Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191240 | KEH36503.1 | 98.558 | 624 | 9 | 0 | 1 | 624 | 52 | 675 | 0.0 | 1285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191240 | sp|Q02981|YP109_YEAST | 29.336 | 542 | 300 | 11 | 130 | 600 | 69 | 598 | 1.26e-71 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191240 | A0A072V582 | 98.558 | 624 | 9 | 0 | 1 | 624 | 52 | 675 | 0.0 | 1285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0191240 | Msa0311870 | 0.971192 | 8.863605e-133 | -8.615850e-47 |
| Msa0191240 | Msa0829610 | 0.975874 | 9.263833e-141 | -8.615850e-47 |
| Msa0191240 | Msa0867900 | 0.976740 | 2.082004e-142 | -8.615850e-47 |
| Msa0191240 | Msa1425840 | 0.870601 | 1.290186e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191240 | MtrunA17_Chr2g0281061 | 98.558 | 624 | 9 | 0 | 1 | 624 | 1 | 624 | 0.0 | 1285 |
| Msa0191240 | MtrunA17_Chr4g0048521 | 75.598 | 627 | 148 | 2 | 1 | 624 | 6 | 630 | 0.0 | 978 |
| Msa0191240 | MtrunA17_Chr8g0360981 | 59.008 | 605 | 224 | 5 | 31 | 624 | 31 | 622 | 0.0 | 718 |
| Msa0191240 | MtrunA17_Chr3g0120791 | 29.206 | 315 | 194 | 7 | 214 | 523 | 203 | 493 | 2.76e-32 | 132 |
| Msa0191240 | MtrunA17_Chr3g0129101 | 29.605 | 304 | 188 | 7 | 211 | 508 | 200 | 483 | 3.05e-29 | 123 |
| Msa0191240 | MtrunA17_Chr8g0382921 | 28.667 | 300 | 188 | 7 | 211 | 504 | 191 | 470 | 3.41e-27 | 117 |
| Msa0191240 | MtrunA17_Chr3g0136721 | 24.427 | 393 | 263 | 8 | 221 | 600 | 141 | 512 | 7.44e-25 | 109 |
| Msa0191240 | MtrunA17_Chr6g0465161 | 27.273 | 385 | 246 | 8 | 218 | 598 | 132 | 486 | 1.61e-23 | 105 |
| Msa0191240 | MtrunA17_Chr4g0012061 | 27.425 | 299 | 184 | 6 | 224 | 514 | 161 | 434 | 1.54e-22 | 102 |
| Msa0191240 | MtrunA17_Chr5g0428451 | 25.948 | 343 | 228 | 8 | 213 | 550 | 126 | 447 | 7.22e-22 | 99.8 |
| Msa0191240 | MtrunA17_Chr1g0148121 | 28.269 | 283 | 179 | 6 | 216 | 494 | 132 | 394 | 4.30e-21 | 97.8 |
| Msa0191240 | MtrunA17_Chr1g0147481 | 26.667 | 345 | 203 | 11 | 192 | 508 | 86 | 408 | 2.19e-19 | 92.8 |
| Msa0191240 | MtrunA17_Chr1g0199921 | 26.923 | 338 | 211 | 7 | 217 | 539 | 202 | 518 | 5.90e-19 | 91.3 |
| Msa0191240 | MtrunA17_Chr1g0169361 | 25.342 | 292 | 194 | 6 | 218 | 508 | 187 | 455 | 8.76e-19 | 90.9 |
| Msa0191240 | MtrunA17_Chr4g0057941 | 27.414 | 321 | 189 | 10 | 226 | 529 | 79 | 372 | 1.82e-18 | 88.6 |
| Msa0191240 | MtrunA17_Chr3g0113361 | 27.500 | 320 | 192 | 12 | 224 | 524 | 96 | 394 | 1.39e-17 | 86.3 |
