AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100080 MtrunA17_Chr1g0150281 95.439 285 12 1 1 284 1 285 0.0 548
Msa0100080 MtrunA17_Chr3g0136961 58.784 296 91 9 1 275 1 286 7.00e-104 304
Msa0100080 MtrunA17_Chr2g0333851 47.529 263 120 6 24 275 58 313 3.64e-66 209
Msa0100080 MtrunA17_Chr4g0001361 42.182 275 124 8 25 275 51 314 1.50e-52 174
Msa0100080 MtrunA17_Chr1g0150271 42.500 200 88 6 90 276 53 238 3.39e-41 142
Msa0100080 MtrunA17_Chr7g0270831 28.448 348 153 9 6 274 71 401 2.12e-30 118
Msa0100080 MtrunA17_Chr2g0288871 33.333 213 98 4 28 196 150 362 1.84e-27 111
Msa0100080 MtrunA17_Chr3g0099641 33.010 206 80 5 124 271 236 441 8.50e-26 105
Msa0100080 MtrunA17_Chr4g0075201 30.332 211 98 5 25 196 124 324 2.31e-24 102
Msa0100080 MtrunA17_Chr4g0060271 57.333 75 32 0 122 196 238 312 4.38e-24 101
Msa0100080 MtrunA17_Chr4g0051181 52.564 78 37 0 119 196 223 300 5.44e-24 100
Msa0100080 MtrunA17_Chr7g0216891 46.739 92 49 0 122 213 202 293 1.35e-23 100
Msa0100080 MtrunA17_Chr2g0302391 40.323 124 63 3 91 205 156 277 3.45e-23 98.2
Msa0100080 MtrunA17_Chr2g0322391 48.889 90 46 0 124 213 334 423 4.77e-23 98.6
Msa0100080 MtrunA17_Chr4g0025051 43.000 100 57 0 116 215 312 411 2.44e-21 93.6
Msa0100080 MtrunA17_Chr4g0025061 45.652 92 50 0 124 215 345 436 1.25e-20 91.7
Msa0100080 MtrunA17_Chr3g0101131 34.483 145 82 5 62 196 330 471 2.40e-20 90.9
Msa0100080 MtrunA17_Chr1g0194481 41.667 96 51 2 123 218 146 236 3.60e-20 88.6
Msa0100080 MtrunA17_Chr5g0445311 57.895 57 23 1 140 196 365 420 1.79e-19 88.2
Msa0100080 MtrunA17_Chr5g0447701 52.703 74 32 2 124 197 239 309 2.51e-19 87.0
Msa0100080 MtrunA17_Chr5g0443131 47.297 74 34 2 123 196 145 213 3.58e-19 85.5
Msa0100080 MtrunA17_Chr4g0051881 57.895 57 23 1 140 196 179 234 4.22e-19 85.9
Msa0100080 MtrunA17_Chr7g0270191 48.052 77 37 2 120 196 128 201 4.78e-19 85.1
Msa0100080 MtrunA17_Chr5g0401821 52.632 57 27 0 140 196 200 256 6.86e-19 84.3
Msa0100080 MtrunA17_Chr1g0147881 36.538 104 55 1 93 196 227 319 1.06e-18 84.7
Msa0100080 MtrunA17_Chr5g0418781 47.297 74 34 2 123 196 112 180 1.56e-18 83.2
Msa0100080 MtrunA17_Chr4g0053281 49.231 65 33 0 140 204 267 331 1.62e-18 84.0
Msa0100080 MtrunA17_Chr1g0184691 47.945 73 36 1 127 197 279 351 2.26e-18 84.0
Msa0100080 MtrunA17_Chr5g0432161 47.945 73 35 2 124 196 408 477 2.95e-18 84.7
Msa0100080 MtrunA17_Chr5g0432161 50.877 57 26 2 140 196 245 299 1.20e-13 70.9
Msa0100080 MtrunA17_Chr7g0263531 50.746 67 32 1 130 196 352 417 3.00e-18 84.3
Msa0100080 MtrunA17_Chr7g0263531 53.125 64 28 2 140 203 190 251 3.55e-16 78.2
Msa0100080 MtrunA17_Chr2g0294231 47.297 74 34 2 123 196 191 259 3.22e-18 83.6
Msa0100080 MtrunA17_Chr5g0418191 47.945 73 35 2 124 196 307 376 4.07e-18 83.6
Msa0100080 MtrunA17_Chr5g0418191 52.632 57 25 2 140 196 152 206 1.26e-13 70.5
Msa0100080 MtrunA17_Chr4g0042831 46.341 82 38 3 115 196 259 334 6.79e-18 82.8
Msa0100080 MtrunA17_Chr4g0042831 47.368 57 29 1 140 196 146 201 5.94e-11 62.4
Msa0100080 MtrunA17_Chr7g0228941 52.632 57 27 0 140 196 53 109 8.10e-18 77.8
Msa0100080 MtrunA17_Chr7g0218081 47.945 73 35 2 124 196 397 466 1.74e-17 82.0
Msa0100080 MtrunA17_Chr7g0218081 49.123 57 27 2 140 196 229 283 1.91e-11 64.3
Msa0100080 MtrunA17_Chr1g0188941 50.877 57 27 1 140 196 52 107 2.38e-17 76.3
Msa0100080 MtrunA17_Chr3g0106491 46.575 73 36 2 124 196 352 421 3.64e-17 81.3
Msa0100080 MtrunA17_Chr3g0106491 50.877 57 26 2 140 196 199 253 3.29e-13 69.3
Msa0100080 MtrunA17_Chr7g0238921 56.140 57 24 1 140 196 125 180 6.04e-17 79.3
Msa0100080 MtrunA17_Chr8g0379461 51.724 58 28 0 140 197 77 134 7.39e-17 78.2
Msa0100080 MtrunA17_Chr1g0150801 50.877 57 27 1 140 196 103 158 1.17e-16 75.5
Msa0100080 MtrunA17_Chr4g0004911 41.304 92 48 3 105 196 307 392 1.45e-16 79.3
Msa0100080 MtrunA17_Chr4g0004911 41.026 78 45 1 140 217 185 261 2.97e-13 69.7
Msa0100080 MtrunA17_Chr3g0139021 52.632 57 27 0 140 196 315 371 2.01e-16 78.6
Msa0100080 MtrunA17_Chr7g0249311 32.919 161 90 7 113 262 365 518 2.33e-16 79.0
Msa0100080 MtrunA17_Chr7g0249301 44.737 76 39 2 121 196 276 348 2.43e-16 78.2
Msa0100080 MtrunA17_Chr8g0383351 52.632 57 26 1 140 196 161 216 2.97e-16 76.3
Msa0100080 MtrunA17_Chr7g0224801 51.613 62 29 1 140 201 94 154 2.98e-16 74.7
Msa0100080 MtrunA17_Chr3g0129361 52.632 57 26 1 140 196 145 200 3.09e-16 75.9
Msa0100080 MtrunA17_Chr2g0284321 49.123 57 29 0 140 196 36 92 3.16e-16 75.9
Msa0100080 MtrunA17_Chr4g0071521 50.000 58 29 0 140 197 246 303 3.20e-16 77.4
Msa0100080 MtrunA17_Chr3g0079691 34.921 126 70 4 124 240 482 604 4.51e-16 78.2
