Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189260 | XP_003593089.1 | 88.444 | 649 | 42 | 4 | 1 | 636 | 1 | 629 | 0.0 | 1107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189260 | sp|A5YVF1|SGS3_SOLLC | 50.575 | 435 | 202 | 5 | 209 | 633 | 195 | 626 | 1.30e-137 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189260 | G7IK02 | 88.444 | 649 | 42 | 4 | 1 | 636 | 1 | 629 | 0.0 | 1107 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189260 | Msa0231600 | 0.824148 | 9.443635e-54 | -8.615850e-47 |
| Msa0189260 | Msa0241750 | 0.801071 | 1.070340e-48 | -8.615850e-47 |
| Msa0189260 | Msa0270820 | 0.905941 | 2.518534e-80 | -8.615850e-47 |
| Msa0189260 | Msa0309690 | 0.824683 | 7.067855e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189260 | MtrunA17_Chr2g0278291 | 88.444 | 649 | 42 | 4 | 1 | 636 | 1 | 629 | 0.0 | 1107 |
| Msa0189260 | MtrunA17_Chr3g0131291 | 50.448 | 446 | 207 | 4 | 199 | 630 | 195 | 640 | 4.33e-149 | 446 |
| Msa0189260 | MtrunA17_Chr3g0131301 | 51.685 | 445 | 201 | 4 | 200 | 630 | 270 | 714 | 1.05e-145 | 439 |
| Msa0189260 | MtrunA17_Chr1g0205401 | 30.818 | 159 | 81 | 6 | 318 | 457 | 316 | 464 | 5.04e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189260 | AT5G23570.1 | 48.037 | 433 | 210 | 5 | 209 | 628 | 190 | 620 | 1.47e-131 | 400 |
| Msa0189260 | AT5G23570.3 | 48.037 | 433 | 210 | 5 | 209 | 628 | 190 | 620 | 1.47e-131 | 400 |
| Msa0189260 | AT5G23570.4 | 53.526 | 312 | 134 | 4 | 211 | 513 | 192 | 501 | 1.52e-115 | 355 |
| Msa0189260 | AT5G23570.2 | 53.526 | 312 | 134 | 4 | 211 | 513 | 192 | 501 | 1.52e-115 | 355 |
Find 144 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTGGAACTAGTCAAAA+TGG | 0.187396 | 2_1:-4668139 | None:intergenic |
| TTCAGCTTCTGGATCAAATT+TGG | 0.188895 | 2_1:-4664938 | None:intergenic |
| TACTCTTCTTGCTCCCTTCA+TGG | 0.190892 | 2_1:-4665390 | None:intergenic |
| GGCGGAAAGCGCCAGCTTTA+TGG | 0.215269 | 2_1:+4666234 | Msa0189260:CDS |
| TCACTTCCATTAAGAGTCTT+TGG | 0.276457 | 2_1:-4665028 | None:intergenic |
| GATTCTCCAAAGACTCTTAA+TGG | 0.276888 | 2_1:+4665022 | Msa0189260:CDS |
| CGCTTTCCGCCTGGGACAAA+TGG | 0.291352 | 2_1:-4666222 | None:intergenic |
| TAAAGCTGGCGCTTTCCGCC+TGG | 0.298968 | 2_1:-4666231 | None:intergenic |
| GCAAGAAGAGTAAGTGGTTT+AGG | 0.299348 | 2_1:+4665401 | Msa0189260:CDS |
| TGGAAGTGAAAACGGAGTTT+TGG | 0.320583 | 2_1:+4665042 | Msa0189260:CDS |
| CCAGCATGCCAAGACGGTCC+TGG | 0.333435 | 2_1:+4665493 | Msa0189260:CDS |
| CTATACACAGTTTCCAGCTT+TGG | 0.336271 | 2_1:-4664779 | None:intergenic |
| CCATCCTTGCAATCCTTAGA+TGG | 0.340828 | 2_1:-4665106 | None:intergenic |
| TTATGGATCATGAAATTGTT+TGG | 0.351581 | 2_1:+4665698 | Msa0189260:CDS |
| CTTGATTGCTTCAGTGATTA+CGG | 0.365128 | 2_1:+4666039 | Msa0189260:CDS |
| AGTTGATACAGCTCCATCTA+AGG | 0.372872 | 2_1:+4665093 | Msa0189260:CDS |
| GGGCAGTGCCACCGAGTTGC+TGG | 0.377036 | 2_1:-4665472 | None:intergenic |
| CCAGGACCGTCTTGGCATGC+TGG | 0.377905 | 2_1:-4665493 | None:intergenic |
| TCAAAGAGCAAGGAAGAGAT+AGG | 0.378403 | 2_1:+4666175 | Msa0189260:CDS |
| GGTTGAACTTGAGAAGGAAT+TGG | 0.394812 | 2_1:+4667924 | Msa0189260:CDS |
| CGTTTGTTCTGAATTCGATT+TGG | 0.395201 | 2_1:-4664849 | None:intergenic |
| CAGCATGCCAAGACGGTCCT+GGG | 0.400226 | 2_1:+4665494 | Msa0189260:CDS |
| GAATTGTAGTGGACAGGAAT+GGG | 0.406577 | 2_1:+4666003 | Msa0189260:intron |
| TCTGAATTCGATTTGGTGTC+GGG | 0.407799 | 2_1:-4664842 | None:intergenic |
| CATGCATTTGAACTAGAATT+CGG | 0.408902 | 2_1:-4664908 | None:intergenic |
| AGAAAGCTGTTAATATTAAA+CGG | 0.423077 | 2_1:+4667999 | Msa0189260:exon |
| CAGTGATTACGGTGCATTGA+AGG | 0.427500 | 2_1:+4666050 | Msa0189260:CDS |
| TTCTGAATTCGATTTGGTGT+CGG | 0.427939 | 2_1:-4664843 | None:intergenic |
| CGGCTGATTGAATTTGTAAC+CGG | 0.429012 | 2_1:-4664807 | None:intergenic |
| GAGAGGAGCTCCATTGATAA+GGG | 0.430174 | 2_1:+4665633 | Msa0189260:CDS |
| CTATTGGAACTAGTCAAAAT+GGG | 0.431934 | 2_1:-4668138 | None:intergenic |
| TTCGGAGAACACCAAGGCAT+TGG | 0.440286 | 2_1:-4664890 | None:intergenic |
| GGGGCTATTGATTGGTATCA+TGG | 0.440863 | 2_1:+4665514 | Msa0189260:CDS |
| GAATGATTTGTATTTGATCA+AGG | 0.441882 | 2_1:-4667518 | None:intergenic |
| AAAAGCATCAACGCTTTCTT+CGG | 0.442560 | 2_1:-4664756 | None:intergenic |
| TTATATACTTGGCTTTCAAA+TGG | 0.443445 | 2_1:+4668186 | Msa0189260:three_prime_UTR |
| GGAGAGGAGCTCCATTGATA+AGG | 0.444345 | 2_1:+4665632 | Msa0189260:CDS |
| AGGAAGAGATAGGGAAGCTT+GGG | 0.449387 | 2_1:+4666185 | Msa0189260:CDS |
| CAAATCGAATTCAGAACAAA+CGG | 0.451808 | 2_1:+4664850 | Msa0189260:CDS |