| Msa0191240 | MtrunA17_Chr7g0230671 | 26.761 | 284 | 189 | 6 | 226 | 508 | 151 | 416 | 1.74e-17 | 86.7 |
| Msa0191240 | MtrunA17_Chr5g0433911 | 25.965 | 285 | 188 | 8 | 229 | 510 | 77 | 341 | 8.00e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191240 | AT1G11390.1 | 72.172 | 557 | 143 | 4 | 71 | 624 | 77 | 624 | 0.0 | 851 |
| Msa0191240 | AT1G61640.1 | 64.991 | 557 | 190 | 4 | 71 | 624 | 67 | 621 | 0.0 | 750 |
| Msa0191240 | AT1G61640.3 | 63.514 | 518 | 184 | 4 | 71 | 585 | 67 | 582 | 0.0 | 676 |
| Msa0191240 | AT1G61640.2 | 57.527 | 372 | 155 | 2 | 71 | 441 | 67 | 436 | 2.97e-149 | 440 |
| Msa0191240 | AT3G07700.3 | 29.393 | 313 | 194 | 7 | 214 | 523 | 192 | 480 | 4.23e-30 | 126 |
| Msa0191240 | AT3G07700.1 | 29.393 | 313 | 194 | 7 | 214 | 523 | 192 | 480 | 4.59e-30 | 126 |
| Msa0191240 | AT3G07700.2 | 29.393 | 313 | 194 | 7 | 214 | 523 | 192 | 480 | 4.59e-30 | 126 |
| Msa0191240 | AT3G07700.4 | 29.393 | 313 | 194 | 7 | 214 | 523 | 192 | 480 | 4.59e-30 | 126 |
| Msa0191240 | AT5G64940.1 | 29.276 | 304 | 189 | 7 | 211 | 508 | 215 | 498 | 2.08e-28 | 121 |
| Msa0191240 | AT5G64940.2 | 29.276 | 304 | 189 | 7 | 211 | 508 | 215 | 498 | 2.08e-28 | 121 |
| Msa0191240 | AT5G24970.2 | 25.618 | 445 | 269 | 12 | 186 | 600 | 148 | 560 | 1.50e-26 | 115 |
| Msa0191240 | AT5G24970.3 | 25.618 | 445 | 269 | 12 | 186 | 600 | 109 | 521 | 1.56e-26 | 115 |
| Msa0191240 | AT1G79600.1 | 29.110 | 292 | 188 | 6 | 218 | 508 | 150 | 423 | 5.76e-26 | 113 |
| Msa0191240 | AT5G24970.1 | 25.169 | 445 | 268 | 13 | 186 | 600 | 109 | 518 | 1.78e-23 | 105 |
| Msa0191240 | AT1G65950.2 | 29.730 | 296 | 186 | 8 | 177 | 463 | 53 | 335 | 2.45e-23 | 103 |
| Msa0191240 | AT1G65950.1 | 29.730 | 296 | 186 | 8 | 177 | 463 | 53 | 335 | 4.34e-23 | 103 |
| Msa0191240 | AT1G71810.1 | 25.654 | 382 | 256 | 7 | 218 | 598 | 123 | 477 | 2.23e-21 | 99.4 |
| Msa0191240 | AT4G24810.6 | 27.628 | 333 | 190 | 10 | 218 | 527 | 25 | 329 | 3.82e-20 | 94.0 |
| Msa0191240 | AT4G24810.1 | 27.628 | 333 | 190 | 10 | 218 | 527 | 25 | 329 | 3.82e-20 | 94.0 |
| Msa0191240 | AT4G24810.4 | 27.900 | 319 | 181 | 9 | 218 | 515 | 25 | 315 | 4.04e-20 | 92.0 |
| Msa0191240 | AT4G24810.2 | 27.164 | 335 | 193 | 9 | 218 | 529 | 68 | 374 | 4.24e-20 | 94.4 |
| Msa0191240 | AT4G24810.5 | 29.352 | 293 | 158 | 9 | 218 | 489 | 25 | 289 | 1.13e-19 | 90.9 |
| Msa0191240 | AT5G50330.1 | 25.872 | 344 | 212 | 10 | 226 | 550 | 76 | 395 | 1.26e-19 | 92.8 |
