AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054250 MtrunA17_Chr1g0150281 95.789 285 11 1 1 284 1 285 0.0 566
Msa0054250 MtrunA17_Chr3g0136961 59.122 296 90 9 1 275 1 286 1.06e-103 304
Msa0054250 MtrunA17_Chr2g0333851 47.727 264 118 7 24 275 58 313 3.41e-66 209
Msa0054250 MtrunA17_Chr4g0001361 42.182 275 124 8 25 275 51 314 2.38e-52 173
Msa0054250 MtrunA17_Chr1g0150271 43.500 200 86 7 90 276 53 238 1.64e-41 143
Msa0054250 MtrunA17_Chr7g0270831 28.448 348 153 9 6 274 71 401 3.62e-30 117
Msa0054250 MtrunA17_Chr2g0288871 33.333 213 98 4 28 196 150 362 2.21e-27 110
Msa0054250 MtrunA17_Chr3g0099641 33.010 206 80 5 124 271 236 441 1.76e-25 105
Msa0054250 MtrunA17_Chr4g0075201 30.332 211 98 5 25 196 124 324 2.05e-24 102
Msa0054250 MtrunA17_Chr4g0060271 57.333 75 32 0 122 196 238 312 4.47e-24 101
Msa0054250 MtrunA17_Chr4g0051181 52.564 78 37 0 119 196 223 300 5.50e-24 100
Msa0054250 MtrunA17_Chr7g0216891 46.739 92 49 0 122 213 202 293 1.25e-23 100
Msa0054250 MtrunA17_Chr2g0302391 40.323 124 63 3 91 205 156 277 3.45e-23 98.2
Msa0054250 MtrunA17_Chr2g0322391 48.889 90 46 0 124 213 334 423 4.51e-23 98.6
Msa0054250 MtrunA17_Chr4g0025051 43.000 100 57 0 116 215 312 411 2.22e-21 93.6
Msa0054250 MtrunA17_Chr4g0025061 45.652 92 50 0 124 215 345 436 1.16e-20 91.7
Msa0054250 MtrunA17_Chr3g0101131 34.483 145 82 5 62 196 330 471 2.45e-20 90.9
Msa0054250 MtrunA17_Chr1g0194481 41.667 96 51 2 123 218 146 236 3.53e-20 88.6
Msa0054250 MtrunA17_Chr5g0445311 57.895 57 23 1 140 196 365 420 1.88e-19 88.2
Msa0054250 MtrunA17_Chr5g0447701 52.703 74 32 2 124 197 239 309 2.61e-19 87.0
Msa0054250 MtrunA17_Chr5g0443131 47.297 74 34 2 123 196 145 213 3.73e-19 85.5
Msa0054250 MtrunA17_Chr4g0051881 57.895 57 23 1 140 196 179 234 4.35e-19 85.9
Msa0054250 MtrunA17_Chr7g0270191 48.052 77 37 2 120 196 128 201 5.02e-19 85.1
Msa0054250 MtrunA17_Chr5g0401821 52.632 57 27 0 140 196 200 256 7.07e-19 84.0
Msa0054250 MtrunA17_Chr1g0147881 36.538 104 55 1 93 196 227 319 1.05e-18 84.7
Msa0054250 MtrunA17_Chr4g0053281 49.231 65 33 0 140 204 267 331 1.56e-18 84.3
Msa0054250 MtrunA17_Chr5g0418781 47.297 74 34 2 123 196 112 180 1.59e-18 83.2
Msa0054250 MtrunA17_Chr1g0184691 47.945 73 36 1 127 197 279 351 2.33e-18 84.0
Msa0054250 MtrunA17_Chr5g0432161 47.945 73 35 2 124 196 408 477 3.21e-18 84.3
Msa0054250 MtrunA17_Chr5g0432161 50.877 57 26 2 140 196 245 299 1.24e-13 70.9
Msa0054250 MtrunA17_Chr7g0263531 50.746 67 32 1 130 196 352 417 3.21e-18 84.0
Msa0054250 MtrunA17_Chr7g0263531 53.125 64 28 2 140 203 190 251 3.62e-16 78.2
Msa0054250 MtrunA17_Chr2g0294231 47.297 74 34 2 123 196 191 259 3.25e-18 83.6
Msa0054250 MtrunA17_Chr5g0418191 47.945 73 35 2 124 196 307 376 4.52e-18 83.6
Msa0054250 MtrunA17_Chr5g0418191 52.632 57 25 2 140 196 152 206 1.27e-13 70.5
Msa0054250 MtrunA17_Chr4g0042831 46.341 82 38 3 115 196 259 334 7.47e-18 82.8
Msa0054250 MtrunA17_Chr4g0042831 47.368 57 29 1 140 196 146 201 6.46e-11 62.4
Msa0054250 MtrunA17_Chr7g0228941 52.632 57 27 0 140 196 53 109 8.18e-18 77.8
Msa0054250 MtrunA17_Chr7g0218081 47.945 73 35 2 124 196 397 466 1.84e-17 82.0
Msa0054250 MtrunA17_Chr7g0218081 49.123 57 27 2 140 196 229 283 2.06e-11 63.9
Msa0054250 MtrunA17_Chr1g0188941 50.877 57 27 1 140 196 52 107 2.29e-17 76.3
Msa0054250 MtrunA17_Chr3g0106491 46.575 73 36 2 124 196 352 421 3.85e-17 81.3
Msa0054250 MtrunA17_Chr3g0106491 50.877 57 26 2 140 196 199 253 3.20e-13 69.3
Msa0054250 MtrunA17_Chr7g0238921 56.140 57 24 1 140 196 125 180 5.92e-17 79.3
Msa0054250 MtrunA17_Chr8g0379461 51.724 58 28 0 140 197 77 134 6.82e-17 78.2
Msa0054250 MtrunA17_Chr1g0150801 50.877 57 27 1 140 196 103 158 1.29e-16 75.5
Msa0054250 MtrunA17_Chr4g0004911 41.304 92 48 3 105 196 307 392 1.56e-16 79.3
Msa0054250 MtrunA17_Chr4g0004911 41.026 78 45 1 140 217 185 261 2.94e-13 69.7
Msa0054250 MtrunA17_Chr3g0079691 34.921 126 70 4 124 240 482 604 1.81e-16 79.3
Msa0054250 MtrunA17_Chr3g0079691 50.877 57 26 2 140 196 281 335 5.69e-12 65.9
Msa0054250 MtrunA17_Chr2g0289181 34.426 122 73 3 140 254 15 136 1.81e-16 76.6
Msa0054250 MtrunA17_Chr3g0139021 52.632 57 27 0 140 196 315 371 2.07e-16 78.6
Msa0054250 MtrunA17_Chr7g0249301 44.737 76 39 2 121 196 276 348 2.68e-16 78.2
Msa0054250 MtrunA17_Chr4g0071521 50.000 58 29 0 140 197 246 303 2.99e-16 77.4
Msa0054250 MtrunA17_Chr8g0383351 52.632 57 26 1 140 196 161 216 3.07e-16 76.3
Msa0054250 MtrunA17_Chr2g0284321 49.123 57 29 0 140 196 36 92 3.12e-16 75.9
Msa0054250 MtrunA17_Chr3g0129361 52.632 57 26 1 140 196 145 200 3.18e-16 75.9
Msa0054250 MtrunA17_Chr7g0224801 51.613 62 29 1 140 201 94 154 3.20e-16 74.7