| GCTTCTGGATCAAATTTGGT+TGG | 0.454560 | 2_1:-4664934 | None:intergenic |
| TCAACAGCTTGACATTTGTA+AGG | 0.458482 | 2_1:+4666719 | Msa0189260:CDS |
| CAAGAAGCGATGTGTGTCAA+TGG | 0.465507 | 2_1:+4667594 | Msa0189260:CDS |
| TTGTCCTAGAATGATTCAAA+AGG | 0.466010 | 2_1:-4665546 | None:intergenic |
| CGTAATCACTGAAGCAATCA+AGG | 0.468384 | 2_1:-4666038 | None:intergenic |
| GCTTCACCACCCCTTATCAA+TGG | 0.470736 | 2_1:-4665643 | None:intergenic |
| ACTCTTAATGGAAGTGAAAA+CGG | 0.471327 | 2_1:+4665034 | Msa0189260:CDS |
| TCGGAGAACACCAAGGCATT+GGG | 0.474823 | 2_1:-4664889 | None:intergenic |
| CAGGACCGTCTTGGCATGCT+GGG | 0.475050 | 2_1:-4665492 | None:intergenic |
| ACGGTCCTGGGGCTATTGAT+TGG | 0.476688 | 2_1:+4665506 | Msa0189260:CDS |
| AAAGCTGGCGCTTTCCGCCT+GGG | 0.477327 | 2_1:-4666230 | None:intergenic |
| TGTCCTAGAATGATTCAAAA+GGG | 0.479440 | 2_1:-4665545 | None:intergenic |
| TTGAAGGCTCGACACTCATA+TGG | 0.479633 | 2_1:+4666066 | Msa0189260:CDS |
| ATTCTAGGACAATAAAAGTA+AGG | 0.480913 | 2_1:+4665557 | Msa0189260:CDS |
| CCATCTAAGGATTGCAAGGA+TGG | 0.485298 | 2_1:+4665106 | Msa0189260:CDS |
| AAGGAAGAGATAGGGAAGCT+TGG | 0.486839 | 2_1:+4666184 | Msa0189260:CDS |
| AATTAGATCATATCAAGAAA+TGG | 0.487848 | 2_1:+4666662 | Msa0189260:CDS |
| ACCGGAGAGAAAAGCCATGA+AGG | 0.488739 | 2_1:+4665376 | Msa0189260:CDS |
| GGGTCTCGATAATAAAGTTA+TGG | 0.500345 | 2_1:+4665681 | Msa0189260:CDS |
| CAAAATGGGGAACAATACTT+TGG | 0.501868 | 2_1:-4668124 | None:intergenic |
| TGTGAAAACATTGAGAATGA+AGG | 0.504092 | 2_1:+4665163 | Msa0189260:CDS |
| GTATTCATAATGACAACCAT+TGG | 0.504257 | 2_1:-4665724 | None:intergenic |
| AAGATTAAGCACATCAATGA+TGG | 0.509281 | 2_1:+4666693 | Msa0189260:CDS |
| TGAATTGTAGTGGACAGGAA+TGG | 0.510814 | 2_1:+4666002 | Msa0189260:intron |
| GAAGAAGCAGTGGCAAGAGC+AGG | 0.513257 | 2_1:+4667903 | Msa0189260:CDS |
| TGAGTTGAATTGTAGTGGAC+AGG | 0.515959 | 2_1:+4665997 | Msa0189260:intron |
| TTCAACTTTCAAATTAAACT+CGG | 0.516735 | 2_1:-4668074 | None:intergenic |
| TGGTGAAGCCAATGGACTGT+GGG | 0.519314 | 2_1:+4665657 | Msa0189260:CDS |
| TCAACTTTCAAATTAAACTC+GGG | 0.529179 | 2_1:-4668073 | None:intergenic |
| TCATCAATCAATAGCTGCAA+AGG | 0.534515 | 2_1:+4667539 | Msa0189260:CDS |
| GGGTTATAATGGACCAGGAC+TGG | 0.535110 | 2_1:+4664967 | Msa0189260:CDS |
| CAATAGCCCCAGGACCGTCT+TGG | 0.535212 | 2_1:-4665501 | None:intergenic |
| AGCTCCATCTAAGGATTGCA+AGG | 0.537739 | 2_1:+4665102 | Msa0189260:CDS |
| TGTGAAAACATTGATGATGA+AGG | 0.539155 | 2_1:+4665241 | Msa0189260:CDS |
| AAGGGAGCAAGAAGAGTAAG+TGG | 0.541250 | 2_1:+4665395 | Msa0189260:CDS |
| CCCAACTGTGAAAACATTGA+GGG | 0.544229 | 2_1:+4665196 | Msa0189260:CDS |
| TATGAATACGAAATATGAGC+AGG | 0.544610 | 2_1:+4665738 | Msa0189260:CDS |
| TTCATAATGACAACCATTGG+AGG | 0.548996 | 2_1:-4665721 | None:intergenic |
| GCGCCAGCTTTATGGCTACA+TGG | 0.549024 | 2_1:+4666242 | Msa0189260:CDS |
| CGAATTCTAGTTCAAATGCA+TGG | 0.550899 | 2_1:+4664909 | Msa0189260:CDS |
| TAACAAAAGCAATAACCTAC+AGG | 0.551722 | 2_1:+4664991 | Msa0189260:CDS |
| TAATTTGAAAGTTGAAAGTG+AGG | 0.551731 | 2_1:+4668081 | Msa0189260:three_prime_UTR |
| AAATCGAATTCAGAACAAAC+GGG | 0.552785 | 2_1:+4664851 | Msa0189260:CDS |
| GTTGAAAGTGAGGGTTGATG+AGG | 0.554497 | 2_1:+4668091 | Msa0189260:three_prime_UTR |
| CCAAGGTGATCCCAATGCCT+TGG | 0.554508 | 2_1:+4664879 | Msa0189260:CDS |
| AAGCCATGTAGCCATAAAGC+TGG | 0.555114 | 2_1:-4666245 | None:intergenic |
| CACTGCCCAGCATGCCAAGA+CGG | 0.555632 | 2_1:+4665487 | Msa0189260:CDS |
| AGTCTCAAGACAAGGATATG+AGG | 0.556736 | 2_1:+4667818 | Msa0189260:CDS |
| CAAAGAGCAAGGAAGAGATA+GGG | 0.560062 | 2_1:+4666176 | Msa0189260:CDS |
| CGACACTCATATGGTCCACA+TGG | 0.561709 | 2_1:+4666075 | Msa0189260:CDS |
| GATGGTCAATGCGATGATGA+AGG | 0.562158 | 2_1:+4665124 | Msa0189260:CDS |
| TACAAGCATTTCAAAGAGCA+AGG | 0.562650 | 2_1:+4666165 | Msa0189260:CDS |
| CACAATGAGGTAACTTGTTG+TGG | 0.562679 | 2_1:-4665066 | None:intergenic |
| CAAGGATATGAGGCAATTCG+AGG | 0.564054 | 2_1:+4667828 | Msa0189260:CDS |
| ATGGTCCACATGGGCACCGA+GGG | 0.564785 | 2_1:+4666085 | Msa0189260:CDS |
| TTGAAAGTGAGGGTTGATGA+GGG | 0.564992 | 2_1:+4668092 | Msa0189260:three_prime_UTR |
| GAAACTGTGTATAGAGTGAC+CGG | 0.566329 | 2_1:+4664788 | Msa0189260:CDS |
| AGAACAAACGGGTGAATCCA+AGG | 0.569706 | 2_1:+4664862 | Msa0189260:CDS |
| CCAAGGCATTGGGATCACCT+TGG | 0.571456 | 2_1:-4664879 | None:intergenic |
| TGTAAGAATCCATTTGTCCC+AGG | 0.572821 | 2_1:+4666213 | Msa0189260:CDS |
| TGAAATTGTTTGGCCTCCAA+TGG | 0.573059 | 2_1:+4665708 | Msa0189260:CDS |
| GAGGAAGAGTGCTCGAGGAG+AGG | 0.576937 | 2_1:+4665616 | Msa0189260:CDS |
