Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309690 | XP_003593089.1 | 88.752 | 649 | 40 | 4 | 1 | 636 | 1 | 629 | 0.0 | 1115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309690 | sp|A5YVF1|SGS3_SOLLC | 50.805 | 435 | 201 | 5 | 209 | 633 | 195 | 626 | 5.79e-139 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189260 | Msa0309690 | 0.824683 | 7.067855e-54 | -8.615850e-47 |
| Msa0231600 | Msa0309690 | 0.905777 | 2.999723e-80 | -8.615850e-47 |
| Msa0270820 | Msa0309690 | 0.862613 | 4.476823e-64 | -8.615850e-47 |
| Msa0309690 | Msa0313900 | 0.800122 | 1.671142e-48 | -8.615850e-47 |
| Msa0309690 | Msa1029870 | 0.824731 | 6.886790e-54 | -8.615850e-47 |
| Msa0309690 | Msa1121050 | 0.815529 | 8.825393e-52 | -8.615850e-47 |
| Msa0309690 | Msa1341840 | 0.801064 | 1.073814e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309690 | MtrunA17_Chr2g0278291 | 88.752 | 649 | 40 | 4 | 1 | 636 | 1 | 629 | 0.0 | 1115 |
| Msa0309690 | MtrunA17_Chr3g0131291 | 50.897 | 446 | 205 | 4 | 199 | 630 | 195 | 640 | 4.01e-151 | 451 |
| Msa0309690 | MtrunA17_Chr3g0131301 | 52.135 | 445 | 199 | 4 | 200 | 630 | 270 | 714 | 1.52e-147 | 444 |
| Msa0309690 | MtrunA17_Chr1g0205401 | 30.625 | 160 | 82 | 6 | 317 | 457 | 315 | 464 | 3.80e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309690 | AT5G23570.1 | 48.268 | 433 | 209 | 5 | 209 | 628 | 190 | 620 | 1.30e-132 | 403 |
| Msa0309690 | AT5G23570.3 | 48.268 | 433 | 209 | 5 | 209 | 628 | 190 | 620 | 1.30e-132 | 403 |
| Msa0309690 | AT5G23570.4 | 53.846 | 312 | 133 | 4 | 211 | 513 | 192 | 501 | 1.11e-116 | 358 |
| Msa0309690 | AT5G23570.2 | 53.846 | 312 | 133 | 4 | 211 | 513 | 192 | 501 | 1.11e-116 | 358 |
Find 141 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTGGAACTAGTCAAAA+TGG | 0.187396 | 2_4:-4325818 | None:intergenic |
| TTCAGCTTCTGGATCAAATT+TGG | 0.188895 | 2_4:-4322507 | None:intergenic |
| TACTCTTCTTGCTCCCTTCA+TGG | 0.190892 | 2_4:-4322959 | None:intergenic |
| GGCGGAAAGCGCCAGCTTTA+TGG | 0.215269 | 2_4:+4323803 | Msa0309690:CDS |
| TCACTTCCATTAAGAGTCTT+TGG | 0.276457 | 2_4:-4322597 | None:intergenic |
| CGCTTTCCGCCTGGGACAAA+TGG | 0.291352 | 2_4:-4323791 | None:intergenic |
| GATTCTCCAAAGACTCTTAA+TGG | 0.295081 | 2_4:+4322591 | Msa0309690:CDS |
| TAAAGCTGGCGCTTTCCGCC+TGG | 0.298968 | 2_4:-4323800 | None:intergenic |
| GCAAGAAGAGTAAGTGGTTT+AGG | 0.299348 | 2_4:+4322970 | Msa0309690:CDS |
| TGGAAGTGAAAACGGAGTTT+TGG | 0.320583 | 2_4:+4322611 | Msa0309690:CDS |
| CCAGCATGCCAAGACGGTCC+TGG | 0.333435 | 2_4:+4323062 | Msa0309690:CDS |
| CTATACACAGTTTCCAGCTT+TGG | 0.336271 | 2_4:-4322348 | None:intergenic |
| CCATCCTTGCAATCCTTAGA+TGG | 0.340828 | 2_4:-4322675 | None:intergenic |
| TTAAGGATCATGAAATTGTT+TGG | 0.345115 | 2_4:+4323267 | Msa0309690:CDS |
| CTTGATTGCTTCAGTGATTA+CGG | 0.365128 | 2_4:+4323608 | Msa0309690:CDS |
| AGTTGATACAGCTCCATCTA+AGG | 0.372872 | 2_4:+4322662 | Msa0309690:CDS |
| GGGCAGTGCCACCGAGTTGC+TGG | 0.377036 | 2_4:-4323041 | None:intergenic |
| CCAGGACCGTCTTGGCATGC+TGG | 0.377905 | 2_4:-4323062 | None:intergenic |
| AACAGCTTTCTTCTTGAGAA+TGG | 0.392186 | 2_4:-4325666 | None:intergenic |
| GGTTGAACTTGAGAAGGAAT+TGG | 0.394812 | 2_4:+4325603 | Msa0309690:CDS |
| CAGCATGCCAAGACGGTCCT+GGG | 0.400226 | 2_4:+4323063 | Msa0309690:CDS |
| GAATTGTAGTGGACAGGAAT+GGG | 0.406577 | 2_4:+4323572 | Msa0309690:intron |
| TCTGAATTCGATTTGGTGTC+GGG | 0.407799 | 2_4:-4322411 | None:intergenic |
| CATGCATTTGAACTAGAATT+CGG | 0.408902 | 2_4:-4322477 | None:intergenic |
| AGGAAGAGACAGGGAAGCTT+GGG | 0.425147 | 2_4:+4323754 | Msa0309690:CDS |
| CAGTGATTACGGTGCATTGA+AGG | 0.427500 | 2_4:+4323619 | Msa0309690:CDS |
| TTCTGAATTCGATTTGGTGT+CGG | 0.427939 | 2_4:-4322412 | None:intergenic |
| GAGAGGAGCTCCATTGATAA+GGG | 0.430174 | 2_4:+4323202 | Msa0309690:CDS |
| CTATTGGAACTAGTCAAAAT+GGG | 0.431934 | 2_4:-4325817 | None:intergenic |
| TGGCTGATTGAATTTGTAAC+CGG | 0.436207 | 2_4:-4322376 | None:intergenic |
| TTCGGAGAACACCAAGGCAT+TGG | 0.440286 | 2_4:-4322459 | None:intergenic |
| GGGGCTATTGATTGGTATCA+TGG | 0.440863 | 2_4:+4323083 | Msa0309690:CDS |
| GAATGATTTGTATTTGATCA+AGG | 0.441882 | 2_4:-4325196 | None:intergenic |
| AAGGAAGAGACAGGGAAGCT+TGG | 0.442034 | 2_4:+4323753 | Msa0309690:CDS |
| AAAAGCATCAACGCTTTCTT+CGG | 0.442560 | 2_4:-4322325 | None:intergenic |
| ATATATACTTGGCTTTCAAA+TGG | 0.443445 | 2_4:+4325867 | Msa0309690:three_prime_UTR |
| GGAGAGGAGCTCCATTGATA+AGG | 0.444345 | 2_4:+4323201 | Msa0309690:CDS |
| AGTTTGTTCTGAATTCGATT+TGG | 0.445545 | 2_4:-4322418 | None:intergenic |