Msa0054250 MtrunA17_Chr7g0249311 32.919 161 90 7 113 262 365 518 3.64e-16 78.6
Msa0054250 MtrunA17_Chr7g0243891 45.205 73 37 2 124 196 361 430 6.31e-16 77.8
Msa0054250 MtrunA17_Chr7g0243891 47.368 57 28 2 140 196 217 271 6.94e-11 62.4
Msa0054250 MtrunA17_Chr4g0068541 45.205 73 37 2 124 196 195 264 7.28e-16 77.0
Msa0054250 MtrunA17_Chr8g0335811 52.632 57 26 1 140 196 155 210 1.47e-15 73.9
Msa0054250 MtrunA17_Chr2g0319961 52.632 57 27 0 140 196 81 137 2.60e-15 73.9
Msa0054250 MtrunA17_Chr8g0386241 43.939 66 36 1 140 205 104 168 4.37e-15 72.0
Msa0054250 MtrunA17_Chr4g0024391 36.957 92 58 0 124 215 214 305 5.34e-15 74.7
Msa0054250 MtrunA17_Chr4g0074001 50.877 57 27 1 140 196 360 415 5.50e-15 74.7
Msa0054250 MtrunA17_Chr2g0293481 42.857 77 39 1 125 196 248 324 1.33e-14 73.6
Msa0054250 MtrunA17_Chr8g0387501 43.478 69 39 0 140 208 130 198 1.59e-14 72.0
Msa0054250 MtrunA17_Chr3g0129321 49.123 57 28 1 140 196 119 174 3.41e-14 69.7
Msa0054250 MtrunA17_Chr8g0348311 38.554 83 50 1 140 222 156 237 3.48e-14 71.6
Msa0054250 MtrunA17_Chr7g0248721 48.485 66 32 2 140 205 142 205 4.65e-14 69.7
Msa0054250 MtrunA17_Chr7g0270051 47.368 57 30 0 140 196 54 110 7.20e-14 70.1
Msa0054250 MtrunA17_Chr7g0248691 47.368 57 30 0 140 196 155 211 1.22e-13 70.1
Msa0054250 MtrunA17_Chr8g0383251 45.614 57 30 1 140 196 109 164 1.35e-13 67.8
Msa0054250 MtrunA17_Chr1g0202461 36.842 76 48 0 140 215 262 337 2.52e-13 69.3
Msa0054250 MtrunA17_Chr6g0485431 38.636 88 48 4 111 197 130 212 2.82e-13 69.3
Msa0054250 MtrunA17_Chr1g0189391 40.244 82 45 3 124 204 84 162 4.76e-13 68.6
Msa0054250 MtrunA17_Chr8g0387981 50.877 57 26 1 140 194 133 189 3.64e-12 65.9
Msa0054250 MtrunA17_Chr3g0126391 50.877 57 26 1 140 194 134 190 6.53e-12 65.1
Msa0054250 MtrunA17_Chr5g0447711 46.479 71 36 2 126 196 218 286 7.07e-12 64.7
Msa0054250 MtrunA17_Chr7g0275531 41.975 81 43 2 124 202 105 183 1.83e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054250 AT1G80840.1 42.809 299 134 9 3 274 6 294 5.06e-69 216
Msa0054250 AT2G25000.1 42.222 270 110 7 19 278 36 269 2.71e-61 195
Msa0054250 AT2G25000.2 42.366 262 108 6 24 278 1 226 3.43e-61 194
Msa0054250 AT2G25000.4 42.366 262 108 6 24 278 1 226 3.43e-61 194
Msa0054250 AT4G31800.1 43.911 271 124 7 25 278 49 308 6.99e-61 196
Msa0054250 AT2G25000.3 42.264 265 110 6 21 278 20 248 1.29e-60 193
Msa0054250 AT4G31800.2 54.706 170 67 4 111 278 82 243 7.56e-54 175
Msa0054250 AT4G31800.3 44.048 168 75 4 25 176 49 213 3.35e-33 122
Msa0054250 AT4G01720.1 33.503 197 98 4 28 196 105 296 2.93e-24 102
Msa0054250 AT4G04450.2 48.913 92 47 0 124 215 183 274 5.52e-24 100
Msa0054250 AT4G04450.1 48.913 92 47 0 124 215 277 368 1.34e-23 100
Msa0054250 AT1G62300.1 30.952 210 107 5 25 196 160 369 1.76e-23 100
Msa0054250 AT4G22070.4 54.795 73 33 0 124 196 282 354 4.11e-23 99.0
Msa0054250 AT4G22070.3 54.795 73 33 0 124 196 282 354 4.11e-23 99.0
Msa0054250 AT4G22070.2 54.795 73 33 0 124 196 282 354 4.11e-23 99.0
Msa0054250 AT4G22070.1 54.795 73 33 0 124 196 282 354 4.11e-23 99.0
Msa0054250 AT1G68150.1 49.425 87 44 0 124 210 220 306 4.29e-23 97.8
Msa0054250 AT5G15130.2 52.703 74 35 0 140 213 186 259 3.34e-22 96.3
Msa0054250 AT5G15130.1 52.703 74 35 0 140 213 228 301 4.85e-22 95.9
Msa0054250 AT1G18860.1 64.912 57 20 0 140 196 240 296 1.45e-21 94.7
Msa0054250 AT1G64000.1 53.030 66 30 1 140 205 115 179 2.60e-19 84.0
Msa0054250 AT1G29860.1 53.333 60 27 1 137 196 134 192 7.15e-19 84.7
Msa0054250 AT4G18170.1 53.333 60 27 1 137 196 170 228 7.62e-19 85.1
Msa0054250 AT2G04880.2 57.627 59 24 1 138 196 282 339 1.10e-18 85.9
Msa0054250 AT5G41570.1 53.030 66 30 1 140 205 99 163 1.22e-18 82.0
Msa0054250 AT2G04880.1 57.627 59 24 1 138 196 306 363 1.24e-18 85.9
Msa0054250 AT2G47260.1 55.000 60 26 1 137 196 172 230 1.65e-18 84.3
Msa0054250 AT4G26640.5 49.315 73 34 2 124 196 192 261 1.98e-18 84.7
Msa0054250 AT4G26640.6 49.315 73 34 2 124 196 192 261 1.98e-18 84.7
Msa0054250 AT4G26640.4 49.315 73 34 2 124 196 192 261 1.98e-18 84.7
Msa0054250 AT4G26640.3 49.315 73 34 2 124 196 192 261 1.98e-18 84.7
Msa0054250 AT5G26170.1 50.877 57 27 1 140 196 114 169 2.14e-18 80.9
Msa0054250 AT5G07100.2 38.614 101 58 3 96 196 101 197 2.38e-18 82.0
Msa0054250 AT5G07100.2 45.070 71 38 1 126 196 11 80 2.39e-13 68.2
Msa0054250 AT5G07100.4 38.614 101 58 3 96 196 101 197 2.38e-18 82.0
Msa0054250 AT5G07100.4 45.070 71 38 1 126 196 11 80 2.39e-13 68.2
Msa0054250 AT5G07100.5 38.614 101 58 3 96 196 101 197 2.38e-18 82.0
Msa0054250 AT5G07100.5 45.070 71 38 1 126 196 11 80 2.39e-13 68.2
Msa0054250 AT5G07100.3 38.614 101 58 3 96 196 101 197 2.38e-18 82.0