| Msa0191240 | AT4G31390.1 | 27.365 | 296 | 175 | 8 | 216 | 499 | 168 | 435 | 1.31e-19 | 93.6 |
| Msa0191240 | AT3G24190.1 | 25.581 | 301 | 193 | 8 | 211 | 508 | 191 | 463 | 1.59e-19 | 93.6 |
| Msa0191240 | AT4G24810.3 | 27.193 | 342 | 191 | 11 | 218 | 529 | 25 | 338 | 5.04e-19 | 90.5 |
| Msa0191240 | AT2G39190.2 | 22.388 | 402 | 272 | 8 | 217 | 599 | 201 | 581 | 1.83e-18 | 90.1 |
| Msa0191240 | AT5G05200.1 | 23.907 | 343 | 235 | 8 | 213 | 550 | 127 | 448 | 9.01e-18 | 87.4 |
| Msa0191240 | AT5G24810.1 | 26.861 | 309 | 184 | 8 | 216 | 508 | 100 | 382 | 2.39e-16 | 83.6 |
| Msa0191240 | AT2G40090.1 | 25.817 | 306 | 195 | 12 | 224 | 514 | 98 | 386 | 2.14e-13 | 73.6 |
| Msa0191240 | AT5G24810.2 | 25.588 | 340 | 180 | 10 | 216 | 508 | 100 | 413 | 5.07e-13 | 73.2 |
| Msa0191240 | AT5G50330.2 | 23.547 | 344 | 204 | 10 | 226 | 550 | 76 | 379 | 6.33e-13 | 71.6 |
| Msa0191240 | AT4G31390.3 | 25.475 | 263 | 156 | 8 | 249 | 499 | 2 | 236 | 1.14e-11 | 67.8 |
| Msa0191240 | AT2G39190.1 | 27.108 | 166 | 112 | 2 | 217 | 382 | 201 | 357 | 3.99e-11 | 65.5 |
Find 170 sgRNAs with CRISPR-Local
Find 418 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTCCCAATTCCTTTCT+TGG | 0.184162 | 2_1:-6803462 | None:intergenic |
| GGACCGTTTGCAGATTATTT+TGG | 0.196932 | 2_1:+6799626 | Msa0191240:CDS |
| TGCTAGTTTGATGAAGAATT+TGG | 0.231329 | 2_1:-6798029 | None:intergenic |
| TGCCTGAGCAATCATATTTA+TGG | 0.231958 | 2_1:-6799354 | None:intergenic |
| CTTAGGACACTGAGATGTTT+TGG | 0.237086 | 2_1:-6803256 | None:intergenic |
| AAATCTGCTCTTGCTCATAT+TGG | 0.237300 | 2_1:+6800319 | Msa0191240:CDS |
| AGCCATAGTTTCCTAAAATT+TGG | 0.244909 | 2_1:-6799650 | None:intergenic |
| CAGGTCCTGCTTTCATAAAA+TGG | 0.265236 | 2_1:+6799702 | Msa0191240:CDS |
| TCCTGGGAATATTCTTGTTC+GGG | 0.277946 | 2_1:+6801290 | Msa0191240:CDS |
| AAATGAATTTCTTGGGCCTT+AGG | 0.287922 | 2_1:+6797910 | None:intergenic |
| GACCTTTCTTACACAATTGA+TGG | 0.297388 | 2_1:+6803156 | Msa0191240:CDS |
| TTTGACTCGCTCTTATTTGC+TGG | 0.307748 | 2_1:+6799388 | Msa0191240:CDS |
| CGATGAACCAAGAAAGGAAT+TGG | 0.316206 | 2_1:+6803455 | Msa0191240:three_prime_UTR |
| GGATGAACTATGTCACCTTC+TGG | 0.327276 | 2_1:-6802694 | None:intergenic |
| AATCTGCTCTTGCTCATATT+GGG | 0.336729 | 2_1:+6800320 | Msa0191240:CDS |
| TCAATGAAAGCCTTTGGATT+AGG | 0.336903 | 2_1:-6801495 | None:intergenic |
| CTGCATCTCCCCAACTTCGC+TGG | 0.337075 | 2_1:-6799454 | None:intergenic |
| GCTTCATTATGAAACTTATA+CGG | 0.339442 | 2_1:-6799158 | None:intergenic |
