 0.428666 | 2_1:+2427078 | Msa0187710:CDS |
| GCCATTGATATTGCTGTCGT+TGG | 0.436404 | 2_1:-2427916 | None:intergenic |
| GGTATTTATGAAATTCAATC+TGG | 0.441697 | 2_1:+2427951 | Msa0187710:CDS |
| GTCTAAGTATGCCTGGTTCA+TGG | 0.445819 | 2_1:-2426750 | None:intergenic |
| GGATCCTTTAGCACTTCTTT+CGG | 0.447501 | 2_1:+2426791 | Msa0187710:CDS |
| TGCAAGAAATAGATATGATA+AGG | 0.451858 | 2_1:-2427734 | None:intergenic |
| CATACAACTCGCGATAAATT+GGG | 0.457014 | 2_1:-2428068 | None:intergenic |
| GAGAAAATCGATTCAATCTC+CGG | 0.457767 | 2_1:-2427322 | None:intergenic |
| GTAGAAGAGGGAAGTTACTT+TGG | 0.460103 | 2_1:-2426561 | None:intergenic |
| TGCATGGTTTCTAACGGTTA+CGG | 0.461405 | 2_1:+2426929 | Msa0187710:CDS |
| CGAAGATGTTCAGAGTTACT+TGG | 0.463676 | 2_1:+2428152 | Msa0187710:CDS |
| ACAAGTAAGATTCTGGCAAT+GGG | 0.468239 | 2_1:-2427588 | None:intergenic |
| CGAAGGTGAATAAGATGGAC+TGG | 0.472993 | 2_1:+2427041 | Msa0187710:CDS |
| TTGGTGGATCTCTTCTGTGT+GGG | 0.475912 | 2_1:+2428171 | Msa0187710:CDS |
| GAAGAGATAAAAGCGTCTCT+GGG | 0.485487 | 2_1:+2428033 | Msa0187710:CDS |
| ACCAAAACAAGCTTCTCTGA+TGG | 0.486788 | 2_1:-2427173 | None:intergenic |
| CACATTTGTTGTTGTAGAAG+AGG | 0.501283 | 2_1:-2426574 | None:intergenic |
| TTGAGATGAAAATCAACTGT+TGG | 0.503973 | 2_1:+2427071 | Msa0187710:CDS |
| TACAAGTAAGATTCTGGCAA+TGG | 0.508487 | 2_1:-2427589 | None:intergenic |
| AGTGCATGGCTCTTTGAAGT+TGG | 0.511939 | 2_1:-2426625 | None:intergenic |
| ATTGCATTGTTTGCGTTGCA+AGG | 0.512606 | 2_1:-2427492 | None:intergenic |
| CGGTAACAACACGGTGATTG+TGG | 0.517671 | 2_1:-2427302 | None:intergenic |
| TTTGGTGAAATTTCAAGGGA+TGG | 0.522369 | 2_1:+2427190 | Msa0187710:CDS |
| GAAGGACTCTTCCAAATCGC+TGG | 0.526760 | 2_1:+2427447 | Msa0187710:CDS |
| AGAACCGAAAGAAGTGCTAA+AGG | 0.527842 | 2_1:-2426795 | None:intergenic |
| CTCTTTGAAGTTGGTTAACG+TGG | 0.528413 | 2_1:-2426616 | None:intergenic |
| TGGCATACATATCAAGCAAA+CGG | 0.529428 | 2_1:-2427282 | None:intergenic |
| ATTCAGAGTCTAAGTATGCC+TGG | 0.531279 | 2_1:-2426757 | None:intergenic |
| ACATTTGTTGTTGTAGAAGA+GGG | 0.538834 | 2_1:-2426573 | None:intergenic |
| TTTCTCGAAGGTGAATAAGA+TGG | 0.547807 | 2_1:+2427036 | Msa0187710:CDS |
| TCTTCAACACGTGGTGGAGA+AGG | 0.548047 | 2_1:+2427762 | Msa0187710:CDS |
| TGTGGATGAATTTGAAGTTG+AGG | 0.549385 | 2_1:-2426453 | None:intergenic |
| GACTCTGAATCCTTCTCCGT+CGG | 0.549465 | 2_1:+2426770 | Msa0187710:CDS |
| AATACGTTCTTGGTGACGAT+TGG | 0.551028 | 2_1:+2427803 | Msa0187710:CDS |
| AATATCAATGGCAGAGGCGA+GGG | 0.552750 | 2_1:+2427927 | Msa0187710:CDS |
| GAAAATTATTGCTGACTGCA+TGG | 0.552831 | 2_1:+2426913 | Msa0187710:CDS |
| AAAATGGAACTCCGAAACTT+CGG | 0.558623 | 2_1:+2426532 | Msa0187710:CDS |
| AGAAAATCGATCGTTGATGA+AGG | 0.558695 | 2_1:+2426983 | Msa0187710:CDS |
| GGAAGAGTCCTTCAGGATTG+CGG | 0.559274 | 2_1:-2427437 | None:intergenic |
| GCTAAAGGATCCGACGGAGA+AGG | 0.560596 | 2_1:-2426780 | None:intergenic |
| TTGCATTGTTTGCGTTGCAA+GGG | 0.563078 | 2_1:-2427491 | None:intergenic |
| AATCAACGACGCTATTCGAA+TGG | 0.563314 | 2_1:-2427659 | None:intergenic |
| GTTGCTGTAATCTGTAAGCT+TGG | 0.566045 | 2_1:-2427521 | None:intergenic |
| GATACACACCGCATTGTGAA+AGG | 0.567987 | 2_1:+2428090 | Msa0187710:CDS |
| TCCAACGACAGCAATATCAA+TGG | 0.570928 | 2_1:+2427915 | Msa0187710:CDS |
| TGCTTGAGATTTAACACTGG+AGG | 0.571477 | 2_1:-2427356 | None:intergenic |
| GAGAGAGAAACCTCTGCGAT+CGG | 0.573297 | 2_1:+2427134 | Msa0187710:CDS |
| CGATTGGTTGTTGAAGCACA+TGG | 0.575201 | 2_1:+2427819 | Msa0187710:CDS |
| CCAGATATTAACCATGAACC+AGG | 0.578053 | 2_1:+2426739 | Msa0187710:CDS |
| GCTGACTGCATGGTTTCTAA+CGG | 0.578403 | 2_1:+2426923 | Msa0187710:CDS |
| ATCAATGGCAGAGGCGAGGG+CGG | 0.581906 | 2_1:+2427930 | Msa0187710:CDS |