Msa0100080 MtrunA17_Chr3g0079691 50.877 57 26 2 140 196 281 335 5.64e-12 65.9
Msa0100080 MtrunA17_Chr2g0289181 35.246 122 72 3 140 254 15 136 4.59e-16 75.5
Msa0100080 MtrunA17_Chr7g0243891 45.205 73 37 2 124 196 361 430 5.91e-16 77.8
Msa0100080 MtrunA17_Chr7g0243891 47.368 57 28 2 140 196 217 271 6.57e-11 62.4
Msa0100080 MtrunA17_Chr4g0068541 45.205 73 37 2 124 196 195 264 7.14e-16 77.0
Msa0100080 MtrunA17_Chr8g0335811 52.632 57 26 1 140 196 155 210 1.42e-15 74.3
Msa0100080 MtrunA17_Chr2g0319961 52.632 57 27 0 140 196 81 137 2.57e-15 73.9
Msa0100080 MtrunA17_Chr8g0386241 43.939 66 36 1 140 205 104 168 3.99e-15 72.0
Msa0100080 MtrunA17_Chr4g0074001 50.877 57 27 1 140 196 360 415 5.45e-15 74.7
Msa0100080 MtrunA17_Chr4g0024391 36.957 92 58 0 124 215 214 305 5.65e-15 74.7
Msa0100080 MtrunA17_Chr2g0293481 42.857 77 39 1 125 196 248 324 1.32e-14 73.6
Msa0100080 MtrunA17_Chr8g0387501 43.478 69 39 0 140 208 130 198 1.66e-14 72.0
Msa0100080 MtrunA17_Chr3g0129321 49.123 57 28 1 140 196 119 174 3.44e-14 69.7
Msa0100080 MtrunA17_Chr8g0348311 38.554 83 50 1 140 222 156 237 3.52e-14 71.6
Msa0100080 MtrunA17_Chr7g0248721 48.485 66 32 2 140 205 142 205 4.47e-14 69.7
Msa0100080 MtrunA17_Chr7g0270051 47.368 57 30 0 140 196 54 110 7.20e-14 70.1
Msa0100080 MtrunA17_Chr7g0248691 47.368 57 30 0 140 196 155 211 1.22e-13 70.1
Msa0100080 MtrunA17_Chr8g0383251 45.614 57 30 1 140 196 109 164 1.25e-13 67.8
Msa0100080 MtrunA17_Chr6g0485431 38.636 88 48 4 111 197 130 212 2.57e-13 69.3
Msa0100080 MtrunA17_Chr1g0202461 36.842 76 48 0 140 215 262 337 2.57e-13 69.3
Msa0100080 MtrunA17_Chr1g0189391 40.244 82 45 3 124 204 84 162 4.50e-13 68.6
Msa0100080 MtrunA17_Chr8g0387981 50.877 57 26 1 140 194 133 189 3.64e-12 65.9
Msa0100080 MtrunA17_Chr3g0126391 50.877 57 26 1 140 194 134 190 6.41e-12 65.1
Msa0100080 MtrunA17_Chr5g0447711 46.479 71 36 2 126 196 218 286 7.20e-12 64.7
Msa0100080 MtrunA17_Chr7g0275531 41.975 81 43 2 124 202 105 183 1.97e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100080 AT1G80840.1 42.809 299 134 9 3 274 6 294 7.71e-69 216
Msa0100080 AT2G25000.1 42.222 270 110 7 19 278 36 269 1.42e-61 196
Msa0100080 AT2G25000.2 42.366 262 108 6 24 278 1 226 2.42e-61 194
Msa0100080 AT2G25000.4 42.366 262 108 6 24 278 1 226 2.42e-61 194
Msa0100080 AT4G31800.1 43.911 271 124 7 25 278 49 308 3.86e-61 196
Msa0100080 AT2G25000.3 42.264 265 110 6 21 278 20 248 7.99e-61 193
Msa0100080 AT4G31800.2 54.706 170 67 4 111 278 82 243 5.96e-54 176
Msa0100080 AT4G31800.3 44.048 168 75 4 25 176 49 213 3.08e-33 122
Msa0100080 AT4G01720.1 33.503 197 98 4 28 196 105 296 2.93e-24 102
Msa0100080 AT4G04450.2 48.913 92 47 0 124 215 183 274 5.57e-24 100
Msa0100080 AT4G04450.1 48.913 92 47 0 124 215 277 368 1.38e-23 100
Msa0100080 AT1G62300.1 30.952 210 107 5 25 196 160 369 1.86e-23 100
Msa0100080 AT1G68150.1 49.425 87 44 0 124 210 220 306 4.20e-23 97.8
Msa0100080 AT4G22070.4 54.795 73 33 0 124 196 282 354 4.27e-23 99.0
Msa0100080 AT4G22070.3 54.795 73 33 0 124 196 282 354 4.27e-23 99.0
Msa0100080 AT4G22070.2 54.795 73 33 0 124 196 282 354 4.27e-23 99.0
Msa0100080 AT4G22070.1 54.795 73 33 0 124 196 282 354 4.27e-23 99.0
Msa0100080 AT5G15130.2 52.703 74 35 0 140 213 186 259 3.50e-22 96.3
Msa0100080 AT5G15130.1 52.703 74 35 0 140 213 228 301 4.45e-22 96.3
Msa0100080 AT1G18860.1 64.912 57 20 0 140 196 240 296 1.42e-21 94.7
Msa0100080 AT1G64000.1 53.030 66 30 1 140 205 115 179 2.55e-19 84.0
Msa0100080 AT1G29860.1 53.333 60 27 1 137 196 134 192 6.94e-19 84.7
Msa0100080 AT4G18170.1 53.333 60 27 1 137 196 170 228 7.04e-19 85.1
Msa0100080 AT2G04880.2 57.627 59 24 1 138 196 282 339 1.10e-18 85.9
Msa0100080 AT5G41570.1 53.030 66 30 1 140 205 99 163 1.15e-18 82.0
Msa0100080 AT2G04880.1 57.627 59 24 1 138 196 306 363 1.22e-18 85.9
Msa0100080 AT2G47260.1 55.000 60 26 1 137 196 172 230 1.65e-18 84.3
Msa0100080 AT4G26640.5 49.315 73 34 2 124 196 192 261 1.85e-18 84.7
Msa0100080 AT4G26640.6 49.315 73 34 2 124 196 192 261 1.85e-18 84.7
Msa0100080 AT4G26640.4 49.315 73 34 2 124 196 192 261 1.85e-18 84.7
Msa0100080 AT4G26640.3 49.315 73 34 2 124 196 192 261 1.85e-18 84.7
Msa0100080 AT5G26170.1 50.877 57 27 1 140 196 114 169 1.89e-18 81.3
Msa0100080 AT5G07100.2 38.614 101 58 3 96 196 101 197 2.22e-18 82.0
Msa0100080 AT5G07100.2 45.070 71 38 1 126 196 11 80 2.28e-13 68.2
Msa0100080 AT5G07100.4 38.614 101 58 3 96 196 101 197 2.22e-18 82.0
Msa0100080 AT5G07100.4 45.070 71 38 1 126 196 11 80 2.28e-13 68.2
Msa0100080 AT5G07100.5 38.614 101 58 3 96 196 101 197 2.22e-18 82.0