| CTGAACTCTCTGGTAGTGAT+AGG | 0.345467 | 2_1:+6801379 | Msa0191240:CDS |
| ATTACCTCAATGAAAGCCTT+TGG | 0.353972 | 2_1:-6801501 | None:intergenic |
| ATCCTGGGAATATTCTTGTT+CGG | 0.355681 | 2_1:+6801289 | Msa0191240:CDS |
| TGCATTCTCCCAGCGAAGTT+GGG | 0.356054 | 2_1:+6799445 | Msa0191240:CDS |
| AGTGTCTCACGTTATGTTGA+TGG | 0.359513 | 2_1:+6800274 | Msa0191240:CDS |
| TAGTGATAGGGTAAATTTAC+TGG | 0.362630 | 2_1:+6801392 | Msa0191240:CDS |
| CGCTCTTATTTGCTGGTACC+TGG | 0.380022 | 2_1:+6799395 | Msa0191240:CDS |
| TACGTGGAAGTGAGTAGAAA+TGG | 0.384419 | 2_1:+6799086 | Msa0191240:CDS |
| CTTTGCTGCTTAGAGCTGAT+TGG | 0.385374 | 2_1:+6803127 | Msa0191240:CDS |
| TATAAATGAAGCGGTTCAAA+TGG | 0.389020 | 2_1:-6800159 | None:intergenic |
| TTGAAAATTAAACAAAATAC+AGG | 0.391296 | 2_1:-6803345 | None:intergenic |
| AATGAATTTCTTGGGCCTTA+GGG | 0.393088 | 2_1:+6797911 | None:intergenic |
| AGGTCCTGCTTTCATAAAAT+GGG | 0.393124 | 2_1:+6799703 | Msa0191240:CDS |
| TGGTGGGTATTTGGTCCAAC+CGG | 0.393551 | 2_1:-6799119 | None:intergenic |
| ACATGTAATTATACCCATCT+TGG | 0.394243 | 2_1:-6799514 | None:intergenic |
| ACAAGTGGATAGACAGGCTT+AGG | 0.396500 | 2_1:-6800211 | None:intergenic |
| AACCGGCAGTGGTGGGTATT+TGG | 0.401639 | 2_1:-6799128 | None:intergenic |
| GATGAACTATGTCACCTTCT+GGG | 0.406064 | 2_1:-6802693 | None:intergenic |
| CTTCCCTAGCAAGGTCAACT+TGG | 0.407373 | 2_1:-6800132 | None:intergenic |
| TTTGCTGCTTAGAGCTGATT+GGG | 0.407859 | 2_1:+6803128 | Msa0191240:CDS |
| ACTCATGGCTCCTTGATTAG+AGG | 0.412428 | 2_1:+6803179 | Msa0191240:exon |
| GAAGAGATTCCTGTTGCATC+TGG | 0.418717 | 2_1:+6799884 | Msa0191240:CDS |
| TTTGGTCCAACCGGGACAAT+TGG | 0.420166 | 2_1:-6799110 | None:intergenic |
| CGTCATAGAGTTAATATTGA+TGG | 0.434073 | 2_1:+6802754 | Msa0191240:CDS |
| TTTACGTTCATGATAGTTGA+AGG | 0.437184 | 2_1:+6799542 | Msa0191240:CDS |
| ATTGGTAGAAACATATGAAA+AGG | 0.438740 | 2_1:+6800246 | Msa0191240:CDS |
| ACTTGTGCACCCTGCTGTAT+TGG | 0.440205 | 2_1:+6800228 | Msa0191240:CDS |
| TCATTTATAATTTCCGCAGC+TGG | 0.441166 | 2_1:+6800173 | Msa0191240:CDS |
| TGGCAGCGAAAGCTTGATCC+TGG | 0.443745 | 2_1:+6803078 | Msa0191240:CDS |
| CAAAGAAACGGCAGTCTTGA+GGG | 0.445001 | 2_1:-6803283 | None:intergenic |
| TTTCAAATCTGTTGCCCGCC+GGG | 0.446800 | 2_1:+6801419 | Msa0191240:CDS |
| ATTCATGCAGATATGCATCC+TGG | 0.451986 | 2_1:+6801273 | Msa0191240:CDS |
| ACTTATACGGCATGTAGAAC+CGG | 0.458097 | 2_1:-6799145 | None:intergenic |