| GCTTCTGGATCAAATTTGGT+TGG | 0.454560 | 2_4:-4322503 | None:intergenic |
| TCAACAGCTTGACATTTGTA+AGG | 0.458482 | 2_4:+4324379 | Msa0309690:CDS |
| CCCGTTAACATTTGAAAACA+TGG | 0.461319 | 2_4:+4325710 | Msa0309690:three_prime_UTR |
| TTGTCCTAGAATGATTCAAA+AGG | 0.466010 | 2_4:-4323115 | None:intergenic |
| CGTAATCACTGAAGCAATCA+AGG | 0.468384 | 2_4:-4323607 | None:intergenic |
| GGGTCTCGATAATAAAGTTA+AGG | 0.469529 | 2_4:+4323250 | Msa0309690:CDS |
| GCTTCACCACCCCTTATCAA+TGG | 0.470736 | 2_4:-4323212 | None:intergenic |
| ACTCTTAATGGAAGTGAAAA+CGG | 0.471327 | 2_4:+4322603 | Msa0309690:CDS |
| AAATCGAATTCAGAACAAAC+TGG | 0.472407 | 2_4:+4322420 | Msa0309690:CDS |
| TCGGAGAACACCAAGGCATT+GGG | 0.474823 | 2_4:-4322458 | None:intergenic |
| CAGGACCGTCTTGGCATGCT+GGG | 0.475050 | 2_4:-4323061 | None:intergenic |
| ACGGTCCTGGGGCTATTGAT+TGG | 0.476688 | 2_4:+4323075 | Msa0309690:CDS |
| AAAGCTGGCGCTTTCCGCCT+GGG | 0.477327 | 2_4:-4323799 | None:intergenic |
| TGTCCTAGAATGATTCAAAA+GGG | 0.479440 | 2_4:-4323114 | None:intergenic |
| TTGAAGGCTCGACACTCATA+TGG | 0.479633 | 2_4:+4323635 | Msa0309690:CDS |
| ATTCTAGGACAATAAAAGTA+AGG | 0.480913 | 2_4:+4323126 | Msa0309690:CDS |
| CCATCTAAGGATTGCAAGGA+TGG | 0.485298 | 2_4:+4322675 | Msa0309690:CDS |
| AATTAGATCATATCAAGAAA+TGG | 0.487848 | 2_4:+4324322 | Msa0309690:CDS |
| TCAAAGAGCAAGGAAGAGAC+AGG | 0.487879 | 2_4:+4323744 | Msa0309690:CDS |
| ACCGGAGAGAAAAGCCATGA+AGG | 0.488739 | 2_4:+4322945 | Msa0309690:CDS |
| CAAAATGGGGAACAATACTT+TGG | 0.501868 | 2_4:-4325803 | None:intergenic |
| TGTGAAAACATTGAGAATGA+AGG | 0.504092 | 2_4:+4322732 | Msa0309690:CDS |
| GTATTCATAATGACAACCAT+TGG | 0.504257 | 2_4:-4323293 | None:intergenic |
| TTTCACAGAAGAATCTCCAT+TGG | 0.506501 | 2_4:-4325288 | None:intergenic |
| AAGATTAAGCACATCAATGA+TGG | 0.509281 | 2_4:+4324353 | Msa0309690:CDS |
| TGAATTGTAGTGGACAGGAA+TGG | 0.510814 | 2_4:+4323571 | Msa0309690:intron |
| TGAGTTGAATTGTAGTGGAC+AGG | 0.515959 | 2_4:+4323566 | Msa0309690:intron |
| TGGTGAAGCCAATGGACTGT+GGG | 0.519314 | 2_4:+4323226 | Msa0309690:CDS |
| GTGTCGGGTACTTTGCGACT+TGG | 0.533536 | 2_4:-4322396 | None:intergenic |
| TCATCAATCAATAGCTGCAA+AGG | 0.534515 | 2_4:+4325217 | Msa0309690:CDS |
| GGGTTATAATGGACCAGGAC+TGG | 0.535110 | 2_4:+4322536 | Msa0309690:CDS |
| CAATAGCCCCAGGACCGTCT+TGG | 0.535212 | 2_4:-4323070 | None:intergenic |
| AGCTCCATCTAAGGATTGCA+AGG | 0.537739 | 2_4:+4322671 | Msa0309690:CDS |
| TCATCATTGATTTCACATTG+AGG | 0.538114 | 2_4:-4322843 | None:intergenic |
| GAAGAAGCAATGGCAAGAGC+AGG | 0.538661 | 2_4:+4325582 | Msa0309690:CDS |
| TGTGAAAACATTGATGATGA+AGG | 0.539155 | 2_4:+4322810 | Msa0309690:CDS |
| AAGGGAGCAAGAAGAGTAAG+TGG | 0.541250 | 2_4:+4322964 | Msa0309690:CDS |
| TATGAATACGAAATATGAGC+AGG | 0.544610 | 2_4:+4323307 | Msa0309690:CDS |
| CAAGAAGCGATGTGTGCCAA+TGG | 0.545772 | 2_4:+4325272 | Msa0309690:CDS |
| TCAACTTTCAAATTAAACTC+AGG | 0.546721 | 2_4:-4325752 | None:intergenic |
| TTCATAATGACAACCATTGG+AGG | 0.548996 | 2_4:-4323290 | None:intergenic |
| GCGCCAGCTTTATGGCTACA+TGG | 0.549024 | 2_4:+4323811 | Msa0309690:CDS |
| CGAATTCTAGTTCAAATGCA+TGG | 0.550899 | 2_4:+4322478 | Msa0309690:CDS |
| TAACAAAAGCAATAACCTAC+AGG | 0.551722 | 2_4:+4322560 | Msa0309690:CDS |
| TAATTTGAAAGTTGAAAGTG+AGG | 0.551731 | 2_4:+4325760 | Msa0309690:three_prime_UTR |
| GTTGAAAGTGAGGGTTGATG+AGG | 0.554497 | 2_4:+4325770 | Msa0309690:three_prime_UTR |
| CCAAGGTGATCCCAATGCCT+TGG | 0.554508 | 2_4:+4322448 | Msa0309690:CDS |
| AAGCCATGTAGCCATAAAGC+TGG | 0.555114 | 2_4:-4323814 | None:intergenic |
| GAGAATCGCATTTCACCTGT+AGG | 0.555624 | 2_4:-4322575 | None:intergenic |
| CACTGCCCAGCATGCCAAGA+CGG | 0.555632 | 2_4:+4323056 | Msa0309690:CDS |
| CAAGGATATGAGGCAATTCG+AGG | 0.558531 | 2_4:+4325507 | Msa0309690:CDS |
| AGAACAAACTGGTGAATCCA+AGG | 0.561590 | 2_4:+4322431 | Msa0309690:CDS |
| CGACACTCATATGGTCCACA+TGG | 0.561709 | 2_4:+4323644 | Msa0309690:CDS |
| GATGGTCAATGCGATGATGA+AGG | 0.562158 | 2_4:+4322693 | Msa0309690:CDS |
| TACAAGCATTTCAAAGAGCA+AGG | 0.562650 | 2_4:+4323734 | Msa0309690:CDS |
| ATGGTCCACATGGGCACCGA+GGG | 0.564785 | 2_4:+4323654 | Msa0309690:CDS |
| TTGAAAGTGAGGGTTGATGA+GGG | 0.564992 | 2_4:+4325771 | Msa0309690:three_prime_UTR |
| GAAACTGTGTATAGAGTGAC+CGG | 0.566329 | 2_4:+4322357 | Msa0309690:CDS |
| CCAAGGCATTGGGATCACCT+TGG | 0.571456 | 2_4:-4322448 | None:intergenic |
| TGTAAGAATCCATTTGTCCC+AGG | 0.572821 | 2_4:+4323782 | Msa0309690:CDS |
| TGAAATTGTTTGGCCTCCAA+TGG | 0.573059 | 2_4:+4323277 | Msa0309690:CDS |
| AGTCTCAAGACAAGGATATG+AGG | 0.576503 | 2_4:+4325497 | Msa0309690:CDS |
