Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231600 | XP_003593089.1 | 88.715 | 638 | 39 | 4 | 1 | 625 | 1 | 618 | 0.0 | 1096 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231600 | sp|A5YVF1|SGS3_SOLLC | 50.935 | 428 | 197 | 5 | 209 | 626 | 195 | 619 | 1.97e-136 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231600 | G7IK02 | 88.715 | 638 | 39 | 4 | 1 | 625 | 1 | 618 | 0.0 | 1096 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0231600 | -0.808199 | 3.482206e-50 | -8.615850e-47 |
| Msa0189260 | Msa0231600 | 0.824148 | 9.443635e-54 | -8.615850e-47 |
| Msa0231600 | Msa0270820 | 0.833056 | 6.637968e-56 | -8.615850e-47 |
| Msa0231600 | Msa0309690 | 0.905777 | 2.999723e-80 | -8.615850e-47 |
| Msa0231600 | Msa0320500 | 0.806361 | 8.539766e-50 | -8.615850e-47 |
| Msa0231600 | Msa0380400 | -0.814132 | 1.799973e-51 | -8.615850e-47 |
| Msa0231600 | Msa0476170 | -0.811078 | 8.381097e-51 | -8.615850e-47 |
| Msa0231600 | Msa0693340 | -0.806193 | 9.262510e-50 | -8.615850e-47 |
| Msa0231600 | Msa0734250 | 0.800958 | 1.128954e-48 | -8.615850e-47 |
| Msa0231600 | Msa1130060 | 0.822765 | 1.988242e-53 | -8.615850e-47 |
| Msa0231600 | Msa1375610 | -0.804782 | 1.831168e-49 | -8.615850e-47 |
| Msa0231600 | Msa1376550 | -0.806937 | 6.453430e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231600 | MtrunA17_Chr2g0278291 | 88.715 | 638 | 39 | 4 | 1 | 625 | 1 | 618 | 0.0 | 1096 |
| Msa0231600 | MtrunA17_Chr3g0131291 | 50.679 | 442 | 204 | 4 | 199 | 626 | 195 | 636 | 1.70e-148 | 447 |
| Msa0231600 | MtrunA17_Chr3g0131301 | 51.927 | 441 | 198 | 4 | 200 | 626 | 270 | 710 | 1.22e-144 | 439 |
| Msa0231600 | MtrunA17_Chr1g0205401 | 31.250 | 160 | 81 | 6 | 317 | 457 | 315 | 464 | 7.08e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231600 | AT5G23570.1 | 48.372 | 430 | 207 | 5 | 209 | 625 | 190 | 617 | 1.35e-130 | 400 |
| Msa0231600 | AT5G23570.3 | 48.372 | 430 | 207 | 5 | 209 | 625 | 190 | 617 | 1.35e-130 | 400 |
| Msa0231600 | AT5G23570.4 | 53.846 | 312 | 133 | 4 | 211 | 513 | 192 | 501 | 1.67e-115 | 357 |
| Msa0231600 | AT5G23570.2 | 53.846 | 312 | 133 | 4 | 211 | 513 | 192 | 501 | 1.67e-115 | 357 |
Find 159 sgRNAs with CRISPR-Local
Find 402 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCTTCTGGATCAAATT+TGG | 0.188895 | 2_2:-3872066 | None:intergenic |
| TACTCTTCTTGCTCCCTTCA+TGG | 0.190892 | 2_2:-3872518 | None:intergenic |
| GGCGGAAAGCGCCAGCTTTA+TGG | 0.215269 | 2_2:+3873362 | Msa0231600:CDS |
| ACCTTCTCTTCTTTGTGATT+TGG | 0.274383 | 2_2:-3876829 | None:intergenic |
| TCACTTCCATTAAGAGTCTT+TGG | 0.276457 | 2_2:-3872156 | None:intergenic |
| GATTCTCCAAAGACTCTTAA+TGG | 0.276888 | 2_2:+3872150 | Msa0231600:CDS |
| AATTGGGGCTGAAGGGAAAA+AGG | 0.283715 | 2_2:+3876943 | Msa0231600:CDS |
| CGCTTTCCGCCTGGGACAAA+TGG | 0.291352 | 2_2:-3873350 | None:intergenic |
| TAAAGCTGGCGCTTTCCGCC+TGG | 0.298968 | 2_2:-3873359 | None:intergenic |
| GCAAGAAGAGTAAGTGGTTT+AGG | 0.299348 | 2_2:+3872529 | Msa0231600:CDS |
| TGGAAGTGAAAACGGAGTTT+TGG | 0.320583 | 2_2:+3872170 | Msa0231600:CDS |
| CCAGCATGCCAAGACGGTCC+TGG | 0.333435 | 2_2:+3872621 | Msa0231600:CDS |
| GAAAGAAGAGTCTGACGAAT+TGG | 0.333997 | 2_2:+3876926 | Msa0231600:CDS |
| CTATACACAGTTTCCAGCTT+TGG | 0.336271 | 2_2:-3871907 | None:intergenic |
| CCATCCTTGCAATCCTTAGA+TGG | 0.340828 | 2_2:-3872234 | None:intergenic |
| TTAAGGATCATGAAATTGTT+TGG | 0.345115 | 2_2:+3872826 | Msa0231600:CDS |
| TTCTTTGCCTCAGCAGCTGC+AGG | 0.352045 | 2_2:-3876885 | None:intergenic |
| CTTGATTGCTTCAGTGATTA+CGG | 0.365128 | 2_2:+3873167 | Msa0231600:CDS |
| AGTTGATACAGCTCCATCTA+AGG | 0.372872 | 2_2:+3872221 | Msa0231600:CDS |
| AAAGAAGAGTCTGACGAATT+GGG | 0.374643 | 2_2:+3876927 | Msa0231600:CDS |
| GGGCAGTGCCACCGAGTTGC+TGG | 0.377036 | 2_2:-3872600 | None:intergenic |
| CCAGGACCGTCTTGGCATGC+TGG | 0.377905 | 2_2:-3872621 | None:intergenic |
| TCAAAGAGCAAGGAAGAGAT+AGG | 0.378403 | 2_2:+3873303 | Msa0231600:CDS |
| GGTTGAACTTGAGAAGGAAT+TGG | 0.394812 | 2_2:+3875119 | Msa0231600:CDS |
| TGCTGCTCCTGCAGCTGCTG+AGG | 0.400029 | 2_2:+3876878 | Msa0231600:CDS |
| CAGCATGCCAAGACGGTCCT+GGG | 0.400226 | 2_2:+3872622 | Msa0231600:CDS |
| GAATTGTAGTGGACAGGAAT+GGG | 0.406577 | 2_2:+3873131 | Msa0231600:intron |
| TCTGAATTCGATTTGGTGTC+GGG | 0.407799 | 2_2:-3871970 | None:intergenic |
| CATGCATTTGAACTAGAATT+CGG | 0.408902 | 2_2:-3872036 | None:intergenic |
| AGGAAGAGATAGGGAAGCTT+GGG | 0.423393 | 2_2:+3873313 | Msa0231600:CDS |
| CAGTGATTACGGTGCATTGA+AGG | 0.427500 | 2_2:+3873178 | Msa0231600:CDS |
| TTCTGAATTCGATTTGGTGT+CGG | 0.427939 | 2_2:-3871971 | None:intergenic |
| CGGCTGATTGAATTTGTAAC+CGG | 0.429012 | 2_2:-3871935 | None:intergenic |
| GAGAGGAGCTCCATTGATAA+GGG | 0.430174 | 2_2:+3872761 | Msa0231600:CDS |
| TTCGGAGAACACCAAGGCAT+TGG | 0.440286 | 2_2:-3872018 | None:intergenic |
| GGGGCTATTGATTGGTATCA+TGG | 0.440863 | 2_2:+3872642 | Msa0231600:CDS |
| GAATGATTTGTATTTGATCA+AGG | 0.441882 | 2_2:-3874712 | None:intergenic |
| AAAAGCATCAACGCTTTCTT+CGG | 0.442560 | 2_2:-3871884 | None:intergenic |
| GGAGAGGAGCTCCATTGATA+AGG | 0.444345 | 2_2:+3872760 | Msa0231600:CDS |
| AGTTTGTTCTGAATTCGATT+TGG | 0.445545 | 2_2:-3871977 | None:intergenic |
| GCTTCTGGATCAAATTTGGT+TGG | 0.454560 | 2_2:-3872062 | None:intergenic |
| TCAACAGCTTGACATTTGTA+AGG | 0.458482 | 2_2:+3873895 | Msa0231600:CDS |
| TTGTCCTAGAATGATTCAAA+AGG | 0.466010 | 2_2:-3872674 | None:intergenic |
| CGTAATCACTGAAGCAATCA+AGG | 0.468384 | 2_2:-3873166 | None:intergenic |
| GGGTCTCGATAATAAAGTTA+AGG | 0.469529 | 2_2:+3872809 | Msa0231600:CDS |
| GCTTCACCACCCCTTATCAA+TGG | 0.470736 | 2_2:-3872771 | None:intergenic |
| ACTCTTAATGGAAGTGAAAA+CGG | 0.471327 | 2_2:+3872162 | Msa0231600:CDS |
| AAATCGAATTCAGAACAAAC+TGG | 0.472407 | 2_2:+3871979 | Msa0231600:CDS |
| TCGGAGAACACCAAGGCATT+GGG | 0.474823 | 2_2:-3872017 | None:intergenic |
| CAGGACCGTCTTGGCATGCT+GGG | 0.475050 | 2_2:-3872620 | None:intergenic |
| ACGGTCCTGGGGCTATTGAT+TGG | 0.476688 | 2_2:+3872634 | Msa0231600:CDS |
| AAAGCTGGCGCTTTCCGCCT+GGG | 0.477327 | 2_2:-3873358 | None:intergenic |
| TGTCCTAGAATGATTCAAAA+GGG | 0.479440 | 2_2:-3872673 | None:intergenic |
| TTGAAGGCTCGACACTCATA+TGG | 0.479633 | 2_2:+3873194 | Msa0231600:CDS |
| ATTCTAGGACAATAAAAGTA+AGG | 0.480913 | 2_2:+3872685 | Msa0231600:CDS |
| AAGGAAGAGATAGGGAAGCT+TGG | 0.481722 | 2_2:+3873312 | Msa0231600:CDS |