| ATTCTCAGATTGCGTGGAAA+AGG | 0.458269 | 2_1:+6799282 | Msa0191240:CDS |
| AAATCTGTTGCCCGCCGGGA+TGG | 0.459158 | 2_1:+6801423 | Msa0191240:CDS |
| TTGGTAGAAACATATGAAAA+GGG | 0.459990 | 2_1:+6800247 | Msa0191240:CDS |
| AGCAATTACTTGAGAAAGTC+AGG | 0.463123 | 2_1:+6802731 | Msa0191240:CDS |
| CACCATAAATATGATTGCTC+AGG | 0.470184 | 2_1:+6799352 | Msa0191240:CDS |
| GTCCATCAATTGTGTAAGAA+AGG | 0.470237 | 2_1:-6803158 | None:intergenic |
| TTGCATTCTCCCAGCGAAGT+TGG | 0.471522 | 2_1:+6799444 | Msa0191240:CDS |
| CAAAACATCTCAGTGTCCTA+AGG | 0.474278 | 2_1:+6803257 | Msa0191240:three_prime_UTR |
| TTAATGTAGCACGGTGCACT+TGG | 0.476026 | 2_1:-6799916 | None:intergenic |
| TGCATCTCCCCAACTTCGCT+GGG | 0.476786 | 2_1:-6799453 | None:intergenic |
| CATGTAATTATACCCATCTT+GGG | 0.480516 | 2_1:-6799513 | None:intergenic |
| TGTTCATTCCCGCTCTTAAG+TGG | 0.482039 | 2_1:+6800062 | Msa0191240:CDS |
| GATTGCTCAGGCAGTGAGCT+TGG | 0.483437 | 2_1:+6799364 | Msa0191240:CDS |
| TATGTTTCTACCAATACAGC+AGG | 0.484385 | 2_1:-6800238 | None:intergenic |
| TTGTATATGCGTGCCCAAGA+TGG | 0.484797 | 2_1:+6799500 | Msa0191240:CDS |
| AGCGGTACGGCCATCCCGGC+GGG | 0.489699 | 2_1:-6801433 | None:intergenic |
| TGTCCCAAGTTGACCTTGCT+AGG | 0.497358 | 2_1:+6800128 | Msa0191240:CDS |
| ACATTAAAATATCGTTATCC+TGG | 0.498375 | 2_1:+6799932 | Msa0191240:CDS |
| TTACACAATTGATGGACTCA+TGG | 0.498739 | 2_1:+6803164 | Msa0191240:CDS |
| AATTGCTCCATGCACTCTGC+AGG | 0.499228 | 2_1:-6802715 | None:intergenic |
| GCCGTGAAGGTTAGACATCC+TGG | 0.500885 | 2_1:+6799980 | Msa0191240:CDS |
| TTTCTAACAGGAAGTGGAAG+AGG | 0.501398 | 2_1:+6802651 | Msa0191240:intron |
| CTGATTGATTCTCCCACACC+AGG | 0.506024 | 2_1:-6799998 | None:intergenic |
| ACCACTGGTGGTTGCCGTGA+AGG | 0.510120 | 2_1:+6799967 | Msa0191240:CDS |
| ACAAAGAAACGGCAGTCTTG+AGG | 0.512689 | 2_1:-6803284 | None:intergenic |
| ACCAGGATGTCTAACCTTCA+CGG | 0.516286 | 2_1:-6799981 | None:intergenic |
| GACCAAATACCCACCACTGC+CGG | 0.518056 | 2_1:+6799126 | Msa0191240:CDS |
| TATACAATCCTTCCTGTGGT+TGG | 0.519758 | 2_1:-6799484 | None:intergenic |
| TCACCAATCGCACAAAACTA+AGG | 0.519983 | 2_1:+6797984 | Msa0191240:five_prime_UTR |
| CTGCAGCGGTACGGCCATCC+CGG | 0.520825 | 2_1:-6801437 | None:intergenic |
| AACGGTCCCATCACAATGGT+TGG | 0.522108 | 2_1:-6799611 | None:intergenic |
| GCAGTCTTGAGGGAGCCCTT+AGG | 0.525030 | 2_1:-6803273 | None:intergenic |
| CTCATGGCTCCTTGATTAGA+GGG | 0.527193 | 2_1:+6803180 | Msa0191240:exon |