| GAGACCCTCCCACAGTCCAT+TGG | 0.578085 | 2_1:-4665665 | None:intergenic |
| AATTGTAGTGGACAGGAATG+GGG | 0.578878 | 2_1:+4666004 | Msa0189260:intron |
| GTGTCGGGTACTTTGCGACT+CGG | 0.579867 | 2_1:-4664827 | None:intergenic |
| TTTGAAAACATGCAGAGAAG+TGG | 0.580756 | 2_1:+4668041 | Msa0189260:three_prime_UTR |
| CCGGAGAGAAAAGCCATGAA+GGG | 0.589269 | 2_1:+4665377 | Msa0189260:CDS |
| TTTAAATAAACTGACAGTTG+AGG | 0.590653 | 2_1:+4665438 | Msa0189260:CDS |
| GATGACACTGACTCAGACAC+CGG | 0.590929 | 2_1:+4665358 | Msa0189260:CDS |
| TCTAAATAACCTGCTACAGA+TGG | 0.591043 | 2_1:-4666129 | None:intergenic |
| TGAAGCCAATGGACTGTGGG+AGG | 0.591308 | 2_1:+4665660 | Msa0189260:CDS |
| TGTGAAAACATTGAGGGTGA+AGG | 0.591966 | 2_1:+4665202 | Msa0189260:CDS |
| TAGGACAATAAAAGTAAGGA+GGG | 0.593634 | 2_1:+4665561 | Msa0189260:CDS |
| CTAGGACAATAAAAGTAAGG+AGG | 0.593953 | 2_1:+4665560 | Msa0189260:CDS |
| AGAGCAGGTTGAACTTGAGA+AGG | 0.595315 | 2_1:+4667918 | Msa0189260:CDS |
| AAGAGGGGTTATAATGGACC+AGG | 0.596010 | 2_1:+4664962 | Msa0189260:CDS |
| ACCCAACTGTGAAAACATTG+AGG | 0.597027 | 2_1:+4665195 | Msa0189260:CDS |
| AAATCAAAACACTCATCCCT+CGG | 0.597633 | 2_1:-4666101 | None:intergenic |
| ATAAGGGGTGGTGAAGCCAA+TGG | 0.600802 | 2_1:+4665649 | Msa0189260:CDS |
| TCATCATTGATTTCACGTTG+AGG | 0.608669 | 2_1:-4665274 | None:intergenic |
| TGATACCAATCAATAGCCCC+AGG | 0.609363 | 2_1:-4665511 | None:intergenic |
| GTGGTGAAGCCAATGGACTG+TGG | 0.610915 | 2_1:+4665656 | Msa0189260:CDS |
| GAAGCCAATGGACTGTGGGA+GGG | 0.618906 | 2_1:+4665661 | Msa0189260:CDS |
| TCATCTACAAAACAAGGAGG+AGG | 0.622985 | 2_1:+4666839 | Msa0189260:CDS |
| AGATCAGTTCACCAGCAACT+CGG | 0.626667 | 2_1:+4665461 | Msa0189260:CDS |
| CTTTGGAGGAAGAGTGCTCG+AGG | 0.629120 | 2_1:+4665611 | Msa0189260:CDS |
| CTCATCCCTCGGTGCCCATG+TGG | 0.630782 | 2_1:-4666090 | None:intergenic |
| AATTTGAAAGTTGAAAGTGA+GGG | 0.634922 | 2_1:+4668082 | Msa0189260:three_prime_UTR |
| AGCATGCCAAGACGGTCCTG+GGG | 0.639910 | 2_1:+4665495 | Msa0189260:CDS |
| TAGTACGTTCTCGCACAACA+TGG | 0.640572 | 2_1:-4666809 | None:intergenic |
| AGAACATCATCTACAAAACA+AGG | 0.644083 | 2_1:+4666833 | Msa0189260:CDS |
| GTCCTAGAATGATTCAAAAG+GGG | 0.646488 | 2_1:-4665544 | None:intergenic |
| GGAGCTCCATTGATAAGGGG+TGG | 0.652082 | 2_1:+4665637 | Msa0189260:CDS |
| AGAGGAGCTCCATTGATAAG+GGG | 0.656654 | 2_1:+4665634 | Msa0189260:CDS |
| TGTCTCTGAAGAAGAAGCAG+TGG | 0.660978 | 2_1:+4667893 | Msa0189260:CDS |
| TATTGGAACTAGTCAAAATG+GGG | 0.668339 | 2_1:-4668137 | None:intergenic |
| TTTCATGAAGTCTCAAGACA+AGG | 0.670284 | 2_1:+4667810 | Msa0189260:CDS |
| AAGAATCCATTTGTCCCAGG+CGG | 0.681732 | 2_1:+4666216 | Msa0189260:CDS |
| GTATCAACTTCAACACAATG+AGG | 0.689414 | 2_1:-4665079 | None:intergenic |
| TGAGCAGGATGAAAATAACA+AGG | 0.690724 | 2_1:+4665753 | Msa0189260:CDS |
| GACACTCATATGGTCCACAT+GGG | 0.691158 | 2_1:+4666076 | Msa0189260:CDS |
| TATGGTCCACATGGGCACCG+AGG | 0.701993 | 2_1:+4666084 | Msa0189260:CDS |
| TCAGTTCACCAGCAACTCGG+TGG | 0.721739 | 2_1:+4665464 | Msa0189260:CDS |
| CTAGAATTCGGAGAACACCA+AGG | 0.730614 | 2_1:-4664896 | None:intergenic |
| ACATCATCTACAAAACAAGG+AGG | 0.743357 | 2_1:+4666836 | Msa0189260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATTTTATTGAAAAAAT+AGG | - | chr2_1:4667331-4667350 | None:intergenic | 10.0% |
| !!! | TACAATTTTTATTATATACT+TGG | + | chr2_1:4668175-4668194 | Msa0189260:three_prime_UTR | 10.0% |
| !! | AATTAAAAGAAAATCACAAA+AGG | - | chr2_1:4665941-4665960 | None:intergenic | 15.0% |
| !! | AAATTATACAGAAAATAAGA+AGG | - | chr2_1:4666561-4666580 | None:intergenic | 15.0% |
| !!! | CTTATTTTCTGTATAATTTT+TGG | + | chr2_1:4666562-4666581 | Msa0189260:intron | 15.0% |
| !! | TCTAAAAAAGAATATATACA+AGG | - | chr2_1:4667476-4667495 | None:intergenic | 15.0% |
| !!! | TGTATATATTCTTTTTTAGA+TGG | + | chr2_1:4667476-4667495 | Msa0189260:intron | 15.0% |
| !! | GCGATTTAAAAACAAATAAA+AGG | - | chr2_1:4665838-4665857 | None:intergenic | 20.0% |
| !! | GGACACATAATATATAAAAA+GGG | - | chr2_1:4666376-4666395 | None:intergenic | 20.0% |
| !! | TGGACACATAATATATAAAA+AGG | - | chr2_1:4666377-4666396 | None:intergenic | 20.0% |
| !!! | TTCTGTATAATTTTTGGAAA+TGG | + | chr2_1:4666568-4666587 | Msa0189260:intron | 20.0% |
| !! | AATTAGATCATATCAAGAAA+TGG | + | chr2_1:4666662-4666681 | Msa0189260:CDS | 20.0% |
| !! | ATTGTTAGTATATAGATGTA+AGG | + | chr2_1:4667109-4667128 | Msa0189260:intron | 20.0% |
| !! | TTGTTAGTATATAGATGTAA+GGG | + | chr2_1:4667110-4667129 | Msa0189260:intron | 20.0% |