Msa0054250 AT5G07100.3 45.070 71 38 1 126 196 11 80 2.39e-13 68.2
Msa0054250 AT1G13960.2 47.945 73 35 2 124 196 243 312 2.94e-18 84.0
Msa0054250 AT1G13960.2 50.877 57 26 2 140 196 77 131 1.85e-12 67.4
Msa0054250 AT4G26640.1 49.315 73 34 2 124 196 296 365 3.60e-18 84.3
Msa0054250 AT4G26640.7 49.315 73 34 2 124 196 328 397 3.70e-18 84.7
Msa0054250 AT4G26640.2 49.315 73 34 2 124 196 368 437 3.74e-18 84.7
Msa0054250 AT1G13960.1 47.945 73 35 2 124 196 396 465 4.80e-18 84.3
Msa0054250 AT1G13960.1 50.877 57 26 2 140 196 230 284 2.02e-12 67.4
Msa0054250 AT2G03340.1 47.945 73 35 2 124 196 402 471 4.97e-18 84.3
Msa0054250 AT2G03340.1 50.877 57 26 2 140 196 251 305 3.10e-13 70.1
Msa0054250 AT5G46350.1 47.222 72 33 2 125 196 173 239 5.92e-18 82.8
Msa0054250 AT5G07100.1 38.614 101 58 3 96 196 194 290 8.48e-18 82.0
Msa0054250 AT5G07100.1 42.308 78 44 1 126 203 104 180 6.63e-13 68.2
Msa0054250 AT4G31550.2 44.928 69 38 0 140 208 246 314 1.08e-17 82.0
Msa0054250 AT4G31550.1 44.928 69 38 0 140 208 247 315 1.11e-17 82.0
Msa0054250 AT5G49520.1 54.386 57 25 1 140 196 222 277 1.33e-17 82.4
Msa0054250 AT2G30590.1 52.632 57 27 0 140 196 314 370 2.16e-17 81.6
Msa0054250 AT1G69310.4 54.386 57 25 1 140 196 148 203 2.27e-17 80.5
Msa0054250 AT1G69310.2 54.386 57 25 1 140 196 148 203 2.27e-17 80.5
Msa0054250 AT1G69310.1 54.386 57 25 1 140 196 148 203 2.27e-17 80.5
Msa0054250 AT1G69810.2 50.000 74 36 1 124 196 130 203 2.50e-17 80.9
Msa0054250 AT5G28650.1 44.186 86 40 2 127 210 248 327 2.73e-17 80.9
Msa0054250 AT2G23320.1 49.123 57 29 0 140 196 241 297 2.76e-17 80.9
Msa0054250 AT1G69810.1 50.000 74 36 1 124 196 188 261 3.28e-17 81.3
Msa0054250 AT5G56270.1 47.945 73 35 2 124 196 474 543 3.51e-17 82.0
Msa0054250 AT5G56270.1 50.877 57 26 2 140 196 274 328 3.61e-11 63.9
Msa0054250 AT3G62340.1 51.562 64 30 1 133 196 112 174 3.72e-17 79.7
Msa0054250 AT5G13080.1 53.226 62 28 1 140 201 68 128 4.87e-17 76.6
Msa0054250 AT3G01080.1 46.575 73 36 2 124 196 293 362 7.04e-17 80.5
Msa0054250 AT3G01080.1 49.123 57 27 2 140 196 168 222 9.08e-11 62.4
Msa0054250 AT3G01080.2 46.575 73 36 2 124 196 331 400 7.09e-17 80.5
Msa0054250 AT3G01080.2 49.123 57 27 2 140 196 206 260 7.96e-11 62.8
Msa0054250 AT1G29280.1 50.877 57 28 0 140 196 75 131 1.14e-16 78.2
Msa0054250 AT2G24570.1 50.877 57 28 0 140 196 244 300 1.41e-16 79.0
Msa0054250 AT3G04670.1 44.444 72 38 1 127 196 248 319 1.45e-16 79.0
Msa0054250 AT2G38470.1 45.205 73 37 2 124 196 349 418 2.30e-16 79.3
Msa0054250 AT2G38470.1 50.877 57 26 2 140 196 185 239 4.04e-13 69.7
Msa0054250 AT4G24240.1 46.552 58 31 0 140 197 282 339 4.47e-16 77.8
Msa0054250 AT4G30935.1 52.632 57 26 1 140 196 332 387 8.34e-16 77.4
Msa0054250 AT2G44745.1 52.632 57 26 1 140 196 146 201 8.75e-16 75.1
Msa0054250 AT2G30250.1 45.205 73 37 2 124 196 315 384 1.64e-15 76.3
Msa0054250 AT2G30250.1 49.123 57 27 2 140 196 167 221 5.28e-11 63.2
Msa0054250 AT3G01970.1 49.180 61 30 1 140 200 66 125 3.20e-15 71.6
Msa0054250 AT2G37260.3 45.588 68 36 1 129 196 259 325 4.07e-15 75.1
Msa0054250 AT2G37260.3 46.479 71 36 2 126 196 72 140 5.47e-15 74.7
Msa0054250 AT2G37260.2 45.588 68 36 1 129 196 257 323 4.13e-15 74.7
Msa0054250 AT2G37260.2 46.479 71 36 2 126 196 70 138 5.46e-15 74.7
Msa0054250 AT1G55600.1 52.632 57 26 1 140 196 308 363 4.43e-15 75.5
Msa0054250 AT2G37260.1 45.588 68 36 1 129 196 339 405 4.57e-15 75.1
Msa0054250 AT2G37260.1 46.479 71 36 2 126 196 152 220 6.46e-15 74.7
Msa0054250 AT4G39410.1 50.877 57 27 1 140 196 224 279 5.25e-15 74.3
Msa0054250 AT2G21900.1 44.444 72 38 2 126 196 95 165 8.26e-15 72.0
Msa0054250 AT2G34830.1 47.692 65 34 0 132 196 208 272 8.68e-15 74.3
Msa0054250 AT2G34830.2 47.692 65 34 0 132 196 217 281 9.22e-15 74.3
Msa0054250 AT1G30650.1 47.692 65 34 0 132 196 210 274 1.87e-14 73.6
Msa0054250 AT3G58710.2 49.123 57 29 0 140 196 71 127 3.37e-14 71.2
Msa0054250 AT3G58710.1 49.123 57 29 0 140 196 72 128 3.44e-14 71.2
Msa0054250 AT5G64810.1 37.805 82 46 3 116 196 89 166 4.16e-14 69.7
Msa0054250 AT2G46130.1 50.877 57 27 1 140 196 31 86 6.87e-14 67.0
Msa0054250 AT5G52830.1 43.478 69 39 0 140 208 166 234 8.21e-14 71.2
Msa0054250 AT4G01250.1 45.614 57 31 0 140 196 129 185 1.25e-13 70.1
Msa0054250 AT5G43290.1 40.789 76 43 2 121 196 97 170 1.42e-13 69.7
Msa0054250 AT4G26440.1 43.836 73 38 2 124 196 359 428 1.52e-13 70.9
Msa0054250 AT4G26440.1 47.368 57 28 2 140 196 179 233 6.96e-11 62.8
Msa0054250 AT5G45050.2 34.951 103 64 1 94 196 1110 1209 2.22e-13 70.9
Msa0054250 AT5G45050.1 34.951 103 64 1 94 196 1138 1237 2.54e-13 70.5