| GGGTGCACAAGTGGATAGAC+AGG | 0.530159 | 2_1:-6800217 | None:intergenic |
| GATGAACCAAGAAAGGAATT+GGG | 0.531211 | 2_1:+6803456 | Msa0191240:three_prime_UTR |
| ACGTGGAAGTGAGTAGAAAT+GGG | 0.531630 | 2_1:+6799087 | Msa0191240:CDS |
| ATTCACTCCAACCATTGTGA+TGG | 0.532321 | 2_1:+6799604 | Msa0191240:CDS |
| TGTATATGCGTGCCCAAGAT+GGG | 0.535161 | 2_1:+6799501 | Msa0191240:CDS |
| GGTGACGACCTTGGTTCTTG+AGG | 0.535537 | 2_1:+6802795 | Msa0191240:CDS |
| TGCAGAACGTTTCCAACCAC+AGG | 0.535550 | 2_1:+6799472 | Msa0191240:CDS |
| TCCGTTCATAAAATAAATAG+AGG | 0.535725 | 2_1:+6799059 | Msa0191240:CDS |
| AAATCTACTACTATCACCAC+TGG | 0.538008 | 2_1:-6799324 | None:intergenic |
| CTTAAGAGCGGGAATGAACA+TGG | 0.538208 | 2_1:-6800059 | None:intergenic |
| TAGAAATGGGCCAATTGTCC+CGG | 0.538260 | 2_1:+6799100 | Msa0191240:CDS |
| GCGCCACGATGAACCAAGAA+AGG | 0.540549 | 2_1:+6803449 | Msa0191240:three_prime_UTR |
| GGCATGACTGCTGAACTCTC+TGG | 0.542426 | 2_1:+6801369 | Msa0191240:CDS |
| AGTTCATCCTGCAGAGTGCA+TGG | 0.544535 | 2_1:+6802708 | Msa0191240:CDS |
| AATCTTAACCACTTAAGAGC+GGG | 0.544613 | 2_1:-6800070 | None:intergenic |
| ATAAATGAAGCGGTTCAAAT+GGG | 0.546042 | 2_1:-6800158 | None:intergenic |
| GCATGTAGAACCGGCAGTGG+TGG | 0.550140 | 2_1:-6799136 | None:intergenic |
| TTCACTCCAACCATTGTGAT+GGG | 0.551609 | 2_1:+6799605 | Msa0191240:CDS |
| TAATCCAAAGGCTTTCATTG+AGG | 0.552069 | 2_1:+6801497 | Msa0191240:CDS |
| GCATTCTCCCAGCGAAGTTG+GGG | 0.555043 | 2_1:+6799446 | Msa0191240:CDS |
| CACACCATTCTCAGATTGCG+TGG | 0.555938 | 2_1:+6799276 | Msa0191240:CDS |
| GTGCGCATTCTGCAGCGGTA+CGG | 0.556512 | 2_1:-6801446 | None:intergenic |
| TACTGTCATGGTGACGACCT+TGG | 0.558128 | 2_1:+6802786 | Msa0191240:CDS |
| GCAATGCTTCCAGATGCAAC+AGG | 0.562469 | 2_1:-6799893 | None:intergenic |
| AATGGGCCAATTGTCCCGGT+TGG | 0.564966 | 2_1:+6799104 | Msa0191240:CDS |
| TTCCCTAGCAAGGTCAACTT+GGG | 0.566297 | 2_1:-6800131 | None:intergenic |
| GTGTAGCTGAAACTATGCTC+AGG | 0.567262 | 2_1:-6799803 | None:intergenic |
| CTGAGCAATCATATTTATGG+TGG | 0.567808 | 2_1:-6799351 | None:intergenic |
| TTCATGCAGATATGCATCCT+GGG | 0.568436 | 2_1:+6801274 | Msa0191240:CDS |
| CTTTCATAAAATGGGGTCAG+TGG | 0.569229 | 2_1:+6799711 | Msa0191240:CDS |
| ATGAACTATGTCACCTTCTG+GGG | 0.571340 | 2_1:-6802692 | None:intergenic |
| ACCTTCACGGCAACCACCAG+TGG | 0.571742 | 2_1:-6799968 | None:intergenic |
| AGGGAAAGCTTTAACAAATG+TGG | 0.575031 | 2_1:+6799209 | Msa0191240:CDS |