| !! | ATGATGAAAAAAAACTTCTA+TGG | + | chr2_1:4667445-4667464 | Msa0189260:intron | 20.0% |
| !! | ATGCAATTAGTAAACTATAA+GGG | - | chr2_1:4667669-4667688 | None:intergenic | 20.0% |
| !! | TATGCAATTAGTAAACTATA+AGG | - | chr2_1:4667670-4667689 | None:intergenic | 20.0% |
| !! | GATAATATCTTAAAAAAGCA+TGG | + | chr2_1:4667859-4667878 | Msa0189260:CDS | 20.0% |
| !! | AGAAAGCTGTTAATATTAAA+CGG | + | chr2_1:4667999-4668018 | Msa0189260:exon | 20.0% |
| !! | TTCAACTTTCAAATTAAACT+CGG | - | chr2_1:4668077-4668096 | None:intergenic | 20.0% |
| !! | TTCTCAATGTTTTCACAATT+GGG | - | chr2_1:4665160-4665179 | None:intergenic | 25.0% |
| !! | ATTCTCAATGTTTTCACAAT+TGG | - | chr2_1:4665161-4665180 | None:intergenic | 25.0% |
| !! | TCATCAATGTTTTCACAATT+GGG | - | chr2_1:4665238-4665257 | None:intergenic | 25.0% |
| !! | ATCATCAATGTTTTCACAAT+TGG | - | chr2_1:4665239-4665258 | None:intergenic | 25.0% |
| ! | TTTAAATAAACTGACAGTTG+AGG | + | chr2_1:4665438-4665457 | Msa0189260:CDS | 25.0% |
| !!! | ATTCTAGGACAATAAAAGTA+AGG | + | chr2_1:4665557-4665576 | Msa0189260:CDS | 25.0% |
| ! | TTATGGATCATGAAATTGTT+TGG | + | chr2_1:4665698-4665717 | Msa0189260:CDS | 25.0% |
| ! | GTAGTTTAAGAATTCTTAGA+TGG | + | chr2_1:4666467-4666486 | Msa0189260:intron | 25.0% |
| !!! | AGATGTTCTTATTTGGTTTT+TGG | + | chr2_1:4666524-4666543 | Msa0189260:intron | 25.0% |
| ! | TGATCTATCTATACTTGTTT+AGG | + | chr2_1:4666618-4666637 | Msa0189260:intron | 25.0% |
| ! | ATCTTCATAGACAAATCAAT+GGG | - | chr2_1:4666909-4666928 | None:intergenic | 25.0% |
| ! | AATCTTCATAGACAAATCAA+TGG | - | chr2_1:4666910-4666929 | None:intergenic | 25.0% |
| ! | TAATAAGTTGTGCATAGAAT+TGG | + | chr2_1:4666947-4666966 | Msa0189260:intron | 25.0% |
| ! | TGTTAGTATATAGATGTAAG+GGG | + | chr2_1:4667111-4667130 | Msa0189260:intron | 25.0% |
| ! | CAATTAGTTAGTTAGTTAGT+TGG | + | chr2_1:4667160-4667179 | Msa0189260:intron | 25.0% |
| !!! | TTATTTAAAGACTTGCTGAT+AGG | - | chr2_1:4667210-4667229 | None:intergenic | 25.0% |
| !! | TGTTCATTCTTTTCAATTAG+TGG | + | chr2_1:4667347-4667366 | Msa0189260:intron | 25.0% |
| !! | GTTCATTCTTTTCAATTAGT+GGG | + | chr2_1:4667348-4667367 | Msa0189260:intron | 25.0% |
| ! | GATGTTATGAATTCACAAAT+TGG | + | chr2_1:4667386-4667405 | Msa0189260:intron | 25.0% |
| !! | GAATGATTTGTATTTGATCA+AGG | - | chr2_1:4667521-4667540 | None:intergenic | 25.0% |
| ! | TCAATCTTCTTTAAACAGAA+TGG | + | chr2_1:4667774-4667793 | Msa0189260:intron | 25.0% |
| !! | TGCATGTTTTCAAATGTTAA+CGG | - | chr2_1:4668035-4668054 | None:intergenic | 25.0% |
| ! | TCAACTTTCAAATTAAACTC+GGG | - | chr2_1:4668076-4668095 | None:intergenic | 25.0% |
| ! | TAATTTGAAAGTTGAAAGTG+AGG | + | chr2_1:4668081-4668100 | Msa0189260:three_prime_UTR | 25.0% |
| ! | AATTTGAAAGTTGAAAGTGA+GGG | + | chr2_1:4668082-4668101 | Msa0189260:three_prime_UTR | 25.0% |
| ! | TAACCAAAGCTAAAAACTAT+TGG | - | chr2_1:4668157-4668176 | None:intergenic | 25.0% |
| !! | TTATATACTTGGCTTTCAAA+TGG | + | chr2_1:4668186-4668205 | Msa0189260:three_prime_UTR | 25.0% |
| CAAATCGAATTCAGAACAAA+CGG | + | chr2_1:4664850-4664869 | Msa0189260:CDS | 30.0% | |
| AAATCGAATTCAGAACAAAC+GGG | + | chr2_1:4664851-4664870 | Msa0189260:CDS | 30.0% | |
| CATGCATTTGAACTAGAATT+CGG | - | chr2_1:4664911-4664930 | None:intergenic | 30.0% | |
| TAACAAAAGCAATAACCTAC+AGG | + | chr2_1:4664991-4665010 | Msa0189260:CDS | 30.0% | |
| ACTCTTAATGGAAGTGAAAA+CGG | + | chr2_1:4665034-4665053 | Msa0189260:CDS | 30.0% | |
| ! | TGTTTTCACAATTGGGTTTT+GGG | - | chr2_1:4665153-4665172 | None:intergenic | 30.0% |
| ! | ATGTTTTCACAATTGGGTTT+TGG | - | chr2_1:4665154-4665173 | None:intergenic | 30.0% |
| TGTGAAAACATTGAGAATGA+AGG | + | chr2_1:4665163-4665182 | Msa0189260:CDS | 30.0% | |
| ! | TGTTTTCACAATTGGGTTTT+GGG | - | chr2_1:4665153-4665172 | None:intergenic | 30.0% |
| ! | ATGTTTTCACAATTGGGTTT+TGG | - | chr2_1:4665154-4665173 | None:intergenic | 30.0% |
| !! | TGTGAAAACATTGATGATGA+AGG | + | chr2_1:4665241-4665260 | Msa0189260:CDS | 30.0% |
| TGTCCTAGAATGATTCAAAA+GGG | - | chr2_1:4665548-4665567 | None:intergenic | 30.0% | |
| TTGTCCTAGAATGATTCAAA+AGG | - | chr2_1:4665549-4665568 | None:intergenic | 30.0% | |
| TAGGACAATAAAAGTAAGGA+GGG | + | chr2_1:4665561-4665580 | Msa0189260:CDS | 30.0% | |
| GTATTCATAATGACAACCAT+TGG | - | chr2_1:4665727-4665746 | None:intergenic | 30.0% | |
| TATGAATACGAAATATGAGC+AGG | + | chr2_1:4665738-4665757 | Msa0189260:CDS | 30.0% | |
| AAAAGGACTAAGACTCTTAT+AGG | - | chr2_1:4665924-4665943 | None:intergenic | 30.0% | |
| CTTTCCACAAGATGAAAAAT+TGG | - | chr2_1:4666397-4666416 | None:intergenic | 30.0% | |