| AAATCGCTGGCGAATTTCGG+TGG | 0.583583 | 2_1:+2427460 | Msa0187710:CDS |
| GAAGTACGAGAGAATAGCAT+GGG | 0.583972 | 2_1:+2427864 | Msa0187710:CDS |
| CAATATCAATGGCAGAGGCG+AGG | 0.588562 | 2_1:+2427926 | Msa0187710:CDS |
| TAATGCAAATCGCTATGAAG+AGG | 0.591024 | 2_1:+2426699 | Msa0187710:CDS |
| TTCAATCTCCGGTAACAACA+CGG | 0.593389 | 2_1:-2427311 | None:intergenic |
| CTTGGTGGATCTCTTCTGTG+TGG | 0.593545 | 2_1:+2428170 | Msa0187710:CDS |
| GATGAATTTGAAGTTGAGGA+TGG | 0.594100 | 2_1:-2426449 | None:intergenic |
| ACGCGTTTCTTCCGATGTGG+TGG | 0.594199 | 2_1:+2426883 | Msa0187710:CDS |
| AGTAACTCTGAACATCTTCG+TGG | 0.600350 | 2_1:-2428149 | None:intergenic |
| AGCACATGGAGAAGGTGAAA+CGG | 0.603761 | 2_1:+2427833 | Msa0187710:CDS |
| ATTCGAGTCCGCAATCCTGA+AGG | 0.606291 | 2_1:+2427429 | Msa0187710:CDS |
| GTTGTTGAAGCACATGGAGA+AGG | 0.606820 | 2_1:+2427825 | Msa0187710:CDS |
| GACAGCAATATCAATGGCAG+AGG | 0.609185 | 2_1:+2427921 | Msa0187710:CDS |
| TGAACGCGTTTCTTCCGATG+TGG | 0.613584 | 2_1:+2426880 | Msa0187710:CDS |
| AGATGTTCAGAGTTACTTGG+TGG | 0.613783 | 2_1:+2428155 | Msa0187710:CDS |
| GAAGGTGAATAAGATGGACT+GGG | 0.618235 | 2_1:+2427042 | Msa0187710:CDS |
| AGAAGTGCTAAAGGATCCGA+CGG | 0.622079 | 2_1:-2426786 | None:intergenic |
| TTGAGGATGGTAATCTGTTG+CGG | 0.625050 | 2_1:-2426436 | None:intergenic |
| TGGTGGATCTCTTCTGTGTG+GGG | 0.626196 | 2_1:+2428172 | Msa0187710:CDS |
| TTTCAAATCATCCACCACAT+CGG | 0.630618 | 2_1:-2426894 | None:intergenic |
| TCTTTGATCCTTTCACAATG+CGG | 0.630994 | 2_1:-2428098 | None:intergenic |
| GTAACTCTGAACATCTTCGT+GGG | 0.637771 | 2_1:-2428148 | None:intergenic |
| AAGAGATAAAAGCGTCTCTG+GGG | 0.642018 | 2_1:+2428034 | Msa0187710:CDS |
| GAGAATAGCATGGGGCGCAG+TGG | 0.645722 | 2_1:+2427873 | Msa0187710:CDS |
| AGACGATGATCACGATGCAG+AGG | 0.648493 | 2_1:+2426841 | Msa0187710:CDS |
| CGAAAACAAAGAAATTGACA+CGG | 0.650160 | 2_1:+2427248 | Msa0187710:CDS |
| AGAATCATCCAACAACTCGA+CGG | 0.651783 | 2_1:+2427618 | Msa0187710:CDS |
| TGCAAACAATCTTCAACACG+TGG | 0.652473 | 2_1:+2427753 | Msa0187710:CDS |
| CGTTTACAAACTCAATGTGG+AGG | 0.653247 | 2_1:+2427006 | Msa0187710:CDS |
| CAAGTAAGATTCTGGCAATG+GGG | 0.657666 | 2_1:-2427587 | None:intergenic |
| ATATGCTTGAGATTTAACAC+TGG | 0.659208 | 2_1:-2427359 | None:intergenic |
| AACGTGGTGAATGTACTGAA+TGG | 0.660657 | 2_1:-2426600 | None:intergenic |
| AGAAGTACGAGAGAATAGCA+TGG | 0.668844 | 2_1:+2427863 | Msa0187710:CDS |
| GGCAATGGGGAATTCAACGA+CGG | 0.670813 | 2_1:-2427574 | None:intergenic |
| TTTGCATTAGGTTATGTGCG+TGG | 0.672326 | 2_1:-2426685 | None:intergenic |
| GAGCTCGAGTAACAAGTGCA+TGG | 0.673672 | 2_1:-2426639 | None:intergenic |
| AAGCGAAAATCCGATCGCAG+AGG | 0.673742 | 2_1:-2427144 | None:intergenic |
| GGAGGAAAGAAGTTTCTCGA+AGG | 0.677574 | 2_1:+2427024 | Msa0187710:CDS |
| AATGGGGAATTCAACGACGG+AGG | 0.686615 | 2_1:-2427571 | None:intergenic |
| GTGTGTAAACGTTTACACCA+CGG | 0.686639 | 2_1:+2426958 | Msa0187710:CDS |
| GAAAACAAAGAAATTGACAC+GGG | 0.688814 | 2_1:+2427249 | Msa0187710:CDS |
| GCTTGAAACCTTTAACACAG+TGG | 0.690080 | 2_1:+2426402 | Msa0187710:CDS |
| AGGCGTTTACAAACTCAATG+TGG | 0.707306 | 2_1:+2427003 | Msa0187710:CDS |
| AAACAATCTTCAACACGTGG+TGG | 0.708479 | 2_1:+2427756 | Msa0187710:CDS |
| AAGTACGAGAGAATAGCATG+GGG | 0.742239 | 2_1:+2427865 | Msa0187710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTGGTGAAATTTCAA+GGG | + | chr2_1:2427186-2427205 | Msa0187710:CDS | 25.0% |
| ! | TGCAAGAAATAGATATGATA+AGG | - | chr2_1:2427737-2427756 | None:intergenic | 25.0% |
| ! | GGTATTTATGAAATTCAATC+TGG | + | chr2_1:2427951-2427970 | Msa0187710:CDS | 25.0% |
| !!! | TTGTTTTGGTGAAATTTCAA+GGG | + | chr2_1:2427186-2427205 | Msa0187710:CDS | 25.0% |
| ! | TGCAAGAAATAGATATGATA+AGG | - | chr2_1:2427737-2427756 | None:intergenic | 25.0% |