| GAGGAAGAGTGCTCGAGGAG+AGG | 0.576937 | 2_4:+4323185 | Msa0309690:CDS |
| GAGACCCTCCCACAGTCCAT+TGG | 0.578085 | 2_4:-4323234 | None:intergenic |
| AATTGTAGTGGACAGGAATG+GGG | 0.578878 | 2_4:+4323573 | Msa0309690:intron |
| CCGGAGAGAAAAGCCATGAA+GGG | 0.589269 | 2_4:+4322946 | Msa0309690:CDS |
| TTTAAATAAACTGACAGTTG+AGG | 0.590653 | 2_4:+4323007 | Msa0309690:CDS |
| GATGACACTGACTCAGACAC+CGG | 0.590929 | 2_4:+4322927 | Msa0309690:CDS |
| TCTAAATAACCTGCTACAGA+TGG | 0.591043 | 2_4:-4323698 | None:intergenic |
| TGAAGCCAATGGACTGTGGG+AGG | 0.591308 | 2_4:+4323229 | Msa0309690:CDS |
| TAGGACAATAAAAGTAAGGA+GGG | 0.593634 | 2_4:+4323130 | Msa0309690:CDS |
| CTAGGACAATAAAAGTAAGG+AGG | 0.593953 | 2_4:+4323129 | Msa0309690:CDS |
| AGAGCAGGTTGAACTTGAGA+AGG | 0.595315 | 2_4:+4325597 | Msa0309690:CDS |
| AAGAGGGGTTATAATGGACC+AGG | 0.596010 | 2_4:+4322531 | Msa0309690:CDS |
| AAATCAAAACACTCATCCCT+CGG | 0.597633 | 2_4:-4323670 | None:intergenic |
| ATAAGGGGTGGTGAAGCCAA+TGG | 0.600802 | 2_4:+4323218 | Msa0309690:CDS |
| TGATACCAATCAATAGCCCC+AGG | 0.609363 | 2_4:-4323080 | None:intergenic |
| GTGGTGAAGCCAATGGACTG+TGG | 0.610915 | 2_4:+4323225 | Msa0309690:CDS |
| TGGCTCTGAAGAAGAAGCAA+TGG | 0.612666 | 2_4:+4325572 | Msa0309690:CDS |
| GAAGCCAATGGACTGTGGGA+GGG | 0.618906 | 2_4:+4323230 | Msa0309690:CDS |
| TTTGAAAACATGGAGAGAAG+TGG | 0.622438 | 2_4:+4325720 | Msa0309690:three_prime_UTR |
| TCATCTACAAAACAAGGAGG+AGG | 0.622985 | 2_4:+4324499 | Msa0309690:CDS |
| AGATCAGTTCACCAGCAACT+CGG | 0.626667 | 2_4:+4323030 | Msa0309690:CDS |
| CAAAGAGCAAGGAAGAGACA+GGG | 0.628390 | 2_4:+4323745 | Msa0309690:CDS |
| CTTTGGAGGAAGAGTGCTCG+AGG | 0.629120 | 2_4:+4323180 | Msa0309690:CDS |
| CTCATCCCTCGGTGCCCATG+TGG | 0.630782 | 2_4:-4323659 | None:intergenic |
| AATTTGAAAGTTGAAAGTGA+GGG | 0.634922 | 2_4:+4325761 | Msa0309690:three_prime_UTR |
| AGCATGCCAAGACGGTCCTG+GGG | 0.639910 | 2_4:+4323064 | Msa0309690:CDS |
| TAGTACGTTCTCGCACAACA+TGG | 0.640572 | 2_4:-4324469 | None:intergenic |
| AGAACATCATCTACAAAACA+AGG | 0.644083 | 2_4:+4324493 | Msa0309690:CDS |
| GTCCTAGAATGATTCAAAAG+GGG | 0.646488 | 2_4:-4323113 | None:intergenic |
| GGAGCTCCATTGATAAGGGG+TGG | 0.652082 | 2_4:+4323206 | Msa0309690:CDS |
| AGAGGAGCTCCATTGATAAG+GGG | 0.656654 | 2_4:+4323203 | Msa0309690:CDS |
| TATTGGAACTAGTCAAAATG+GGG | 0.668339 | 2_4:-4325816 | None:intergenic |
| AAGAATCCATTTGTCCCAGG+CGG | 0.681732 | 2_4:+4323785 | Msa0309690:CDS |
| TTTCACGAAGTCTCAAGACA+AGG | 0.687703 | 2_4:+4325489 | Msa0309690:CDS |
| GTATCAACTTCAACACAATG+AGG | 0.689414 | 2_4:-4322648 | None:intergenic |
| TGAGCAGGATGAAAATAACA+AGG | 0.690724 | 2_4:+4323322 | Msa0309690:CDS |
| GACACTCATATGGTCCACAT+GGG | 0.691158 | 2_4:+4323645 | Msa0309690:CDS |
| TATGGTCCACATGGGCACCG+AGG | 0.701993 | 2_4:+4323653 | Msa0309690:CDS |
| TCAGTTCACCAGCAACTCGG+TGG | 0.721739 | 2_4:+4323033 | Msa0309690:CDS |
| CTAGAATTCGGAGAACACCA+AGG | 0.730614 | 2_4:-4322465 | None:intergenic |
| ACATCATCTACAAAACAAGG+AGG | 0.743357 | 2_4:+4324496 | Msa0309690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATTTTATTGAAAAAAT+AGG | - | chr2_4:4325009-4325028 | None:intergenic | 10.0% |
| !!! | CAATTTTTATTATATATACT+TGG | + | chr2_4:4325856-4325875 | Msa0309690:three_prime_UTR | 10.0% |
| !! | AATTAAAAGAAAATCACAAA+AGG | - | chr2_4:4323510-4323529 | None:intergenic | 15.0% |
| !! | AAATTATACAGAAAATAAGA+AGG | - | chr2_4:4324221-4324240 | None:intergenic | 15.0% |
| !!! | CTTATTTTCTGTATAATTTT+TGG | + | chr2_4:4324222-4324241 | Msa0309690:intron | 15.0% |
| !!! | TGTATATATTCTTTTTTAGA+TGG | + | chr2_4:4325154-4325173 | Msa0309690:intron | 15.0% |
| !! | GCGATTTAAAAACAAATAAA+AGG | - | chr2_4:4323407-4323426 | None:intergenic | 20.0% |
| !! | GGACACATAATATATAAAAA+GGG | - | chr2_4:4324036-4324055 | None:intergenic | 20.0% |
| !! | TGGACACATAATATATAAAA+AGG | - | chr2_4:4324037-4324056 | None:intergenic | 20.0% |
| !!! | TTCTGTATAATTTTTGGAAA+TGG | + | chr2_4:4324228-4324247 | Msa0309690:intron | 20.0% |
| !! | AATTAGATCATATCAAGAAA+TGG | + | chr2_4:4324322-4324341 | Msa0309690:CDS | 20.0% |
| !! | ATTGTTAGTATATAGATGAA+AGG | + | chr2_4:4324774-4324793 | Msa0309690:intron | 20.0% |
| !! | TTGTTAGTATATAGATGAAA+GGG | + | chr2_4:4324775-4324794 | Msa0309690:intron | 20.0% |
| !! | GATAATATCTTAAAAATGCA+TGG | + | chr2_4:4325538-4325557 | Msa0309690:CDS | 20.0% |
| !! | TTCTCAATGTTTTCACAATT+GGG | - | chr2_4:4322729-4322748 | None:intergenic | 25.0% |
| !! | ATTCTCAATGTTTTCACAAT+TGG | - | chr2_4:4322730-4322749 | None:intergenic | 25.0% |