| ! | TTTTCATCTTGTGGAAAGAT+TGG | + | chr2_1:4666399-4666418 | Msa0189260:intron | 30.0% |
| TTTCATCTTGTGGAAAGATT+GGG | + | chr2_1:4666400-4666419 | Msa0189260:intron | 30.0% | |
| TACTTCTCTCTATTTCACTA+AGG | + | chr2_1:4666492-4666511 | Msa0189260:intron | 30.0% | |
| ACTTCTCTCTATTTCACTAA+GGG | + | chr2_1:4666493-4666512 | Msa0189260:intron | 30.0% | |
| ! | TGGTGTTAGATGTTCTTATT+TGG | + | chr2_1:4666517-4666536 | Msa0189260:intron | 30.0% |
| AAGATTAAGCACATCAATGA+TGG | + | chr2_1:4666693-4666712 | Msa0189260:CDS | 30.0% | |
| AGAACATCATCTACAAAACA+AGG | + | chr2_1:4666833-4666852 | Msa0189260:CDS | 30.0% | |
| !! | TAGTTGGTTAGTTTGTTATG+TGG | + | chr2_1:4667176-4667195 | Msa0189260:intron | 30.0% |
| GTCTTTAAATAACCCTCAAT+TGG | + | chr2_1:4667218-4667237 | Msa0189260:intron | 30.0% | |
| TGAATTCATAACATCCATAC+CGG | - | chr2_1:4667381-4667400 | None:intergenic | 30.0% | |
| !!! | CACAAATTGGTTTTCTTTCT+TGG | + | chr2_1:4667399-4667418 | Msa0189260:intron | 30.0% |
| !!! | AGCTTTCTTTTTGTCACTTT+TGG | + | chr2_1:4667692-4667711 | Msa0189260:intron | 30.0% |
| CAAGATTGAATCTTACATAC+TGG | - | chr2_1:4667735-4667754 | None:intergenic | 30.0% | |
| ! | GCATGTTTTCAAATGTTAAC+GGG | - | chr2_1:4668034-4668053 | None:intergenic | 30.0% |
| TATTGGAACTAGTCAAAATG+GGG | - | chr2_1:4668140-4668159 | None:intergenic | 30.0% | |
| CTATTGGAACTAGTCAAAAT+GGG | - | chr2_1:4668141-4668160 | None:intergenic | 30.0% | |
| ACTATTGGAACTAGTCAAAA+TGG | - | chr2_1:4668142-4668161 | None:intergenic | 30.0% | |
| !!! | GTTCCAATAGTTTTTAGCTT+TGG | + | chr2_1:4668151-4668170 | Msa0189260:three_prime_UTR | 30.0% |
| !! | AAAAGCATCAACGCTTTCTT+CGG | - | chr2_1:4664759-4664778 | None:intergenic | 35.0% |
| !! | TTCTGAATTCGATTTGGTGT+CGG | - | chr2_1:4664846-4664865 | None:intergenic | 35.0% |
| ! | CGTTTGTTCTGAATTCGATT+TGG | - | chr2_1:4664852-4664871 | None:intergenic | 35.0% |
| !! | CGAATTCTAGTTCAAATGCA+TGG | + | chr2_1:4664909-4664928 | Msa0189260:CDS | 35.0% |
| TTCAGCTTCTGGATCAAATT+TGG | - | chr2_1:4664941-4664960 | None:intergenic | 35.0% | |
| CTGAAAAAGAGGGGTTATAA+TGG | + | chr2_1:4664956-4664975 | Msa0189260:CDS | 35.0% | |
| GATTCTCCAAAGACTCTTAA+TGG | + | chr2_1:4665022-4665041 | Msa0189260:CDS | 35.0% | |
| TCACTTCCATTAAGAGTCTT+TGG | - | chr2_1:4665031-4665050 | None:intergenic | 35.0% | |
| GTATCAACTTCAACACAATG+AGG | - | chr2_1:4665082-4665101 | None:intergenic | 35.0% | |
| ! | GTTTTCACAATTGGGTTTTG+GGG | - | chr2_1:4665152-4665171 | None:intergenic | 35.0% |
| ! | ATGTTTTCACAGTTGGGTTT+CGG | - | chr2_1:4665193-4665212 | None:intergenic | 35.0% |
| ! | TGATTTCACGTTGAGGTTTT+CGG | - | chr2_1:4665270-4665289 | None:intergenic | 35.0% |
| !! | TCATCATTGATTTCACGTTG+AGG | - | chr2_1:4665277-4665296 | None:intergenic | 35.0% |
| GTCCTAGAATGATTCAAAAG+GGG | - | chr2_1:4665547-4665566 | None:intergenic | 35.0% | |
| CTAGGACAATAAAAGTAAGG+AGG | + | chr2_1:4665560-4665579 | Msa0189260:CDS | 35.0% | |
| GGGTCTCGATAATAAAGTTA+TGG | + | chr2_1:4665681-4665700 | Msa0189260:CDS | 35.0% | |
| TTCATAATGACAACCATTGG+AGG | - | chr2_1:4665724-4665743 | None:intergenic | 35.0% | |
| TGAGCAGGATGAAAATAACA+AGG | + | chr2_1:4665753-4665772 | Msa0189260:CDS | 35.0% | |
| CTTGATTGCTTCAGTGATTA+CGG | + | chr2_1:4666039-4666058 | Msa0189260:CDS | 35.0% | |
| AAATCAAAACACTCATCCCT+CGG | - | chr2_1:4666104-4666123 | None:intergenic | 35.0% | |
| ! | ATTTTTGAACCATCTGTAGC+AGG | + | chr2_1:4666120-4666139 | Msa0189260:CDS | 35.0% |
| TCTAAATAACCTGCTACAGA+TGG | - | chr2_1:4666132-4666151 | None:intergenic | 35.0% | |
| TACAAGCATTTCAAAGAGCA+AGG | + | chr2_1:4666165-4666184 | Msa0189260:CDS | 35.0% | |
| ! | GTGTCCAATTTTTCATCTTG+TGG | + | chr2_1:4666390-4666409 | Msa0189260:intron | 35.0% |
| TTCATCTTGTGGAAAGATTG+GGG | + | chr2_1:4666401-4666420 | Msa0189260:intron | 35.0% | |
| TTTGAAGATGACAACTGCTT+TGG | + | chr2_1:4666445-4666464 | Msa0189260:intron | 35.0% | |
| TCAACAGCTTGACATTTGTA+AGG | + | chr2_1:4666719-4666738 | Msa0189260:CDS | 35.0% | |
| ACATCATCTACAAAACAAGG+AGG | + | chr2_1:4666836-4666855 | Msa0189260:CDS | 35.0% | |
| !! | TTTGCTGTTTACCCTCAATA+CGG | - | chr2_1:4666985-4667004 | None:intergenic | 35.0% |
| TATTGAGGGTAAACAGCAAA+AGG | + | chr2_1:4666985-4667004 | Msa0189260:intron | 35.0% | |
| AGATGTAAGGGGAATTATAG+TGG | + | chr2_1:4667122-4667141 | Msa0189260:intron | 35.0% | |
| AAGGGGAATTATAGTGGTTA+AGG | + | chr2_1:4667128-4667147 | Msa0189260:intron | 35.0% | |
| AGGGGAATTATAGTGGTTAA+GGG | + | chr2_1:4667129-4667148 | Msa0189260:intron | 35.0% | |