| ! | GGTATTTATGAAATTCAATC+TGG | + | chr2_1:2427951-2427970 | Msa0187710:CDS | 25.0% |
| ATTGAAAACCACTGTGTTAA+AGG | - | chr2_1:2426413-2426432 | None:intergenic | 30.0% | |
| !! | CAGAAGCACTTATACAAAAA+TGG | + | chr2_1:2426516-2426535 | Msa0187710:CDS | 30.0% |
| !! | ACATTTGTTGTTGTAGAAGA+GGG | - | chr2_1:2426576-2426595 | None:intergenic | 30.0% |
| ! | ATATCTGGCAGAATTCATTT+TGG | - | chr2_1:2426727-2426746 | None:intergenic | 30.0% |
| TTGAGATGAAAATCAACTGT+TGG | + | chr2_1:2427071-2427090 | Msa0187710:CDS | 30.0% | |
| !!! | CTTGTTTTGGTGAAATTTCA+AGG | + | chr2_1:2427185-2427204 | Msa0187710:CDS | 30.0% |
| CGAAAACAAAGAAATTGACA+CGG | + | chr2_1:2427248-2427267 | Msa0187710:CDS | 30.0% | |
| GAAAACAAAGAAATTGACAC+GGG | + | chr2_1:2427249-2427268 | Msa0187710:CDS | 30.0% | |
| ATATGCTTGAGATTTAACAC+TGG | - | chr2_1:2427362-2427381 | None:intergenic | 30.0% | |
| ATTGAAAACCACTGTGTTAA+AGG | - | chr2_1:2426413-2426432 | None:intergenic | 30.0% | |
| !! | CAGAAGCACTTATACAAAAA+TGG | + | chr2_1:2426516-2426535 | Msa0187710:CDS | 30.0% |
| !! | ACATTTGTTGTTGTAGAAGA+GGG | - | chr2_1:2426576-2426595 | None:intergenic | 30.0% |
| ! | ATATCTGGCAGAATTCATTT+TGG | - | chr2_1:2426727-2426746 | None:intergenic | 30.0% |
| TTGAGATGAAAATCAACTGT+TGG | + | chr2_1:2427071-2427090 | Msa0187710:CDS | 30.0% | |
| !!! | CTTGTTTTGGTGAAATTTCA+AGG | + | chr2_1:2427185-2427204 | Msa0187710:CDS | 30.0% |
| CGAAAACAAAGAAATTGACA+CGG | + | chr2_1:2427248-2427267 | Msa0187710:CDS | 30.0% | |
| GAAAACAAAGAAATTGACAC+GGG | + | chr2_1:2427249-2427268 | Msa0187710:CDS | 30.0% | |
| ATATGCTTGAGATTTAACAC+TGG | - | chr2_1:2427362-2427381 | None:intergenic | 30.0% | |
| ! | GATGAATTTGAAGTTGAGGA+TGG | - | chr2_1:2426452-2426471 | None:intergenic | 35.0% |
| ! | TGTGGATGAATTTGAAGTTG+AGG | - | chr2_1:2426456-2426475 | None:intergenic | 35.0% |
| AAAATGGAACTCCGAAACTT+CGG | + | chr2_1:2426532-2426551 | Msa0187710:CDS | 35.0% | |
| TTTGGCATAATCCGAAGTTT+CGG | - | chr2_1:2426546-2426565 | None:intergenic | 35.0% | |
| !! | CACATTTGTTGTTGTAGAAG+AGG | - | chr2_1:2426577-2426596 | None:intergenic | 35.0% |
| TCTTCATAGCGATTTGCATT+AGG | - | chr2_1:2426700-2426719 | None:intergenic | 35.0% | |
| TAATGCAAATCGCTATGAAG+AGG | + | chr2_1:2426699-2426718 | Msa0187710:CDS | 35.0% | |
| ! | ACTTCTTTCGGTTCTTTTGA+TGG | + | chr2_1:2426803-2426822 | Msa0187710:CDS | 35.0% |
| TTTCAAATCATCCACCACAT+CGG | - | chr2_1:2426897-2426916 | None:intergenic | 35.0% | |
| ! | GAAAATTATTGCTGACTGCA+TGG | + | chr2_1:2426913-2426932 | Msa0187710:CDS | 35.0% |
| ! | AGAAAATCGATCGTTGATGA+AGG | + | chr2_1:2426983-2427002 | Msa0187710:CDS | 35.0% |
| TTTCTCGAAGGTGAATAAGA+TGG | + | chr2_1:2427036-2427055 | Msa0187710:CDS | 35.0% | |
| ! | GAAAATCAACTGTTGGTTAG+AGG | + | chr2_1:2427078-2427097 | Msa0187710:CDS | 35.0% |
| TTTGGTGAAATTTCAAGGGA+TGG | + | chr2_1:2427190-2427209 | Msa0187710:CDS | 35.0% | |
| !! | TTTGTTTTCGCAACAAGTTC+AGG | - | chr2_1:2427238-2427257 | None:intergenic | 35.0% |
| TGGCATACATATCAAGCAAA+CGG | - | chr2_1:2427285-2427304 | None:intergenic | 35.0% | |
| ! | GAGAAAATCGATTCAATCTC+CGG | - | chr2_1:2427325-2427344 | None:intergenic | 35.0% |
| ACAAGTAAGATTCTGGCAAT+GGG | - | chr2_1:2427591-2427610 | None:intergenic | 35.0% | |
| TACAAGTAAGATTCTGGCAA+TGG | - | chr2_1:2427592-2427611 | None:intergenic | 35.0% | |
| ! | ATTGCTGTCGTTGGATTTTT+CGG | - | chr2_1:2427910-2427929 | None:intergenic | 35.0% |
| CATACAACTCGCGATAAATT+GGG | - | chr2_1:2428071-2428090 | None:intergenic | 35.0% | |
| TCATACAACTCGCGATAAAT+TGG | - | chr2_1:2428072-2428091 | None:intergenic | 35.0% | |
| TCTTTGATCCTTTCACAATG+CGG | - | chr2_1:2428101-2428120 | None:intergenic | 35.0% | |
| ! | GATGAATTTGAAGTTGAGGA+TGG | - | chr2_1:2426452-2426471 | None:intergenic | 35.0% |