| CCATCTAAGGATTGCAAGGA+TGG | 0.485298 | 2_2:+3872234 | Msa0231600:CDS |
| GTCTGACGAATTGGGGCTGA+AGG | 0.486799 | 2_2:+3876935 | Msa0231600:CDS |
| AATTAGATCATATCAAGAAA+TGG | 0.487848 | 2_2:+3873838 | Msa0231600:CDS |
| ACCGGAGAGAAAAGCCATGA+AGG | 0.488739 | 2_2:+3872504 | Msa0231600:CDS |
| TGTGAAAACATTGAGAATGA+AGG | 0.504092 | 2_2:+3872291 | Msa0231600:CDS |
| GTATTCATAATGACAACCAT+TGG | 0.504257 | 2_2:-3872852 | None:intergenic |
| TTTCACAGAAGAATCTCCAT+TGG | 0.506501 | 2_2:-3874804 | None:intergenic |
| AAGATTAAGCACATCAATGA+TGG | 0.509281 | 2_2:+3873869 | Msa0231600:CDS |
| TGAATTGTAGTGGACAGGAA+TGG | 0.510814 | 2_2:+3873130 | Msa0231600:intron |
| GAAGAAGCAGTGGCAAGAGC+AGG | 0.513257 | 2_2:+3875098 | Msa0231600:CDS |
| TGAGTTGAATTGTAGTGGAC+AGG | 0.515959 | 2_2:+3873125 | Msa0231600:intron |
| AAAGAAAGAAGAGAAGGTGG+AGG | 0.516619 | 2_2:+3876902 | Msa0231600:CDS |
| TGGTGAAGCCAATGGACTGT+GGG | 0.519314 | 2_2:+3872785 | Msa0231600:CDS |
| GCTGCTGCACCTGCGAGTGG+TGG | 0.523717 | 2_2:+3876855 | Msa0231600:CDS |
| CCCAACTGTGAAAACATTGA+GGG | 0.534262 | 2_2:+3872324 | Msa0231600:CDS |
| TCATCAATCAATAGCTGCAA+AGG | 0.534515 | 2_2:+3874733 | Msa0231600:CDS |
| GGGTTATAATGGACCAGGAC+TGG | 0.535110 | 2_2:+3872095 | Msa0231600:CDS |
| CAATAGCCCCAGGACCGTCT+TGG | 0.535212 | 2_2:-3872629 | None:intergenic |
| AGCTCCATCTAAGGATTGCA+AGG | 0.537739 | 2_2:+3872230 | Msa0231600:CDS |
| TCATCATTGATTTCACATTG+AGG | 0.538114 | 2_2:-3872402 | None:intergenic |
| TGTGAAAACATTGATGATGA+AGG | 0.539155 | 2_2:+3872369 | Msa0231600:CDS |
| AAGGGAGCAAGAAGAGTAAG+TGG | 0.541250 | 2_2:+3872523 | Msa0231600:CDS |
| TTTATTGAGGGTTTCGATGA+GGG | 0.544478 | 2_2:+3876981 | Msa0231600:CDS |
| TATGAATACGAAATATGAGC+AGG | 0.544610 | 2_2:+3872866 | Msa0231600:CDS |
| CAAGAAGCGATGTGTGCCAA+TGG | 0.545772 | 2_2:+3874788 | Msa0231600:CDS |
| GGAGCAGCACCACCACTCGC+AGG | 0.548277 | 2_2:-3876864 | None:intergenic |
| CGATGAGGGAAGATCTGATA+CGG | 0.548910 | 2_2:+3876995 | Msa0231600:CDS |
| TTCATAATGACAACCATTGG+AGG | 0.548996 | 2_2:-3872849 | None:intergenic |
| GCGCCAGCTTTATGGCTACA+TGG | 0.549024 | 2_2:+3873370 | Msa0231600:CDS |
| CGAATTCTAGTTCAAATGCA+TGG | 0.550899 | 2_2:+3872037 | Msa0231600:CDS |
| TAACAAAAGCAATAACCTAC+AGG | 0.551722 | 2_2:+3872119 | Msa0231600:CDS |
| CCAAGGTGATCCCAATGCCT+TGG | 0.554508 | 2_2:+3872007 | Msa0231600:CDS |
| AAGCCATGTAGCCATAAAGC+TGG | 0.555114 | 2_2:-3873373 | None:intergenic |
| CACTGCCCAGCATGCCAAGA+CGG | 0.555632 | 2_2:+3872615 | Msa0231600:CDS |
| CAAGGATATGAGGCAATTCG+AGG | 0.558531 | 2_2:+3875023 | Msa0231600:CDS |
| CAAAGAGCAAGGAAGAGATA+GGG | 0.560062 | 2_2:+3873304 | Msa0231600:CDS |
| AGAACAAACTGGTGAATCCA+AGG | 0.561590 | 2_2:+3871990 | Msa0231600:CDS |
| CGACACTCATATGGTCCACA+TGG | 0.561709 | 2_2:+3873203 | Msa0231600:CDS |
| GATGGTCAATGCGATGATGA+AGG | 0.562158 | 2_2:+3872252 | Msa0231600:CDS |
| TACAAGCATTTCAAAGAGCA+AGG | 0.562650 | 2_2:+3873293 | Msa0231600:CDS |
| CACAATGAGGTAACTTGTTG+TGG | 0.562679 | 2_2:-3872194 | None:intergenic |
| GGCAAAGAAAGAAGAGAAGG+TGG | 0.564395 | 2_2:+3876899 | Msa0231600:CDS |
| ATGGTCCACATGGGCACCGA+GGG | 0.564785 | 2_2:+3873213 | Msa0231600:CDS |
| GTTGCTGCTGCACCTGCGAG+TGG | 0.566089 | 2_2:+3876852 | Msa0231600:CDS |
| GAAACTGTGTATAGAGTGAC+CGG | 0.566329 | 2_2:+3871916 | Msa0231600:CDS |
| GGTTGAGGAAAGTGATAACA+TGG | 0.567230 | 2_2:+3877016 | Msa0231600:CDS |
| AAGATTGCGAAGAGAACGAA+GGG | 0.567777 | 2_2:+3877060 | Msa0231600:CDS |
| AAGAAGAGTCTGACGAATTG+GGG | 0.570434 | 2_2:+3876928 | Msa0231600:CDS |
| CCAAGGCATTGGGATCACCT+TGG | 0.571456 | 2_2:-3872007 | None:intergenic |
| TGTAAGAATCCATTTGTCCC+AGG | 0.572821 | 2_2:+3873341 | Msa0231600:CDS |
| TGAAATTGTTTGGCCTCCAA+TGG | 0.573059 | 2_2:+3872836 | Msa0231600:CDS |
| GGGAAGATCTGATACGGTTG+AGG | 0.573960 | 2_2:+3877001 | Msa0231600:CDS |
| AGTCTCAAGACAAGGATATG+AGG | 0.576503 | 2_2:+3875013 | Msa0231600:CDS |
| GAGGAAGAGTGCTCGAGGAG+AGG | 0.576937 | 2_2:+3872744 | Msa0231600:CDS |
| GAGACCCTCCCACAGTCCAT+TGG | 0.578085 | 2_2:-3872793 | None:intergenic |
| AATTGTAGTGGACAGGAATG+GGG | 0.578878 | 2_2:+3873132 | Msa0231600:intron |
| GTGTCGGGTACTTTGCGACT+CGG | 0.579867 | 2_2:-3871955 | None:intergenic |
| ACCAAATCACAAAGAAGAGA+AGG | 0.580316 | 2_2:+3876828 | Msa0231600:CDS |
| ACCCAACTGTGAAAACATTG+AGG | 0.584656 | 2_2:+3872323 | Msa0231600:CDS |
| TGAGGCAAAGAAAGAAGAGA+AGG | 0.588560 | 2_2:+3876896 | Msa0231600:CDS |
| CCGGAGAGAAAAGCCATGAA+GGG | 0.589269 | 2_2:+3872505 | Msa0231600:CDS |
| TTTAAATAAACTGACAGTTG+AGG | 0.590653 | 2_2:+3872566 | Msa0231600:CDS |
| GATGACACTGACTCAGACAC+CGG | 0.590929 | 2_2:+3872486 | Msa0231600:CDS |
| TCTAAATAACCTGCTACAGA+TGG | 0.591043 | 2_2:-3873257 | None:intergenic |
| TGAAGCCAATGGACTGTGGG+AGG | 0.591308 | 2_2:+3872788 | Msa0231600:CDS |
| TGTGAAAACATTGAGGGTGA+AGG | 0.591966 | 2_2:+3872330 | Msa0231600:CDS |
| TAGGACAATAAAAGTAAGGA+GGG | 0.593634 | 2_2:+3872689 | Msa0231600:CDS |
| CTAGGACAATAAAAGTAAGG+AGG | 0.593953 | 2_2:+3872688 | Msa0231600:CDS |
| AGAGCAGGTTGAACTTGAGA+AGG | 0.595315 | 2_2:+3875113 | Msa0231600:CDS |
| AAGAGGGGTTATAATGGACC+AGG | 0.596010 | 2_2:+3872090 | Msa0231600:CDS |
| AAATCAAAACACTCATCCCT+CGG | 0.597633 | 2_2:-3873229 | None:intergenic |
| ATAAGGGGTGGTGAAGCCAA+TGG | 0.600802 | 2_2:+3872777 | Msa0231600:CDS |
| TGATACCAATCAATAGCCCC+AGG | 0.609363 | 2_2:-3872639 | None:intergenic |
| GTGGTGAAGCCAATGGACTG+TGG | 0.610915 | 2_2:+3872784 | Msa0231600:CDS |
| GAAGCCAATGGACTGTGGGA+GGG | 0.618906 | 2_2:+3872789 | Msa0231600:CDS |
| TCTGACGAATTGGGGCTGAA+GGG | 0.619777 | 2_2:+3876936 | Msa0231600:CDS |
| TCATCTACAAAACAAGGAGG+AGG | 0.622985 | 2_2:+3874015 | Msa0231600:CDS |
| AGATCAGTTCACCAGCAACT+CGG | 0.626667 | 2_2:+3872589 | Msa0231600:CDS |
| CTTTGGAGGAAGAGTGCTCG+AGG | 0.629120 | 2_2:+3872739 | Msa0231600:CDS |
| CTCATCCCTCGGTGCCCATG+TGG | 0.630782 | 2_2:-3873218 | None:intergenic |
| GATTGCGAAGAGAACGAAGG+GGG | 0.636404 | 2_2:+3877062 | Msa0231600:CDS |
| AGCATGCCAAGACGGTCCTG+GGG | 0.639910 | 2_2:+3872623 | Msa0231600:CDS |
| TAGTACGTTCTCGCACAACA+TGG | 0.640572 | 2_2:-3873985 | None:intergenic |
| AGAACATCATCTACAAAACA+AGG | 0.644083 | 2_2:+3874009 | Msa0231600:CDS |
| GTCCTAGAATGATTCAAAAG+GGG | 0.646488 | 2_2:-3872672 | None:intergenic |
| GGAGCTCCATTGATAAGGGG+TGG | 0.652082 | 2_2:+3872765 | Msa0231600:CDS |
| TGGCTCTGAAGAAGAAGCAG+TGG | 0.652506 | 2_2:+3875088 | Msa0231600:CDS |