| AATAACCCTCAATTGGTAGA+AGG | + | chr2_1:4667225-4667244 | Msa0189260:intron | 35.0% | |
| ATAACCCTCAATTGGTAGAA+GGG | + | chr2_1:4667226-4667245 | Msa0189260:intron | 35.0% | |
| !! | TTGGTTTTCTTTCTTGGTTC+TGG | + | chr2_1:4667405-4667424 | Msa0189260:intron | 35.0% |
| TCATCAATCAATAGCTGCAA+AGG | + | chr2_1:4667539-4667558 | Msa0189260:CDS | 35.0% | |
| !!! | TTTTGGAACCCATAACTATG+TGG | + | chr2_1:4667709-4667728 | Msa0189260:intron | 35.0% |
| TTTCATGAAGTCTCAAGACA+AGG | + | chr2_1:4667810-4667829 | Msa0189260:CDS | 35.0% | |
| TTTGAAAACATGCAGAGAAG+TGG | + | chr2_1:4668041-4668060 | Msa0189260:three_prime_UTR | 35.0% | |
| CAAAATGGGGAACAATACTT+TGG | - | chr2_1:4668127-4668146 | None:intergenic | 35.0% | |
| CTATACACAGTTTCCAGCTT+TGG | - | chr2_1:4664782-4664801 | None:intergenic | 40.0% | |
| GAAACTGTGTATAGAGTGAC+CGG | + | chr2_1:4664788-4664807 | Msa0189260:CDS | 40.0% | |
| CGGCTGATTGAATTTGTAAC+CGG | - | chr2_1:4664810-4664829 | None:intergenic | 40.0% | |
| !! | TCTGAATTCGATTTGGTGTC+GGG | - | chr2_1:4664845-4664864 | None:intergenic | 40.0% |
| GCTTCTGGATCAAATTTGGT+TGG | - | chr2_1:4664937-4664956 | None:intergenic | 40.0% | |
| TGATCCAGAAGCTGAAAAAG+AGG | + | chr2_1:4664945-4664964 | Msa0189260:CDS | 40.0% | |
| GATCCAGAAGCTGAAAAAGA+GGG | + | chr2_1:4664946-4664965 | Msa0189260:CDS | 40.0% | |
| ATCCAGAAGCTGAAAAAGAG+GGG | + | chr2_1:4664947-4664966 | Msa0189260:CDS | 40.0% | |
| !! | TTGCTTTTGTTAACCAGTCC+TGG | - | chr2_1:4664983-4665002 | None:intergenic | 40.0% |
| ! | TGGAAGTGAAAACGGAGTTT+TGG | + | chr2_1:4665042-4665061 | Msa0189260:CDS | 40.0% |
| !! | CACAATGAGGTAACTTGTTG+TGG | - | chr2_1:4665069-4665088 | None:intergenic | 40.0% |
| ! | AGTTGATACAGCTCCATCTA+AGG | + | chr2_1:4665093-4665112 | Msa0189260:CDS | 40.0% |
| ! | TGTTTTCACAGTTGGGTTTC+GGG | - | chr2_1:4665192-4665211 | None:intergenic | 40.0% |
| ACCCAACTGTGAAAACATTG+AGG | + | chr2_1:4665195-4665214 | Msa0189260:CDS | 40.0% | |
| ! | CCCTCAATGTTTTCACAGTT+GGG | - | chr2_1:4665199-4665218 | None:intergenic | 40.0% |
| CCCAACTGTGAAAACATTGA+GGG | + | chr2_1:4665196-4665215 | Msa0189260:CDS | 40.0% | |
| ! | ACCCTCAATGTTTTCACAGT+TGG | - | chr2_1:4665200-4665219 | None:intergenic | 40.0% |
| TGTGAAAACATTGAGGGTGA+AGG | + | chr2_1:4665202-4665221 | Msa0189260:CDS | 40.0% | |
| GCAAGAAGAGTAAGTGGTTT+AGG | + | chr2_1:4665401-4665420 | Msa0189260:CDS | 40.0% | |
| ! | AGCCCCTTTTGAATCATTCT+AGG | + | chr2_1:4665542-4665561 | Msa0189260:CDS | 40.0% |
| !!! | TCGAGCGTTTTCTGAAACTT+TGG | + | chr2_1:4665594-4665613 | Msa0189260:CDS | 40.0% |
| !!! | AGCGTTTTCTGAAACTTTGG+AGG | + | chr2_1:4665597-4665616 | Msa0189260:CDS | 40.0% |
| TGAAATTGTTTGGCCTCCAA+TGG | + | chr2_1:4665708-4665727 | Msa0189260:CDS | 40.0% | |
| TACACATTGCAGCTAGTTGT+TGG | + | chr2_1:4665859-4665878 | Msa0189260:intron | 40.0% | |
| TCAGTGAGGTTAAACTACAG+AGG | - | chr2_1:4665980-4665999 | None:intergenic | 40.0% | |
| CACTACAATTCAACTCAGTG+AGG | - | chr2_1:4665994-4666013 | None:intergenic | 40.0% | |
| ! | CTCACTGAGTTGAATTGTAG+TGG | + | chr2_1:4665992-4666011 | Msa0189260:intron | 40.0% |
| !! | TGAGTTGAATTGTAGTGGAC+AGG | + | chr2_1:4665997-4666016 | Msa0189260:intron | 40.0% |
| !! | TGAATTGTAGTGGACAGGAA+TGG | + | chr2_1:4666002-4666021 | Msa0189260:intron | 40.0% |
| !! | GAATTGTAGTGGACAGGAAT+GGG | + | chr2_1:4666003-4666022 | Msa0189260:intron | 40.0% |
| !! | AATTGTAGTGGACAGGAATG+GGG | + | chr2_1:4666004-4666023 | Msa0189260:intron | 40.0% |
| CGTAATCACTGAAGCAATCA+AGG | - | chr2_1:4666041-4666060 | None:intergenic | 40.0% | |
| TCAAAGAGCAAGGAAGAGAT+AGG | + | chr2_1:4666175-4666194 | Msa0189260:CDS | 40.0% | |
| CAAAGAGCAAGGAAGAGATA+GGG | + | chr2_1:4666176-4666195 | Msa0189260:CDS | 40.0% | |
| TGTAAGAATCCATTTGTCCC+AGG | + | chr2_1:4666213-4666232 | Msa0189260:CDS | 40.0% | |
| ! | GATGTTTTCAACAAGCACTC+TGG | + | chr2_1:4666282-4666301 | Msa0189260:CDS | 40.0% |
| CTCTCTATTTCACTAAGGGA+TGG | + | chr2_1:4666497-4666516 | Msa0189260:intron | 40.0% | |
| TCATCTACAAAACAAGGAGG+AGG | + | chr2_1:4666839-4666858 | Msa0189260:CDS | 40.0% | |
| AGTTGTGCATAGAATTGGTG+AGG | + | chr2_1:4666952-4666971 | Msa0189260:intron | 40.0% | |
| GTAGCTGCTCGAGTATTTAT+TGG | + | chr2_1:4667060-4667079 | Msa0189260:intron | 40.0% | |
| TAACCCTCAATTGGTAGAAG+GGG | + | chr2_1:4667227-4667246 | Msa0189260:intron | 40.0% | |
| ATTCCCCTTCTACCAATTGA+GGG | - | chr2_1:4667233-4667252 | None:intergenic | 40.0% | |
| GTGACTCTATTGTAGCAGAA+AGG | + | chr2_1:4667296-4667315 | Msa0189260:intron | 40.0% | |
| !! | TCAATTAGTGGGTTCCTAAC+CGG | + | chr2_1:4667359-4667378 | Msa0189260:intron | 40.0% |