| ! | TGTGGATGAATTTGAAGTTG+AGG | - | chr2_1:2426456-2426475 | None:intergenic | 35.0% |
| AAAATGGAACTCCGAAACTT+CGG | + | chr2_1:2426532-2426551 | Msa0187710:CDS | 35.0% | |
| TTTGGCATAATCCGAAGTTT+CGG | - | chr2_1:2426546-2426565 | None:intergenic | 35.0% | |
| !! | CACATTTGTTGTTGTAGAAG+AGG | - | chr2_1:2426577-2426596 | None:intergenic | 35.0% |
| TCTTCATAGCGATTTGCATT+AGG | - | chr2_1:2426700-2426719 | None:intergenic | 35.0% | |
| TAATGCAAATCGCTATGAAG+AGG | + | chr2_1:2426699-2426718 | Msa0187710:CDS | 35.0% | |
| ! | ACTTCTTTCGGTTCTTTTGA+TGG | + | chr2_1:2426803-2426822 | Msa0187710:CDS | 35.0% |
| TTTCAAATCATCCACCACAT+CGG | - | chr2_1:2426897-2426916 | None:intergenic | 35.0% | |
| ! | GAAAATTATTGCTGACTGCA+TGG | + | chr2_1:2426913-2426932 | Msa0187710:CDS | 35.0% |
| ! | AGAAAATCGATCGTTGATGA+AGG | + | chr2_1:2426983-2427002 | Msa0187710:CDS | 35.0% |
| TTTCTCGAAGGTGAATAAGA+TGG | + | chr2_1:2427036-2427055 | Msa0187710:CDS | 35.0% | |
| ! | GAAAATCAACTGTTGGTTAG+AGG | + | chr2_1:2427078-2427097 | Msa0187710:CDS | 35.0% |
| TTTGGTGAAATTTCAAGGGA+TGG | + | chr2_1:2427190-2427209 | Msa0187710:CDS | 35.0% | |
| !! | TTTGTTTTCGCAACAAGTTC+AGG | - | chr2_1:2427238-2427257 | None:intergenic | 35.0% |
| TGGCATACATATCAAGCAAA+CGG | - | chr2_1:2427285-2427304 | None:intergenic | 35.0% | |
| ! | GAGAAAATCGATTCAATCTC+CGG | - | chr2_1:2427325-2427344 | None:intergenic | 35.0% |
| ACAAGTAAGATTCTGGCAAT+GGG | - | chr2_1:2427591-2427610 | None:intergenic | 35.0% | |
| TACAAGTAAGATTCTGGCAA+TGG | - | chr2_1:2427592-2427611 | None:intergenic | 35.0% | |
| ! | ATTGCTGTCGTTGGATTTTT+CGG | - | chr2_1:2427910-2427929 | None:intergenic | 35.0% |
| CATACAACTCGCGATAAATT+GGG | - | chr2_1:2428071-2428090 | None:intergenic | 35.0% | |
| TCATACAACTCGCGATAAAT+TGG | - | chr2_1:2428072-2428091 | None:intergenic | 35.0% | |
| TCTTTGATCCTTTCACAATG+CGG | - | chr2_1:2428101-2428120 | None:intergenic | 35.0% | |
| GCTTGAAACCTTTAACACAG+TGG | + | chr2_1:2426402-2426421 | Msa0187710:CDS | 40.0% | |
| TTGAGGATGGTAATCTGTTG+CGG | - | chr2_1:2426439-2426458 | None:intergenic | 40.0% | |
| !!! | TTTTCTGCTTGAAGGTGTTG+TGG | - | chr2_1:2426474-2426493 | None:intergenic | 40.0% |
| ! | GTTGTAGCTTTTCTGCTTGA+AGG | - | chr2_1:2426482-2426501 | None:intergenic | 40.0% |
| GTAGAAGAGGGAAGTTACTT+TGG | - | chr2_1:2426564-2426583 | None:intergenic | 40.0% | |
| AACGTGGTGAATGTACTGAA+TGG | - | chr2_1:2426603-2426622 | None:intergenic | 40.0% | |
| !! | CTCTTTGAAGTTGGTTAACG+TGG | - | chr2_1:2426619-2426638 | None:intergenic | 40.0% |
| ! | TTATGTGCGTGGATGAGTTT+TGG | - | chr2_1:2426677-2426696 | None:intergenic | 40.0% |
| TTTGCATTAGGTTATGTGCG+TGG | - | chr2_1:2426688-2426707 | None:intergenic | 40.0% | |
| CCTGGTTCATGGTTAATATC+TGG | - | chr2_1:2426742-2426761 | None:intergenic | 40.0% | |
| CCAGATATTAACCATGAACC+AGG | + | chr2_1:2426739-2426758 | Msa0187710:CDS | 40.0% | |
| ATTCAGAGTCTAAGTATGCC+TGG | - | chr2_1:2426760-2426779 | None:intergenic | 40.0% | |
| GGATCCTTTAGCACTTCTTT+CGG | + | chr2_1:2426791-2426810 | Msa0187710:CDS | 40.0% | |
| !! | AGAACCGAAAGAAGTGCTAA+AGG | - | chr2_1:2426798-2426817 | None:intergenic | 40.0% |
| ! | TCTTTCGGTTCTTTTGATGG+AGG | + | chr2_1:2426806-2426825 | Msa0187710:CDS | 40.0% |
| ! | TTCTTTTGATGGAGGAACAC+TGG | + | chr2_1:2426814-2426833 | Msa0187710:CDS | 40.0% |
| TGCATGGTTTCTAACGGTTA+CGG | + | chr2_1:2426929-2426948 | Msa0187710:CDS | 40.0% | |
| GTGTGTAAACGTTTACACCA+CGG | + | chr2_1:2426958-2426977 | Msa0187710:CDS | 40.0% | |
| !! | AACGATCGATTTTCTAACCG+TGG | - | chr2_1:2426978-2426997 | None:intergenic | 40.0% |
| AGGCGTTTACAAACTCAATG+TGG | + | chr2_1:2427003-2427022 | Msa0187710:CDS | 40.0% | |