| !! | TCATCAATGTTTTCACAATT+GGG | - | chr2_4:4322807-4322826 | None:intergenic | 25.0% |
| !! | ATCATCAATGTTTTCACAAT+TGG | - | chr2_4:4322808-4322827 | None:intergenic | 25.0% |
| ! | TTTAAATAAACTGACAGTTG+AGG | + | chr2_4:4323007-4323026 | Msa0309690:CDS | 25.0% |
| !!! | ATTCTAGGACAATAAAAGTA+AGG | + | chr2_4:4323126-4323145 | Msa0309690:CDS | 25.0% |
| ! | TTAAGGATCATGAAATTGTT+TGG | + | chr2_4:4323267-4323286 | Msa0309690:CDS | 25.0% |
| ! | GTAGTTTAAGAATTCTTAGA+TGG | + | chr2_4:4324127-4324146 | Msa0309690:intron | 25.0% |
| !!! | AGATGTTCTTATTTGGTTTT+TGG | + | chr2_4:4324184-4324203 | Msa0309690:intron | 25.0% |
| ! | TGATCTATCTATACTTGTTT+AGG | + | chr2_4:4324278-4324297 | Msa0309690:intron | 25.0% |
| ! | ATCTTCATAGACAAATCAAT+GGG | - | chr2_4:4324569-4324588 | None:intergenic | 25.0% |
| ! | AATCTTCATAGACAAATCAA+TGG | - | chr2_4:4324570-4324589 | None:intergenic | 25.0% |
| ! | TAATAAGTTGTGCATAGAAT+TGG | + | chr2_4:4324607-4324626 | Msa0309690:intron | 25.0% |
| ! | TGTTAGTATATAGATGAAAG+GGG | + | chr2_4:4324776-4324795 | Msa0309690:intron | 25.0% |
| ! | AGAGCAATTAATTAGTTAGT+TGG | + | chr2_4:4324821-4324840 | Msa0309690:intron | 25.0% |
| !! | TGTTCATTCTTTTCAATTAG+TGG | + | chr2_4:4325025-4325044 | Msa0309690:intron | 25.0% |
| !! | GTTCATTCTTTTCAATTAGT+GGG | + | chr2_4:4325026-4325045 | Msa0309690:intron | 25.0% |
| !!! | AGTTTTTTAGCATCATCATT+CGG | - | chr2_4:4325119-4325138 | None:intergenic | 25.0% |
| ! | ATATATACAATGATCAGTCA+TGG | - | chr2_4:4325143-4325162 | None:intergenic | 25.0% |
| !! | GAATGATTTGTATTTGATCA+AGG | - | chr2_4:4325199-4325218 | None:intergenic | 25.0% |
| !!! | TTTTGGAATACATAACTAAG+TGG | + | chr2_4:4325387-4325406 | Msa0309690:intron | 25.0% |
| ! | AAGAATTGAATCTTACATAC+TGG | - | chr2_4:4325413-4325432 | None:intergenic | 25.0% |
| ! | TCAATCTTCTTTAAACAGAA+TGG | + | chr2_4:4325453-4325472 | Msa0309690:intron | 25.0% |
| !! | TCCATGTTTTCAAATGTTAA+CGG | - | chr2_4:4325714-4325733 | None:intergenic | 25.0% |
| ! | TCAACTTTCAAATTAAACTC+AGG | - | chr2_4:4325755-4325774 | None:intergenic | 25.0% |
| ! | TAATTTGAAAGTTGAAAGTG+AGG | + | chr2_4:4325760-4325779 | Msa0309690:three_prime_UTR | 25.0% |
| ! | AATTTGAAAGTTGAAAGTGA+GGG | + | chr2_4:4325761-4325780 | Msa0309690:three_prime_UTR | 25.0% |
| ! | TAACCAAAGCTAAAAACTAT+TGG | - | chr2_4:4325836-4325855 | None:intergenic | 25.0% |
| !! | ATATATACTTGGCTTTCAAA+TGG | + | chr2_4:4325867-4325886 | Msa0309690:three_prime_UTR | 25.0% |
| ! | AGTTTGTTCTGAATTCGATT+TGG | - | chr2_4:4322421-4322440 | None:intergenic | 30.0% |
| AAATCGAATTCAGAACAAAC+TGG | + | chr2_4:4322420-4322439 | Msa0309690:CDS | 30.0% | |
| CATGCATTTGAACTAGAATT+CGG | - | chr2_4:4322480-4322499 | None:intergenic | 30.0% | |
| TAACAAAAGCAATAACCTAC+AGG | + | chr2_4:4322560-4322579 | Msa0309690:CDS | 30.0% | |
| ACTCTTAATGGAAGTGAAAA+CGG | + | chr2_4:4322603-4322622 | Msa0309690:CDS | 30.0% | |
| ! | ATGTTTTCACAATTGGGTTT+CGG | - | chr2_4:4322723-4322742 | None:intergenic | 30.0% |
| TGTGAAAACATTGAGAATGA+AGG | + | chr2_4:4322732-4322751 | Msa0309690:CDS | 30.0% | |
| !! | ATGTTTTTACAGTTGGGTTT+CGG | - | chr2_4:4322762-4322781 | None:intergenic | 30.0% |
| ! | TGTTTTCACAATTGGGTTTT+GGG | - | chr2_4:4322800-4322819 | None:intergenic | 30.0% |
| ! | ATGTTTTCACAATTGGGTTT+TGG | - | chr2_4:4322723-4322742 | None:intergenic | 30.0% |
| !! | TGTGAAAACATTGATGATGA+AGG | + | chr2_4:4322810-4322829 | Msa0309690:CDS | 30.0% |
| ! | TGATTTCACATTGAGGTTTT+CGG | - | chr2_4:4322839-4322858 | None:intergenic | 30.0% |
| !! | TCATCATTGATTTCACATTG+AGG | - | chr2_4:4322846-4322865 | None:intergenic | 30.0% |
| TGTCCTAGAATGATTCAAAA+GGG | - | chr2_4:4323117-4323136 | None:intergenic | 30.0% | |
| TTGTCCTAGAATGATTCAAA+AGG | - | chr2_4:4323118-4323137 | None:intergenic | 30.0% | |
| TAGGACAATAAAAGTAAGGA+GGG | + | chr2_4:4323130-4323149 | Msa0309690:CDS | 30.0% | |
| GTATTCATAATGACAACCAT+TGG | - | chr2_4:4323296-4323315 | None:intergenic | 30.0% | |
| TATGAATACGAAATATGAGC+AGG | + | chr2_4:4323307-4323326 | Msa0309690:CDS | 30.0% | |
| AAAAGGACTAAGACTCTTAT+AGG | - | chr2_4:4323493-4323512 | None:intergenic | 30.0% | |
| CTTTCCACAAGATGAAAAAT+TGG | - | chr2_4:4324057-4324076 | None:intergenic | 30.0% | |
| ! | TTTTCATCTTGTGGAAAGAT+TGG | + | chr2_4:4324059-4324078 | Msa0309690:intron | 30.0% |
| TTTCATCTTGTGGAAAGATT+GGG | + | chr2_4:4324060-4324079 | Msa0309690:intron | 30.0% | |
| TACTTCTCTCTATTTCACTA+AGG | + | chr2_4:4324152-4324171 | Msa0309690:intron | 30.0% | |
| ACTTCTCTCTATTTCACTAA+GGG | + | chr2_4:4324153-4324172 | Msa0309690:intron | 30.0% | |