| GGTCCAAAATAATCTGCAAA+CGG | 0.575702 | 2_1:-6799629 | None:intergenic |
| CATGTAGAACCGGCAGTGGT+GGG | 0.575943 | 2_1:-6799135 | None:intergenic |
| TTATAATTTCCGCAGCTGGA+AGG | 0.578670 | 2_1:+6800177 | Msa0191240:CDS |
| GTGTGGGAGAATCAATCAGA+AGG | 0.581866 | 2_1:+6800002 | Msa0191240:CDS |
| AAATCATATAAGAAACCCTA+AGG | 0.582382 | 2_1:-6797926 | None:intergenic |
| TGGTAATGTTTGTACTGTCA+TGG | 0.583589 | 2_1:+6802774 | Msa0191240:CDS |
| CCCCGAACAAGAATATTCCC+AGG | 0.587079 | 2_1:-6801291 | None:intergenic |
| GGTGGGTATTTGGTCCAACC+GGG | 0.587788 | 2_1:-6799118 | None:intergenic |
| AATACAGCAGGGTGCACAAG+TGG | 0.588357 | 2_1:-6800226 | None:intergenic |
| GTCCCAAGTTGACCTTGCTA+GGG | 0.588745 | 2_1:+6800129 | Msa0191240:CDS |
| AATGGGCAGCTTCCCTAGCA+AGG | 0.589522 | 2_1:-6800141 | None:intergenic |
| CAGCGGTACGGCCATCCCGG+CGG | 0.593776 | 2_1:-6801434 | None:intergenic |
| TGAACTCTCTGGTAGTGATA+GGG | 0.595798 | 2_1:+6801380 | Msa0191240:CDS |
| TAATGTAGCACGGTGCACTT+GGG | 0.600061 | 2_1:-6799915 | None:intergenic |
| GGCAGCGAAAGCTTGATCCT+GGG | 0.600800 | 2_1:+6803079 | Msa0191240:CDS |
| AAGGTTAGACATCCTGGTGT+GGG | 0.602666 | 2_1:+6799986 | Msa0191240:CDS |
| AGCTGAGTGCATAGATCTCG+AGG | 0.605437 | 2_1:-6799758 | None:intergenic |
| ACGGCATGTAGAACCGGCAG+TGG | 0.607529 | 2_1:-6799139 | None:intergenic |
| TTTCATAAAATGGGGTCAGT+GGG | 0.608104 | 2_1:+6799712 | Msa0191240:CDS |
| TGAAAATTAAACAAAATACA+GGG | 0.608528 | 2_1:-6803344 | None:intergenic |
| AAAACATCTCAGTGTCCTAA+GGG | 0.610534 | 2_1:+6803258 | Msa0191240:three_prime_UTR |
| AATGTATGAAGTTCTTCTAG+AGG | 0.614261 | 2_1:-6797956 | None:intergenic |
| GCTTAGAGCTGATTGGGCAA+AGG | 0.614729 | 2_1:+6803134 | Msa0191240:CDS |
| AGCATGTTCTCTTACTCCCA+AGG | 0.614917 | 2_1:+6798048 | Msa0191240:five_prime_UTR |
| ACAGAATTGTCCTAATCCAA+AGG | 0.616547 | 2_1:+6801485 | Msa0191240:CDS |
| GGGGTCAGTGGGCCGCTACG+CGG | 0.616757 | 2_1:+6799723 | Msa0191240:CDS |
| AAGAAACATCCTTCCAGCTG+CGG | 0.618231 | 2_1:-6800186 | None:intergenic |
| ATTCCTTTCTTGGTTCATCG+TGG | 0.619033 | 2_1:-6803452 | None:intergenic |
| GTCTGCATCACATCGTACCC+AGG | 0.619350 | 2_1:-6803096 | None:intergenic |
| TGCGGAAATTATAAATGAAG+CGG | 0.620081 | 2_1:-6800168 | None:intergenic |
| TACAGAAAGTACTGTTCCAG+TGG | 0.620946 | 2_1:+6799308 | Msa0191240:CDS |
| CGCATATACAATCCTTCCTG+TGG | 0.621310 | 2_1:-6799488 | None:intergenic |
| GAAGGTTAGACATCCTGGTG+TGG | 0.621587 | 2_1:+6799985 | Msa0191240:CDS |