| CGTTTACAAACTCAATGTGG+AGG | + | chr2_1:2427006-2427025 | Msa0187710:CDS | 40.0% | |
| ! | GAAGGTGAATAAGATGGACT+GGG | + | chr2_1:2427042-2427061 | Msa0187710:CDS | 40.0% |
| !! | TCCATCAGAGAAGCTTGTTT+TGG | + | chr2_1:2427172-2427191 | Msa0187710:CDS | 40.0% |
| ACCAAAACAAGCTTCTCTGA+TGG | - | chr2_1:2427176-2427195 | None:intergenic | 40.0% | |
| TTCAATCTCCGGTAACAACA+CGG | - | chr2_1:2427314-2427333 | None:intergenic | 40.0% | |
| AACACTGGAGGTTGAATTGA+AGG | - | chr2_1:2427347-2427366 | None:intergenic | 40.0% | |
| TGCTTGAGATTTAACACTGG+AGG | - | chr2_1:2427359-2427378 | None:intergenic | 40.0% | |
| TTGCATTGTTTGCGTTGCAA+GGG | - | chr2_1:2427494-2427513 | None:intergenic | 40.0% | |
| ATTGCATTGTTTGCGTTGCA+AGG | - | chr2_1:2427495-2427514 | None:intergenic | 40.0% | |
| GTTGCTGTAATCTGTAAGCT+TGG | - | chr2_1:2427524-2427543 | None:intergenic | 40.0% | |
| CAAGTAAGATTCTGGCAATG+GGG | - | chr2_1:2427590-2427609 | None:intergenic | 40.0% | |
| GGACTGTACAAGTAAGATTC+TGG | - | chr2_1:2427598-2427617 | None:intergenic | 40.0% | |
| AGAATCATCCAACAACTCGA+CGG | + | chr2_1:2427618-2427637 | Msa0187710:CDS | 40.0% | |
| AATCAACGACGCTATTCGAA+TGG | - | chr2_1:2427662-2427681 | None:intergenic | 40.0% | |
| TGCAAACAATCTTCAACACG+TGG | + | chr2_1:2427753-2427772 | Msa0187710:CDS | 40.0% | |
| AAACAATCTTCAACACGTGG+TGG | + | chr2_1:2427756-2427775 | Msa0187710:CDS | 40.0% | |
| TCGAACTTGCAATACGTTCT+TGG | + | chr2_1:2427793-2427812 | Msa0187710:CDS | 40.0% | |
| !! | AATACGTTCTTGGTGACGAT+TGG | + | chr2_1:2427803-2427822 | Msa0187710:CDS | 40.0% |
| ! | AGAAGTACGAGAGAATAGCA+TGG | + | chr2_1:2427863-2427882 | Msa0187710:CDS | 40.0% |
| GAAGTACGAGAGAATAGCAT+GGG | + | chr2_1:2427864-2427883 | Msa0187710:CDS | 40.0% | |
| AAGTACGAGAGAATAGCATG+GGG | + | chr2_1:2427865-2427884 | Msa0187710:CDS | 40.0% | |
| TCCAACGACAGCAATATCAA+TGG | + | chr2_1:2427915-2427934 | Msa0187710:CDS | 40.0% | |
| !! | GAAGAGATAAAAGCGTCTCT+GGG | + | chr2_1:2428033-2428052 | Msa0187710:CDS | 40.0% |
| !! | AAGAGATAAAAGCGTCTCTG+GGG | + | chr2_1:2428034-2428053 | Msa0187710:CDS | 40.0% |
| GTAACTCTGAACATCTTCGT+GGG | - | chr2_1:2428151-2428170 | None:intergenic | 40.0% | |
| AGTAACTCTGAACATCTTCG+TGG | - | chr2_1:2428152-2428171 | None:intergenic | 40.0% | |
| CGAAGATGTTCAGAGTTACT+TGG | + | chr2_1:2428152-2428171 | Msa0187710:CDS | 40.0% | |
| AGATGTTCAGAGTTACTTGG+TGG | + | chr2_1:2428155-2428174 | Msa0187710:CDS | 40.0% | |
| GCTTGAAACCTTTAACACAG+TGG | + | chr2_1:2426402-2426421 | Msa0187710:CDS | 40.0% | |
| TTGAGGATGGTAATCTGTTG+CGG | - | chr2_1:2426439-2426458 | None:intergenic | 40.0% | |
| !!! | TTTTCTGCTTGAAGGTGTTG+TGG | - | chr2_1:2426474-2426493 | None:intergenic | 40.0% |
| ! | GTTGTAGCTTTTCTGCTTGA+AGG | - | chr2_1:2426482-2426501 | None:intergenic | 40.0% |
| GTAGAAGAGGGAAGTTACTT+TGG | - | chr2_1:2426564-2426583 | None:intergenic | 40.0% | |
| AACGTGGTGAATGTACTGAA+TGG | - | chr2_1:2426603-2426622 | None:intergenic | 40.0% | |
| !! | CTCTTTGAAGTTGGTTAACG+TGG | - | chr2_1:2426619-2426638 | None:intergenic | 40.0% |
| ! | TTATGTGCGTGGATGAGTTT+TGG | - | chr2_1:2426677-2426696 | None:intergenic | 40.0% |
| TTTGCATTAGGTTATGTGCG+TGG | - | chr2_1:2426688-2426707 | None:intergenic | 40.0% | |
| CCTGGTTCATGGTTAATATC+TGG | - | chr2_1:2426742-2426761 | None:intergenic | 40.0% | |
| CCAGATATTAACCATGAACC+AGG | + | chr2_1:2426739-2426758 | Msa0187710:CDS | 40.0% | |
| ATTCAGAGTCTAAGTATGCC+TGG | - | chr2_1:2426760-2426779 | None:intergenic | 40.0% | |
| GGATCCTTTAGCACTTCTTT+CGG | + | chr2_1:2426791-2426810 | Msa0187710:CDS | 40.0% | |
| !! | AGAACCGAAAGAAGTGCTAA+AGG | - | chr2_1:2426798-2426817 | None:intergenic | 40.0% |
| ! | TCTTTCGGTTCTTTTGATGG+AGG | + | chr2_1:2426806-2426825 | Msa0187710:CDS | 40.0% |