| AGAGGAGCTCCATTGATAAG+GGG | 0.656654 | 2_2:+3872762 | Msa0231600:CDS |
| GAAGATTGCGAAGAGAACGA+AGG | 0.661043 | 2_2:+3877059 | Msa0231600:CDS |
| ATTGCGAAGAGAACGAAGGG+GGG | 0.670203 | 2_2:+3877063 | Msa0231600:CDS |
| AAGAATCCATTTGTCCCAGG+CGG | 0.681732 | 2_2:+3873344 | Msa0231600:CDS |
| TTTCACGAAGTCTCAAGACA+AGG | 0.687703 | 2_2:+3875005 | Msa0231600:CDS |
| GTATCAACTTCAACACAATG+AGG | 0.689414 | 2_2:-3872207 | None:intergenic |
| TGAGCAGGATGAAAATAACA+AGG | 0.690724 | 2_2:+3872881 | Msa0231600:CDS |
| GACACTCATATGGTCCACAT+GGG | 0.691158 | 2_2:+3873204 | Msa0231600:CDS |
| TATGGTCCACATGGGCACCG+AGG | 0.701993 | 2_2:+3873212 | Msa0231600:CDS |
| GTTGAGGAAAGTGATAACAT+GGG | 0.711747 | 2_2:+3877017 | Msa0231600:CDS |
| TAACATGGGATTTGAAAACG+TGG | 0.717088 | 2_2:+3877031 | Msa0231600:CDS |
| TCAGTTCACCAGCAACTCGG+TGG | 0.721739 | 2_2:+3872592 | Msa0231600:CDS |
| CTAGAATTCGGAGAACACCA+AGG | 0.730614 | 2_2:-3872024 | None:intergenic |
| AGATTGCGAAGAGAACGAAG+GGG | 0.734929 | 2_2:+3877061 | Msa0231600:CDS |
| ACATCATCTACAAAACAAGG+AGG | 0.743357 | 2_2:+3874012 | Msa0231600:CDS |
| AACATGGGATTTGAAAACGT+GGG | 0.788735 | 2_2:+3877032 | Msa0231600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATTTTATTGAAAAAAT+AGG | - | chr2_2:3874525-3874544 | None:intergenic | 10.0% |
| !!! | TACAATTTTTATTATATACT+TGG | + | chr2_2:3875370-3875389 | Msa0231600:intron | 10.0% |
| !!! | TTATTAGTATTTATTTTCTA+AGG | + | chr2_2:3875821-3875840 | Msa0231600:intron | 10.0% |
| !! | TTTGTATTTAAATTAGTTAA+GGG | - | chr2_2:3876477-3876496 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTAAATTAGTTA+AGG | - | chr2_2:3876478-3876497 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTAAATATTGC+AGG | + | chr2_2:3876616-3876635 | Msa0231600:intron | 10.0% |
| !!! | TAAAAAAATAATGTCATTTA+AGG | + | chr2_2:3876670-3876689 | Msa0231600:intron | 10.0% |
| !!! | AAAAAAATAATGTCATTTAA+GGG | + | chr2_2:3876671-3876690 | Msa0231600:intron | 10.0% |
| !! | AATTAAAAGAAAATCACAAA+AGG | - | chr2_2:3873069-3873088 | None:intergenic | 15.0% |
| !! | AAATTATACAGAAAATAAGA+AGG | - | chr2_2:3873737-3873756 | None:intergenic | 15.0% |
| !!! | CTTATTTTCTGTATAATTTT+TGG | + | chr2_2:3873738-3873757 | Msa0231600:intron | 15.0% |
| !!! | TGTATATATTCTTTTTTAGA+TGG | + | chr2_2:3874670-3874689 | Msa0231600:intron | 15.0% |
| !! | TAAATAAAATCTCAAGAATA+TGG | - | chr2_2:3875666-3875685 | None:intergenic | 15.0% |
| !!! | AGAGAGTATAAAATAAAATA+TGG | + | chr2_2:3876108-3876127 | Msa0231600:intron | 15.0% |
| !! | TTGTATTTAAATTAGTTAAG+GGG | - | chr2_2:3876476-3876495 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGCATTTTTAAAT+TGG | + | chr2_2:3876640-3876659 | Msa0231600:intron | 15.0% |
| !! | GCGATTTAAAAACAAATAAA+AGG | - | chr2_2:3872966-3872985 | None:intergenic | 20.0% |
| !! | GGACACATAATATATAAAAA+GGG | - | chr2_2:3873552-3873571 | None:intergenic | 20.0% |
| !! | TGGACACATAATATATAAAA+AGG | - | chr2_2:3873553-3873572 | None:intergenic | 20.0% |
| !!! | TTCTGTATAATTTTTGGAAA+TGG | + | chr2_2:3873744-3873763 | Msa0231600:intron | 20.0% |
| !! | AATTAGATCATATCAAGAAA+TGG | + | chr2_2:3873838-3873857 | Msa0231600:CDS | 20.0% |
| !! | TAATAAGTTGTGCATAAAAT+TGG | + | chr2_2:3874123-3874142 | Msa0231600:intron | 20.0% |
| !! | ATTGTTAGTATATAGATGAA+AGG | + | chr2_2:3874290-3874309 | Msa0231600:intron | 20.0% |
| !! | TTGTTAGTATATAGATGAAA+GGG | + | chr2_2:3874291-3874310 | Msa0231600:intron | 20.0% |
| !! | AAGAATTGAATCTTACATAT+TGG | - | chr2_2:3874929-3874948 | None:intergenic | 20.0% |
| !! | GATAATATCTTAAAAATGCA+TGG | + | chr2_2:3875054-3875073 | Msa0231600:CDS | 20.0% |
| !! | TAAAATTTCTTGATTAACTC+AGG | - | chr2_2:3875493-3875512 | None:intergenic | 20.0% |
| !!! | TTTTTAATATGCAACTAATC+AGG | - | chr2_2:3875619-3875638 | None:intergenic | 20.0% |
| !!! | TAGTATTTATTTTCTAAGGA+TGG | + | chr2_2:3875825-3875844 | Msa0231600:intron | 20.0% |
| !! | TATTCATTAAATGATGTATG+TGG | + | chr2_2:3875914-3875933 | Msa0231600:intron | 20.0% |
| !!! | TTTTTTCTTATAATAGTGAC+CGG | + | chr2_2:3875988-3876007 | Msa0231600:intron | 20.0% |
| !! | GTAATAAGCTTTACAATTAA+GGG | - | chr2_2:3876149-3876168 | None:intergenic | 20.0% |
| !! | AAATGAAAATTGAATTAGGA+GGG | - | chr2_2:3876248-3876267 | None:intergenic | 20.0% |
| !! | TTGCAAATGAAAATTGAATT+AGG | - | chr2_2:3876252-3876271 | None:intergenic | 20.0% |
| !! | AGAGTTGGATTAAAAAAAAT+GGG | - | chr2_2:3876766-3876785 | None:intergenic | 20.0% |
| !! | AAGAGTTGGATTAAAAAAAA+TGG | - | chr2_2:3876767-3876786 | None:intergenic | 20.0% |
| !!! | TAAAGTTGTCATTTTTATTG+AGG | + | chr2_2:3876968-3876987 | Msa0231600:CDS | 20.0% |
| !!! | AAAGTTGTCATTTTTATTGA+GGG | + | chr2_2:3876969-3876988 | Msa0231600:CDS | 20.0% |
| !! | TTCTCAATGTTTTCACAATT+GGG | - | chr2_2:3872288-3872307 | None:intergenic | 25.0% |
| !! | ATTCTCAATGTTTTCACAAT+TGG | - | chr2_2:3872289-3872308 | None:intergenic | 25.0% |
| !! | TCATCAATGTTTTCACAATT+GGG | - | chr2_2:3872366-3872385 | None:intergenic | 25.0% |
| !! | ATCATCAATGTTTTCACAAT+TGG | - | chr2_2:3872367-3872386 | None:intergenic | 25.0% |
| ! | TTTAAATAAACTGACAGTTG+AGG | + | chr2_2:3872566-3872585 | Msa0231600:CDS | 25.0% |
| !!! | ATTCTAGGACAATAAAAGTA+AGG | + | chr2_2:3872685-3872704 | Msa0231600:CDS | 25.0% |
| ! | TTAAGGATCATGAAATTGTT+TGG | + | chr2_2:3872826-3872845 | Msa0231600:CDS | 25.0% |
| ! | GTAGTTTAAGAATTCTTAGA+TGG | + | chr2_2:3873643-3873662 | Msa0231600:intron | 25.0% |
| !!! | AGATGTTCTTATTTGGTTTT+TGG | + | chr2_2:3873700-3873719 | Msa0231600:intron | 25.0% |
| ! | TGATCTATCTATACTTGTTT+AGG | + | chr2_2:3873794-3873813 | Msa0231600:intron | 25.0% |
| ! | ATCTTCATAGACAAATCAAT+GGG | - | chr2_2:3874085-3874104 | None:intergenic | 25.0% |
| ! | AATCTTCATAGACAAATCAA+TGG | - | chr2_2:3874086-3874105 | None:intergenic | 25.0% |
| ! | TGTTAGTATATAGATGAAAG+GGG | + | chr2_2:3874292-3874311 | Msa0231600:intron | 25.0% |
| ! | AGAGCAATTAATTAGTTAGT+TGG | + | chr2_2:3874337-3874356 | Msa0231600:intron | 25.0% |
| !! | TGTTCATTCTTTTCAATTAG+TGG | + | chr2_2:3874541-3874560 | Msa0231600:intron | 25.0% |
| !! | GTTCATTCTTTTCAATTAGT+GGG | + | chr2_2:3874542-3874561 | Msa0231600:intron | 25.0% |
| !!! | AGTTTTTTAGCATCATCATT+CGG | - | chr2_2:3874635-3874654 | None:intergenic | 25.0% |
| ! | ATATATACAATGATCAGTCA+TGG | - | chr2_2:3874659-3874678 | None:intergenic | 25.0% |
| !! | GAATGATTTGTATTTGATCA+AGG | - | chr2_2:3874715-3874734 | None:intergenic | 25.0% |