| ! | TGGTGTTAGATGTTCTTATT+TGG | + | chr2_4:4324177-4324196 | Msa0309690:intron | 30.0% |
| AAGATTAAGCACATCAATGA+TGG | + | chr2_4:4324353-4324372 | Msa0309690:CDS | 30.0% | |
| AGAACATCATCTACAAAACA+AGG | + | chr2_4:4324493-4324512 | Msa0309690:CDS | 30.0% | |
| !! | TAGTTGGTTAGTTTGTTATG+TGG | + | chr2_4:4324837-4324856 | Msa0309690:intron | 30.0% |
| !! | CTATTTAAAGACTTGCTGAT+GGG | - | chr2_4:4324871-4324890 | None:intergenic | 30.0% |
| GTCTTTAAATAGCCGTAAAT+TGG | + | chr2_4:4324879-4324898 | Msa0309690:intron | 30.0% | |
| ! | CACAACTTGATTTTCTTTCT+TGG | + | chr2_4:4325077-4325096 | Msa0309690:intron | 30.0% |
| ! | TTGATTTTCTTTCTTGGTTC+TGG | + | chr2_4:4325083-4325102 | Msa0309690:intron | 30.0% |
| ATGCAATCAGTGAACTATAA+GGG | - | chr2_4:4325347-4325366 | None:intergenic | 30.0% | |
| TATGCAATCAGTGAACTATA+AGG | - | chr2_4:4325348-4325367 | None:intergenic | 30.0% | |
| !!! | CACTTTCTTTTTGTCACTTT+TGG | + | chr2_4:4325370-4325389 | Msa0309690:intron | 30.0% |
| ! | CCATGTTTTCAAATGTTAAC+GGG | - | chr2_4:4325713-4325732 | None:intergenic | 30.0% |
| TATTGGAACTAGTCAAAATG+GGG | - | chr2_4:4325819-4325838 | None:intergenic | 30.0% | |
| CTATTGGAACTAGTCAAAAT+GGG | - | chr2_4:4325820-4325839 | None:intergenic | 30.0% | |
| ACTATTGGAACTAGTCAAAA+TGG | - | chr2_4:4325821-4325840 | None:intergenic | 30.0% | |
| !!! | GTTCCAATAGTTTTTAGCTT+TGG | + | chr2_4:4325830-4325849 | Msa0309690:three_prime_UTR | 30.0% |
| !! | AAAAGCATCAACGCTTTCTT+CGG | - | chr2_4:4322328-4322347 | None:intergenic | 35.0% |
| TGGCTGATTGAATTTGTAAC+CGG | - | chr2_4:4322379-4322398 | None:intergenic | 35.0% | |
| !! | TTCTGAATTCGATTTGGTGT+CGG | - | chr2_4:4322415-4322434 | None:intergenic | 35.0% |
| !! | CGAATTCTAGTTCAAATGCA+TGG | + | chr2_4:4322478-4322497 | Msa0309690:CDS | 35.0% |
| TTCAGCTTCTGGATCAAATT+TGG | - | chr2_4:4322510-4322529 | None:intergenic | 35.0% | |
| CTGAAAAAGAGGGGTTATAA+TGG | + | chr2_4:4322525-4322544 | Msa0309690:CDS | 35.0% | |
| GATTCTCCAAAGACTCTTAA+TGG | + | chr2_4:4322591-4322610 | Msa0309690:CDS | 35.0% | |
| TCACTTCCATTAAGAGTCTT+TGG | - | chr2_4:4322600-4322619 | None:intergenic | 35.0% | |
| GTATCAACTTCAACACAATG+AGG | - | chr2_4:4322651-4322670 | None:intergenic | 35.0% | |
| ! | TGTTTTCACAATTGGGTTTC+GGG | - | chr2_4:4322722-4322741 | None:intergenic | 35.0% |
| !! | TGTTTTTACAGTTGGGTTTC+GGG | - | chr2_4:4322761-4322780 | None:intergenic | 35.0% |
| ACCCAACTGTAAAAACATTG+AGG | + | chr2_4:4322764-4322783 | Msa0309690:CDS | 35.0% | |
| !! | CCCTCAATGTTTTTACAGTT+GGG | - | chr2_4:4322768-4322787 | None:intergenic | 35.0% |
| CCCAACTGTAAAAACATTGA+GGG | + | chr2_4:4322765-4322784 | Msa0309690:CDS | 35.0% | |
| !! | ACCCTCAATGTTTTTACAGT+TGG | - | chr2_4:4322769-4322788 | None:intergenic | 35.0% |
| TGTAAAAACATTGAGGGTGA+AGG | + | chr2_4:4322771-4322790 | Msa0309690:CDS | 35.0% | |
| GTCCTAGAATGATTCAAAAG+GGG | - | chr2_4:4323116-4323135 | None:intergenic | 35.0% | |
| CTAGGACAATAAAAGTAAGG+AGG | + | chr2_4:4323129-4323148 | Msa0309690:CDS | 35.0% | |
| GGGTCTCGATAATAAAGTTA+AGG | + | chr2_4:4323250-4323269 | Msa0309690:CDS | 35.0% | |
| TTCATAATGACAACCATTGG+AGG | - | chr2_4:4323293-4323312 | None:intergenic | 35.0% | |
| TGAGCAGGATGAAAATAACA+AGG | + | chr2_4:4323322-4323341 | Msa0309690:CDS | 35.0% | |
| CTTGATTGCTTCAGTGATTA+CGG | + | chr2_4:4323608-4323627 | Msa0309690:CDS | 35.0% | |
| AAATCAAAACACTCATCCCT+CGG | - | chr2_4:4323673-4323692 | None:intergenic | 35.0% | |
| ! | ATTTTTGAACCATCTGTAGC+AGG | + | chr2_4:4323689-4323708 | Msa0309690:CDS | 35.0% |
| TCTAAATAACCTGCTACAGA+TGG | - | chr2_4:4323701-4323720 | None:intergenic | 35.0% | |
| TACAAGCATTTCAAAGAGCA+AGG | + | chr2_4:4323734-4323753 | Msa0309690:CDS | 35.0% | |
| ! | GTGTCCAATTTTTCATCTTG+TGG | + | chr2_4:4324050-4324069 | Msa0309690:intron | 35.0% |
| TTCATCTTGTGGAAAGATTG+GGG | + | chr2_4:4324061-4324080 | Msa0309690:intron | 35.0% | |
| TTTGAAGATGACAACTGCTT+TGG | + | chr2_4:4324105-4324124 | Msa0309690:intron | 35.0% | |
| TCAACAGCTTGACATTTGTA+AGG | + | chr2_4:4324379-4324398 | Msa0309690:CDS | 35.0% | |
| ACATCATCTACAAAACAAGG+AGG | + | chr2_4:4324496-4324515 | Msa0309690:CDS | 35.0% | |
| ! | TTTGCTGATTACCCTCAATA+CGG | - | chr2_4:4324645-4324664 | None:intergenic | 35.0% |
| TATTGAGGGTAATCAGCAAA+AGG | + | chr2_4:4324645-4324664 | Msa0309690:intron | 35.0% | |
| GTTTGAGTGTGATCTTTCAT+TGG | + | chr2_4:4324750-4324769 | Msa0309690:intron | 35.0% | |
| AGATGAAAGGGGAATTATAG+TGG | + | chr2_4:4324787-4324806 | Msa0309690:intron | 35.0% | |
| AAGGGGAATTATAGTGGTTA+AGG | + | chr2_4:4324793-4324812 | Msa0309690:intron | 35.0% | |