| ! | TTCTTTTGATGGAGGAACAC+TGG | + | chr2_1:2426814-2426833 | Msa0187710:CDS | 40.0% |
| TGCATGGTTTCTAACGGTTA+CGG | + | chr2_1:2426929-2426948 | Msa0187710:CDS | 40.0% | |
| GTGTGTAAACGTTTACACCA+CGG | + | chr2_1:2426958-2426977 | Msa0187710:CDS | 40.0% | |
| !! | AACGATCGATTTTCTAACCG+TGG | - | chr2_1:2426978-2426997 | None:intergenic | 40.0% |
| AGGCGTTTACAAACTCAATG+TGG | + | chr2_1:2427003-2427022 | Msa0187710:CDS | 40.0% | |
| CGTTTACAAACTCAATGTGG+AGG | + | chr2_1:2427006-2427025 | Msa0187710:CDS | 40.0% | |
| ! | GAAGGTGAATAAGATGGACT+GGG | + | chr2_1:2427042-2427061 | Msa0187710:CDS | 40.0% |
| !! | TCCATCAGAGAAGCTTGTTT+TGG | + | chr2_1:2427172-2427191 | Msa0187710:CDS | 40.0% |
| ACCAAAACAAGCTTCTCTGA+TGG | - | chr2_1:2427176-2427195 | None:intergenic | 40.0% | |
| TTCAATCTCCGGTAACAACA+CGG | - | chr2_1:2427314-2427333 | None:intergenic | 40.0% | |
| AACACTGGAGGTTGAATTGA+AGG | - | chr2_1:2427347-2427366 | None:intergenic | 40.0% | |
| TGCTTGAGATTTAACACTGG+AGG | - | chr2_1:2427359-2427378 | None:intergenic | 40.0% | |
| TTGCATTGTTTGCGTTGCAA+GGG | - | chr2_1:2427494-2427513 | None:intergenic | 40.0% | |
| ATTGCATTGTTTGCGTTGCA+AGG | - | chr2_1:2427495-2427514 | None:intergenic | 40.0% | |
| GTTGCTGTAATCTGTAAGCT+TGG | - | chr2_1:2427524-2427543 | None:intergenic | 40.0% | |
| CAAGTAAGATTCTGGCAATG+GGG | - | chr2_1:2427590-2427609 | None:intergenic | 40.0% | |
| GGACTGTACAAGTAAGATTC+TGG | - | chr2_1:2427598-2427617 | None:intergenic | 40.0% | |
| AGAATCATCCAACAACTCGA+CGG | + | chr2_1:2427618-2427637 | Msa0187710:CDS | 40.0% | |
| AATCAACGACGCTATTCGAA+TGG | - | chr2_1:2427662-2427681 | None:intergenic | 40.0% | |
| TGCAAACAATCTTCAACACG+TGG | + | chr2_1:2427753-2427772 | Msa0187710:CDS | 40.0% | |
| AAACAATCTTCAACACGTGG+TGG | + | chr2_1:2427756-2427775 | Msa0187710:CDS | 40.0% | |
| TCGAACTTGCAATACGTTCT+TGG | + | chr2_1:2427793-2427812 | Msa0187710:CDS | 40.0% | |
| !! | AATACGTTCTTGGTGACGAT+TGG | + | chr2_1:2427803-2427822 | Msa0187710:CDS | 40.0% |
| ! | AGAAGTACGAGAGAATAGCA+TGG | + | chr2_1:2427863-2427882 | Msa0187710:CDS | 40.0% |
| GAAGTACGAGAGAATAGCAT+GGG | + | chr2_1:2427864-2427883 | Msa0187710:CDS | 40.0% | |
| AAGTACGAGAGAATAGCATG+GGG | + | chr2_1:2427865-2427884 | Msa0187710:CDS | 40.0% | |
| TCCAACGACAGCAATATCAA+TGG | + | chr2_1:2427915-2427934 | Msa0187710:CDS | 40.0% | |
| !! | GAAGAGATAAAAGCGTCTCT+GGG | + | chr2_1:2428033-2428052 | Msa0187710:CDS | 40.0% |
| !! | AAGAGATAAAAGCGTCTCTG+GGG | + | chr2_1:2428034-2428053 | Msa0187710:CDS | 40.0% |
| GTAACTCTGAACATCTTCGT+GGG | - | chr2_1:2428151-2428170 | None:intergenic | 40.0% | |
| AGTAACTCTGAACATCTTCG+TGG | - | chr2_1:2428152-2428171 | None:intergenic | 40.0% | |
| CGAAGATGTTCAGAGTTACT+TGG | + | chr2_1:2428152-2428171 | Msa0187710:CDS | 40.0% | |
| AGATGTTCAGAGTTACTTGG+TGG | + | chr2_1:2428155-2428174 | Msa0187710:CDS | 40.0% | |
| !! | AGTGCATGGCTCTTTGAAGT+TGG | - | chr2_1:2426628-2426647 | None:intergenic | 45.0% |
| !!! | TGGATGAGTTTTGGAGACGA+TGG | - | chr2_1:2426668-2426687 | None:intergenic | 45.0% |
| GTCTAAGTATGCCTGGTTCA+TGG | - | chr2_1:2426753-2426772 | None:intergenic | 45.0% | |
| !! | AGAAGTGCTAAAGGATCCGA+CGG | - | chr2_1:2426789-2426808 | None:intergenic | 45.0% |
| GCTGACTGCATGGTTTCTAA+CGG | + | chr2_1:2426923-2426942 | Msa0187710:CDS | 45.0% | |
| GGAGGAAAGAAGTTTCTCGA+AGG | + | chr2_1:2427024-2427043 | Msa0187710:CDS | 45.0% | |
| CGAAGGTGAATAAGATGGAC+TGG | + | chr2_1:2427041-2427060 | Msa0187710:CDS | 45.0% | |
| TCAGTGAGAACACTCTTTGC+TGG | + | chr2_1:2427112-2427131 | Msa0187710:CDS | 45.0% | |
| ! | CACAATCACCGTGTTGTTAC+CGG | + | chr2_1:2427303-2427322 | Msa0187710:CDS | 45.0% |
| TCCAAATCGCTGGCGAATTT+CGG | + | chr2_1:2427457-2427476 | Msa0187710:CDS | 45.0% | |