Msa0100080 AT5G07100.5 45.070 71 38 1 126 196 11 80 2.28e-13 68.2
Msa0100080 AT5G07100.3 38.614 101 58 3 96 196 101 197 2.22e-18 82.0
Msa0100080 AT5G07100.3 45.070 71 38 1 126 196 11 80 2.28e-13 68.2
Msa0100080 AT1G13960.2 47.945 73 35 2 124 196 243 312 2.70e-18 84.0
Msa0100080 AT1G13960.2 50.877 57 26 2 140 196 77 131 1.71e-12 67.4
Msa0100080 AT4G26640.1 49.315 73 34 2 124 196 296 365 3.41e-18 84.7
Msa0100080 AT4G26640.7 49.315 73 34 2 124 196 328 397 3.44e-18 84.7
Msa0100080 AT4G26640.2 49.315 73 34 2 124 196 368 437 3.44e-18 84.7
Msa0100080 AT1G13960.1 47.945 73 35 2 124 196 396 465 4.62e-18 84.3
Msa0100080 AT1G13960.1 50.877 57 26 2 140 196 230 284 1.95e-12 67.4
Msa0100080 AT2G03340.1 47.945 73 35 2 124 196 402 471 4.65e-18 84.3
Msa0100080 AT2G03340.1 50.877 57 26 2 140 196 251 305 3.01e-13 70.1
Msa0100080 AT5G46350.1 47.222 72 33 2 125 196 173 239 5.63e-18 82.8
Msa0100080 AT5G07100.1 38.614 101 58 3 96 196 194 290 7.91e-18 82.0
Msa0100080 AT5G07100.1 42.308 78 44 1 126 203 104 180 6.39e-13 68.2
Msa0100080 AT4G31550.2 44.928 69 38 0 140 208 246 314 1.09e-17 82.0
Msa0100080 AT4G31550.1 44.928 69 38 0 140 208 247 315 1.09e-17 82.0
Msa0100080 AT5G49520.1 54.386 57 25 1 140 196 222 277 1.29e-17 82.4
Msa0100080 AT1G69310.4 54.386 57 25 1 140 196 148 203 2.18e-17 80.5
Msa0100080 AT1G69310.2 54.386 57 25 1 140 196 148 203 2.18e-17 80.5
Msa0100080 AT1G69310.1 54.386 57 25 1 140 196 148 203 2.18e-17 80.5
Msa0100080 AT2G30590.1 52.632 57 27 0 140 196 314 370 2.18e-17 81.6
Msa0100080 AT5G28650.1 44.186 86 40 2 127 210 248 327 2.52e-17 80.9
Msa0100080 AT1G69810.2 50.000 74 36 1 124 196 130 203 2.63e-17 80.9
Msa0100080 AT2G23320.1 49.123 57 29 0 140 196 241 297 2.81e-17 80.9
Msa0100080 AT5G56270.1 47.945 73 35 2 124 196 474 543 3.17e-17 82.0
Msa0100080 AT5G56270.1 50.877 57 26 2 140 196 274 328 3.41e-11 63.9
Msa0100080 AT1G69810.1 50.000 74 36 1 124 196 188 261 3.28e-17 81.3
Msa0100080 AT3G62340.1 51.562 64 30 1 133 196 112 174 3.61e-17 79.7
Msa0100080 AT5G13080.1 53.226 62 28 1 140 201 68 128 4.58e-17 76.6
Msa0100080 AT3G01080.1 46.575 73 36 2 124 196 293 362 6.22e-17 80.5
Msa0100080 AT3G01080.1 49.123 57 27 2 140 196 168 222 8.29e-11 62.4
Msa0100080 AT3G01080.2 46.575 73 36 2 124 196 331 400 6.51e-17 80.9
Msa0100080 AT3G01080.2 49.123 57 27 2 140 196 206 260 7.67e-11 62.8
Msa0100080 AT1G29280.1 50.877 57 28 0 140 196 75 131 1.14e-16 78.2
Msa0100080 AT3G04670.1 41.860 86 42 2 127 210 248 327 1.36e-16 79.0
Msa0100080 AT2G24570.1 50.877 57 28 0 140 196 244 300 1.44e-16 79.0
Msa0100080 AT2G38470.1 45.205 73 37 2 124 196 349 418 2.14e-16 79.3
Msa0100080 AT2G38470.1 50.877 57 26 2 140 196 185 239 4.08e-13 69.7
Msa0100080 AT4G24240.1 46.552 58 31 0 140 197 282 339 4.34e-16 77.8
Msa0100080 AT4G30935.1 52.632 57 26 1 140 196 332 387 8.18e-16 77.4
Msa0100080 AT2G44745.1 52.632 57 26 1 140 196 146 201 8.66e-16 75.1
Msa0100080 AT2G30250.1 45.205 73 37 2 124 196 315 384 1.49e-15 76.6
Msa0100080 AT2G30250.1 49.123 57 27 2 140 196 167 221 5.14e-11 63.2
Msa0100080 AT3G01970.1 49.180 61 30 1 140 200 66 125 3.07e-15 71.6
Msa0100080 AT1G55600.1 52.632 57 26 1 140 196 308 363 4.19e-15 75.5
Msa0100080 AT2G37260.2 45.588 68 36 1 129 196 257 323 4.21e-15 74.7
Msa0100080 AT2G37260.2 46.479 71 36 2 126 196 70 138 5.30e-15 74.7
Msa0100080 AT2G37260.3 45.588 68 36 1 129 196 259 325 4.23e-15 74.7
Msa0100080 AT2G37260.3 46.479 71 36 2 126 196 72 140 5.32e-15 74.7
Msa0100080 AT2G37260.1 45.588 68 36 1 129 196 339 405 4.52e-15 75.1
Msa0100080 AT2G37260.1 46.479 71 36 2 126 196 152 220 6.11e-15 74.7
Msa0100080 AT4G39410.1 50.877 57 27 1 140 196 224 279 5.05e-15 74.3
Msa0100080 AT2G21900.1 44.444 72 38 2 126 196 95 165 7.55e-15 72.0
Msa0100080 AT2G34830.1 47.692 65 34 0 132 196 208 272 8.51e-15 74.3
Msa0100080 AT2G34830.2 47.692 65 34 0 132 196 217 281 8.88e-15 74.3
Msa0100080 AT1G30650.1 47.692 65 34 0 132 196 210 274 1.83e-14 73.6
Msa0100080 AT3G58710.2 49.123 57 29 0 140 196 71 127 3.33e-14 71.6
Msa0100080 AT3G58710.1 49.123 57 29 0 140 196 72 128 3.40e-14 71.2
Msa0100080 AT5G64810.1 37.805 82 46 3 116 196 89 166 3.92e-14 69.7
Msa0100080 AT2G46130.1 50.877 57 27 1 140 196 31 86 6.40e-14 67.0
Msa0100080 AT5G52830.1 43.478 69 39 0 140 208 166 234 7.90e-14 71.2
Msa0100080 AT4G01250.1 45.614 57 31 0 140 196 129 185 1.25e-13 70.1
Msa0100080 AT5G43290.1 40.789 76 43 2 121 196 97 170 1.40e-13 69.7
Msa0100080 AT4G26440.1 43.836 73 38 2 124 196 359 428 1.41e-13 70.9
Msa0100080 AT4G26440.1 47.368 57 28 2 140 196 179 233 6.96e-11 62.8
Msa0100080 AT4G23550.1 30.714 140 88 3 138 275 139 271 1.95e-13 69.7