| AGGGGAATTATAGTGGTTAA+GGG | + | chr2_4:4324794-4324813 | Msa0309690:intron | 35.0% | |
| !! | GCTATTTAAAGACTTGCTGA+TGG | - | chr2_4:4324872-4324891 | None:intergenic | 35.0% |
| AATAGCCGTAAATTGGTTGA+AGG | + | chr2_4:4324886-4324905 | Msa0309690:intron | 35.0% | |
| ATAGCCGTAAATTGGTTGAA+GGG | + | chr2_4:4324887-4324906 | Msa0309690:intron | 35.0% | |
| GTGACTCTATTGTAGTAGAA+AGG | + | chr2_4:4324959-4324978 | Msa0309690:intron | 35.0% | |
| TCATAACATCCATACCAGTT+AGG | - | chr2_4:4325054-4325073 | None:intergenic | 35.0% | |
| TCATCAATCAATAGCTGCAA+AGG | + | chr2_4:4325217-4325236 | Msa0309690:CDS | 35.0% | |
| TTTCACAGAAGAATCTCCAT+TGG | - | chr2_4:4325291-4325310 | None:intergenic | 35.0% | |
| AATGCATGGAGAAAAACAGT+TGG | + | chr2_4:4325552-4325571 | Msa0309690:CDS | 35.0% | |
| AACAGCTTTCTTCTTGAGAA+TGG | - | chr2_4:4325669-4325688 | None:intergenic | 35.0% | |
| CCCGTTAACATTTGAAAACA+TGG | + | chr2_4:4325710-4325729 | Msa0309690:three_prime_UTR | 35.0% | |
| TTTGAAAACATGGAGAGAAG+TGG | + | chr2_4:4325720-4325739 | Msa0309690:three_prime_UTR | 35.0% | |
| CAAAATGGGGAACAATACTT+TGG | - | chr2_4:4325806-4325825 | None:intergenic | 35.0% | |
| CTATACACAGTTTCCAGCTT+TGG | - | chr2_4:4322351-4322370 | None:intergenic | 40.0% | |
| GAAACTGTGTATAGAGTGAC+CGG | + | chr2_4:4322357-4322376 | Msa0309690:CDS | 40.0% | |
| !! | TCTGAATTCGATTTGGTGTC+GGG | - | chr2_4:4322414-4322433 | None:intergenic | 40.0% |
| AGAACAAACTGGTGAATCCA+AGG | + | chr2_4:4322431-4322450 | Msa0309690:CDS | 40.0% | |
| GCTTCTGGATCAAATTTGGT+TGG | - | chr2_4:4322506-4322525 | None:intergenic | 40.0% | |
| TGATCCAGAAGCTGAAAAAG+AGG | + | chr2_4:4322514-4322533 | Msa0309690:CDS | 40.0% | |
| GATCCAGAAGCTGAAAAAGA+GGG | + | chr2_4:4322515-4322534 | Msa0309690:CDS | 40.0% | |
| ATCCAGAAGCTGAAAAAGAG+GGG | + | chr2_4:4322516-4322535 | Msa0309690:CDS | 40.0% | |
| !! | TTGCTTTTGTTAACCAGTCC+TGG | - | chr2_4:4322552-4322571 | None:intergenic | 40.0% |
| ! | TGGAAGTGAAAACGGAGTTT+TGG | + | chr2_4:4322611-4322630 | Msa0309690:CDS | 40.0% |
| ! | AGTTGATACAGCTCCATCTA+AGG | + | chr2_4:4322662-4322681 | Msa0309690:CDS | 40.0% |
| ! | GTTTTCACAATTGGGTTTCG+GGG | - | chr2_4:4322721-4322740 | None:intergenic | 40.0% |
| GCAAGAAGAGTAAGTGGTTT+AGG | + | chr2_4:4322970-4322989 | Msa0309690:CDS | 40.0% | |
| ! | AGCCCCTTTTGAATCATTCT+AGG | + | chr2_4:4323111-4323130 | Msa0309690:CDS | 40.0% |
| !!! | TCGAGCGTTTTCTGAAACTT+TGG | + | chr2_4:4323163-4323182 | Msa0309690:CDS | 40.0% |
| !!! | AGCGTTTTCTGAAACTTTGG+AGG | + | chr2_4:4323166-4323185 | Msa0309690:CDS | 40.0% |
| TGAAATTGTTTGGCCTCCAA+TGG | + | chr2_4:4323277-4323296 | Msa0309690:CDS | 40.0% | |
| TACACATTGCAGCTAGTTGT+TGG | + | chr2_4:4323428-4323447 | Msa0309690:intron | 40.0% | |
| TCAGTGAGGTTAAACTACAG+AGG | - | chr2_4:4323549-4323568 | None:intergenic | 40.0% | |
| CACTACAATTCAACTCAGTG+AGG | - | chr2_4:4323563-4323582 | None:intergenic | 40.0% | |
| ! | CTCACTGAGTTGAATTGTAG+TGG | + | chr2_4:4323561-4323580 | Msa0309690:intron | 40.0% |
| !! | TGAGTTGAATTGTAGTGGAC+AGG | + | chr2_4:4323566-4323585 | Msa0309690:intron | 40.0% |
| !! | TGAATTGTAGTGGACAGGAA+TGG | + | chr2_4:4323571-4323590 | Msa0309690:intron | 40.0% |
| !! | GAATTGTAGTGGACAGGAAT+GGG | + | chr2_4:4323572-4323591 | Msa0309690:intron | 40.0% |
| !! | AATTGTAGTGGACAGGAATG+GGG | + | chr2_4:4323573-4323592 | Msa0309690:intron | 40.0% |
| CGTAATCACTGAAGCAATCA+AGG | - | chr2_4:4323610-4323629 | None:intergenic | 40.0% | |
| TGTAAGAATCCATTTGTCCC+AGG | + | chr2_4:4323782-4323801 | Msa0309690:CDS | 40.0% | |
| ! | GATGTTTTCAACAAGCACTC+TGG | + | chr2_4:4323851-4323870 | Msa0309690:CDS | 40.0% |
| CTCTCTATTTCACTAAGGGA+TGG | + | chr2_4:4324157-4324176 | Msa0309690:intron | 40.0% | |
| TCATCTACAAAACAAGGAGG+AGG | + | chr2_4:4324499-4324518 | Msa0309690:CDS | 40.0% | |
| AGTTGTGCATAGAATTGGTG+AGG | + | chr2_4:4324612-4324631 | Msa0309690:intron | 40.0% | |
| TAGCCGTAAATTGGTTGAAG+GGG | + | chr2_4:4324888-4324907 | Msa0309690:intron | 40.0% | |
| !! | TCAATTAGTGGGTTCCTAAC+TGG | + | chr2_4:4325037-4325056 | Msa0309690:intron | 40.0% |
| TTTCACGAAGTCTCAAGACA+AGG | + | chr2_4:4325489-4325508 | Msa0309690:CDS | 40.0% | |
| AGTCTCAAGACAAGGATATG+AGG | + | chr2_4:4325497-4325516 | Msa0309690:CDS | 40.0% | |
| GGTTGAACTTGAGAAGGAAT+TGG | + | chr2_4:4325603-4325622 | Msa0309690:CDS | 40.0% | |
| !! | TTGAAAGTGAGGGTTGATGA+GGG | + | chr2_4:4325771-4325790 | Msa0309690:three_prime_UTR | 40.0% |
| ! | CGTTGATGCTTTTCCAAAGC+TGG | + | chr2_4:4322335-4322354 | Msa0309690:CDS | 45.0% |