| !!! | TTTTGGAATACATAACTAAG+TGG | + | chr2_2:3874903-3874922 | Msa0231600:intron | 25.0% |
| ! | TCAATCTTCTTTAAACAGAA+TGG | + | chr2_2:3874969-3874988 | Msa0231600:intron | 25.0% |
| !! | TCCATGTTTTCAAATGTTAA+CGG | - | chr2_2:3875230-3875249 | None:intergenic | 25.0% |
| ! | TCAACTTTCAAATTAAACTC+AGG | - | chr2_2:3875271-3875290 | None:intergenic | 25.0% |
| ! | TAATTTGAAAGTTGAAAGTG+AGG | + | chr2_2:3875276-3875295 | Msa0231600:intron | 25.0% |
| ! | AATTTGAAAGTTGAAAGTGA+GGG | + | chr2_2:3875277-3875296 | Msa0231600:intron | 25.0% |
| ! | TAACCAAAGCTAAAAACTAT+TGG | - | chr2_2:3875352-3875371 | None:intergenic | 25.0% |
| !! | TTATATACTTGGCTTTCAAA+TGG | + | chr2_2:3875381-3875400 | Msa0231600:intron | 25.0% |
| ! | ATGACTAAATAAACTCAGTT+GGG | + | chr2_2:3875532-3875551 | Msa0231600:intron | 25.0% |
| ! | GTTGCATATTAAAAATACGA+AGG | + | chr2_2:3875624-3875643 | Msa0231600:intron | 25.0% |
| !!! | TATTTATTTTCTAAGGATGG+TGG | + | chr2_2:3875828-3875847 | Msa0231600:intron | 25.0% |
| ! | TACTTATAATAGTGATCTGA+GGG | - | chr2_2:3875875-3875894 | None:intergenic | 25.0% |
| ! | TTACTTATAATAGTGATCTG+AGG | - | chr2_2:3875876-3875895 | None:intergenic | 25.0% |
| ! | CGTAATAAGCTTTACAATTA+AGG | - | chr2_2:3876150-3876169 | None:intergenic | 25.0% |
| ! | ATTAGGAGGGAATAAAATTA+GGG | - | chr2_2:3876235-3876254 | None:intergenic | 25.0% |
| ! | AATTAGGAGGGAATAAAATT+AGG | - | chr2_2:3876236-3876255 | None:intergenic | 25.0% |
| ! | CAAATGAAAATTGAATTAGG+AGG | - | chr2_2:3876249-3876268 | None:intergenic | 25.0% |
| !! | TTTTGAATATGATGCAATAG+TGG | - | chr2_2:3876291-3876310 | None:intergenic | 25.0% |
| ! | AAATTAAACAAATATCCACG+TGG | - | chr2_2:3876599-3876618 | None:intergenic | 25.0% |
| !!! | TAAATATTGCAGGCTTTTTT+TGG | + | chr2_2:3876626-3876645 | Msa0231600:intron | 25.0% |
| ! | GATTAAAAAAAATGGGATGA+TGG | - | chr2_2:3876759-3876778 | None:intergenic | 25.0% |
| ! | AGTTTGTTCTGAATTCGATT+TGG | - | chr2_2:3871980-3871999 | None:intergenic | 30.0% |
| AAATCGAATTCAGAACAAAC+TGG | + | chr2_2:3871979-3871998 | Msa0231600:CDS | 30.0% | |
| CATGCATTTGAACTAGAATT+CGG | - | chr2_2:3872039-3872058 | None:intergenic | 30.0% | |
| TAACAAAAGCAATAACCTAC+AGG | + | chr2_2:3872119-3872138 | Msa0231600:CDS | 30.0% | |
| ACTCTTAATGGAAGTGAAAA+CGG | + | chr2_2:3872162-3872181 | Msa0231600:CDS | 30.0% | |
| ! | TGTTTTCACAATTGGGTTTT+GGG | - | chr2_2:3872281-3872300 | None:intergenic | 30.0% |
| ! | ATGTTTTCACAATTGGGTTT+TGG | - | chr2_2:3872282-3872301 | None:intergenic | 30.0% |
| TGTGAAAACATTGAGAATGA+AGG | + | chr2_2:3872291-3872310 | Msa0231600:CDS | 30.0% | |
| ! | TGTTTTCACAATTGGGTTTT+GGG | - | chr2_2:3872281-3872300 | None:intergenic | 30.0% |
| ! | ATGTTTTCACAATTGGGTTT+TGG | - | chr2_2:3872282-3872301 | None:intergenic | 30.0% |
| !! | TGTGAAAACATTGATGATGA+AGG | + | chr2_2:3872369-3872388 | Msa0231600:CDS | 30.0% |
| ! | TGATTTCACATTGAGGTTTT+CGG | - | chr2_2:3872398-3872417 | None:intergenic | 30.0% |
| !! | TCATCATTGATTTCACATTG+AGG | - | chr2_2:3872405-3872424 | None:intergenic | 30.0% |
| TGTCCTAGAATGATTCAAAA+GGG | - | chr2_2:3872676-3872695 | None:intergenic | 30.0% | |
| TTGTCCTAGAATGATTCAAA+AGG | - | chr2_2:3872677-3872696 | None:intergenic | 30.0% | |
| TAGGACAATAAAAGTAAGGA+GGG | + | chr2_2:3872689-3872708 | Msa0231600:CDS | 30.0% | |
| GTATTCATAATGACAACCAT+TGG | - | chr2_2:3872855-3872874 | None:intergenic | 30.0% | |
| TATGAATACGAAATATGAGC+AGG | + | chr2_2:3872866-3872885 | Msa0231600:CDS | 30.0% | |
| AAAAGGACTAAGACTCTTAT+AGG | - | chr2_2:3873052-3873071 | None:intergenic | 30.0% | |
| CTTTCCACAAGATGAAAAAT+TGG | - | chr2_2:3873573-3873592 | None:intergenic | 30.0% | |
| ! | TTTTCATCTTGTGGAAAGAT+TGG | + | chr2_2:3873575-3873594 | Msa0231600:intron | 30.0% |
| TTTCATCTTGTGGAAAGATT+GGG | + | chr2_2:3873576-3873595 | Msa0231600:intron | 30.0% | |
| TTTGAAGATAACAACTGCTT+TGG | + | chr2_2:3873621-3873640 | Msa0231600:intron | 30.0% | |
| TACTTCTCTCTATTTCACTA+AGG | + | chr2_2:3873668-3873687 | Msa0231600:intron | 30.0% | |
| ACTTCTCTCTATTTCACTAA+GGG | + | chr2_2:3873669-3873688 | Msa0231600:intron | 30.0% | |
| ! | TGGTGTTAGATGTTCTTATT+TGG | + | chr2_2:3873693-3873712 | Msa0231600:intron | 30.0% |
| AAGATTAAGCACATCAATGA+TGG | + | chr2_2:3873869-3873888 | Msa0231600:CDS | 30.0% | |
| AGAACATCATCTACAAAACA+AGG | + | chr2_2:3874009-3874028 | Msa0231600:CDS | 30.0% | |
| !! | TAGTTGGTTAGTTTGTTATG+TGG | + | chr2_2:3874353-3874372 | Msa0231600:intron | 30.0% |
| !! | CTATTTAAAGACTTGCTGAT+AGG | - | chr2_2:3874387-3874406 | None:intergenic | 30.0% |
| GTCTTTAAATAGCCGTAAAT+TGG | + | chr2_2:3874395-3874414 | Msa0231600:intron | 30.0% | |
| ! | CACAACTTGATTTTCTTTCT+TGG | + | chr2_2:3874593-3874612 | Msa0231600:intron | 30.0% |
| ! | TTGATTTTCTTTCTTGGTTC+TGG | + | chr2_2:3874599-3874618 | Msa0231600:intron | 30.0% |
| ATGCAATCAGTGAACTATAA+GGG | - | chr2_2:3874863-3874882 | None:intergenic | 30.0% | |
| TATGCAATCAGTGAACTATA+AGG | - | chr2_2:3874864-3874883 | None:intergenic | 30.0% | |
| !!! | CACTTTCTTTTTGTCACTTT+TGG | + | chr2_2:3874886-3874905 | Msa0231600:intron | 30.0% |
| ! | CCATGTTTTCAAATGTTAAC+GGG | - | chr2_2:3875229-3875248 | None:intergenic | 30.0% |
| TATTGGAACTAGTCAAAATG+GGG | - | chr2_2:3875335-3875354 | None:intergenic | 30.0% | |
| CTATTGGAACTAGTCAAAAT+GGG | - | chr2_2:3875336-3875355 | None:intergenic | 30.0% | |
| ACTATTGGAACTAGTCAAAA+TGG | - | chr2_2:3875337-3875356 | None:intergenic | 30.0% | |
| !!! | GTTCCAATAGTTTTTAGCTT+TGG | + | chr2_2:3875346-3875365 | Msa0231600:intron | 30.0% |
| ! | TATATGCATATTTTCACCTC+AGG | + | chr2_2:3875461-3875480 | Msa0231600:intron | 30.0% |
| CATGACTAAATAAACTCAGT+TGG | + | chr2_2:3875531-3875550 | Msa0231600:intron | 30.0% | |
| TAAGAACTTGTGCATAGAAT+TGG | + | chr2_2:3875713-3875732 | Msa0231600:intron | 30.0% | |
| TTGTGCATAGAATTGGTAAA+TGG | + | chr2_2:3875720-3875739 | Msa0231600:intron | 30.0% | |
| !!! | AAAGGTGTTTTTGAGAAGAT+AGG | + | chr2_2:3875775-3875794 | Msa0231600:intron | 30.0% |
| TCTATGATAAAATACCACTG+TGG | - | chr2_2:3876033-3876052 | None:intergenic | 30.0% | |
| CTTATATTATTACAAGTGCC+AGG | + | chr2_2:3876071-3876090 | Msa0231600:intron | 30.0% | |
| GTGATTAGAGGGAAAATATA+GGG | - | chr2_2:3876188-3876207 | None:intergenic | 30.0% | |
| AGTGATTAGAGGGAAAATAT+AGG | - | chr2_2:3876189-3876208 | None:intergenic | 30.0% | |
| AAAACCCAAGTCACTAATTA+AGG | + | chr2_2:3876307-3876326 | Msa0231600:intron | 30.0% | |