| ! | TCATAACATCCATACCGGTT+AGG | - | chr2_1:4667376-4667395 | None:intergenic | 40.0% |
| CATACTGGCCACATAGTTAT+GGG | - | chr2_1:4667720-4667739 | None:intergenic | 40.0% | |
| ACATACTGGCCACATAGTTA+TGG | - | chr2_1:4667721-4667740 | None:intergenic | 40.0% | |
| AGTCTCAAGACAAGGATATG+AGG | + | chr2_1:4667818-4667837 | Msa0189260:CDS | 40.0% | |
| GGTTGAACTTGAGAAGGAAT+TGG | + | chr2_1:4667924-4667943 | Msa0189260:CDS | 40.0% | |
| !! | TTGAAAGTGAGGGTTGATGA+GGG | + | chr2_1:4668092-4668111 | Msa0189260:three_prime_UTR | 40.0% |
| ! | CGTTGATGCTTTTCCAAAGC+TGG | + | chr2_1:4664766-4664785 | Msa0189260:CDS | 45.0% |
| AGAACAAACGGGTGAATCCA+AGG | + | chr2_1:4664862-4664881 | Msa0189260:CDS | 45.0% | |
| CTAGAATTCGGAGAACACCA+AGG | - | chr2_1:4664899-4664918 | None:intergenic | 45.0% | |
| !!! | AACCCCTCTTTTTCAGCTTC+TGG | - | chr2_1:4664952-4664971 | None:intergenic | 45.0% |
| !! | AAGAGGGGTTATAATGGACC+AGG | + | chr2_1:4664962-4664981 | Msa0189260:CDS | 45.0% |
| !! | GAGAATCGCTTTTCACCTGT+AGG | - | chr2_1:4665009-4665028 | None:intergenic | 45.0% |
| AGCTCCATCTAAGGATTGCA+AGG | + | chr2_1:4665102-4665121 | Msa0189260:CDS | 45.0% | |
| CCATCCTTGCAATCCTTAGA+TGG | - | chr2_1:4665109-4665128 | None:intergenic | 45.0% | |
| CCATCTAAGGATTGCAAGGA+TGG | + | chr2_1:4665106-4665125 | Msa0189260:CDS | 45.0% | |
| GATGGTCAATGCGATGATGA+AGG | + | chr2_1:4665124-4665143 | Msa0189260:CDS | 45.0% | |
| TACTCTTCTTGCTCCCTTCA+TGG | - | chr2_1:4665393-4665412 | None:intergenic | 45.0% | |
| AAGGGAGCAAGAAGAGTAAG+TGG | + | chr2_1:4665395-4665414 | Msa0189260:CDS | 45.0% | |
| AGATCAGTTCACCAGCAACT+CGG | + | chr2_1:4665461-4665480 | Msa0189260:CDS | 45.0% | |
| TGATACCAATCAATAGCCCC+AGG | - | chr2_1:4665514-4665533 | None:intergenic | 45.0% | |
| ! | GGGGCTATTGATTGGTATCA+TGG | + | chr2_1:4665514-4665533 | Msa0189260:CDS | 45.0% |
| GAGAGGAGCTCCATTGATAA+GGG | + | chr2_1:4665633-4665652 | Msa0189260:CDS | 45.0% | |
| AGAGGAGCTCCATTGATAAG+GGG | + | chr2_1:4665634-4665653 | Msa0189260:CDS | 45.0% | |
| CAGTGATTACGGTGCATTGA+AGG | + | chr2_1:4666050-4666069 | Msa0189260:CDS | 45.0% | |
| TTGAAGGCTCGACACTCATA+TGG | + | chr2_1:4666066-4666085 | Msa0189260:CDS | 45.0% | |
| GACACTCATATGGTCCACAT+GGG | + | chr2_1:4666076-4666095 | Msa0189260:CDS | 45.0% | |
| AAGGAAGAGATAGGGAAGCT+TGG | + | chr2_1:4666184-4666203 | Msa0189260:CDS | 45.0% | |
| AGGAAGAGATAGGGAAGCTT+GGG | + | chr2_1:4666185-4666204 | Msa0189260:CDS | 45.0% | |
| AAGAATCCATTTGTCCCAGG+CGG | + | chr2_1:4666216-4666235 | Msa0189260:CDS | 45.0% | |
| AAGCCATGTAGCCATAAAGC+TGG | - | chr2_1:4666248-4666267 | None:intergenic | 45.0% | |
| TAGTACGTTCTCGCACAACA+TGG | - | chr2_1:4666812-4666831 | None:intergenic | 45.0% | |
| TGAGGATGCTTTCCGTATTG+AGG | + | chr2_1:4666970-4666989 | Msa0189260:intron | 45.0% | |
| GAGGATGCTTTCCGTATTGA+GGG | + | chr2_1:4666971-4666990 | Msa0189260:intron | 45.0% | |
| AAATACTCGAGCAGCTACCA+CGG | - | chr2_1:4667058-4667077 | None:intergenic | 45.0% | |
| GATTCCCCTTCTACCAATTG+AGG | - | chr2_1:4667234-4667253 | None:intergenic | 45.0% | |
| CAAGAAGCGATGTGTGTCAA+TGG | + | chr2_1:4667594-4667613 | Msa0189260:CDS | 45.0% | |
| CAAGGATATGAGGCAATTCG+AGG | + | chr2_1:4667828-4667847 | Msa0189260:CDS | 45.0% | |
| ! | TGTCTCTGAAGAAGAAGCAG+TGG | + | chr2_1:4667893-4667912 | Msa0189260:CDS | 45.0% |
| ! | AGAGCAGGTTGAACTTGAGA+AGG | + | chr2_1:4667918-4667937 | Msa0189260:CDS | 45.0% |
| !! | GTTGAAAGTGAGGGTTGATG+AGG | + | chr2_1:4668091-4668110 | Msa0189260:three_prime_UTR | 45.0% |
| ! | TCGGAGAACACCAAGGCATT+GGG | - | chr2_1:4664892-4664911 | None:intergenic | 50.0% |
| TTCGGAGAACACCAAGGCAT+TGG | - | chr2_1:4664893-4664912 | None:intergenic | 50.0% | |
| !! | GGGTTATAATGGACCAGGAC+TGG | + | chr2_1:4664967-4664986 | Msa0189260:CDS | 50.0% |
| !! | GATGACACTGACTCAGACAC+CGG | + | chr2_1:4665358-4665377 | Msa0189260:CDS | 50.0% |
| ACCGGAGAGAAAAGCCATGA+AGG | + | chr2_1:4665376-4665395 | Msa0189260:CDS | 50.0% | |
| ! | CCCTTCATGGCTTTTCTCTC+CGG | - | chr2_1:4665380-4665399 | None:intergenic | 50.0% |
| CCGGAGAGAAAAGCCATGAA+GGG | + | chr2_1:4665377-4665396 | Msa0189260:CDS | 50.0% | |
| GGAGAGGAGCTCCATTGATA+AGG | + | chr2_1:4665632-4665651 | Msa0189260:CDS | 50.0% | |
| GCTTCACCACCCCTTATCAA+TGG | - | chr2_1:4665646-4665665 | None:intergenic | 50.0% | |
| ATAAGGGGTGGTGAAGCCAA+TGG | + | chr2_1:4665649-4665668 | Msa0189260:CDS | 50.0% | |
| !! | TGGTGAAGCCAATGGACTGT+GGG | + | chr2_1:4665657-4665676 | Msa0189260:CDS | 50.0% |