Msa0054250 AT5G45050.4 34.951 103 64 1 94 196 999 1098 2.54e-13 70.5
Msa0054250 AT4G23550.1 30.714 140 88 4 138 275 139 271 5.85e-13 68.2
Msa0054250 AT1G69310.3 50.877 57 23 2 140 196 148 199 6.31e-13 67.8
Msa0054250 AT2G46400.1 40.698 86 46 3 111 194 79 161 2.52e-12 66.2
Msa0054250 AT3G01080.3 49.123 57 27 2 140 196 206 260 8.00e-11 62.0

Find 54 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTTCTGGAAGAATTT+TGG 0.107436 1_2:+8979324 Msa0054250:CDS
AATTGCTGAATAGATGATTT+TGG 0.158720 1_2:-8979238 None:intergenic
GCACTTGCCACTGCTATTTC+TGG 0.161803 1_2:+8979313 Msa0054250:CDS
TTTGGACCATACTTCTAATA+AGG 0.232805 1_2:+8979342 Msa0054250:CDS
GTCTTCACCTAAGGCTTATA+AGG 0.247602 1_2:+8978209 Msa0054250:CDS
GCAAGTGCCGTAGTGAAATT+AGG 0.318268 1_2:-8979298 None:intergenic
CAGAGTGAAGAAGCTCCTTT+AGG 0.328370 1_2:+8979145 Msa0054250:CDS
GGATATCAATGGAGGAAATA+TGG 0.328462 1_2:+8978412 Msa0054250:CDS
ATTTGGCCTTATTAGAAGTA+TGG 0.343403 1_2:-8979348 None:intergenic
AATATGTTTGGTAATGTTAG+AGG 0.347609 1_2:+8978108 Msa0054250:CDS
TACATGGAAATTTCACCATT+TGG 0.351460 1_2:-8979365 None:intergenic
TTGTGAACAGGACGAAGTTT+TGG 0.359854 1_2:+8977912 Msa0054250:intron
TGGAACATTATCAAGCTTCA+TGG 0.367214 1_2:-8979218 None:intergenic
GTTACCTAAAATATAGTTAA+GGG 0.368712 1_2:-8979508 None:intergenic
CCTCTCCTAGAGCTTACTTT+AGG 0.371319 1_2:+8978458 Msa0054250:CDS
TTGTATACGAACCTTGAGTA+TGG 0.372911 1_2:-8977257 None:intergenic
GAAAGTTGCATCAATATGTT+TGG 0.406359 1_2:+8978096 Msa0054250:CDS
TGTTACCTAAAATATAGTTA+AGG 0.406864 1_2:-8979509 None:intergenic
TATGTTGCAACTAGTATAGT+AGG 0.431061 1_2:-8979067 None:intergenic
TGGAAGGAACATTAACGTTA+AGG 0.438901 1_2:-8977237 None:intergenic
ATGAAGAATCATTAATCAAA+AGG 0.454669 1_2:+8978172 Msa0054250:CDS
ACAAGAACCTTATAAGCCTT+AGG 0.486641 1_2:-8978216 None:intergenic
CATTAATCAAAAGGCCATGT+AGG 0.493040 1_2:+8978181 Msa0054250:CDS
AACTGGGCAGCTTGGAGCAT+AGG 0.506437 1_2:-8978485 None:intergenic
ACATTATCAAGCTTCATGGT+TGG 0.511345 1_2:-8979214 None:intergenic
CTTTCAGCAGCAAATTGCAA+TGG 0.512836 1_2:+8977186 None:intergenic
ATACTTCTAATAAGGCCAAA+TGG 0.514058 1_2:+8979350 Msa0054250:CDS
TTTCTGCTTTCTCATGACCA+TGG 0.521784 1_2:-8979105 None:intergenic
TAGGGATATGTCTTCACCTA+AGG 0.525286 1_2:+8978200 Msa0054250:CDS
TAATGTTCCTTCCATACTCA+AGG 0.525940 1_2:+8977246 Msa0054250:CDS
GAGCACCTAAAGTAAGCTCT+AGG 0.538868 1_2:-8978463 None:intergenic
ATTAATCAAAAGGCCATGTA+GGG 0.538909 1_2:+8978182 Msa0054250:CDS
CCTAAAGTAAGCTCTAGGAG+AGG 0.548395 1_2:-8978458 None:intergenic
CTAAAGGAGCTTCTTCACTC+TGG 0.548870 1_2:-8979144 None:intergenic
GTAACATGAACTGAACCTAA+AGG 0.560432 1_2:-8979160 None:intergenic
GTCTTAGTTCTGAGAACAAG+AGG 0.567530 1_2:+8977950 Msa0054250:CDS
CTAAAGTAAGCTCTAGGAGA+GGG 0.569732 1_2:-8978457 None:intergenic
TTGTGGTATAAAGTATGTGA+TGG 0.581181 1_2:+8978387 Msa0054250:intron
ATGGAGGAAATATGGTCAGA+AGG 0.585738 1_2:+8978420 Msa0054250:CDS
GGTATAAAGTATGTGATGGA+TGG 0.592987 1_2:+8978391 Msa0054250:intron
ATGTGATGGATGGATATCAA+TGG 0.593080 1_2:+8978401 Msa0054250:CDS
AAATGATCCTAATTTCACTA+CGG 0.596547 1_2:+8979291 Msa0054250:CDS
ATGTTGCAACTAGTATAGTA+GGG 0.601976 1_2:-8979066 None:intergenic
TTCATGCACAACATTATACA+TGG 0.613548 1_2:-8979381 None:intergenic
TGCAATGGAATCAACTTGTG+TGG 0.619908 1_2:+8977201 Msa0054250:exon
ATACGAACCTTGAGTATGGA+AGG 0.630843 1_2:-8977253 None:intergenic
GGTGAAGACATATCCCTACA+TGG 0.630918 1_2:-8978195 None:intergenic
GTTCTTTGAATAATTTGTTG+AGG 0.631715 1_2:-8979187 None:intergenic
TAACATGTGTGAGAACTATG+AGG 0.644714 1_2:+8977990 Msa0054250:CDS
TAAAGTAAGCTCTAGGAGAG+GGG 0.664718 1_2:-8978456 None:intergenic
TGATGGATGGATATCAATGG+AGG 0.669535 1_2:+8978404 Msa0054250:CDS
ATACTAGTTGCAACATACGA+AGG 0.673327 1_2:+8979073 Msa0054250:CDS
AATTCTTCCAGAAATAGCAG+TGG 0.680346 1_2:-8979320 None:intergenic
TACGAAGGAGAGCACAACCA+TGG 0.683428 1_2:+8979088 Msa0054250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTAATTCATAATCA+AGG + chr1_2:8977448-8977467 Msa0054250:intron 10.0%
!! TATACTAATTTCATTAAAAT+TGG + chr1_2:8977815-8977834 Msa0054250:intron 10.0%
!! AATTGAAAATTAATTAATCA+AGG - chr1_2:8978362-8978381 None:intergenic 10.0%
!!! TAATTTTCAATTTTTATTTG+TGG + chr1_2:8978370-8978389 Msa0054250:intron 10.0%
!! AAAATATTAATTCATAATCA+AGG + chr1_2:8977448-8977467 Msa0054250:intron 10.0%
!! TATACTAATTTCATTAAAAT+TGG + chr1_2:8977815-8977834 Msa0054250:intron 10.0%
!! AATTGAAAATTAATTAATCA+AGG - chr1_2:8978362-8978381 None:intergenic 10.0%
!!! TAATTTTCAATTTTTATTTG+TGG + chr1_2:8978370-8978389 Msa0054250:intron 10.0%
!! TATATTTATACTAATGATGT+AGG + chr1_2:8977658-8977677 Msa0054250:intron 15.0%
!! CAGATGTATATAAAAAATTA+AGG + chr1_2:8979467-8979486 Msa0054250:three_prime_UTR 15.0%
