AlfalfaGEDB | Msa0191230

M. sativa cultivar zhongmu-4 / Msa0191230

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0094630	Msa0191230	0.827871	1.231371e-54	-8.615850e-47
Msa0191230	Msa0311940	0.838889	2.199010e-57	-8.615850e-47
Msa0191230	Msa0829520	0.837319	5.575296e-57	-8.615850e-47
Msa0191230	Msa1347310	0.812926	3.316108e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 54 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATGGAGAGAGAAAA+AGG	0.360858	2_1:-6784714	None:intergenic
AAAGCTTTGACAACAGTATG+GGG	0.642690	2_1:+6785005	Msa0191230:CDS
AACCACTCTTTGACAACTTT+TGG	0.177547	2_1:+6784645	Msa0191230:five_prime_UTR
AACTCAGTATGGTAGACTCA+AGG	0.615491	2_1:+6785235	Msa0191230:CDS
AACTTATCTCTAGTAGTTTG+CGG	0.403782	2_1:+6785498	Msa0191230:three_prime_UTR
AAGAGTGCGTATGAGAAGGG+CGG	0.697112	2_1:+6785080	Msa0191230:CDS
AATAACTAGCTGGACGTTGT+GGG	0.528802	2_1:-6785340	None:intergenic
ACAACAACGATTGGCACGCG+TGG	0.595849	2_1:-6785294	None:intergenic
ACATAAATTACAATACTAAT+AGG	0.269901	2_1:-6785538	None:intergenic
ACATTAATTATACATAATTA+GGG	0.355027	2_1:-6785582	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAATGGAGAGAGAAAA+AGG	-	chr2_1:6784717-6784736	None:intergenic	30.0%
TCAACAAAGTTGTCATCAAA+TGG	+	chr2_1:6784768-6784787	Msa0191230:five_prime_UTR	30.0%
CGATAATATGTCCAATGAAA+AGG	+	chr2_1:6784899-6784918	Msa0191230:CDS	30.0%
TTCAAAACATGAATCAGACT+TGG	+	chr2_1:6785037-6785056	Msa0191230:CDS	30.0%
CTTACATCTCACTAAAATCA+CGG	-	chr2_1:6785106-6785125	None:intergenic	30.0%
AGGGTCACTGAAAATATAAT+AGG	-	chr2_1:6785186-6785205	None:intergenic	30.0%
TATTATACTCCAGCTGATTA+TGG	+	chr2_1:6785359-6785378	Msa0191230:CDS	30.0%
AACTTATCTCTAGTAGTTTG+CGG	+	chr2_1:6785498-6785517	Msa0191230:three_prime_UTR	30.0%
AAAACAATGGAGAGAGAAAA+AGG	-	chr2_1:6784717-6784736	None:intergenic	30.0%
TCAACAAAGTTGTCATCAAA+TGG	+	chr2_1:6784768-6784787	Msa0191230:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	6784462	6785609	6784462	ID=Msa0191230;Name=Msa0191230
chr2_1	mRNA	6784462	6785609	6784462	ID=Msa0191230-mRNA-1;Parent=Msa0191230;Name=Msa0191230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=432\|1\|1\|1\|1\|1\|2\|209\|142
chr2_1	exon	6784462	6785120	6784462	ID=Msa0191230-mRNA-1:exon:3076;Parent=Msa0191230-mRNA-1
chr2_1	exon	6785199	6785609	6785199	ID=Msa0191230-mRNA-1:exon:3077;Parent=Msa0191230-mRNA-1
chr2_1	five_prime_UTR	6784462	6784893	6784462	ID=Msa0191230-mRNA-1:five_prime_utr;Parent=Msa0191230-mRNA-1
chr2_1	CDS	6784894	6785120	6784894	ID=Msa0191230-mRNA-1:cds;Parent=Msa0191230-mRNA-1
chr2_1	CDS	6785199	6785400	6785199	ID=Msa0191230-mRNA-1:cds;Parent=Msa0191230-mRNA-1
chr2_1	three_prime_UTR	6785401	6785609	6785401	ID=Msa0191230-mRNA-1:three_prime_utr;Parent=Msa0191230-mRNA-1

Gene Sequence

>Msa0191230

ATGATCGATAATATGTCCAATGAAAAGGCTCGTCATATTTTTAATCTTGATCTTGATCTTGATAATGACGTGGGTTTTCATTTTGTAAAAAAATGTTACAAGAAGATTATCAAAGCTTTGACAACAGTATGGGGTGCTCATATTTCAAAACATGAATCAGACTTGGATACACACCTTGAAAATGTTAAGAGTGCGTATGAGAAGGGCGGCCGTGATTTTAGTGAGATTGACCCTGGTGATATCATGTTCGAGGACTACCTTCCAACTCAGTATGGTAGACTCAAGGCCTATGAAGACCGATTTGAGTACTGGGATCGCTTGACCACGCGTGCCAATCGTTGTTGTGCGCCTAGGGTGCAGCCTCTTGGCCCACAACGTCCAGCTAGTTATTATACTCCAGCTGATTATGGATTAGAGGATGATGATTGA

Protein sequence

>Msa0191230

MIDNMSNEKARHIFNLDLDLDNDVGFHFVKKCYKKIIKALTTVWGAHISKHESDLDTHLENVKSAYEKGGRDFSEIDPGDIMFEDYLPTQYGRLKAYEDRFEYWDRLTTRANRCCAPRVQPLGPQRPASYYTPADYGLEDDD*