| ! | GTCGAGTTGTTGGATGATTC+TGG | - | chr2_1:2427619-2427638 | None:intergenic | 45.0% |
| ! | TTCGATTTCCGTCGAGTTGT+TGG | - | chr2_1:2427629-2427648 | None:intergenic | 45.0% |
| ! | CGATTGGTTGTTGAAGCACA+TGG | + | chr2_1:2427819-2427838 | Msa0187710:CDS | 45.0% |
| GTTGTTGAAGCACATGGAGA+AGG | + | chr2_1:2427825-2427844 | Msa0187710:CDS | 45.0% | |
| AGCACATGGAGAAGGTGAAA+CGG | + | chr2_1:2427833-2427852 | Msa0187710:CDS | 45.0% | |
| GCCATTGATATTGCTGTCGT+TGG | - | chr2_1:2427919-2427938 | None:intergenic | 45.0% | |
| GACAGCAATATCAATGGCAG+AGG | + | chr2_1:2427921-2427940 | Msa0187710:CDS | 45.0% | |
| AATATCAATGGCAGAGGCGA+GGG | + | chr2_1:2427927-2427946 | Msa0187710:CDS | 45.0% | |
| ! | TCTTCGCGAAGTTCTGATTC+TGG | - | chr2_1:2428018-2428037 | None:intergenic | 45.0% |
| !! | CGAAGAGATAAAAGCGTCTC+TGG | + | chr2_1:2428032-2428051 | Msa0187710:CDS | 45.0% |
| GATACACACCGCATTGTGAA+AGG | + | chr2_1:2428090-2428109 | Msa0187710:CDS | 45.0% | |
| ! | TTGGTGGATCTCTTCTGTGT+GGG | + | chr2_1:2428171-2428190 | Msa0187710:CDS | 45.0% |
| !! | AGTGCATGGCTCTTTGAAGT+TGG | - | chr2_1:2426628-2426647 | None:intergenic | 45.0% |
| !!! | TGGATGAGTTTTGGAGACGA+TGG | - | chr2_1:2426668-2426687 | None:intergenic | 45.0% |
| GTCTAAGTATGCCTGGTTCA+TGG | - | chr2_1:2426753-2426772 | None:intergenic | 45.0% | |
| !! | AGAAGTGCTAAAGGATCCGA+CGG | - | chr2_1:2426789-2426808 | None:intergenic | 45.0% |
| GCTGACTGCATGGTTTCTAA+CGG | + | chr2_1:2426923-2426942 | Msa0187710:CDS | 45.0% | |
| GGAGGAAAGAAGTTTCTCGA+AGG | + | chr2_1:2427024-2427043 | Msa0187710:CDS | 45.0% | |
| CGAAGGTGAATAAGATGGAC+TGG | + | chr2_1:2427041-2427060 | Msa0187710:CDS | 45.0% | |
| TCAGTGAGAACACTCTTTGC+TGG | + | chr2_1:2427112-2427131 | Msa0187710:CDS | 45.0% | |
| ! | CACAATCACCGTGTTGTTAC+CGG | + | chr2_1:2427303-2427322 | Msa0187710:CDS | 45.0% |
| TCCAAATCGCTGGCGAATTT+CGG | + | chr2_1:2427457-2427476 | Msa0187710:CDS | 45.0% | |
| ! | GTCGAGTTGTTGGATGATTC+TGG | - | chr2_1:2427619-2427638 | None:intergenic | 45.0% |
| ! | TTCGATTTCCGTCGAGTTGT+TGG | - | chr2_1:2427629-2427648 | None:intergenic | 45.0% |
| ! | CGATTGGTTGTTGAAGCACA+TGG | + | chr2_1:2427819-2427838 | Msa0187710:CDS | 45.0% |
| GTTGTTGAAGCACATGGAGA+AGG | + | chr2_1:2427825-2427844 | Msa0187710:CDS | 45.0% | |
| AGCACATGGAGAAGGTGAAA+CGG | + | chr2_1:2427833-2427852 | Msa0187710:CDS | 45.0% | |
| GCCATTGATATTGCTGTCGT+TGG | - | chr2_1:2427919-2427938 | None:intergenic | 45.0% | |
| GACAGCAATATCAATGGCAG+AGG | + | chr2_1:2427921-2427940 | Msa0187710:CDS | 45.0% | |
| AATATCAATGGCAGAGGCGA+GGG | + | chr2_1:2427927-2427946 | Msa0187710:CDS | 45.0% | |
| ! | TCTTCGCGAAGTTCTGATTC+TGG | - | chr2_1:2428018-2428037 | None:intergenic | 45.0% |
| !! | CGAAGAGATAAAAGCGTCTC+TGG | + | chr2_1:2428032-2428051 | Msa0187710:CDS | 45.0% |
| GATACACACCGCATTGTGAA+AGG | + | chr2_1:2428090-2428109 | Msa0187710:CDS | 45.0% | |
| ! | TTGGTGGATCTCTTCTGTGT+GGG | + | chr2_1:2428171-2428190 | Msa0187710:CDS | 45.0% |
| GAGCTCGAGTAACAAGTGCA+TGG | - | chr2_1:2426642-2426661 | None:intergenic | 50.0% | |
| GACTCTGAATCCTTCTCCGT+CGG | + | chr2_1:2426770-2426789 | Msa0187710:CDS | 50.0% | |
| AGACGATGATCACGATGCAG+AGG | + | chr2_1:2426841-2426860 | Msa0187710:CDS | 50.0% | |
| TGAACGCGTTTCTTCCGATG+TGG | + | chr2_1:2426880-2426899 | Msa0187710:CDS | 50.0% | |
| GAGAGAGAAACCTCTGCGAT+CGG | + | chr2_1:2427134-2427153 | Msa0187710:CDS | 50.0% | |
| AAGCGAAAATCCGATCGCAG+AGG | - | chr2_1:2427147-2427166 | None:intergenic | 50.0% | |
| CGGTAACAACACGGTGATTG+TGG | - | chr2_1:2427305-2427324 | None:intergenic | 50.0% | |
| ATTCGAGTCCGCAATCCTGA+AGG | + | chr2_1:2427429-2427448 | Msa0187710:CDS | 50.0% | |
| GGAAGAGTCCTTCAGGATTG+CGG | - | chr2_1:2427440-2427459 | None:intergenic | 50.0% | |