!! TATATTTATACTAATGATGT+AGG + chr1_2:8977658-8977677 Msa0054250:intron 15.0%
!! CAGATGTATATAAAAAATTA+AGG + chr1_2:8979467-8979486 Msa0054250:three_prime_UTR 15.0%
!! AAAAATTACACTAGTTAACA+AGG + chr1_2:8977333-8977352 Msa0054250:intron 20.0%
!! ATGAAGAATCATTAATCAAA+AGG + chr1_2:8978172-8978191 Msa0054250:CDS 20.0%
!!! TTATTACCTTCTTTTTAACT+GGG - chr1_2:8978504-8978523 None:intergenic 20.0%
!!! ATTATTACCTTCTTTTTAAC+TGG - chr1_2:8978505-8978524 None:intergenic 20.0%
!! ATTCTTTCTCATCAATATAT+TGG - chr1_2:8978748-8978767 None:intergenic 20.0%
!!! TATTGATGAGAAAGAATTTT+AGG + chr1_2:8978751-8978770 Msa0054250:intron 20.0%
!!! ATTGATGAGAAAGAATTTTA+GGG + chr1_2:8978752-8978771 Msa0054250:intron 20.0%
!!! ATCAAAATTTGATCTTGTTT+GGG - chr1_2:8979004-8979023 None:intergenic 20.0%
!!! TAATCCCTTAACTATATTTT+AGG + chr1_2:8979504-8979523 Msa0054250:three_prime_UTR 20.0%
!! GTTACCTAAAATATAGTTAA+GGG - chr1_2:8979511-8979530 None:intergenic 20.0%
!! TGTTACCTAAAATATAGTTA+AGG - chr1_2:8979512-8979531 None:intergenic 20.0%
!! AAAAATTACACTAGTTAACA+AGG + chr1_2:8977333-8977352 Msa0054250:intron 20.0%
!! ATGAAGAATCATTAATCAAA+AGG + chr1_2:8978172-8978191 Msa0054250:CDS 20.0%
!!! TTATTACCTTCTTTTTAACT+GGG - chr1_2:8978504-8978523 None:intergenic 20.0%
!!! ATTATTACCTTCTTTTTAAC+TGG - chr1_2:8978505-8978524 None:intergenic 20.0%
!! ATTCTTTCTCATCAATATAT+TGG - chr1_2:8978748-8978767 None:intergenic 20.0%
!!! TATTGATGAGAAAGAATTTT+AGG + chr1_2:8978751-8978770 Msa0054250:intron 20.0%
!!! ATTGATGAGAAAGAATTTTA+GGG + chr1_2:8978752-8978771 Msa0054250:intron 20.0%
!!! ATCAAAATTTGATCTTGTTT+GGG - chr1_2:8979004-8979023 None:intergenic 20.0%
!!! TAATCCCTTAACTATATTTT+AGG + chr1_2:8979504-8979523 Msa0054250:three_prime_UTR 20.0%
!! GTTACCTAAAATATAGTTAA+GGG - chr1_2:8979511-8979530 None:intergenic 20.0%
!! TGTTACCTAAAATATAGTTA+AGG - chr1_2:8979512-8979531 None:intergenic 20.0%
!!! TTTAATTTTCATGCATGATC+AGG + chr1_2:8977304-8977323 Msa0054250:intron 25.0%
!! TTAATTTTCATGCATGATCA+GGG + chr1_2:8977305-8977324 Msa0054250:intron 25.0%
! AAACTTTATAGATTCGTTCA+AGG - chr1_2:8977380-8977399 None:intergenic 25.0%
! TCAATCAATCTTAACTACTA+TGG - chr1_2:8977626-8977645 None:intergenic 25.0%
! CACTATATATACACCTAAAA+AGG + chr1_2:8977718-8977737 Msa0054250:intron 25.0%
!! TTTTCTTTGATTGTTGTGTT+TGG - chr1_2:8978062-8978081 None:intergenic 25.0%
!!! AATATGTTTGGTAATGTTAG+AGG + chr1_2:8978108-8978127 Msa0054250:CDS 25.0%
! ATGTTAAGAATACACATGTT+TGG - chr1_2:8978564-8978583 None:intergenic 25.0%
! TTTCGATAGAGATTACTAAT+AGG - chr1_2:8978617-8978636 None:intergenic 25.0%
! AAAAATTTGACAAGAACCTT+CGG + chr1_2:8978634-8978653 Msa0054250:intron 25.0%
!! TATATGAAAACATGCGATTT+TGG - chr1_2:8978673-8978692 None:intergenic 25.0%
!! GTAAACAAATGCTAAGATTT+TGG + chr1_2:8978954-8978973 Msa0054250:intron 25.0%
! GATCAAAATTTGATCTTGTT+TGG - chr1_2:8979005-8979024 None:intergenic 25.0%
!! CTCTTGTGTCATTATTAATT+AGG + chr1_2:8979024-8979043 Msa0054250:intron 25.0%
!!! GTTCTTTGAATAATTTGTTG+AGG - chr1_2:8979190-8979209 None:intergenic 25.0%
!! AATTGCTGAATAGATGATTT+TGG - chr1_2:8979241-8979260 None:intergenic 25.0%
!! ATCATCTATTCAGCAATTTT+TGG + chr1_2:8979243-8979262 Msa0054250:CDS 25.0%
! AAATGATCCTAATTTCACTA+CGG + chr1_2:8979291-8979310 Msa0054250:CDS 25.0%
!!! TTTAATTTTCATGCATGATC+AGG + chr1_2:8977304-8977323 Msa0054250:intron 25.0%
!! TTAATTTTCATGCATGATCA+GGG + chr1_2:8977305-8977324 Msa0054250:intron 25.0%
! AAACTTTATAGATTCGTTCA+AGG - chr1_2:8977380-8977399 None:intergenic 25.0%
! TCAATCAATCTTAACTACTA+TGG - chr1_2:8977626-8977645 None:intergenic 25.0%
! CACTATATATACACCTAAAA+AGG + chr1_2:8977718-8977737 Msa0054250:intron 25.0%
!! TTTTCTTTGATTGTTGTGTT+TGG - chr1_2:8978062-8978081 None:intergenic 25.0%
!!! AATATGTTTGGTAATGTTAG+AGG + chr1_2:8978108-8978127 Msa0054250:CDS 25.0%
! ATGTTAAGAATACACATGTT+TGG - chr1_2:8978564-8978583 None:intergenic 25.0%
! TTTCGATAGAGATTACTAAT+AGG - chr1_2:8978617-8978636 None:intergenic 25.0%
! AAAAATTTGACAAGAACCTT+CGG + chr1_2:8978634-8978653 Msa0054250:intron 25.0%
!! TATATGAAAACATGCGATTT+TGG - chr1_2:8978673-8978692 None:intergenic 25.0%
!! GTAAACAAATGCTAAGATTT+TGG + chr1_2:8978954-8978973 Msa0054250:intron 25.0%
! GATCAAAATTTGATCTTGTT+TGG - chr1_2:8979005-8979024 None:intergenic 25.0%
!! CTCTTGTGTCATTATTAATT+AGG + chr1_2:8979024-8979043 Msa0054250:intron 25.0%
!!! GTTCTTTGAATAATTTGTTG+AGG - chr1_2:8979190-8979209 None:intergenic 25.0%
!! AATTGCTGAATAGATGATTT+TGG - chr1_2:8979241-8979260 None:intergenic 25.0%
!! ATCATCTATTCAGCAATTTT+TGG + chr1_2:8979243-8979262 Msa0054250:CDS 25.0%