Msa0100080 AT5G45050.2 34.951 103 64 1 94 196 1110 1209 2.28e-13 70.9
Msa0100080 AT5G45050.1 34.951 103 64 1 94 196 1138 1237 2.42e-13 70.9
Msa0100080 AT5G45050.4 34.951 103 64 1 94 196 999 1098 2.54e-13 70.5
Msa0100080 AT1G69310.3 50.877 57 23 2 140 196 148 199 6.01e-13 68.2
Msa0100080 AT2G46400.1 40.698 86 46 3 111 194 79 161 2.57e-12 66.2
Msa0100080 AT3G01080.3 49.123 57 27 2 140 196 206 260 7.49e-11 62.4

Find 53 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTTCTGGAAGAATTT+TGG 0.107436 1_3:+6556406 Msa0100080:CDS
GCACTTGCCACTGCTATTTC+TGG 0.167473 1_3:+6556395 Msa0100080:CDS
AATTGCTGAATAGATGATTT+TGG 0.197574 1_3:-6556320 None:intergenic
TTTGGACCATACTTCTAATA+AGG 0.232805 1_3:+6556424 Msa0100080:CDS
GTCTTCACCTAAGGCTTATA+AGG 0.247602 1_3:+6555291 Msa0100080:CDS
GCAAGTGCTGTAGTGAAATT+AGG 0.319456 1_3:-6556380 None:intergenic
CAGAGTGAAGAAGCTCCTTT+AGG 0.328370 1_3:+6556227 Msa0100080:CDS
GGATATCAATGGAGGAAATA+TGG 0.328462 1_3:+6555494 Msa0100080:CDS
ATTTGGCCTTATTAGAAGTA+TGG 0.343403 1_3:-6556430 None:intergenic
AATATGTTTGGTAATGTTAG+AGG 0.347609 1_3:+6555190 Msa0100080:CDS
TACATGGAAATTTCACCATT+TGG 0.351460 1_3:-6556447 None:intergenic
TTGTGAACAGGACGAAGTTT+TGG 0.359854 1_3:+6554994 Msa0100080:intron
GTTACCTAAAATATAGTTAA+GGG 0.368712 1_3:-6556590 None:intergenic
TGGAGCATTATCAAGCTTCA+TGG 0.370865 1_3:-6556300 None:intergenic
CCTCTCCTAGAGCTTACTTT+AGG 0.371319 1_3:+6555540 Msa0100080:CDS
TTGTATACGAACCTTGAGTA+TGG 0.372911 1_3:-6554339 None:intergenic
GAAAGTTGCATCAATATGTT+TGG 0.406359 1_3:+6555178 Msa0100080:CDS
TGTTACCTAAAATATAGTTA+AGG 0.406864 1_3:-6556591 None:intergenic
TATGTTGCAACTAGTATAGT+AGG 0.431061 1_3:-6556149 None:intergenic
TGGAAGGAACATTAACGTTA+AGG 0.438901 1_3:-6554319 None:intergenic
ATGAAGAATCATTAATCAAA+AGG 0.454669 1_3:+6555254 Msa0100080:CDS
ACAAGAACCTTATAAGCCTT+AGG 0.486641 1_3:-6555298 None:intergenic
CATTAATCAAAAGGCCATGT+AGG 0.493040 1_3:+6555263 Msa0100080:CDS
GCATTATCAAGCTTCATGGT+TGG 0.504440 1_3:-6556296 None:intergenic
AACTGGGCAGCTTGGAGCAT+AGG 0.506437 1_3:-6555567 None:intergenic
CTTTCAGCAGCAAATTGCAA+TGG 0.512836 1_3:+6554268 None:intergenic
ATACTTCTAATAAGGCCAAA+TGG 0.514058 1_3:+6556432 Msa0100080:CDS
TTTCTGCTTTCTCATGACCA+TGG 0.521784 1_3:-6556187 None:intergenic
TAGGGATATGTCTTCACCTA+AGG 0.525286 1_3:+6555282 Msa0100080:CDS
TAATGTTCCTTCCATACTCA+AGG 0.525940 1_3:+6554328 Msa0100080:CDS
GAGCACCTAAAGTAAGCTCT+AGG 0.538868 1_3:-6555545 None:intergenic
ATTAATCAAAAGGCCATGTA+GGG 0.538909 1_3:+6555264 Msa0100080:CDS
CCTAAAGTAAGCTCTAGGAG+AGG 0.548395 1_3:-6555540 None:intergenic
CTAAAGGAGCTTCTTCACTC+TGG 0.548870 1_3:-6556226 None:intergenic
GTAACATGAACTGAACCTAA+AGG 0.560432 1_3:-6556242 None:intergenic
GTCTTAGTTCTGAGAACAAG+AGG 0.567530 1_3:+6555032 Msa0100080:CDS
CTAAAGTAAGCTCTAGGAGA+GGG 0.569732 1_3:-6555539 None:intergenic
TTGTGGTATAAAGTATGTGA+TGG 0.581181 1_3:+6555469 Msa0100080:intron
ATGGAGGAAATATGGTCAGA+AGG 0.585738 1_3:+6555502 Msa0100080:CDS
GGTATAAAGTATGTGATGGA+TGG 0.592987 1_3:+6555473 Msa0100080:intron
ATGTGATGGATGGATATCAA+TGG 0.593080 1_3:+6555483 Msa0100080:CDS
ATGTTGCAACTAGTATAGTA+GGG 0.601976 1_3:-6556148 None:intergenic
TTCATGCACAACATTATACA+TGG 0.613548 1_3:-6556463 None:intergenic
TGCAATGGAATCAACTTGTG+TGG 0.619908 1_3:+6554283 Msa0100080:exon
ATACGAACCTTGAGTATGGA+AGG 0.630843 1_3:-6554335 None:intergenic
GGTGAAGACATATCCCTACA+TGG 0.630918 1_3:-6555277 None:intergenic
GTTCTTTGAATAATTTGTTG+AGG 0.631715 1_3:-6556269 None:intergenic
TAACATGTGTGAGAACTATG+AGG 0.644714 1_3:+6555072 Msa0100080:CDS
TAAAGTAAGCTCTAGGAGAG+GGG 0.664718 1_3:-6555538 None:intergenic
TGATGGATGGATATCAATGG+AGG 0.669535 1_3:+6555486 Msa0100080:CDS
ATACTAGTTGCAACATACGA+AGG 0.673327 1_3:+6556155 Msa0100080:CDS
AATTCTTCCAGAAATAGCAG+TGG 0.680346 1_3:-6556402 None:intergenic
TACGAAGGAGAGCACAACCA+TGG 0.683428 1_3:+6556170 Msa0100080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTAATTCATAATCA+AGG + chr1_3:6554530-6554549 Msa0100080:intron 10.0%
!! TATACTAATTTCATTAAAAT+TGG + chr1_3:6554897-6554916 Msa0100080:intron 10.0%
!! AATTGAAAATTAATTAATCA+AGG - chr1_3:6555444-6555463 None:intergenic 10.0%
!!! TAATTTTCAATTTTTATTTG+TGG + chr1_3:6555452-6555471 Msa0100080:intron 10.0%
!! AAAATATTAATTCATAATCA+AGG + chr1_3:6554530-6554549 Msa0100080:intron 10.0%
!! TATACTAATTTCATTAAAAT+TGG + chr1_3:6554897-6554916 Msa0100080:intron 10.0%
!! AATTGAAAATTAATTAATCA+AGG - chr1_3:6555444-6555463 None:intergenic 10.0%
!!! TAATTTTCAATTTTTATTTG+TGG + chr1_3:6555452-6555471 Msa0100080:intron 10.0%