| ! | GCGATTTGGAAGAGTCCTTC+AGG | - | chr2_1:2427447-2427466 | None:intergenic | 50.0% |
| GAAGGACTCTTCCAAATCGC+TGG | + | chr2_1:2427447-2427466 | Msa0187710:CDS | 50.0% | |
| ACCGAAATTCGCCAGCGATT+TGG | - | chr2_1:2427461-2427480 | None:intergenic | 50.0% | |
| AAATCGCTGGCGAATTTCGG+TGG | + | chr2_1:2427460-2427479 | Msa0187710:CDS | 50.0% | |
| AATGGGGAATTCAACGACGG+AGG | - | chr2_1:2427574-2427593 | None:intergenic | 50.0% | |
| GGCAATGGGGAATTCAACGA+CGG | - | chr2_1:2427577-2427596 | None:intergenic | 50.0% | |
| ! | TCTTCAACACGTGGTGGAGA+AGG | + | chr2_1:2427762-2427781 | Msa0187710:CDS | 50.0% |
| CAATATCAATGGCAGAGGCG+AGG | + | chr2_1:2427926-2427945 | Msa0187710:CDS | 50.0% | |
| ! | CTTGGTGGATCTCTTCTGTG+TGG | + | chr2_1:2428170-2428189 | Msa0187710:CDS | 50.0% |
| ! | TGGTGGATCTCTTCTGTGTG+GGG | + | chr2_1:2428172-2428191 | Msa0187710:CDS | 50.0% |
| GAGCTCGAGTAACAAGTGCA+TGG | - | chr2_1:2426642-2426661 | None:intergenic | 50.0% | |
| GACTCTGAATCCTTCTCCGT+CGG | + | chr2_1:2426770-2426789 | Msa0187710:CDS | 50.0% | |
| AGACGATGATCACGATGCAG+AGG | + | chr2_1:2426841-2426860 | Msa0187710:CDS | 50.0% | |
| TGAACGCGTTTCTTCCGATG+TGG | + | chr2_1:2426880-2426899 | Msa0187710:CDS | 50.0% | |
| GAGAGAGAAACCTCTGCGAT+CGG | + | chr2_1:2427134-2427153 | Msa0187710:CDS | 50.0% | |
| AAGCGAAAATCCGATCGCAG+AGG | - | chr2_1:2427147-2427166 | None:intergenic | 50.0% | |
| CGGTAACAACACGGTGATTG+TGG | - | chr2_1:2427305-2427324 | None:intergenic | 50.0% | |
| ATTCGAGTCCGCAATCCTGA+AGG | + | chr2_1:2427429-2427448 | Msa0187710:CDS | 50.0% | |
| GGAAGAGTCCTTCAGGATTG+CGG | - | chr2_1:2427440-2427459 | None:intergenic | 50.0% | |
| ! | GCGATTTGGAAGAGTCCTTC+AGG | - | chr2_1:2427447-2427466 | None:intergenic | 50.0% |
| GAAGGACTCTTCCAAATCGC+TGG | + | chr2_1:2427447-2427466 | Msa0187710:CDS | 50.0% | |
| ACCGAAATTCGCCAGCGATT+TGG | - | chr2_1:2427461-2427480 | None:intergenic | 50.0% | |
| AAATCGCTGGCGAATTTCGG+TGG | + | chr2_1:2427460-2427479 | Msa0187710:CDS | 50.0% | |
| AATGGGGAATTCAACGACGG+AGG | - | chr2_1:2427574-2427593 | None:intergenic | 50.0% | |
| GGCAATGGGGAATTCAACGA+CGG | - | chr2_1:2427577-2427596 | None:intergenic | 50.0% | |
| ! | TCTTCAACACGTGGTGGAGA+AGG | + | chr2_1:2427762-2427781 | Msa0187710:CDS | 50.0% |
| CAATATCAATGGCAGAGGCG+AGG | + | chr2_1:2427926-2427945 | Msa0187710:CDS | 50.0% | |
| ! | CTTGGTGGATCTCTTCTGTG+TGG | + | chr2_1:2428170-2428189 | Msa0187710:CDS | 50.0% |
| ! | TGGTGGATCTCTTCTGTGTG+GGG | + | chr2_1:2428172-2428191 | Msa0187710:CDS | 50.0% |
| GCTAAAGGATCCGACGGAGA+AGG | - | chr2_1:2426783-2426802 | None:intergenic | 55.0% | |
| ACGCGTTTCTTCCGATGTGG+TGG | + | chr2_1:2426883-2426902 | Msa0187710:CDS | 55.0% | |
| GCTAAAGGATCCGACGGAGA+AGG | - | chr2_1:2426783-2426802 | None:intergenic | 55.0% | |
| ACGCGTTTCTTCCGATGTGG+TGG | + | chr2_1:2426883-2426902 | Msa0187710:CDS | 55.0% | |
| GAGAATAGCATGGGGCGCAG+TGG | + | chr2_1:2427873-2427892 | Msa0187710:CDS | 60.0% | |
| ATCAATGGCAGAGGCGAGGG+CGG | + | chr2_1:2427930-2427949 | Msa0187710:CDS | 60.0% | |
| GAGAATAGCATGGGGCGCAG+TGG | + | chr2_1:2427873-2427892 | Msa0187710:CDS | 60.0% | |
| ATCAATGGCAGAGGCGAGGG+CGG | + | chr2_1:2427930-2427949 | Msa0187710:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 2426389 | 2428215 | 2426389 | ID=Msa0187710;Name=Msa0187710 |
| chr2_1 | mRNA | 2426389 | 2428215 | 2426389 | ID=Msa0187710-mRNA-1;Parent=Msa0187710;Name=Msa0187710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|608 |
| chr2_1 | exon | 2426389 | 2428215 | 2426389 | ID=Msa0187710-mRNA-1:exon:1153;Parent=Msa0187710-mRNA-1 |
| chr2_1 | CDS | 2426389 | 2428215 | 2426389 | ID=Msa0187710-mRNA-1:cds;Parent=Msa0187710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