| CGACACTCATATGGTCCACA+TGG | + | chr2_1:4666075-4666094 | Msa0189260:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_1:4666318-4666337 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_1:4666317-4666336 | None:intergenic | 50.0% | |
| AATACTCGAGCAGCTACCAC+GGG | - | chr2_1:4667057-4667076 | None:intergenic | 50.0% | |
| !! | TAGTGGGTTCCTAACCGGTA+TGG | + | chr2_1:4667364-4667383 | Msa0189260:intron | 50.0% |
| GTGTCGGGTACTTTGCGACT+CGG | - | chr2_1:4664830-4664849 | None:intergenic | 55.0% | |
| !! | CCAAGGCATTGGGATCACCT+TGG | - | chr2_1:4664882-4664901 | None:intergenic | 55.0% |
| CCAAGGTGATCCCAATGCCT+TGG | + | chr2_1:4664879-4664898 | Msa0189260:CDS | 55.0% | |
| TCAGTTCACCAGCAACTCGG+TGG | + | chr2_1:4665464-4665483 | Msa0189260:CDS | 55.0% | |
| ACGGTCCTGGGGCTATTGAT+TGG | + | chr2_1:4665506-4665525 | Msa0189260:CDS | 55.0% | |
| !! | CTTTGGAGGAAGAGTGCTCG+AGG | + | chr2_1:4665611-4665630 | Msa0189260:CDS | 55.0% |
| GGAGCTCCATTGATAAGGGG+TGG | + | chr2_1:4665637-4665656 | Msa0189260:CDS | 55.0% | |
| !! | GTGGTGAAGCCAATGGACTG+TGG | + | chr2_1:4665656-4665675 | Msa0189260:CDS | 55.0% |
| !! | TGAAGCCAATGGACTGTGGG+AGG | + | chr2_1:4665660-4665679 | Msa0189260:CDS | 55.0% |
| !! | GAAGCCAATGGACTGTGGGA+GGG | + | chr2_1:4665661-4665680 | Msa0189260:CDS | 55.0% |
| ! | GCGCCAGCTTTATGGCTACA+TGG | + | chr2_1:4666242-4666261 | Msa0189260:CDS | 55.0% |
| ACATGTCTTCCGATGTCCCG+TGG | + | chr2_1:4667038-4667057 | Msa0189260:intron | 55.0% | |
| GAAGAAGCAGTGGCAAGAGC+AGG | + | chr2_1:4667903-4667922 | Msa0189260:CDS | 55.0% | |
| CACTGCCCAGCATGCCAAGA+CGG | + | chr2_1:4665487-4665506 | Msa0189260:CDS | 60.0% | |
| CAGGACCGTCTTGGCATGCT+GGG | - | chr2_1:4665495-4665514 | None:intergenic | 60.0% | |
| CAGCATGCCAAGACGGTCCT+GGG | + | chr2_1:4665494-4665513 | Msa0189260:CDS | 60.0% | |
| AGCATGCCAAGACGGTCCTG+GGG | + | chr2_1:4665495-4665514 | Msa0189260:CDS | 60.0% | |
| CAATAGCCCCAGGACCGTCT+TGG | - | chr2_1:4665504-4665523 | None:intergenic | 60.0% | |
| !! | GAGGAAGAGTGCTCGAGGAG+AGG | + | chr2_1:4665616-4665635 | Msa0189260:CDS | 60.0% |
| GAGACCCTCCCACAGTCCAT+TGG | - | chr2_1:4665668-4665687 | None:intergenic | 60.0% | |
| ! | TATGGTCCACATGGGCACCG+AGG | + | chr2_1:4666084-4666103 | Msa0189260:CDS | 60.0% |
| !! | ATGGTCCACATGGGCACCGA+GGG | + | chr2_1:4666085-4666104 | Msa0189260:CDS | 60.0% |
| CGCTTTCCGCCTGGGACAAA+TGG | - | chr2_1:4666225-4666244 | None:intergenic | 60.0% | |
| AAAGCTGGCGCTTTCCGCCT+GGG | - | chr2_1:4666233-4666252 | None:intergenic | 60.0% | |
| TAAAGCTGGCGCTTTCCGCC+TGG | - | chr2_1:4666234-4666253 | None:intergenic | 60.0% | |
| !! | GGCGGAAAGCGCCAGCTTTA+TGG | + | chr2_1:4666234-4666253 | Msa0189260:CDS | 60.0% |
| GAGCAGCTACCACGGGACAT+CGG | - | chr2_1:4667050-4667069 | None:intergenic | 60.0% | |
| CCAGGACCGTCTTGGCATGC+TGG | - | chr2_1:4665496-4665515 | None:intergenic | 65.0% | |
| CCAGCATGCCAAGACGGTCC+TGG | + | chr2_1:4665493-4665512 | Msa0189260:CDS | 65.0% | |
| !! | CTCATCCCTCGGTGCCCATG+TGG | - | chr2_1:4666093-4666112 | None:intergenic | 65.0% |
| GGGCAGTGCCACCGAGTTGC+TGG | - | chr2_1:4665475-4665494 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 4664752 | 4668277 | 4664752 | ID=Msa0189260;Name=Msa0189260 |
| chr2_1 | mRNA | 4664752 | 4668277 | 4664752 | ID=Msa0189260-mRNA-1;Parent=Msa0189260;Name=Msa0189260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.4|1|1|1|5|266|636 |
| chr2_1 | exon | 4664752 | 4665774 | 4664752 | ID=Msa0189260-mRNA-1:exon:2011;Parent=Msa0189260-mRNA-1 |
| chr2_1 | exon | 4666012 | 4666303 | 4666012 | ID=Msa0189260-mRNA-1:exon:2012;Parent=Msa0189260-mRNA-1 |
| chr2_1 | exon | 4666640 | 4666860 | 4666640 | ID=Msa0189260-mRNA-1:exon:2013;Parent=Msa0189260-mRNA-1 |
| chr2_1 | exon | 4667495 | 4667649 | 4667495 | ID=Msa0189260-mRNA-1:exon:2014;Parent=Msa0189260-mRNA-1 |
| chr2_1 | exon | 4667792 | 4668277 | 4667792 | ID=Msa0189260-mRNA-1:exon:2015;Parent=Msa0189260-mRNA-1 |
| chr2_1 | CDS | 4664752 | 4665774 | 4664752 | ID=Msa0189260-mRNA-1:cds;Parent=Msa0189260-mRNA-1 |
| chr2_1 | CDS | 4666012 | 4666303 | 4666012 | ID=Msa0189260-mRNA-1:cds;Parent=Msa0189260-mRNA-1 |
| chr2_1 | CDS | 4666640 | 4666860 | 4666640 | ID=Msa0189260-mRNA-1:cds;Parent=Msa0189260-mRNA-1 |
| chr2_1 | CDS | 4667495 | 4667649 | 4667495 | ID=Msa0189260-mRNA-1:cds;Parent=Msa0189260-mRNA-1 |
| chr2_1 | CDS | 4667792 | 4668011 | 4667792 | ID=Msa0189260-mRNA-1:cds;Parent=Msa0189260-mRNA-1 |
| chr2_1 | three_prime_UTR | 4668012 | 4668277 | 4668012 | ID=Msa0189260-mRNA-1:three_prime_utr;Parent=Msa0189260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