!! TATATTTATACTAATGATGT+AGG + chr1_3:6554740-6554759 Msa0100080:intron 15.0%
!! CAGATGTATATAAAAAATTA+AGG + chr1_3:6556549-6556568 Msa0100080:three_prime_UTR 15.0%
!! TATATTTATACTAATGATGT+AGG + chr1_3:6554740-6554759 Msa0100080:intron 15.0%
!! CAGATGTATATAAAAAATTA+AGG + chr1_3:6556549-6556568 Msa0100080:three_prime_UTR 15.0%
!!! TTTAATTTTCATGTATGATC+AGG + chr1_3:6554386-6554405 Msa0100080:intron 20.0%
!!! TTAATTTTCATGTATGATCA+GGG + chr1_3:6554387-6554406 Msa0100080:intron 20.0%
!! AAAAATTACACTAGTTAACA+AGG + chr1_3:6554415-6554434 Msa0100080:intron 20.0%
!! ATGAAGAATCATTAATCAAA+AGG + chr1_3:6555254-6555273 Msa0100080:CDS 20.0%
!!! TTATTACCTTCTTTTTAACT+GGG - chr1_3:6555586-6555605 None:intergenic 20.0%
!!! ATTATTACCTTCTTTTTAAC+TGG - chr1_3:6555587-6555606 None:intergenic 20.0%
!! AAAAATTTGACAAGAACTTT+CGG + chr1_3:6555716-6555735 Msa0100080:intron 20.0%
!! ATTCTTTCTCATCAATATAT+TGG - chr1_3:6555830-6555849 None:intergenic 20.0%
!!! TATTGATGAGAAAGAATTTT+AGG + chr1_3:6555833-6555852 Msa0100080:intron 20.0%
!!! ATTGATGAGAAAGAATTTTA+GGG + chr1_3:6555834-6555853 Msa0100080:intron 20.0%
!!! ATCAAAATTTGATCTTGTTT+GGG - chr1_3:6556086-6556105 None:intergenic 20.0%
!!! TAATCCCTTAACTATATTTT+AGG + chr1_3:6556586-6556605 Msa0100080:three_prime_UTR 20.0%
!! GTTACCTAAAATATAGTTAA+GGG - chr1_3:6556593-6556612 None:intergenic 20.0%
!! TGTTACCTAAAATATAGTTA+AGG - chr1_3:6556594-6556613 None:intergenic 20.0%
!!! TTTAATTTTCATGTATGATC+AGG + chr1_3:6554386-6554405 Msa0100080:intron 20.0%
!!! TTAATTTTCATGTATGATCA+GGG + chr1_3:6554387-6554406 Msa0100080:intron 20.0%
!! AAAAATTACACTAGTTAACA+AGG + chr1_3:6554415-6554434 Msa0100080:intron 20.0%
!! ATGAAGAATCATTAATCAAA+AGG + chr1_3:6555254-6555273 Msa0100080:CDS 20.0%
!!! TTATTACCTTCTTTTTAACT+GGG - chr1_3:6555586-6555605 None:intergenic 20.0%
!!! ATTATTACCTTCTTTTTAAC+TGG - chr1_3:6555587-6555606 None:intergenic 20.0%
!! AAAAATTTGACAAGAACTTT+CGG + chr1_3:6555716-6555735 Msa0100080:intron 20.0%
!! ATTCTTTCTCATCAATATAT+TGG - chr1_3:6555830-6555849 None:intergenic 20.0%
!!! TATTGATGAGAAAGAATTTT+AGG + chr1_3:6555833-6555852 Msa0100080:intron 20.0%
!!! ATTGATGAGAAAGAATTTTA+GGG + chr1_3:6555834-6555853 Msa0100080:intron 20.0%
!!! ATCAAAATTTGATCTTGTTT+GGG - chr1_3:6556086-6556105 None:intergenic 20.0%
!!! TAATCCCTTAACTATATTTT+AGG + chr1_3:6556586-6556605 Msa0100080:three_prime_UTR 20.0%
!! GTTACCTAAAATATAGTTAA+GGG - chr1_3:6556593-6556612 None:intergenic 20.0%
!! TGTTACCTAAAATATAGTTA+AGG - chr1_3:6556594-6556613 None:intergenic 20.0%
! AAACTTTATAGATTCGTTCA+AGG - chr1_3:6554462-6554481 None:intergenic 25.0%
! TCAATCAATCTTAACTACTA+TGG - chr1_3:6554708-6554727 None:intergenic 25.0%
! CACTATATATACACCTAAAA+AGG + chr1_3:6554800-6554819 Msa0100080:intron 25.0%
!! TTTTCTTTGATTGTTGTGTT+TGG - chr1_3:6555144-6555163 None:intergenic 25.0%
!!! AATATGTTTGGTAATGTTAG+AGG + chr1_3:6555190-6555209 Msa0100080:CDS 25.0%
! ATGTTAAGAATACACATGTT+TGG - chr1_3:6555646-6555665 None:intergenic 25.0%
! TTTCGATAGAGATTACTAAT+AGG - chr1_3:6555699-6555718 None:intergenic 25.0%
!! TATATGAAAACATGCGATTT+TGG - chr1_3:6555755-6555774 None:intergenic 25.0%
!! GTAAACAAATGCTAAGATTT+TGG + chr1_3:6556036-6556055 Msa0100080:intron 25.0%
! GATCAAAATTTGATCTTGTT+TGG - chr1_3:6556087-6556106 None:intergenic 25.0%
!! CTCTTGTGTCATTATTAATT+AGG + chr1_3:6556106-6556125 Msa0100080:intron 25.0%
!!! GTTCTTTGAATAATTTGTTG+AGG - chr1_3:6556272-6556291 None:intergenic 25.0%
!! AATTGCTGAATAGATGATTT+TGG - chr1_3:6556323-6556342 None:intergenic 25.0%
!! ATCATCTATTCAGCAATTTT+TGG + chr1_3:6556325-6556344 Msa0100080:CDS 25.0%
! AAACTTTATAGATTCGTTCA+AGG - chr1_3:6554462-6554481 None:intergenic 25.0%
! TCAATCAATCTTAACTACTA+TGG - chr1_3:6554708-6554727 None:intergenic 25.0%
! CACTATATATACACCTAAAA+AGG + chr1_3:6554800-6554819 Msa0100080:intron 25.0%
!! TTTTCTTTGATTGTTGTGTT+TGG - chr1_3:6555144-6555163 None:intergenic 25.0%
!!! AATATGTTTGGTAATGTTAG+AGG + chr1_3:6555190-6555209 Msa0100080:CDS 25.0%
! ATGTTAAGAATACACATGTT+TGG - chr1_3:6555646-6555665 None:intergenic 25.0%
! TTTCGATAGAGATTACTAAT+AGG - chr1_3:6555699-6555718 None:intergenic 25.0%
!! TATATGAAAACATGCGATTT+TGG - chr1_3:6555755-6555774 None:intergenic 25.0%
!! GTAAACAAATGCTAAGATTT+TGG + chr1_3:6556036-6556055 Msa0100080:intron 25.0%
! GATCAAAATTTGATCTTGTT+TGG - chr1_3:6556087-6556106 None:intergenic 25.0%
!! CTCTTGTGTCATTATTAATT+AGG + chr1_3:6556106-6556125 Msa0100080:intron 25.0%
!!! GTTCTTTGAATAATTTGTTG+AGG - chr1_3:6556272-6556291 None:intergenic 25.0%
!! AATTGCTGAATAGATGATTT+TGG - chr1_3:6556323-6556342 None:intergenic 25.0%