| CTAGAATTCGGAGAACACCA+AGG | - | chr2_4:4322468-4322487 | None:intergenic | 45.0% | |
| !!! | AACCCCTCTTTTTCAGCTTC+TGG | - | chr2_4:4322521-4322540 | None:intergenic | 45.0% |
| !! | AAGAGGGGTTATAATGGACC+AGG | + | chr2_4:4322531-4322550 | Msa0309690:CDS | 45.0% |
| GAGAATCGCATTTCACCTGT+AGG | - | chr2_4:4322578-4322597 | None:intergenic | 45.0% | |
| AGCTCCATCTAAGGATTGCA+AGG | + | chr2_4:4322671-4322690 | Msa0309690:CDS | 45.0% | |
| CCATCCTTGCAATCCTTAGA+TGG | - | chr2_4:4322678-4322697 | None:intergenic | 45.0% | |
| CCATCTAAGGATTGCAAGGA+TGG | + | chr2_4:4322675-4322694 | Msa0309690:CDS | 45.0% | |
| GATGGTCAATGCGATGATGA+AGG | + | chr2_4:4322693-4322712 | Msa0309690:CDS | 45.0% | |
| TACTCTTCTTGCTCCCTTCA+TGG | - | chr2_4:4322962-4322981 | None:intergenic | 45.0% | |
| AAGGGAGCAAGAAGAGTAAG+TGG | + | chr2_4:4322964-4322983 | Msa0309690:CDS | 45.0% | |
| AGATCAGTTCACCAGCAACT+CGG | + | chr2_4:4323030-4323049 | Msa0309690:CDS | 45.0% | |
| TGATACCAATCAATAGCCCC+AGG | - | chr2_4:4323083-4323102 | None:intergenic | 45.0% | |
| ! | GGGGCTATTGATTGGTATCA+TGG | + | chr2_4:4323083-4323102 | Msa0309690:CDS | 45.0% |
| GAGAGGAGCTCCATTGATAA+GGG | + | chr2_4:4323202-4323221 | Msa0309690:CDS | 45.0% | |
| AGAGGAGCTCCATTGATAAG+GGG | + | chr2_4:4323203-4323222 | Msa0309690:CDS | 45.0% | |
| CAGTGATTACGGTGCATTGA+AGG | + | chr2_4:4323619-4323638 | Msa0309690:CDS | 45.0% | |
| TTGAAGGCTCGACACTCATA+TGG | + | chr2_4:4323635-4323654 | Msa0309690:CDS | 45.0% | |
| GACACTCATATGGTCCACAT+GGG | + | chr2_4:4323645-4323664 | Msa0309690:CDS | 45.0% | |
| TCAAAGAGCAAGGAAGAGAC+AGG | + | chr2_4:4323744-4323763 | Msa0309690:CDS | 45.0% | |
| CAAAGAGCAAGGAAGAGACA+GGG | + | chr2_4:4323745-4323764 | Msa0309690:CDS | 45.0% | |
| AAGAATCCATTTGTCCCAGG+CGG | + | chr2_4:4323785-4323804 | Msa0309690:CDS | 45.0% | |
| AAGCCATGTAGCCATAAAGC+TGG | - | chr2_4:4323817-4323836 | None:intergenic | 45.0% | |
| TAGTACGTTCTCGCACAACA+TGG | - | chr2_4:4324472-4324491 | None:intergenic | 45.0% | |
| TGAGGATGCTTTCCGTATTG+AGG | + | chr2_4:4324630-4324649 | Msa0309690:intron | 45.0% | |
| GAGGATGCTTTCCGTATTGA+GGG | + | chr2_4:4324631-4324650 | Msa0309690:intron | 45.0% | |
| AGCCGTAAATTGGTTGAAGG+GGG | + | chr2_4:4324889-4324908 | Msa0309690:intron | 45.0% | |
| TCCCCCCTTCAACCAATTTA+CGG | - | chr2_4:4324894-4324913 | None:intergenic | 45.0% | |
| AGGACAGAGTCACTCTTCTA+GGG | - | chr2_4:4324989-4325008 | None:intergenic | 45.0% | |
| TAGGACAGAGTCACTCTTCT+AGG | - | chr2_4:4324990-4325009 | None:intergenic | 45.0% | |
| !! | TAGTGGGTTCCTAACTGGTA+TGG | + | chr2_4:4325042-4325061 | Msa0309690:intron | 45.0% |
| CAAGGATATGAGGCAATTCG+AGG | + | chr2_4:4325507-4325526 | Msa0309690:CDS | 45.0% | |
| !! | TGGCTCTGAAGAAGAAGCAA+TGG | + | chr2_4:4325572-4325591 | Msa0309690:CDS | 45.0% |
| ! | AGAGCAGGTTGAACTTGAGA+AGG | + | chr2_4:4325597-4325616 | Msa0309690:CDS | 45.0% |
| !! | GTTGAAAGTGAGGGTTGATG+AGG | + | chr2_4:4325770-4325789 | Msa0309690:three_prime_UTR | 45.0% |
| ! | TCGGAGAACACCAAGGCATT+GGG | - | chr2_4:4322461-4322480 | None:intergenic | 50.0% |
| TTCGGAGAACACCAAGGCAT+TGG | - | chr2_4:4322462-4322481 | None:intergenic | 50.0% | |
| !! | GGGTTATAATGGACCAGGAC+TGG | + | chr2_4:4322536-4322555 | Msa0309690:CDS | 50.0% |
| !! | GATGACACTGACTCAGACAC+CGG | + | chr2_4:4322927-4322946 | Msa0309690:CDS | 50.0% |
| ACCGGAGAGAAAAGCCATGA+AGG | + | chr2_4:4322945-4322964 | Msa0309690:CDS | 50.0% | |
| ! | CCCTTCATGGCTTTTCTCTC+CGG | - | chr2_4:4322949-4322968 | None:intergenic | 50.0% |
| CCGGAGAGAAAAGCCATGAA+GGG | + | chr2_4:4322946-4322965 | Msa0309690:CDS | 50.0% | |
| GGAGAGGAGCTCCATTGATA+AGG | + | chr2_4:4323201-4323220 | Msa0309690:CDS | 50.0% | |
| GCTTCACCACCCCTTATCAA+TGG | - | chr2_4:4323215-4323234 | None:intergenic | 50.0% | |
| ATAAGGGGTGGTGAAGCCAA+TGG | + | chr2_4:4323218-4323237 | Msa0309690:CDS | 50.0% | |
| !! | TGGTGAAGCCAATGGACTGT+GGG | + | chr2_4:4323226-4323245 | Msa0309690:CDS | 50.0% |
| CGACACTCATATGGTCCACA+TGG | + | chr2_4:4323644-4323663 | Msa0309690:CDS | 50.0% | |
| AAGGAAGAGACAGGGAAGCT+TGG | + | chr2_4:4323753-4323772 | Msa0309690:CDS | 50.0% | |
| AGGAAGAGACAGGGAAGCTT+GGG | + | chr2_4:4323754-4323773 | Msa0309690:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_4:4323897-4323916 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_4:4323896-4323915 | None:intergenic | 50.0% | |
| ! | TCTTCCGATGTCCCGTTTTG+TGG | + | chr2_4:4324703-4324722 | Msa0309690:intron | 50.0% |
| GCTACCACAAAACGGGACAT+CGG | - | chr2_4:4324710-4324729 | None:intergenic | 50.0% | |
| TCGAGCAGCTACCACAAAAC+GGG | - | chr2_4:4324717-4324736 | None:intergenic | 50.0% | |