| AAACCCAAGTCACTAATTAA+GGG | + | chr2_2:3876308-3876327 | Msa0231600:intron | 30.0% | |
| AATCCCTTAATTAGTGACTT+GGG | - | chr2_2:3876314-3876333 | None:intergenic | 30.0% | |
| ! | CATGGATTTGAATTCTAAAG+TGG | - | chr2_2:3876350-3876369 | None:intergenic | 30.0% |
| TACAACTCTTGAACAACTTT+GGG | - | chr2_2:3876375-3876394 | None:intergenic | 30.0% | |
| ATACAACTCTTGAACAACTT+TGG | - | chr2_2:3876376-3876395 | None:intergenic | 30.0% | |
| GTTCAAGAGTTGTATTGTAA+AGG | + | chr2_2:3876402-3876421 | Msa0231600:intron | 30.0% | |
| TGCAATAGAATCCAAACTTA+GGG | - | chr2_2:3876506-3876525 | None:intergenic | 30.0% | |
| ! | TTTGGATTCTATTGCAGTTT+TGG | + | chr2_2:3876510-3876529 | Msa0231600:intron | 30.0% |
| AAAGAATGGAAGAAAGGAAT+CGG | - | chr2_2:3876734-3876753 | None:intergenic | 30.0% | |
| ATGGATAAAGAATGGAAGAA+AGG | - | chr2_2:3876740-3876759 | None:intergenic | 30.0% | |
| !! | AAAAGCATCAACGCTTTCTT+CGG | - | chr2_2:3871887-3871906 | None:intergenic | 35.0% |
| !! | TTCTGAATTCGATTTGGTGT+CGG | - | chr2_2:3871974-3871993 | None:intergenic | 35.0% |
| !! | CGAATTCTAGTTCAAATGCA+TGG | + | chr2_2:3872037-3872056 | Msa0231600:CDS | 35.0% |
| TTCAGCTTCTGGATCAAATT+TGG | - | chr2_2:3872069-3872088 | None:intergenic | 35.0% | |
| CTGAAAAAGAGGGGTTATAA+TGG | + | chr2_2:3872084-3872103 | Msa0231600:CDS | 35.0% | |
| GATTCTCCAAAGACTCTTAA+TGG | + | chr2_2:3872150-3872169 | Msa0231600:CDS | 35.0% | |
| TCACTTCCATTAAGAGTCTT+TGG | - | chr2_2:3872159-3872178 | None:intergenic | 35.0% | |
| GTATCAACTTCAACACAATG+AGG | - | chr2_2:3872210-3872229 | None:intergenic | 35.0% | |
| ! | GTTTTCACAATTGGGTTTTG+GGG | - | chr2_2:3872280-3872299 | None:intergenic | 35.0% |
| ! | TGTTTTCACAGTTGGGTTTT+GGG | - | chr2_2:3872320-3872339 | None:intergenic | 35.0% |
| ! | ATGTTTTCACAGTTGGGTTT+TGG | - | chr2_2:3872321-3872340 | None:intergenic | 35.0% |
| GTCCTAGAATGATTCAAAAG+GGG | - | chr2_2:3872675-3872694 | None:intergenic | 35.0% | |
| CTAGGACAATAAAAGTAAGG+AGG | + | chr2_2:3872688-3872707 | Msa0231600:CDS | 35.0% | |
| GGGTCTCGATAATAAAGTTA+AGG | + | chr2_2:3872809-3872828 | Msa0231600:CDS | 35.0% | |
| TTCATAATGACAACCATTGG+AGG | - | chr2_2:3872852-3872871 | None:intergenic | 35.0% | |
| TGAGCAGGATGAAAATAACA+AGG | + | chr2_2:3872881-3872900 | Msa0231600:CDS | 35.0% | |
| CTTGATTGCTTCAGTGATTA+CGG | + | chr2_2:3873167-3873186 | Msa0231600:CDS | 35.0% | |
| AAATCAAAACACTCATCCCT+CGG | - | chr2_2:3873232-3873251 | None:intergenic | 35.0% | |
| ! | ATTTTTGAACCATCTGTAGC+AGG | + | chr2_2:3873248-3873267 | Msa0231600:CDS | 35.0% |
| TCTAAATAACCTGCTACAGA+TGG | - | chr2_2:3873260-3873279 | None:intergenic | 35.0% | |
| TACAAGCATTTCAAAGAGCA+AGG | + | chr2_2:3873293-3873312 | Msa0231600:CDS | 35.0% | |
| ! | GTGTCCAATTTTTCATCTTG+TGG | + | chr2_2:3873566-3873585 | Msa0231600:intron | 35.0% |
| TTCATCTTGTGGAAAGATTG+GGG | + | chr2_2:3873577-3873596 | Msa0231600:intron | 35.0% | |
| TCAACAGCTTGACATTTGTA+AGG | + | chr2_2:3873895-3873914 | Msa0231600:CDS | 35.0% | |
| ACATCATCTACAAAACAAGG+AGG | + | chr2_2:3874012-3874031 | Msa0231600:CDS | 35.0% | |
| AGTTGTGCATAAAATTGGTG+AGG | + | chr2_2:3874128-3874147 | Msa0231600:intron | 35.0% | |
| ! | TTTGCTGATTACCCTCAATA+CGG | - | chr2_2:3874161-3874180 | None:intergenic | 35.0% |
| TATTGAGGGTAATCAGCAAA+AGG | + | chr2_2:3874161-3874180 | Msa0231600:intron | 35.0% | |
| GTTTGAGTGTGATCTTTCAT+TGG | + | chr2_2:3874266-3874285 | Msa0231600:intron | 35.0% | |
| AGATGAAAGGGGAATTATAG+TGG | + | chr2_2:3874303-3874322 | Msa0231600:intron | 35.0% | |
| AAGGGGAATTATAGTGGTTA+AGG | + | chr2_2:3874309-3874328 | Msa0231600:intron | 35.0% | |
| AGGGGAATTATAGTGGTTAA+GGG | + | chr2_2:3874310-3874329 | Msa0231600:intron | 35.0% | |
| AATAGCCGTAAATTGGTTGA+AGG | + | chr2_2:3874402-3874421 | Msa0231600:intron | 35.0% | |
| ATAGCCGTAAATTGGTTGAA+GGG | + | chr2_2:3874403-3874422 | Msa0231600:intron | 35.0% | |
| GTGACTCTATTGTAGTAGAA+AGG | + | chr2_2:3874475-3874494 | Msa0231600:intron | 35.0% | |
| TCATAACATCCATACCAGTT+AGG | - | chr2_2:3874570-3874589 | None:intergenic | 35.0% | |
| TCATCAATCAATAGCTGCAA+AGG | + | chr2_2:3874733-3874752 | Msa0231600:CDS | 35.0% | |
| TTTCACAGAAGAATCTCCAT+TGG | - | chr2_2:3874807-3874826 | None:intergenic | 35.0% | |
| AATGCATGGAGAAAAACAGT+TGG | + | chr2_2:3875068-3875087 | Msa0231600:CDS | 35.0% | |
| AACAGCTTTCTTCTTGAGAA+TGG | - | chr2_2:3875185-3875204 | None:intergenic | 35.0% | |
| CCCGTTAACATTTGAAAACA+TGG | + | chr2_2:3875226-3875245 | Msa0231600:intron | 35.0% | |
| TTTGAAAACATGGAGAGAAG+TGG | + | chr2_2:3875236-3875255 | Msa0231600:intron | 35.0% | |
| CAAAATGGGGAACAATACTT+TGG | - | chr2_2:3875322-3875341 | None:intergenic | 35.0% | |
| CGAGGATGATTTCATATTGA+CGG | + | chr2_2:3875743-3875762 | Msa0231600:intron | 35.0% | |
| GATGATTTCATATTGACGGT+AGG | + | chr2_2:3875747-3875766 | Msa0231600:intron | 35.0% | |
| TTTCTTATAATAGTGACCGG+AGG | + | chr2_2:3875991-3876010 | Msa0231600:intron | 35.0% | |
| TTCTTATAATAGTGACCGGA+GGG | + | chr2_2:3875992-3876011 | Msa0231600:intron | 35.0% | |
| GCTTTACAATTAAGGGATGT+GGG | - | chr2_2:3876142-3876161 | None:intergenic | 35.0% | |
| AGCTTTACAATTAAGGGATG+TGG | - | chr2_2:3876143-3876162 | None:intergenic | 35.0% | |
| GTTAATGCAGAGTGATTAGA+GGG | - | chr2_2:3876199-3876218 | None:intergenic | 35.0% | |
| AGTTAATGCAGAGTGATTAG+AGG | - | chr2_2:3876200-3876219 | None:intergenic | 35.0% | |
| GAGGGAATAAAATTAGGGTT+GGG | - | chr2_2:3876230-3876249 | None:intergenic | 35.0% | |
| GAATCCCTTAATTAGTGACT+TGG | - | chr2_2:3876315-3876334 | None:intergenic | 35.0% | |
| ! | TCTAAAGTGGAATGCTGATT+AGG | - | chr2_2:3876337-3876356 | None:intergenic | 35.0% |
| CAATAGAATCCAAACTTAGG+GGG | - | chr2_2:3876504-3876523 | None:intergenic | 35.0% | |
| GCAATAGAATCCAAACTTAG+GGG | - | chr2_2:3876505-3876524 | None:intergenic | 35.0% | |
| CTGCAATAGAATCCAAACTT+AGG | - | chr2_2:3876507-3876526 | None:intergenic | 35.0% | |
| !! | ACCAAGTCAAAAAAGTACCA+GGG | - | chr2_2:3876538-3876557 | None:intergenic | 35.0% |
| !! | ATGGGATGATGGATAAAGAA+TGG | - | chr2_2:3876748-3876767 | None:intergenic | 35.0% |
| CAGAGTTTGAACAAAAGAGT+TGG | - | chr2_2:3876781-3876800 | None:intergenic | 35.0% | |
| ! | CAACTCTTTTGTTCAAACTC+TGG | + | chr2_2:3876779-3876798 | Msa0231600:intron | 35.0% |
| ACCAAATCACAAAGAAGAGA+AGG | + | chr2_2:3876828-3876847 | Msa0231600:CDS | 35.0% | |