!! ATCATCTATTCAGCAATTTT+TGG + chr1_3:6556325-6556344 Msa0100080:CDS 25.0%
ATTACACTAGTTAACAAGGT+TGG + chr1_3:6554419-6554438 Msa0100080:intron 30.0%
!!! CTTAGGGCACAAATTTTTTT+GGG - chr1_3:6554653-6554672 None:intergenic 30.0%
!!! ACTTAGGGCACAAATTTTTT+TGG - chr1_3:6554654-6554673 None:intergenic 30.0%
TCAATCTTAACTACTATGGA+TGG - chr1_3:6554704-6554723 None:intergenic 30.0%
! ATCGCTAATTCAACCTTTTT+AGG - chr1_3:6554816-6554835 None:intergenic 30.0%
! CAATGTCACTTAGAAATTCA+GGG - chr1_3:6554968-6554987 None:intergenic 30.0%
! ACATTGGAAATTTTGTGAAC+AGG + chr1_3:6554982-6555001 Msa0100080:intron 30.0%
GAAAGTTGCATCAATATGTT+TGG + chr1_3:6555178-6555197 Msa0100080:CDS 30.0%
ATTAATCAAAAGGCCATGTA+GGG + chr1_3:6555264-6555283 Msa0100080:CDS 30.0%
TTGTGGTATAAAGTATGTGA+TGG + chr1_3:6555469-6555488 Msa0100080:intron 30.0%
AGATTACTAATAGGTGAAGT+AGG - chr1_3:6555690-6555709 None:intergenic 30.0%
! CATCAATATATTGGTCTAAG+TGG - chr1_3:6555821-6555840 None:intergenic 30.0%
ATGTTGCAACTAGTATAGTA+GGG - chr1_3:6556151-6556170 None:intergenic 30.0%
TATGTTGCAACTAGTATAGT+AGG - chr1_3:6556152-6556171 None:intergenic 30.0%
!!! GCAATTTTTGGTTCAACAAA+TGG + chr1_3:6556337-6556356 Msa0100080:CDS 30.0%
!!! TGCTATTTCTGGAAGAATTT+TGG + chr1_3:6556406-6556425 Msa0100080:CDS 30.0%
TTTGGACCATACTTCTAATA+AGG + chr1_3:6556424-6556443 Msa0100080:CDS 30.0%
!! ATTTGGCCTTATTAGAAGTA+TGG - chr1_3:6556433-6556452 None:intergenic 30.0%
ATACTTCTAATAAGGCCAAA+TGG + chr1_3:6556432-6556451 Msa0100080:CDS 30.0%
TACATGGAAATTTCACCATT+TGG - chr1_3:6556450-6556469 None:intergenic 30.0%
TTCATGCACAACATTATACA+TGG - chr1_3:6556466-6556485 None:intergenic 30.0%
ATTACACTAGTTAACAAGGT+TGG + chr1_3:6554419-6554438 Msa0100080:intron 30.0%
!!! CTTAGGGCACAAATTTTTTT+GGG - chr1_3:6554653-6554672 None:intergenic 30.0%
!!! ACTTAGGGCACAAATTTTTT+TGG - chr1_3:6554654-6554673 None:intergenic 30.0%
TCAATCTTAACTACTATGGA+TGG - chr1_3:6554704-6554723 None:intergenic 30.0%
! ATCGCTAATTCAACCTTTTT+AGG - chr1_3:6554816-6554835 None:intergenic 30.0%
! CAATGTCACTTAGAAATTCA+GGG - chr1_3:6554968-6554987 None:intergenic 30.0%
! ACATTGGAAATTTTGTGAAC+AGG + chr1_3:6554982-6555001 Msa0100080:intron 30.0%
GAAAGTTGCATCAATATGTT+TGG + chr1_3:6555178-6555197 Msa0100080:CDS 30.0%
ATTAATCAAAAGGCCATGTA+GGG + chr1_3:6555264-6555283 Msa0100080:CDS 30.0%
TTGTGGTATAAAGTATGTGA+TGG + chr1_3:6555469-6555488 Msa0100080:intron 30.0%
AGATTACTAATAGGTGAAGT+AGG - chr1_3:6555690-6555709 None:intergenic 30.0%
! CATCAATATATTGGTCTAAG+TGG - chr1_3:6555821-6555840 None:intergenic 30.0%
ATGTTGCAACTAGTATAGTA+GGG - chr1_3:6556151-6556170 None:intergenic 30.0%
TATGTTGCAACTAGTATAGT+AGG - chr1_3:6556152-6556171 None:intergenic 30.0%
!!! GCAATTTTTGGTTCAACAAA+TGG + chr1_3:6556337-6556356 Msa0100080:CDS 30.0%
!!! TGCTATTTCTGGAAGAATTT+TGG + chr1_3:6556406-6556425 Msa0100080:CDS 30.0%
TTTGGACCATACTTCTAATA+AGG + chr1_3:6556424-6556443 Msa0100080:CDS 30.0%
!! ATTTGGCCTTATTAGAAGTA+TGG - chr1_3:6556433-6556452 None:intergenic 30.0%
ATACTTCTAATAAGGCCAAA+TGG + chr1_3:6556432-6556451 Msa0100080:CDS 30.0%
TACATGGAAATTTCACCATT+TGG - chr1_3:6556450-6556469 None:intergenic 30.0%
TTCATGCACAACATTATACA+TGG - chr1_3:6556466-6556485 None:intergenic 30.0%
TGGAAGGAACATTAACGTTA+AGG - chr1_3:6554322-6554341 None:intergenic 35.0%
TAATGTTCCTTCCATACTCA+AGG + chr1_3:6554328-6554347 Msa0100080:CDS 35.0%
TTGTATACGAACCTTGAGTA+TGG - chr1_3:6554342-6554361 None:intergenic 35.0%
! CCAATGTCACTTAGAAATTC+AGG - chr1_3:6554969-6554988 None:intergenic 35.0%
CCTGAATTTCTAAGTGACAT+TGG + chr1_3:6554966-6554985 Msa0100080:intron 35.0%
TAACATGTGTGAGAACTATG+AGG + chr1_3:6555072-6555091 Msa0100080:CDS 35.0%
CATTAATCAAAAGGCCATGT+AGG + chr1_3:6555263-6555282 Msa0100080:CDS 35.0%
ACAAGAACCTTATAAGCCTT+AGG - chr1_3:6555301-6555320 None:intergenic 35.0%
! GGTATAAAGTATGTGATGGA+TGG + chr1_3:6555473-6555492 Msa0100080:intron 35.0%
!! ATGTGATGGATGGATATCAA+TGG + chr1_3:6555483-6555502 Msa0100080:CDS 35.0%
GGATATCAATGGAGGAAATA+TGG + chr1_3:6555494-6555513 Msa0100080:CDS 35.0%
TTACTAATAGGTGAAGTAGG+CGG - chr1_3:6555687-6555706 None:intergenic 35.0%
AATTTGACAAGAACTTTCGG+TGG + chr1_3:6555719-6555738 Msa0100080:intron 35.0%
ATTTGACAAGAACTTTCGGT+GGG + chr1_3:6555720-6555739 Msa0100080:intron 35.0%
!! TGAAAACATGCGATTTTGGT+AGG - chr1_3:6555751-6555770 None:intergenic 35.0%
ATACTAGTTGCAACATACGA+AGG + chr1_3:6556155-6556174 Msa0100080:CDS 35.0%
GTAACATGAACTGAACCTAA+AGG - chr1_3:6556245-6556264 None:intergenic 35.0%
AATTCTTCCAGAAATAGCAG+TGG - chr1_3:6556405-6556424 None:intergenic 35.0%