! AAATGATCCTAATTTCACTA+CGG + chr1_2:8979291-8979310 Msa0054250:CDS 25.0%
ATTACACTAGTTAACAAGGT+TGG + chr1_2:8977337-8977356 Msa0054250:intron 30.0%
!!! CTTAGGGCACAAATTTTTTT+GGG - chr1_2:8977571-8977590 None:intergenic 30.0%
!!! ACTTAGGGCACAAATTTTTT+TGG - chr1_2:8977572-8977591 None:intergenic 30.0%
TCAATCTTAACTACTATGGA+TGG - chr1_2:8977622-8977641 None:intergenic 30.0%
! ATCGCTAATTCAACCTTTTT+AGG - chr1_2:8977734-8977753 None:intergenic 30.0%
! CAATGTCACTTAGAAATTCA+GGG - chr1_2:8977886-8977905 None:intergenic 30.0%
! ACATTGGAAATTTTGTGAAC+AGG + chr1_2:8977900-8977919 Msa0054250:intron 30.0%
GAAAGTTGCATCAATATGTT+TGG + chr1_2:8978096-8978115 Msa0054250:CDS 30.0%
ATTAATCAAAAGGCCATGTA+GGG + chr1_2:8978182-8978201 Msa0054250:CDS 30.0%
TTGTGGTATAAAGTATGTGA+TGG + chr1_2:8978387-8978406 Msa0054250:intron 30.0%
AGATTACTAATAGGTGAAGT+AGG - chr1_2:8978608-8978627 None:intergenic 30.0%
! CATCAATATATTGGTCTAAG+TGG - chr1_2:8978739-8978758 None:intergenic 30.0%
ATGTTGCAACTAGTATAGTA+GGG - chr1_2:8979069-8979088 None:intergenic 30.0%
TATGTTGCAACTAGTATAGT+AGG - chr1_2:8979070-8979089 None:intergenic 30.0%
!!! GCAATTTTTGGTTCAACAAA+TGG + chr1_2:8979255-8979274 Msa0054250:CDS 30.0%
!!! TGCTATTTCTGGAAGAATTT+TGG + chr1_2:8979324-8979343 Msa0054250:CDS 30.0%
TTTGGACCATACTTCTAATA+AGG + chr1_2:8979342-8979361 Msa0054250:CDS 30.0%
!! ATTTGGCCTTATTAGAAGTA+TGG - chr1_2:8979351-8979370 None:intergenic 30.0%
ATACTTCTAATAAGGCCAAA+TGG + chr1_2:8979350-8979369 Msa0054250:CDS 30.0%
TACATGGAAATTTCACCATT+TGG - chr1_2:8979368-8979387 None:intergenic 30.0%
TTCATGCACAACATTATACA+TGG - chr1_2:8979384-8979403 None:intergenic 30.0%
ATTACACTAGTTAACAAGGT+TGG + chr1_2:8977337-8977356 Msa0054250:intron 30.0%
!!! CTTAGGGCACAAATTTTTTT+GGG - chr1_2:8977571-8977590 None:intergenic 30.0%
!!! ACTTAGGGCACAAATTTTTT+TGG - chr1_2:8977572-8977591 None:intergenic 30.0%
TCAATCTTAACTACTATGGA+TGG - chr1_2:8977622-8977641 None:intergenic 30.0%
! ATCGCTAATTCAACCTTTTT+AGG - chr1_2:8977734-8977753 None:intergenic 30.0%
! CAATGTCACTTAGAAATTCA+GGG - chr1_2:8977886-8977905 None:intergenic 30.0%
! ACATTGGAAATTTTGTGAAC+AGG + chr1_2:8977900-8977919 Msa0054250:intron 30.0%
GAAAGTTGCATCAATATGTT+TGG + chr1_2:8978096-8978115 Msa0054250:CDS 30.0%
ATTAATCAAAAGGCCATGTA+GGG + chr1_2:8978182-8978201 Msa0054250:CDS 30.0%
TTGTGGTATAAAGTATGTGA+TGG + chr1_2:8978387-8978406 Msa0054250:intron 30.0%
AGATTACTAATAGGTGAAGT+AGG - chr1_2:8978608-8978627 None:intergenic 30.0%
! CATCAATATATTGGTCTAAG+TGG - chr1_2:8978739-8978758 None:intergenic 30.0%
ATGTTGCAACTAGTATAGTA+GGG - chr1_2:8979069-8979088 None:intergenic 30.0%
TATGTTGCAACTAGTATAGT+AGG - chr1_2:8979070-8979089 None:intergenic 30.0%
!!! GCAATTTTTGGTTCAACAAA+TGG + chr1_2:8979255-8979274 Msa0054250:CDS 30.0%
!!! TGCTATTTCTGGAAGAATTT+TGG + chr1_2:8979324-8979343 Msa0054250:CDS 30.0%
TTTGGACCATACTTCTAATA+AGG + chr1_2:8979342-8979361 Msa0054250:CDS 30.0%
!! ATTTGGCCTTATTAGAAGTA+TGG - chr1_2:8979351-8979370 None:intergenic 30.0%
ATACTTCTAATAAGGCCAAA+TGG + chr1_2:8979350-8979369 Msa0054250:CDS 30.0%
TACATGGAAATTTCACCATT+TGG - chr1_2:8979368-8979387 None:intergenic 30.0%
TTCATGCACAACATTATACA+TGG - chr1_2:8979384-8979403 None:intergenic 30.0%
TGGAAGGAACATTAACGTTA+AGG - chr1_2:8977240-8977259 None:intergenic 35.0%
TAATGTTCCTTCCATACTCA+AGG + chr1_2:8977246-8977265 Msa0054250:CDS 35.0%
TTGTATACGAACCTTGAGTA+TGG - chr1_2:8977260-8977279 None:intergenic 35.0%
! CCAATGTCACTTAGAAATTC+AGG - chr1_2:8977887-8977906 None:intergenic 35.0%
CCTGAATTTCTAAGTGACAT+TGG + chr1_2:8977884-8977903 Msa0054250:intron 35.0%
TAACATGTGTGAGAACTATG+AGG + chr1_2:8977990-8978009 Msa0054250:CDS 35.0%
CATTAATCAAAAGGCCATGT+AGG + chr1_2:8978181-8978200 Msa0054250:CDS 35.0%
ACAAGAACCTTATAAGCCTT+AGG - chr1_2:8978219-8978238 None:intergenic 35.0%
! GGTATAAAGTATGTGATGGA+TGG + chr1_2:8978391-8978410 Msa0054250:intron 35.0%
!! ATGTGATGGATGGATATCAA+TGG + chr1_2:8978401-8978420 Msa0054250:CDS 35.0%
GGATATCAATGGAGGAAATA+TGG + chr1_2:8978412-8978431 Msa0054250:CDS 35.0%
TTACTAATAGGTGAAGTAGG+CGG - chr1_2:8978605-8978624 None:intergenic 35.0%
!! TGAAAACATGCGATTTTGGT+AGG - chr1_2:8978669-8978688 None:intergenic 35.0%
ATACTAGTTGCAACATACGA+AGG + chr1_2:8979073-8979092 Msa0054250:CDS 35.0%
GTAACATGAACTGAACCTAA+AGG - chr1_2:8979163-8979182 None:intergenic 35.0%
ACATTATCAAGCTTCATGGT+TGG - chr1_2:8979217-8979236 None:intergenic 35.0%
TGGAACATTATCAAGCTTCA+TGG - chr1_2:8979221-8979240 None:intergenic 35.0%
AATTCTTCCAGAAATAGCAG+TGG - chr1_2:8979323-8979342 None:intergenic 35.0%
TGGAAGGAACATTAACGTTA+AGG - chr1_2:8977240-8977259 None:intergenic 35.0%