| ACCTTCTCTTCTTTGTGATT+TGG | - | chr2_2:3876832-3876851 | None:intergenic | 35.0% | |
| AAAGAAGAGTCTGACGAATT+GGG | + | chr2_2:3876927-3876946 | Msa0231600:CDS | 35.0% | |
| ! | TTTTATTGAGGGTTTCGATG+AGG | + | chr2_2:3876980-3876999 | Msa0231600:CDS | 35.0% |
| TTTATTGAGGGTTTCGATGA+GGG | + | chr2_2:3876981-3877000 | Msa0231600:CDS | 35.0% | |
| GTTGAGGAAAGTGATAACAT+GGG | + | chr2_2:3877017-3877036 | Msa0231600:CDS | 35.0% | |
| TAACATGGGATTTGAAAACG+TGG | + | chr2_2:3877031-3877050 | Msa0231600:CDS | 35.0% | |
| AACATGGGATTTGAAAACGT+GGG | + | chr2_2:3877032-3877051 | Msa0231600:CDS | 35.0% | |
| CTATACACAGTTTCCAGCTT+TGG | - | chr2_2:3871910-3871929 | None:intergenic | 40.0% | |
| GAAACTGTGTATAGAGTGAC+CGG | + | chr2_2:3871916-3871935 | Msa0231600:CDS | 40.0% | |
| CGGCTGATTGAATTTGTAAC+CGG | - | chr2_2:3871938-3871957 | None:intergenic | 40.0% | |
| !! | TCTGAATTCGATTTGGTGTC+GGG | - | chr2_2:3871973-3871992 | None:intergenic | 40.0% |
| AGAACAAACTGGTGAATCCA+AGG | + | chr2_2:3871990-3872009 | Msa0231600:CDS | 40.0% | |
| GCTTCTGGATCAAATTTGGT+TGG | - | chr2_2:3872065-3872084 | None:intergenic | 40.0% | |
| TGATCCAGAAGCTGAAAAAG+AGG | + | chr2_2:3872073-3872092 | Msa0231600:CDS | 40.0% | |
| GATCCAGAAGCTGAAAAAGA+GGG | + | chr2_2:3872074-3872093 | Msa0231600:CDS | 40.0% | |
| ATCCAGAAGCTGAAAAAGAG+GGG | + | chr2_2:3872075-3872094 | Msa0231600:CDS | 40.0% | |
| !! | TTGCTTTTGTTAACCAGTCC+TGG | - | chr2_2:3872111-3872130 | None:intergenic | 40.0% |
| ! | TGGAAGTGAAAACGGAGTTT+TGG | + | chr2_2:3872170-3872189 | Msa0231600:CDS | 40.0% |
| !! | CACAATGAGGTAACTTGTTG+TGG | - | chr2_2:3872197-3872216 | None:intergenic | 40.0% |
| ! | AGTTGATACAGCTCCATCTA+AGG | + | chr2_2:3872221-3872240 | Msa0231600:CDS | 40.0% |
| ACCCAACTGTGAAAACATTG+AGG | + | chr2_2:3872323-3872342 | Msa0231600:CDS | 40.0% | |
| ! | CCCTCAATGTTTTCACAGTT+GGG | - | chr2_2:3872327-3872346 | None:intergenic | 40.0% |
| CCCAACTGTGAAAACATTGA+GGG | + | chr2_2:3872324-3872343 | Msa0231600:CDS | 40.0% | |
| ! | ACCCTCAATGTTTTCACAGT+TGG | - | chr2_2:3872328-3872347 | None:intergenic | 40.0% |
| TGTGAAAACATTGAGGGTGA+AGG | + | chr2_2:3872330-3872349 | Msa0231600:CDS | 40.0% | |
| GCAAGAAGAGTAAGTGGTTT+AGG | + | chr2_2:3872529-3872548 | Msa0231600:CDS | 40.0% | |
| ! | AGCCCCTTTTGAATCATTCT+AGG | + | chr2_2:3872670-3872689 | Msa0231600:CDS | 40.0% |
| !!! | TCGAGCGTTTTCTGAAACTT+TGG | + | chr2_2:3872722-3872741 | Msa0231600:CDS | 40.0% |
| !!! | AGCGTTTTCTGAAACTTTGG+AGG | + | chr2_2:3872725-3872744 | Msa0231600:CDS | 40.0% |
| TGAAATTGTTTGGCCTCCAA+TGG | + | chr2_2:3872836-3872855 | Msa0231600:CDS | 40.0% | |
| TACACATTGCAGCTAGTTGT+TGG | + | chr2_2:3872987-3873006 | Msa0231600:intron | 40.0% | |
| CACTACAATTCAACTCAGTG+AGG | - | chr2_2:3873122-3873141 | None:intergenic | 40.0% | |
| ! | CTCACTGAGTTGAATTGTAG+TGG | + | chr2_2:3873120-3873139 | Msa0231600:intron | 40.0% |
| !! | TGAGTTGAATTGTAGTGGAC+AGG | + | chr2_2:3873125-3873144 | Msa0231600:intron | 40.0% |
| !! | TGAATTGTAGTGGACAGGAA+TGG | + | chr2_2:3873130-3873149 | Msa0231600:intron | 40.0% |
| !! | GAATTGTAGTGGACAGGAAT+GGG | + | chr2_2:3873131-3873150 | Msa0231600:intron | 40.0% |
| !! | AATTGTAGTGGACAGGAATG+GGG | + | chr2_2:3873132-3873151 | Msa0231600:intron | 40.0% |
| CGTAATCACTGAAGCAATCA+AGG | - | chr2_2:3873169-3873188 | None:intergenic | 40.0% | |
| TCAAAGAGCAAGGAAGAGAT+AGG | + | chr2_2:3873303-3873322 | Msa0231600:CDS | 40.0% | |
| CAAAGAGCAAGGAAGAGATA+GGG | + | chr2_2:3873304-3873323 | Msa0231600:CDS | 40.0% | |
| TGTAAGAATCCATTTGTCCC+AGG | + | chr2_2:3873341-3873360 | Msa0231600:CDS | 40.0% | |
| ! | GATGTTTTCAACAAGCACTC+TGG | + | chr2_2:3873410-3873429 | Msa0231600:CDS | 40.0% |
| CTCTCTATTTCACTAAGGGA+TGG | + | chr2_2:3873673-3873692 | Msa0231600:intron | 40.0% | |
| TCATCTACAAAACAAGGAGG+AGG | + | chr2_2:3874015-3874034 | Msa0231600:CDS | 40.0% | |
| TAGCCGTAAATTGGTTGAAG+GGG | + | chr2_2:3874404-3874423 | Msa0231600:intron | 40.0% | |
| !! | TCAATTAGTGGGTTCCTAAC+TGG | + | chr2_2:3874553-3874572 | Msa0231600:intron | 40.0% |
| TTTCACGAAGTCTCAAGACA+AGG | + | chr2_2:3875005-3875024 | Msa0231600:CDS | 40.0% | |
| AGTCTCAAGACAAGGATATG+AGG | + | chr2_2:3875013-3875032 | Msa0231600:CDS | 40.0% | |
| GGTTGAACTTGAGAAGGAAT+TGG | + | chr2_2:3875119-3875138 | Msa0231600:CDS | 40.0% | |
| !! | TTGAAAGTGAGGGTTGATGA+GGG | + | chr2_2:3875287-3875306 | Msa0231600:intron | 40.0% |
| CATAGAATTGGTAAATGGCG+AGG | + | chr2_2:3875725-3875744 | Msa0231600:intron | 40.0% | |
| ATTATTACAAGTGCCAGGTG+AGG | + | chr2_2:3876076-3876095 | Msa0231600:intron | 40.0% | |
| GGAGGGAATAAAATTAGGGT+TGG | - | chr2_2:3876231-3876250 | None:intergenic | 40.0% | |
| ! | CTTGAACAACTTTGGGAACA+TGG | - | chr2_2:3876368-3876387 | None:intergenic | 40.0% |
| !! | CAAGTCAAAAAAGTACCAGG+GGG | - | chr2_2:3876536-3876555 | None:intergenic | 40.0% |
| !! | CCAAGTCAAAAAAGTACCAG+GGG | - | chr2_2:3876537-3876556 | None:intergenic | 40.0% |
| !! | GACCAAGTCAAAAAAGTACC+AGG | - | chr2_2:3876539-3876558 | None:intergenic | 40.0% |
| AGGATGAAAGAGAGAGAAGA+AGG | - | chr2_2:3876704-3876723 | None:intergenic | 40.0% | |
| TGAGGCAAAGAAAGAAGAGA+AGG | + | chr2_2:3876896-3876915 | Msa0231600:CDS | 40.0% | |
| AAAGAAAGAAGAGAAGGTGG+AGG | + | chr2_2:3876902-3876921 | Msa0231600:CDS | 40.0% | |
| GAAAGAAGAGTCTGACGAAT+TGG | + | chr2_2:3876926-3876945 | Msa0231600:CDS | 40.0% | |
| AAGAAGAGTCTGACGAATTG+GGG | + | chr2_2:3876928-3876947 | Msa0231600:CDS | 40.0% | |
| GGTTGAGGAAAGTGATAACA+TGG | + | chr2_2:3877016-3877035 | Msa0231600:CDS | 40.0% | |
| AAGATTGCGAAGAGAACGAA+GGG | + | chr2_2:3877060-3877079 | Msa0231600:CDS | 40.0% | |
| ! | CGTTGATGCTTTTCCAAAGC+TGG | + | chr2_2:3871894-3871913 | Msa0231600:CDS | 45.0% |
| CTAGAATTCGGAGAACACCA+AGG | - | chr2_2:3872027-3872046 | None:intergenic | 45.0% | |
| !!! | AACCCCTCTTTTTCAGCTTC+TGG | - | chr2_2:3872080-3872099 | None:intergenic | 45.0% |
| !! | AAGAGGGGTTATAATGGACC+AGG | + | chr2_2:3872090-3872109 | Msa0231600:CDS | 45.0% |
| !! | GAGAATCGCTTTTCACCTGT+AGG | - | chr2_2:3872137-3872156 | None:intergenic | 45.0% |
| AGCTCCATCTAAGGATTGCA+AGG | + | chr2_2:3872230-3872249 | Msa0231600:CDS | 45.0% | |
| CCATCCTTGCAATCCTTAGA+TGG | - | chr2_2:3872237-3872256 | None:intergenic | 45.0% | |
| CCATCTAAGGATTGCAAGGA+TGG | + | chr2_2:3872234-3872253 | Msa0231600:CDS | 45.0% | |
| GATGGTCAATGCGATGATGA+AGG | + | chr2_2:3872252-3872271 | Msa0231600:CDS | 45.0% | |