TGGAAGGAACATTAACGTTA+AGG - chr1_3:6554322-6554341 None:intergenic 35.0%
TAATGTTCCTTCCATACTCA+AGG + chr1_3:6554328-6554347 Msa0100080:CDS 35.0%
TTGTATACGAACCTTGAGTA+TGG - chr1_3:6554342-6554361 None:intergenic 35.0%
! CCAATGTCACTTAGAAATTC+AGG - chr1_3:6554969-6554988 None:intergenic 35.0%
CCTGAATTTCTAAGTGACAT+TGG + chr1_3:6554966-6554985 Msa0100080:intron 35.0%
TAACATGTGTGAGAACTATG+AGG + chr1_3:6555072-6555091 Msa0100080:CDS 35.0%
CATTAATCAAAAGGCCATGT+AGG + chr1_3:6555263-6555282 Msa0100080:CDS 35.0%
ACAAGAACCTTATAAGCCTT+AGG - chr1_3:6555301-6555320 None:intergenic 35.0%
! GGTATAAAGTATGTGATGGA+TGG + chr1_3:6555473-6555492 Msa0100080:intron 35.0%
!! ATGTGATGGATGGATATCAA+TGG + chr1_3:6555483-6555502 Msa0100080:CDS 35.0%
GGATATCAATGGAGGAAATA+TGG + chr1_3:6555494-6555513 Msa0100080:CDS 35.0%
TTACTAATAGGTGAAGTAGG+CGG - chr1_3:6555687-6555706 None:intergenic 35.0%
AATTTGACAAGAACTTTCGG+TGG + chr1_3:6555719-6555738 Msa0100080:intron 35.0%
ATTTGACAAGAACTTTCGGT+GGG + chr1_3:6555720-6555739 Msa0100080:intron 35.0%
!! TGAAAACATGCGATTTTGGT+AGG - chr1_3:6555751-6555770 None:intergenic 35.0%
ATACTAGTTGCAACATACGA+AGG + chr1_3:6556155-6556174 Msa0100080:CDS 35.0%
GTAACATGAACTGAACCTAA+AGG - chr1_3:6556245-6556264 None:intergenic 35.0%
AATTCTTCCAGAAATAGCAG+TGG - chr1_3:6556405-6556424 None:intergenic 35.0%
TGCAATGGAATCAACTTGTG+TGG + chr1_3:6554283-6554302 Msa0100080:exon 40.0%
ATACGAACCTTGAGTATGGA+AGG - chr1_3:6554338-6554357 None:intergenic 40.0%
AACTACTATGGATGGCCTTT+AGG - chr1_3:6554696-6554715 None:intergenic 40.0%
! TTGTGAACAGGACGAAGTTT+TGG + chr1_3:6554994-6555013 Msa0100080:intron 40.0%
!! GTCTTAGTTCTGAGAACAAG+AGG + chr1_3:6555032-6555051 Msa0100080:CDS 40.0%
TAGGGATATGTCTTCACCTA+AGG + chr1_3:6555282-6555301 Msa0100080:CDS 40.0%
GTCTTCACCTAAGGCTTATA+AGG + chr1_3:6555291-6555310 Msa0100080:CDS 40.0%
! TGATGGATGGATATCAATGG+AGG + chr1_3:6555486-6555505 Msa0100080:CDS 40.0%
ATGGAGGAAATATGGTCAGA+AGG + chr1_3:6555502-6555521 Msa0100080:CDS 40.0%
!! TAAAGTAAGCTCTAGGAGAG+GGG - chr1_3:6555541-6555560 None:intergenic 40.0%
!! CTAAAGTAAGCTCTAGGAGA+GGG - chr1_3:6555542-6555561 None:intergenic 40.0%
!! TTCTTTTTAACTGGGCAGCT+TGG - chr1_3:6555578-6555597 None:intergenic 40.0%
AAGCTGCCCAGTTAAAAAGA+AGG + chr1_3:6555577-6555596 Msa0100080:CDS 40.0%
TTTCTGCTTTCTCATGACCA+TGG - chr1_3:6556190-6556209 None:intergenic 40.0%
GCATTATCAAGCTTCATGGT+TGG - chr1_3:6556299-6556318 None:intergenic 40.0%
! TGGAGCATTATCAAGCTTCA+TGG - chr1_3:6556303-6556322 None:intergenic 40.0%
! GCAAGTGCTGTAGTGAAATT+AGG - chr1_3:6556383-6556402 None:intergenic 40.0%
TGCAATGGAATCAACTTGTG+TGG + chr1_3:6554283-6554302 Msa0100080:exon 40.0%
ATACGAACCTTGAGTATGGA+AGG - chr1_3:6554338-6554357 None:intergenic 40.0%
AACTACTATGGATGGCCTTT+AGG - chr1_3:6554696-6554715 None:intergenic 40.0%
! TTGTGAACAGGACGAAGTTT+TGG + chr1_3:6554994-6555013 Msa0100080:intron 40.0%
!! GTCTTAGTTCTGAGAACAAG+AGG + chr1_3:6555032-6555051 Msa0100080:CDS 40.0%
TAGGGATATGTCTTCACCTA+AGG + chr1_3:6555282-6555301 Msa0100080:CDS 40.0%
GTCTTCACCTAAGGCTTATA+AGG + chr1_3:6555291-6555310 Msa0100080:CDS 40.0%
! TGATGGATGGATATCAATGG+AGG + chr1_3:6555486-6555505 Msa0100080:CDS 40.0%
ATGGAGGAAATATGGTCAGA+AGG + chr1_3:6555502-6555521 Msa0100080:CDS 40.0%
!! TAAAGTAAGCTCTAGGAGAG+GGG - chr1_3:6555541-6555560 None:intergenic 40.0%
!! CTAAAGTAAGCTCTAGGAGA+GGG - chr1_3:6555542-6555561 None:intergenic 40.0%
!! TTCTTTTTAACTGGGCAGCT+TGG - chr1_3:6555578-6555597 None:intergenic 40.0%
AAGCTGCCCAGTTAAAAAGA+AGG + chr1_3:6555577-6555596 Msa0100080:CDS 40.0%
TTTCTGCTTTCTCATGACCA+TGG - chr1_3:6556190-6556209 None:intergenic 40.0%
GCATTATCAAGCTTCATGGT+TGG - chr1_3:6556299-6556318 None:intergenic 40.0%
! TGGAGCATTATCAAGCTTCA+TGG - chr1_3:6556303-6556322 None:intergenic 40.0%
! GCAAGTGCTGTAGTGAAATT+AGG - chr1_3:6556383-6556402 None:intergenic 40.0%
! CTATGGATGGCCTTTAGGTT+GGG - chr1_3:6554691-6554710 None:intergenic 45.0%
ACTATGGATGGCCTTTAGGT+TGG - chr1_3:6554692-6554711 None:intergenic 45.0%
GGTGAAGACATATCCCTACA+TGG - chr1_3:6555280-6555299 None:intergenic 45.0%
!! CCTAAAGTAAGCTCTAGGAG+AGG - chr1_3:6555543-6555562 None:intergenic 45.0%
CCTCTCCTAGAGCTTACTTT+AGG + chr1_3:6555540-6555559 Msa0100080:CDS 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1_3:6555548-6555567 None:intergenic 45.0%
CTAAAGGAGCTTCTTCACTC+TGG - chr1_3:6556229-6556248 None:intergenic 45.0%
CAGAGTGAAGAAGCTCCTTT+AGG + chr1_3:6556227-6556246 Msa0100080:CDS 45.0%
! CTATGGATGGCCTTTAGGTT+GGG - chr1_3:6554691-6554710 None:intergenic 45.0%
ACTATGGATGGCCTTTAGGT+TGG - chr1_3:6554692-6554711 None:intergenic 45.0%