TAATGTTCCTTCCATACTCA+AGG + chr1_2:8977246-8977265 Msa0054250:CDS 35.0%
TTGTATACGAACCTTGAGTA+TGG - chr1_2:8977260-8977279 None:intergenic 35.0%
! CCAATGTCACTTAGAAATTC+AGG - chr1_2:8977887-8977906 None:intergenic 35.0%
CCTGAATTTCTAAGTGACAT+TGG + chr1_2:8977884-8977903 Msa0054250:intron 35.0%
TAACATGTGTGAGAACTATG+AGG + chr1_2:8977990-8978009 Msa0054250:CDS 35.0%
CATTAATCAAAAGGCCATGT+AGG + chr1_2:8978181-8978200 Msa0054250:CDS 35.0%
ACAAGAACCTTATAAGCCTT+AGG - chr1_2:8978219-8978238 None:intergenic 35.0%
! GGTATAAAGTATGTGATGGA+TGG + chr1_2:8978391-8978410 Msa0054250:intron 35.0%
!! ATGTGATGGATGGATATCAA+TGG + chr1_2:8978401-8978420 Msa0054250:CDS 35.0%
GGATATCAATGGAGGAAATA+TGG + chr1_2:8978412-8978431 Msa0054250:CDS 35.0%
TTACTAATAGGTGAAGTAGG+CGG - chr1_2:8978605-8978624 None:intergenic 35.0%
!! TGAAAACATGCGATTTTGGT+AGG - chr1_2:8978669-8978688 None:intergenic 35.0%
ATACTAGTTGCAACATACGA+AGG + chr1_2:8979073-8979092 Msa0054250:CDS 35.0%
GTAACATGAACTGAACCTAA+AGG - chr1_2:8979163-8979182 None:intergenic 35.0%
ACATTATCAAGCTTCATGGT+TGG - chr1_2:8979217-8979236 None:intergenic 35.0%
TGGAACATTATCAAGCTTCA+TGG - chr1_2:8979221-8979240 None:intergenic 35.0%
AATTCTTCCAGAAATAGCAG+TGG - chr1_2:8979323-8979342 None:intergenic 35.0%
TGCAATGGAATCAACTTGTG+TGG + chr1_2:8977201-8977220 Msa0054250:exon 40.0%
ATACGAACCTTGAGTATGGA+AGG - chr1_2:8977256-8977275 None:intergenic 40.0%
AACTACTATGGATGGCCTTT+AGG - chr1_2:8977614-8977633 None:intergenic 40.0%
! TTGTGAACAGGACGAAGTTT+TGG + chr1_2:8977912-8977931 Msa0054250:intron 40.0%
!! GTCTTAGTTCTGAGAACAAG+AGG + chr1_2:8977950-8977969 Msa0054250:CDS 40.0%
TAGGGATATGTCTTCACCTA+AGG + chr1_2:8978200-8978219 Msa0054250:CDS 40.0%
GTCTTCACCTAAGGCTTATA+AGG + chr1_2:8978209-8978228 Msa0054250:CDS 40.0%
! TGATGGATGGATATCAATGG+AGG + chr1_2:8978404-8978423 Msa0054250:CDS 40.0%
ATGGAGGAAATATGGTCAGA+AGG + chr1_2:8978420-8978439 Msa0054250:CDS 40.0%
!! TAAAGTAAGCTCTAGGAGAG+GGG - chr1_2:8978459-8978478 None:intergenic 40.0%
!! CTAAAGTAAGCTCTAGGAGA+GGG - chr1_2:8978460-8978479 None:intergenic 40.0%
!! TTCTTTTTAACTGGGCAGCT+TGG - chr1_2:8978496-8978515 None:intergenic 40.0%
AAGCTGCCCAGTTAAAAAGA+AGG + chr1_2:8978495-8978514 Msa0054250:CDS 40.0%
AATTTGACAAGAACCTTCGG+TGG + chr1_2:8978637-8978656 Msa0054250:intron 40.0%
ATTTGACAAGAACCTTCGGT+GGG + chr1_2:8978638-8978657 Msa0054250:intron 40.0%
TTTCTGCTTTCTCATGACCA+TGG - chr1_2:8979108-8979127 None:intergenic 40.0%
TGCAATGGAATCAACTTGTG+TGG + chr1_2:8977201-8977220 Msa0054250:exon 40.0%
ATACGAACCTTGAGTATGGA+AGG - chr1_2:8977256-8977275 None:intergenic 40.0%
AACTACTATGGATGGCCTTT+AGG - chr1_2:8977614-8977633 None:intergenic 40.0%
! TTGTGAACAGGACGAAGTTT+TGG + chr1_2:8977912-8977931 Msa0054250:intron 40.0%
!! GTCTTAGTTCTGAGAACAAG+AGG + chr1_2:8977950-8977969 Msa0054250:CDS 40.0%
TAGGGATATGTCTTCACCTA+AGG + chr1_2:8978200-8978219 Msa0054250:CDS 40.0%
GTCTTCACCTAAGGCTTATA+AGG + chr1_2:8978209-8978228 Msa0054250:CDS 40.0%
! TGATGGATGGATATCAATGG+AGG + chr1_2:8978404-8978423 Msa0054250:CDS 40.0%
ATGGAGGAAATATGGTCAGA+AGG + chr1_2:8978420-8978439 Msa0054250:CDS 40.0%
!! TAAAGTAAGCTCTAGGAGAG+GGG - chr1_2:8978459-8978478 None:intergenic 40.0%
!! CTAAAGTAAGCTCTAGGAGA+GGG - chr1_2:8978460-8978479 None:intergenic 40.0%
!! TTCTTTTTAACTGGGCAGCT+TGG - chr1_2:8978496-8978515 None:intergenic 40.0%
AAGCTGCCCAGTTAAAAAGA+AGG + chr1_2:8978495-8978514 Msa0054250:CDS 40.0%
AATTTGACAAGAACCTTCGG+TGG + chr1_2:8978637-8978656 Msa0054250:intron 40.0%
ATTTGACAAGAACCTTCGGT+GGG + chr1_2:8978638-8978657 Msa0054250:intron 40.0%
TTTCTGCTTTCTCATGACCA+TGG - chr1_2:8979108-8979127 None:intergenic 40.0%
! CTATGGATGGCCTTTAGGTT+GGG - chr1_2:8977609-8977628 None:intergenic 45.0%
ACTATGGATGGCCTTTAGGT+TGG - chr1_2:8977610-8977629 None:intergenic 45.0%
GGTGAAGACATATCCCTACA+TGG - chr1_2:8978198-8978217 None:intergenic 45.0%
!! CCTAAAGTAAGCTCTAGGAG+AGG - chr1_2:8978461-8978480 None:intergenic 45.0%
CCTCTCCTAGAGCTTACTTT+AGG + chr1_2:8978458-8978477 Msa0054250:CDS 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1_2:8978466-8978485 None:intergenic 45.0%
CTAAAGGAGCTTCTTCACTC+TGG - chr1_2:8979147-8979166 None:intergenic 45.0%
CAGAGTGAAGAAGCTCCTTT+AGG + chr1_2:8979145-8979164 Msa0054250:CDS 45.0%
! GCAAGTGCCGTAGTGAAATT+AGG - chr1_2:8979301-8979320 None:intergenic 45.0%
! CTATGGATGGCCTTTAGGTT+GGG - chr1_2:8977609-8977628 None:intergenic 45.0%
ACTATGGATGGCCTTTAGGT+TGG - chr1_2:8977610-8977629 None:intergenic 45.0%
GGTGAAGACATATCCCTACA+TGG - chr1_2:8978198-8978217 None:intergenic 45.0%
!! CCTAAAGTAAGCTCTAGGAG+AGG - chr1_2:8978461-8978480 None:intergenic 45.0%