| TACTCTTCTTGCTCCCTTCA+TGG | - | chr2_2:3872521-3872540 | None:intergenic | 45.0% | |
| AAGGGAGCAAGAAGAGTAAG+TGG | + | chr2_2:3872523-3872542 | Msa0231600:CDS | 45.0% | |
| AGATCAGTTCACCAGCAACT+CGG | + | chr2_2:3872589-3872608 | Msa0231600:CDS | 45.0% | |
| TGATACCAATCAATAGCCCC+AGG | - | chr2_2:3872642-3872661 | None:intergenic | 45.0% | |
| ! | GGGGCTATTGATTGGTATCA+TGG | + | chr2_2:3872642-3872661 | Msa0231600:CDS | 45.0% |
| GAGAGGAGCTCCATTGATAA+GGG | + | chr2_2:3872761-3872780 | Msa0231600:CDS | 45.0% | |
| AGAGGAGCTCCATTGATAAG+GGG | + | chr2_2:3872762-3872781 | Msa0231600:CDS | 45.0% | |
| TCAGTGAGGTCAAACTACAG+AGG | - | chr2_2:3873108-3873127 | None:intergenic | 45.0% | |
| CAGTGATTACGGTGCATTGA+AGG | + | chr2_2:3873178-3873197 | Msa0231600:CDS | 45.0% | |
| TTGAAGGCTCGACACTCATA+TGG | + | chr2_2:3873194-3873213 | Msa0231600:CDS | 45.0% | |
| GACACTCATATGGTCCACAT+GGG | + | chr2_2:3873204-3873223 | Msa0231600:CDS | 45.0% | |
| AAGGAAGAGATAGGGAAGCT+TGG | + | chr2_2:3873312-3873331 | Msa0231600:CDS | 45.0% | |
| AGGAAGAGATAGGGAAGCTT+GGG | + | chr2_2:3873313-3873332 | Msa0231600:CDS | 45.0% | |
| AAGAATCCATTTGTCCCAGG+CGG | + | chr2_2:3873344-3873363 | Msa0231600:CDS | 45.0% | |
| AAGCCATGTAGCCATAAAGC+TGG | - | chr2_2:3873376-3873395 | None:intergenic | 45.0% | |
| TAGTACGTTCTCGCACAACA+TGG | - | chr2_2:3873988-3874007 | None:intergenic | 45.0% | |
| TGAGGATGCTTTCCGTATTG+AGG | + | chr2_2:3874146-3874165 | Msa0231600:intron | 45.0% | |
| GAGGATGCTTTCCGTATTGA+GGG | + | chr2_2:3874147-3874166 | Msa0231600:intron | 45.0% | |
| AGCCGTAAATTGGTTGAAGG+GGG | + | chr2_2:3874405-3874424 | Msa0231600:intron | 45.0% | |
| TCCCCCCTTCAACCAATTTA+CGG | - | chr2_2:3874410-3874429 | None:intergenic | 45.0% | |
| !! | TAGTGGGTTCCTAACTGGTA+TGG | + | chr2_2:3874558-3874577 | Msa0231600:intron | 45.0% |
| CAAGGATATGAGGCAATTCG+AGG | + | chr2_2:3875023-3875042 | Msa0231600:CDS | 45.0% | |
| ! | AGAGCAGGTTGAACTTGAGA+AGG | + | chr2_2:3875113-3875132 | Msa0231600:CDS | 45.0% |
| !! | GTTGAAAGTGAGGGTTGATG+AGG | + | chr2_2:3875286-3875305 | Msa0231600:intron | 45.0% |
| TTAACTCAGGCTGAATCCTG+AGG | - | chr2_2:3875480-3875499 | None:intergenic | 45.0% | |
| TATTGACGGTAGGCAGCAAA+AGG | + | chr2_2:3875757-3875776 | Msa0231600:intron | 45.0% | |
| CTCTACTTTAACACCTCACC+TGG | - | chr2_2:3876092-3876111 | None:intergenic | 45.0% | |
| ACAAAACAGCCCCCTAAGTT+TGG | + | chr2_2:3876492-3876511 | Msa0231600:intron | 45.0% | |
| !!! | CCCCTGGTACTTTTTTGACT+TGG | + | chr2_2:3876534-3876553 | Msa0231600:intron | 45.0% |
| GCACCAAACATAAGGGGTTT+GGG | - | chr2_2:3876577-3876596 | None:intergenic | 45.0% | |
| GAATGGAAGAAAGGAATCGG+AGG | - | chr2_2:3876731-3876750 | None:intergenic | 45.0% | |
| GGCAAAGAAAGAAGAGAAGG+TGG | + | chr2_2:3876899-3876918 | Msa0231600:CDS | 45.0% | |
| AATTGGGGCTGAAGGGAAAA+AGG | + | chr2_2:3876943-3876962 | Msa0231600:CDS | 45.0% | |
| ATTGGGGCTGAAGGGAAAAA+GGG | + | chr2_2:3876944-3876963 | Msa0231600:CDS | 45.0% | |
| CGATGAGGGAAGATCTGATA+CGG | + | chr2_2:3876995-3877014 | Msa0231600:CDS | 45.0% | |
| GAAGATTGCGAAGAGAACGA+AGG | + | chr2_2:3877059-3877078 | Msa0231600:CDS | 45.0% | |
| AGATTGCGAAGAGAACGAAG+GGG | + | chr2_2:3877061-3877080 | Msa0231600:CDS | 45.0% | |
| ! | TCGGAGAACACCAAGGCATT+GGG | - | chr2_2:3872020-3872039 | None:intergenic | 50.0% |
| TTCGGAGAACACCAAGGCAT+TGG | - | chr2_2:3872021-3872040 | None:intergenic | 50.0% | |
| !! | GGGTTATAATGGACCAGGAC+TGG | + | chr2_2:3872095-3872114 | Msa0231600:CDS | 50.0% |
| !! | GATGACACTGACTCAGACAC+CGG | + | chr2_2:3872486-3872505 | Msa0231600:CDS | 50.0% |
| ACCGGAGAGAAAAGCCATGA+AGG | + | chr2_2:3872504-3872523 | Msa0231600:CDS | 50.0% | |
| ! | CCCTTCATGGCTTTTCTCTC+CGG | - | chr2_2:3872508-3872527 | None:intergenic | 50.0% |
| CCGGAGAGAAAAGCCATGAA+GGG | + | chr2_2:3872505-3872524 | Msa0231600:CDS | 50.0% | |
| GGAGAGGAGCTCCATTGATA+AGG | + | chr2_2:3872760-3872779 | Msa0231600:CDS | 50.0% | |
| GCTTCACCACCCCTTATCAA+TGG | - | chr2_2:3872774-3872793 | None:intergenic | 50.0% | |
| ATAAGGGGTGGTGAAGCCAA+TGG | + | chr2_2:3872777-3872796 | Msa0231600:CDS | 50.0% | |
| !! | TGGTGAAGCCAATGGACTGT+GGG | + | chr2_2:3872785-3872804 | Msa0231600:CDS | 50.0% |
| CGACACTCATATGGTCCACA+TGG | + | chr2_2:3873203-3873222 | Msa0231600:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_2:3873446-3873465 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_2:3873445-3873464 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_2:3873446-3873465 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_2:3873445-3873464 | None:intergenic | 50.0% | |
| ! | TCTTCCGATGTCCCGTTTTG+TGG | + | chr2_2:3874219-3874238 | Msa0231600:intron | 50.0% |
| GCTACCACAAAACGGGACAT+CGG | - | chr2_2:3874226-3874245 | None:intergenic | 50.0% | |
| TCGAGCAGCTACCACAAAAC+GGG | - | chr2_2:3874233-3874252 | None:intergenic | 50.0% | |
| CTCGAGCAGCTACCACAAAA+CGG | - | chr2_2:3874234-3874253 | None:intergenic | 50.0% | |
| GCCGTAAATTGGTTGAAGGG+GGG | + | chr2_2:3874406-3874425 | Msa0231600:intron | 50.0% | |
| GGACAGAGTCACTCTTCTAG+AGG | - | chr2_2:3874504-3874523 | None:intergenic | 50.0% | |
| CAAGAAGCGATGTGTGCCAA+TGG | + | chr2_2:3874788-3874807 | Msa0231600:CDS | 50.0% | |
| !! | TGGCTCTGAAGAAGAAGCAG+TGG | + | chr2_2:3875088-3875107 | Msa0231600:CDS | 50.0% |
| CTTCTAGTACGTACACCCTC+CGG | - | chr2_2:3876010-3876029 | None:intergenic | 50.0% | |
| GTACGTACTAGAAGCCACAG+TGG | + | chr2_2:3876016-3876035 | Msa0231600:intron | 50.0% | |
| GCCCCCTATCTTTCCAAAAC+CGG | + | chr2_2:3876441-3876460 | Msa0231600:intron | 50.0% | |
| !!! | GCCGGTTTTGGAAAGATAGG+GGG | - | chr2_2:3876445-3876464 | None:intergenic | 50.0% |
| !!! | CGCCGGTTTTGGAAAGATAG+GGG | - | chr2_2:3876446-3876465 | None:intergenic | 50.0% |
| !!! | CCGCCGGTTTTGGAAAGATA+GGG | - | chr2_2:3876447-3876466 | None:intergenic | 50.0% |
| CCCTATCTTTCCAAAACCGG+CGG | + | chr2_2:3876444-3876463 | Msa0231600:intron | 50.0% | |
| !!! | ACCGCCGGTTTTGGAAAGAT+AGG | - | chr2_2:3876448-3876467 | None:intergenic | 50.0% |
| !! | TGACTTGGTCAGTGATGACG+TGG | + | chr2_2:3876549-3876568 | Msa0231600:intron | 50.0% |
| GCACCCAAACCCCTTATGTT+TGG | + | chr2_2:3876571-3876590 | Msa0231600:intron | 50.0% | |
| GGCACCAAACATAAGGGGTT+TGG | - | chr2_2:3876578-3876597 | None:intergenic | 50.0% | |
| CACGTGGCACCAAACATAAG+GGG | - | chr2_2:3876583-3876602 | None:intergenic | 50.0% | |