GGTGAAGACATATCCCTACA+TGG - chr1_3:6555280-6555299 None:intergenic 45.0%
!! CCTAAAGTAAGCTCTAGGAG+AGG - chr1_3:6555543-6555562 None:intergenic 45.0%
CCTCTCCTAGAGCTTACTTT+AGG + chr1_3:6555540-6555559 Msa0100080:CDS 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1_3:6555548-6555567 None:intergenic 45.0%
CTAAAGGAGCTTCTTCACTC+TGG - chr1_3:6556229-6556248 None:intergenic 45.0%
CAGAGTGAAGAAGCTCCTTT+AGG + chr1_3:6556227-6556246 Msa0100080:CDS 45.0%
! TACGAAGGAGAGCACAACCA+TGG + chr1_3:6556170-6556189 Msa0100080:CDS 50.0%
!! GCACTTGCCACTGCTATTTC+TGG + chr1_3:6556395-6556414 Msa0100080:CDS 50.0%
! TACGAAGGAGAGCACAACCA+TGG + chr1_3:6556170-6556189 Msa0100080:CDS 50.0%
!! GCACTTGCCACTGCTATTTC+TGG + chr1_3:6556395-6556414 Msa0100080:CDS 50.0%
AACTGGGCAGCTTGGAGCAT+AGG - chr1_3:6555570-6555589 None:intergenic 55.0%
AACTGGGCAGCTTGGAGCAT+AGG - chr1_3:6555570-6555589 None:intergenic 55.0%
GCAGGAGGGGCGGAAACTTA+GGG - chr1_3:6554669-6554688 None:intergenic 60.0%
!! TTTAGGTTGGGCAGGAGGGG+CGG - chr1_3:6554679-6554698 None:intergenic 60.0%
!! GCCTTTAGGTTGGGCAGGAG+GGG - chr1_3:6554682-6554701 None:intergenic 60.0%
!! GGCCTTTAGGTTGGGCAGGA+GGG - chr1_3:6554683-6554702 None:intergenic 60.0%
!! TGGCCTTTAGGTTGGGCAGG+AGG - chr1_3:6554684-6554703 None:intergenic 60.0%
!! GGATGGCCTTTAGGTTGGGC+AGG - chr1_3:6554687-6554706 None:intergenic 60.0%
GCAGGAGGGGCGGAAACTTA+GGG - chr1_3:6554669-6554688 None:intergenic 60.0%
!! TTTAGGTTGGGCAGGAGGGG+CGG - chr1_3:6554679-6554698 None:intergenic 60.0%
!! GCCTTTAGGTTGGGCAGGAG+GGG - chr1_3:6554682-6554701 None:intergenic 60.0%
!! GGCCTTTAGGTTGGGCAGGA+GGG - chr1_3:6554683-6554702 None:intergenic 60.0%
!! TGGCCTTTAGGTTGGGCAGG+AGG - chr1_3:6554684-6554703 None:intergenic 60.0%
!! GGATGGCCTTTAGGTTGGGC+AGG - chr1_3:6554687-6554706 None:intergenic 60.0%
GGCAGGAGGGGCGGAAACTT+AGG - chr1_3:6554670-6554689 None:intergenic 65.0%
GCCCCTCCTGCCCAACCTAA+AGG + chr1_3:6554678-6554697 Msa0100080:intron 65.0%
GGCAGGAGGGGCGGAAACTT+AGG - chr1_3:6554670-6554689 None:intergenic 65.0%
GCCCCTCCTGCCCAACCTAA+AGG + chr1_3:6554678-6554697 Msa0100080:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 6554277 6556613 6554277 ID=Msa0100080;Name=Msa0100080
chr1_3 mRNA 6554277 6556613 6554277 ID=Msa0100080-mRNA-1;Parent=Msa0100080;Name=Msa0100080-mRNA-1;_AED=0.33;_eAED=0.33;_QI=10|1|1|1|1|1|4|156|284
chr1_3 exon 6554277 6554349 6554277 ID=Msa0100080-mRNA-1:exon:2471;Parent=Msa0100080-mRNA-1
chr1_3 exon 6555004 6555348 6555004 ID=Msa0100080-mRNA-1:exon:2472;Parent=Msa0100080-mRNA-1
chr1_3 exon 6555482 6555598 6555482 ID=Msa0100080-mRNA-1:exon:2473;Parent=Msa0100080-mRNA-1
chr1_3 exon 6556128 6556613 6556128 ID=Msa0100080-mRNA-1:exon:2474;Parent=Msa0100080-mRNA-1
chr1_3 five_prime_UTR 6554277 6554286 6554277 ID=Msa0100080-mRNA-1:five_prime_utr;Parent=Msa0100080-mRNA-1
chr1_3 CDS 6554287 6554349 6554287 ID=Msa0100080-mRNA-1:cds;Parent=Msa0100080-mRNA-1
chr1_3 CDS 6555004 6555348 6555004 ID=Msa0100080-mRNA-1:cds;Parent=Msa0100080-mRNA-1
chr1_3 CDS 6555482 6555598 6555482 ID=Msa0100080-mRNA-1:cds;Parent=Msa0100080-mRNA-1
chr1_3 CDS 6556128 6556457 6556128 ID=Msa0100080-mRNA-1:cds;Parent=Msa0100080-mRNA-1
chr1_3 three_prime_UTR 6556458 6556613 6556458 ID=Msa0100080-mRNA-1:three_prime_utr;Parent=Msa0100080-mRNA-1
Gene Sequence

>Msa0100080

ATGGAATCAACTTGTGTGGATACTTCACTTAACCTTAACGTTAATGTTCCTTCCATACTCAAGGACGAAGTTTTGGTTGAAGAGTTACATCGTCTTAGTTCTGAGAACAAGAGGCTAAATGAAACATTGACTAACATGTGTGAGAACTATGAGGCTATGCAAAAGCAATTGAATCAATTGATGAATCAAAATTTTGAAAACCAAACACAACAATCAAAGAAAAGAAAAGCTGAGAGTGAAAGTTGCATCAATATGTTTGGTAATGTTAGAGGCATTAATATTATCAATAATAATGAGTGCAGCACTGTTACTGATGAAGAATCATTAATCAAAAGGCCATGTAGGGATATGTCTTCACCTAAGGCTTATAAGGTTCTTGTGAAGACAGAAGCATCTAGTAATAGCTTATATGTGATGGATGGATATCAATGGAGGAAATATGGTCAGAAGGTTACTAGAGATAACCCCTCTCCTAGAGCTTACTTTAGGTGCTCCTATGCTCCAAGCTGCCCAGTTAAAAAGAAGGTGCAAAAAAGTGTAGAAGACCCTACTATACTAGTTGCAACATACGAAGGAGAGCACAACCATGGTCATGAGAAAGCAGAAAAATCAATGATATCAAGCCAGAGTGAAGAAGCTCCTTTAGGTTCAGTTCATGTTACTTCACCTCAACAAATTATTCAAAGAACATGTCCAACCATGAAGCTTGATAATGCTCCAAAATCATCTATTCAGCAATTTTTGGTTCAACAAATGGCTACTTCTTTAACAAATGATCCTAATTTCACTACAGCACTTGCCACTGCTATTTCTGGAAGAATTTTGGACCATACTTCTAATAAGGCCAAATGGTGA
Protein sequence

>Msa0100080

MESTCVDTSLNLNVNVPSILKDEVLVEELHRLSSENKRLNETLTNMCENYEAMQKQLNQLMNQNFENQTQQSKKRKAESESCINMFGNVRGINIINNNECSTVTDEESLIKRPCRDMSSPKAYKVLVKTEASSNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSYAPSCPVKKKVQKSVEDPTILVATYEGEHNHGHEKAEKSMISSQSEEAPLGSVHVTSPQQIIQRTCPTMKLDNAPKSSIQQFLVQQMATSLTNDPNFTTALATAISGRILDHTSNKAKW*