CCTCTCCTAGAGCTTACTTT+AGG + chr1_2:8978458-8978477 Msa0054250:CDS 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1_2:8978466-8978485 None:intergenic 45.0%
CTAAAGGAGCTTCTTCACTC+TGG - chr1_2:8979147-8979166 None:intergenic 45.0%
CAGAGTGAAGAAGCTCCTTT+AGG + chr1_2:8979145-8979164 Msa0054250:CDS 45.0%
! GCAAGTGCCGTAGTGAAATT+AGG - chr1_2:8979301-8979320 None:intergenic 45.0%
TGGTAGGAAAAACCCACCGA+AGG - chr1_2:8978653-8978672 None:intergenic 50.0%
! TACGAAGGAGAGCACAACCA+TGG + chr1_2:8979088-8979107 Msa0054250:CDS 50.0%
!! GCACTTGCCACTGCTATTTC+TGG + chr1_2:8979313-8979332 Msa0054250:CDS 50.0%
TGGTAGGAAAAACCCACCGA+AGG - chr1_2:8978653-8978672 None:intergenic 50.0%
! TACGAAGGAGAGCACAACCA+TGG + chr1_2:8979088-8979107 Msa0054250:CDS 50.0%
!! GCACTTGCCACTGCTATTTC+TGG + chr1_2:8979313-8979332 Msa0054250:CDS 50.0%
AACTGGGCAGCTTGGAGCAT+AGG - chr1_2:8978488-8978507 None:intergenic 55.0%
AACTGGGCAGCTTGGAGCAT+AGG - chr1_2:8978488-8978507 None:intergenic 55.0%
GCAGGAGGGGCGGAAACTTA+GGG - chr1_2:8977587-8977606 None:intergenic 60.0%
!! TTTAGGTTGGGCAGGAGGGG+CGG - chr1_2:8977597-8977616 None:intergenic 60.0%
!! GCCTTTAGGTTGGGCAGGAG+GGG - chr1_2:8977600-8977619 None:intergenic 60.0%
!! GGCCTTTAGGTTGGGCAGGA+GGG - chr1_2:8977601-8977620 None:intergenic 60.0%
!! TGGCCTTTAGGTTGGGCAGG+AGG - chr1_2:8977602-8977621 None:intergenic 60.0%
!! GGATGGCCTTTAGGTTGGGC+AGG - chr1_2:8977605-8977624 None:intergenic 60.0%
GCAGGAGGGGCGGAAACTTA+GGG - chr1_2:8977587-8977606 None:intergenic 60.0%
!! TTTAGGTTGGGCAGGAGGGG+CGG - chr1_2:8977597-8977616 None:intergenic 60.0%
!! GCCTTTAGGTTGGGCAGGAG+GGG - chr1_2:8977600-8977619 None:intergenic 60.0%
!! GGCCTTTAGGTTGGGCAGGA+GGG - chr1_2:8977601-8977620 None:intergenic 60.0%
!! TGGCCTTTAGGTTGGGCAGG+AGG - chr1_2:8977602-8977621 None:intergenic 60.0%
!! GGATGGCCTTTAGGTTGGGC+AGG - chr1_2:8977605-8977624 None:intergenic 60.0%
GGCAGGAGGGGCGGAAACTT+AGG - chr1_2:8977588-8977607 None:intergenic 65.0%
GCCCCTCCTGCCCAACCTAA+AGG + chr1_2:8977596-8977615 Msa0054250:intron 65.0%
GGCAGGAGGGGCGGAAACTT+AGG - chr1_2:8977588-8977607 None:intergenic 65.0%
GCCCCTCCTGCCCAACCTAA+AGG + chr1_2:8977596-8977615 Msa0054250:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 8977195 8979531 8977195 ID=Msa0054250;Name=Msa0054250
chr1_2 mRNA 8977195 8979531 8977195 ID=Msa0054250-mRNA-1;Parent=Msa0054250;Name=Msa0054250-mRNA-1;_AED=0.33;_eAED=0.33;_QI=10|1|1|1|1|1|4|156|284
chr1_2 exon 8977195 8977267 8977195 ID=Msa0054250-mRNA-1:exon:3199;Parent=Msa0054250-mRNA-1
chr1_2 exon 8977922 8978266 8977922 ID=Msa0054250-mRNA-1:exon:3200;Parent=Msa0054250-mRNA-1
chr1_2 exon 8978400 8978516 8978400 ID=Msa0054250-mRNA-1:exon:3201;Parent=Msa0054250-mRNA-1
chr1_2 exon 8979046 8979531 8979046 ID=Msa0054250-mRNA-1:exon:3202;Parent=Msa0054250-mRNA-1
chr1_2 five_prime_UTR 8977195 8977204 8977195 ID=Msa0054250-mRNA-1:five_prime_utr;Parent=Msa0054250-mRNA-1
chr1_2 CDS 8977205 8977267 8977205 ID=Msa0054250-mRNA-1:cds;Parent=Msa0054250-mRNA-1
chr1_2 CDS 8977922 8978266 8977922 ID=Msa0054250-mRNA-1:cds;Parent=Msa0054250-mRNA-1
chr1_2 CDS 8978400 8978516 8978400 ID=Msa0054250-mRNA-1:cds;Parent=Msa0054250-mRNA-1
chr1_2 CDS 8979046 8979375 8979046 ID=Msa0054250-mRNA-1:cds;Parent=Msa0054250-mRNA-1
chr1_2 three_prime_UTR 8979376 8979531 8979376 ID=Msa0054250-mRNA-1:three_prime_utr;Parent=Msa0054250-mRNA-1
Gene Sequence

>Msa0054250

ATGGAATCAACTTGTGTGGATACTTCACTTAACCTTAACGTTAATGTTCCTTCCATACTCAAGGACGAAGTTTTGGTTGAAGAGTTACATCGTCTTAGTTCTGAGAACAAGAGGCTAAATGAAACATTGACTAACATGTGTGAGAACTATGAGGCTATGCAAAAGCAATTGAATCAATTGATGAATCAAAATTTTGAAAACCAAACACAACAATCAAAGAAAAGAAAAGCTGAGAGTGAAAGTTGCATCAATATGTTTGGTAATGTTAGAGGCATTAATATTATCAATAATAATGAGTGCAGCACTGTTACTGATGAAGAATCATTAATCAAAAGGCCATGTAGGGATATGTCTTCACCTAAGGCTTATAAGGTTCTTGTGAAGACAGAAGCATCTAGTAATAGCTTATATGTGATGGATGGATATCAATGGAGGAAATATGGTCAGAAGGTTACTAGAGATAACCCCTCTCCTAGAGCTTACTTTAGGTGCTCCTATGCTCCAAGCTGCCCAGTTAAAAAGAAGGTGCAAAAAAGTGTAGAAGACCCTACTATACTAGTTGCAACATACGAAGGAGAGCACAACCATGGTCATGAGAAAGCAGAAAAATCAATGATATCAAGCCAGAGTGAAGAAGCTCCTTTAGGTTCAGTTCATGTTACTTCACCTCAACAAATTATTCAAAGAACATGTCCAACCATGAAGCTTGATAATGTTCCAAAATCATCTATTCAGCAATTTTTGGTTCAACAAATGGCTACTTCTTTAACAAATGATCCTAATTTCACTACGGCACTTGCCACTGCTATTTCTGGAAGAATTTTGGACCATACTTCTAATAAGGCCAAATGGTGA
Protein sequence

>Msa0054250

MESTCVDTSLNLNVNVPSILKDEVLVEELHRLSSENKRLNETLTNMCENYEAMQKQLNQLMNQNFENQTQQSKKRKAESESCINMFGNVRGINIINNNECSTVTDEESLIKRPCRDMSSPKAYKVLVKTEASSNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSYAPSCPVKKKVQKSVEDPTILVATYEGEHNHGHEKAEKSMISSQSEEAPLGSVHVTSPQQIIQRTCPTMKLDNVPKSSIQQFLVQQMATSLTNDPNFTTALATAISGRILDHTSNKAKW*