| CCACGTGGCACCAAACATAA+GGG | - | chr2_2:3876584-3876603 | None:intergenic | 50.0% | |
| TCCACGTGGCACCAAACATA+AGG | - | chr2_2:3876585-3876604 | None:intergenic | 50.0% | |
| AGAAAGGAATCGGAGGAGAG+AGG | - | chr2_2:3876724-3876743 | None:intergenic | 50.0% | |
| TCTGACGAATTGGGGCTGAA+GGG | + | chr2_2:3876936-3876955 | Msa0231600:CDS | 50.0% | |
| TTGGGGCTGAAGGGAAAAAG+GGG | + | chr2_2:3876945-3876964 | Msa0231600:CDS | 50.0% | |
| GGGAAGATCTGATACGGTTG+AGG | + | chr2_2:3877001-3877020 | Msa0231600:CDS | 50.0% | |
| GATTGCGAAGAGAACGAAGG+GGG | + | chr2_2:3877062-3877081 | Msa0231600:CDS | 50.0% | |
| ATTGCGAAGAGAACGAAGGG+GGG | + | chr2_2:3877063-3877082 | Msa0231600:CDS | 50.0% | |
| GTGTCGGGTACTTTGCGACT+CGG | - | chr2_2:3871958-3871977 | None:intergenic | 55.0% | |
| !! | CCAAGGCATTGGGATCACCT+TGG | - | chr2_2:3872010-3872029 | None:intergenic | 55.0% |
| CCAAGGTGATCCCAATGCCT+TGG | + | chr2_2:3872007-3872026 | Msa0231600:CDS | 55.0% | |
| TCAGTTCACCAGCAACTCGG+TGG | + | chr2_2:3872592-3872611 | Msa0231600:CDS | 55.0% | |
| ACGGTCCTGGGGCTATTGAT+TGG | + | chr2_2:3872634-3872653 | Msa0231600:CDS | 55.0% | |
| !! | CTTTGGAGGAAGAGTGCTCG+AGG | + | chr2_2:3872739-3872758 | Msa0231600:CDS | 55.0% |
| GGAGCTCCATTGATAAGGGG+TGG | + | chr2_2:3872765-3872784 | Msa0231600:CDS | 55.0% | |
| !! | GTGGTGAAGCCAATGGACTG+TGG | + | chr2_2:3872784-3872803 | Msa0231600:CDS | 55.0% |
| !! | TGAAGCCAATGGACTGTGGG+AGG | + | chr2_2:3872788-3872807 | Msa0231600:CDS | 55.0% |
| !! | GAAGCCAATGGACTGTGGGA+GGG | + | chr2_2:3872789-3872808 | Msa0231600:CDS | 55.0% |
| ! | GCGCCAGCTTTATGGCTACA+TGG | + | chr2_2:3873370-3873389 | Msa0231600:CDS | 55.0% |
| AGAGAGAGAGAGAGAGGGAG+GGG | - | chr2_2:3873507-3873526 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGGGA+GGG | - | chr2_2:3873442-3873461 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+AGG | - | chr2_2:3873443-3873462 | None:intergenic | 55.0% | |
| GAAGAAGCAGTGGCAAGAGC+AGG | + | chr2_2:3875098-3875117 | Msa0231600:CDS | 55.0% | |
| AGTTAAGGGGCAGTAACCGC+CGG | - | chr2_2:3876463-3876482 | None:intergenic | 55.0% | |
| !! | CTATTGCAGTTTTGGCCCCC+TGG | + | chr2_2:3876518-3876537 | Msa0231600:intron | 55.0% |
| !! | CCCTTATGTTTGGTGCCACG+TGG | + | chr2_2:3876581-3876600 | Msa0231600:intron | 55.0% |
| TTCTTTGCCTCAGCAGCTGC+AGG | - | chr2_2:3876888-3876907 | None:intergenic | 55.0% | |
| GTCTGACGAATTGGGGCTGA+AGG | + | chr2_2:3876935-3876954 | Msa0231600:CDS | 55.0% | |
| CACTGCCCAGCATGCCAAGA+CGG | + | chr2_2:3872615-3872634 | Msa0231600:CDS | 60.0% | |
| CAGGACCGTCTTGGCATGCT+GGG | - | chr2_2:3872623-3872642 | None:intergenic | 60.0% | |
| CAGCATGCCAAGACGGTCCT+GGG | + | chr2_2:3872622-3872641 | Msa0231600:CDS | 60.0% | |
| AGCATGCCAAGACGGTCCTG+GGG | + | chr2_2:3872623-3872642 | Msa0231600:CDS | 60.0% | |
| CAATAGCCCCAGGACCGTCT+TGG | - | chr2_2:3872632-3872651 | None:intergenic | 60.0% | |
| !! | GAGGAAGAGTGCTCGAGGAG+AGG | + | chr2_2:3872744-3872763 | Msa0231600:CDS | 60.0% |
| GAGACCCTCCCACAGTCCAT+TGG | - | chr2_2:3872796-3872815 | None:intergenic | 60.0% | |
| ! | TATGGTCCACATGGGCACCG+AGG | + | chr2_2:3873212-3873231 | Msa0231600:CDS | 60.0% |
| !! | ATGGTCCACATGGGCACCGA+GGG | + | chr2_2:3873213-3873232 | Msa0231600:CDS | 60.0% |
| CGCTTTCCGCCTGGGACAAA+TGG | - | chr2_2:3873353-3873372 | None:intergenic | 60.0% | |
| AAAGCTGGCGCTTTCCGCCT+GGG | - | chr2_2:3873361-3873380 | None:intergenic | 60.0% | |
| TAAAGCTGGCGCTTTCCGCC+TGG | - | chr2_2:3873362-3873381 | None:intergenic | 60.0% | |
| !! | GGCGGAAAGCGCCAGCTTTA+TGG | + | chr2_2:3873362-3873381 | Msa0231600:CDS | 60.0% |
| GAGAGAGAGAGAGAGGGAGG+GGG | - | chr2_2:3873506-3873525 | None:intergenic | 60.0% | |
| CCAGGACCGTCTTGGCATGC+TGG | - | chr2_2:3872624-3872643 | None:intergenic | 65.0% | |
| CCAGCATGCCAAGACGGTCC+TGG | + | chr2_2:3872621-3872640 | Msa0231600:CDS | 65.0% | |
| !! | CTCATCCCTCGGTGCCCATG+TGG | - | chr2_2:3873221-3873240 | None:intergenic | 65.0% |
| AGAGAGAGAGGGAGGGGGAG+GGG | - | chr2_2:3873501-3873520 | None:intergenic | 65.0% | |
| GAGAGAGAGAGGGAGGGGGA+GGG | - | chr2_2:3873502-3873521 | None:intergenic | 65.0% | |
| AGAGAGAGAGAGGGAGGGGG+AGG | - | chr2_2:3873503-3873522 | None:intergenic | 65.0% | |
| !!! | GGGGCAGTAACCGCCGGTTT+TGG | - | chr2_2:3876457-3876476 | None:intergenic | 65.0% |
| GTTGCTGCTGCACCTGCGAG+TGG | + | chr2_2:3876852-3876871 | Msa0231600:CDS | 65.0% | |
| TGCTGCTCCTGCAGCTGCTG+AGG | + | chr2_2:3876878-3876897 | Msa0231600:CDS | 65.0% | |
| GGGCAGTGCCACCGAGTTGC+TGG | - | chr2_2:3872603-3872622 | None:intergenic | 70.0% | |
| GAGAGAGAGGGAGGGGGAGG+GGG | - | chr2_2:3873500-3873519 | None:intergenic | 70.0% | |
| GCTGCTGCACCTGCGAGTGG+TGG | + | chr2_2:3876855-3876874 | Msa0231600:CDS | 70.0% | |
| GGAGCAGCACCACCACTCGC+AGG | - | chr2_2:3876867-3876886 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 3871880 | 3877094 | 3871880 | ID=Msa0231600;Name=Msa0231600 |
| chr2_2 | mRNA | 3871880 | 3877094 | 3871880 | ID=Msa0231600-mRNA-1;Parent=Msa0231600;Name=Msa0231600-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.8|0.16|0.83|1|1|6|0|718 |
| chr2_2 | exon | 3871880 | 3872902 | 3871880 | ID=Msa0231600-mRNA-1:exon:1533;Parent=Msa0231600-mRNA-1 |
| chr2_2 | exon | 3873140 | 3873431 | 3873140 | ID=Msa0231600-mRNA-1:exon:1534;Parent=Msa0231600-mRNA-1 |
| chr2_2 | exon | 3873816 | 3874036 | 3873816 | ID=Msa0231600-mRNA-1:exon:1535;Parent=Msa0231600-mRNA-1 |
| chr2_2 | exon | 3874689 | 3874843 | 3874689 | ID=Msa0231600-mRNA-1:exon:1536;Parent=Msa0231600-mRNA-1 |
| chr2_2 | exon | 3874987 | 3875169 | 3874987 | ID=Msa0231600-mRNA-1:exon:1537;Parent=Msa0231600-mRNA-1 |
| chr2_2 | exon | 3876812 | 3877094 | 3876812 | ID=Msa0231600-mRNA-1:exon:1538;Parent=Msa0231600-mRNA-1 |
| chr2_2 | CDS | 3871880 | 3872902 | 3871880 | ID=Msa0231600-mRNA-1:cds;Parent=Msa0231600-mRNA-1 |
| chr2_2 | CDS | 3873140 | 3873431 | 3873140 | ID=Msa0231600-mRNA-1:cds;Parent=Msa0231600-mRNA-1 |
| chr2_2 | CDS | 3873816 | 3874036 | 3873816 | ID=Msa0231600-mRNA-1:cds;Parent=Msa0231600-mRNA-1 |
| chr2_2 | CDS | 3874689 | 3874843 | 3874689 | ID=Msa0231600-mRNA-1:cds;Parent=Msa0231600-mRNA-1 |
| chr2_2 | CDS | 3874987 | 3875169 | 3874987 | ID=Msa0231600-mRNA-1:cds;Parent=Msa0231600-mRNA-1 |
| chr2_2 | CDS | 3876812 | 3877094 | 3876812 | ID=Msa0231600-mRNA-1:cds;Parent=Msa0231600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