| CTCGAGCAGCTACCACAAAA+CGG | - | chr2_4:4324718-4324737 | None:intergenic | 50.0% | |
| GCCGTAAATTGGTTGAAGGG+GGG | + | chr2_4:4324890-4324909 | Msa0309690:intron | 50.0% | |
| GGACAGAGTCACTCTTCTAG+GGG | - | chr2_4:4324988-4325007 | None:intergenic | 50.0% | |
| CAAGAAGCGATGTGTGCCAA+TGG | + | chr2_4:4325272-4325291 | Msa0309690:CDS | 50.0% | |
| GAAGAAGCAATGGCAAGAGC+AGG | + | chr2_4:4325582-4325601 | Msa0309690:CDS | 50.0% | |
| GTGTCGGGTACTTTGCGACT+TGG | - | chr2_4:4322399-4322418 | None:intergenic | 55.0% | |
| !! | CCAAGGCATTGGGATCACCT+TGG | - | chr2_4:4322451-4322470 | None:intergenic | 55.0% |
| CCAAGGTGATCCCAATGCCT+TGG | + | chr2_4:4322448-4322467 | Msa0309690:CDS | 55.0% | |
| TCAGTTCACCAGCAACTCGG+TGG | + | chr2_4:4323033-4323052 | Msa0309690:CDS | 55.0% | |
| ACGGTCCTGGGGCTATTGAT+TGG | + | chr2_4:4323075-4323094 | Msa0309690:CDS | 55.0% | |
| !! | CTTTGGAGGAAGAGTGCTCG+AGG | + | chr2_4:4323180-4323199 | Msa0309690:CDS | 55.0% |
| GGAGCTCCATTGATAAGGGG+TGG | + | chr2_4:4323206-4323225 | Msa0309690:CDS | 55.0% | |
| !! | GTGGTGAAGCCAATGGACTG+TGG | + | chr2_4:4323225-4323244 | Msa0309690:CDS | 55.0% |
| !! | TGAAGCCAATGGACTGTGGG+AGG | + | chr2_4:4323229-4323248 | Msa0309690:CDS | 55.0% |
| !! | GAAGCCAATGGACTGTGGGA+GGG | + | chr2_4:4323230-4323249 | Msa0309690:CDS | 55.0% |
| ! | GCGCCAGCTTTATGGCTACA+TGG | + | chr2_4:4323811-4323830 | Msa0309690:CDS | 55.0% |
| GAGAGAGAGAGGGAGAGAGA+GGG | - | chr2_4:4323887-4323906 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGGGAGAGAG+AGG | - | chr2_4:4323888-4323907 | None:intergenic | 55.0% | |
| CACTGCCCAGCATGCCAAGA+CGG | + | chr2_4:4323056-4323075 | Msa0309690:CDS | 60.0% | |
| CAGGACCGTCTTGGCATGCT+GGG | - | chr2_4:4323064-4323083 | None:intergenic | 60.0% | |
| CAGCATGCCAAGACGGTCCT+GGG | + | chr2_4:4323063-4323082 | Msa0309690:CDS | 60.0% | |
| AGCATGCCAAGACGGTCCTG+GGG | + | chr2_4:4323064-4323083 | Msa0309690:CDS | 60.0% | |
| CAATAGCCCCAGGACCGTCT+TGG | - | chr2_4:4323073-4323092 | None:intergenic | 60.0% | |
| !! | GAGGAAGAGTGCTCGAGGAG+AGG | + | chr2_4:4323185-4323204 | Msa0309690:CDS | 60.0% |
| GAGACCCTCCCACAGTCCAT+TGG | - | chr2_4:4323237-4323256 | None:intergenic | 60.0% | |
| ! | TATGGTCCACATGGGCACCG+AGG | + | chr2_4:4323653-4323672 | Msa0309690:CDS | 60.0% |
| !! | ATGGTCCACATGGGCACCGA+GGG | + | chr2_4:4323654-4323673 | Msa0309690:CDS | 60.0% |
| CGCTTTCCGCCTGGGACAAA+TGG | - | chr2_4:4323794-4323813 | None:intergenic | 60.0% | |
| AAAGCTGGCGCTTTCCGCCT+GGG | - | chr2_4:4323802-4323821 | None:intergenic | 60.0% | |
| TAAAGCTGGCGCTTTCCGCC+TGG | - | chr2_4:4323803-4323822 | None:intergenic | 60.0% | |
| !! | GGCGGAAAGCGCCAGCTTTA+TGG | + | chr2_4:4323803-4323822 | Msa0309690:CDS | 60.0% |
| CCAGGACCGTCTTGGCATGC+TGG | - | chr2_4:4323065-4323084 | None:intergenic | 65.0% | |
| CCAGCATGCCAAGACGGTCC+TGG | + | chr2_4:4323062-4323081 | Msa0309690:CDS | 65.0% | |
| !! | CTCATCCCTCGGTGCCCATG+TGG | - | chr2_4:4323662-4323681 | None:intergenic | 65.0% |
| GGGCAGTGCCACCGAGTTGC+TGG | - | chr2_4:4323044-4323063 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 4322321 | 4325958 | 4322321 | ID=Msa0309690;Name=Msa0309690 |
| chr2_4 | mRNA | 4322321 | 4325958 | 4322321 | ID=Msa0309690-mRNA-1;Parent=Msa0309690;Name=Msa0309690-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.4|1|1|1|5|268|636 |
| chr2_4 | exon | 4322321 | 4323343 | 4322321 | ID=Msa0309690-mRNA-1:exon:1479;Parent=Msa0309690-mRNA-1 |
| chr2_4 | exon | 4323581 | 4323872 | 4323581 | ID=Msa0309690-mRNA-1:exon:1480;Parent=Msa0309690-mRNA-1 |
| chr2_4 | exon | 4324300 | 4324520 | 4324300 | ID=Msa0309690-mRNA-1:exon:1481;Parent=Msa0309690-mRNA-1 |
| chr2_4 | exon | 4325173 | 4325327 | 4325173 | ID=Msa0309690-mRNA-1:exon:1482;Parent=Msa0309690-mRNA-1 |
| chr2_4 | exon | 4325471 | 4325958 | 4325471 | ID=Msa0309690-mRNA-1:exon:1483;Parent=Msa0309690-mRNA-1 |
| chr2_4 | CDS | 4322321 | 4323343 | 4322321 | ID=Msa0309690-mRNA-1:cds;Parent=Msa0309690-mRNA-1 |
| chr2_4 | CDS | 4323581 | 4323872 | 4323581 | ID=Msa0309690-mRNA-1:cds;Parent=Msa0309690-mRNA-1 |
| chr2_4 | CDS | 4324300 | 4324520 | 4324300 | ID=Msa0309690-mRNA-1:cds;Parent=Msa0309690-mRNA-1 |
| chr2_4 | CDS | 4325173 | 4325327 | 4325173 | ID=Msa0309690-mRNA-1:cds;Parent=Msa0309690-mRNA-1 |
| chr2_4 | CDS | 4325471 | 4325690 | 4325471 | ID=Msa0309690-mRNA-1:cds;Parent=Msa0309690-mRNA-1 |
| chr2_4 | three_prime_UTR | 4325691 | 4325958 | 4325691 | ID=Msa0309690-mRNA-1:three_prime_utr;Parent=Msa0309690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