| CAAGTGGATAGACAGGCTTA+GGG | 0.625206 | 2_1:-6800210 | None:intergenic |
| ATGGCTCCTTGATTAGAGGG+AGG | 0.627887 | 2_1:+6803183 | Msa0191240:exon |
| TGGTAAACAAGCAAAACCAC+TGG | 0.628724 | 2_1:+6799952 | Msa0191240:CDS |
| AATAATTACCTCAAGAACCA+AGG | 0.630120 | 2_1:-6802803 | None:intergenic |
| TGAGCAATCATATTTATGGT+GGG | 0.639230 | 2_1:-6799350 | None:intergenic |
| GAACGTTTCCAACCACAGGA+AGG | 0.642315 | 2_1:+6799476 | Msa0191240:CDS |
| CCTGGGAATATTCTTGTTCG+GGG | 0.646006 | 2_1:+6801291 | Msa0191240:CDS |
| GTATGAAGTTCTTCTAGAGG+CGG | 0.648018 | 2_1:-6797953 | None:intergenic |
| AATAAATAGAGGCAGATACG+TGG | 0.651014 | 2_1:+6799070 | Msa0191240:CDS |
| TGCAAACGGTCCCATCACAA+TGG | 0.656016 | 2_1:-6799615 | None:intergenic |
| TAATCTTAACCACTTAAGAG+CGG | 0.658895 | 2_1:-6800071 | None:intergenic |
| ACTGAGTGCGCATTCTGCAG+CGG | 0.662239 | 2_1:-6801451 | None:intergenic |
| GGTCCTGCTTTCATAAAATG+GGG | 0.673913 | 2_1:+6799704 | Msa0191240:CDS |
| GAAAATTAAACAAAATACAG+GGG | 0.674782 | 2_1:-6803343 | None:intergenic |
| TTTCTCAAGAGCCTTAACAA+CGG | 0.679204 | 2_1:-6803213 | None:intergenic |
| ACGTCTAAGAAAATTACATG+AGG | 0.681342 | 2_1:-6801345 | None:intergenic |
| TGTGGGAGAATCAATCAGAA+GGG | 0.688516 | 2_1:+6800003 | Msa0191240:CDS |
| TAAACAAGCAAAACCACTGG+TGG | 0.694708 | 2_1:+6799955 | Msa0191240:CDS |
| ATGTTTCTACCAATACAGCA+GGG | 0.721417 | 2_1:-6800237 | None:intergenic |
| CTAGTGTTCGATGAACAACG+CGG | 0.805665 | 2_1:-6799673 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAGTTACAAATATT+AGG | - | chr2_1:6803049-6803068 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAACAAAGAAA+CGG | - | chr2_1:6803298-6803317 | None:intergenic | 10.0% |
| !!! | TTTGTAATAGATATTTGTTA+TGG | + | chr2_1:6798152-6798171 | Msa0191240:intron | 15.0% |
| !! | TTCAAAATTGTCAAAAATTT+CGG | - | chr2_1:6799867-6799886 | None:intergenic | 15.0% |
| !! | AATAAAAAAAATAATCCCAT+TGG | - | chr2_1:6801077-6801096 | None:intergenic | 15.0% |
| !!! | GATTATTTTTTTTATTCAAG+CGG | + | chr2_1:6801081-6801100 | Msa0191240:intron | 15.0% |
| !!! | AAAAAATGTTTTAGATTTAG+AGG | - | chr2_1:6801150-6801169 | None:intergenic | 15.0% |
| !!! | TAAAACATTTTTTGTATCTA+CGG | + | chr2_1:6801157-6801176 | Msa0191240:intron | 15.0% |
| !! | TTTAATACATATACAAACAA+AGG | + | chr2_1:6802027-6802046 | Msa0191240:intron | 15.0% |
| !! | AATTCTTCACATATAAATAT+AGG | - | chr2_1:6802367-6802386 | None:intergenic | 15.0% |
| !! | AATCATTTAAATCTACAATT+AGG | - | chr2_1:6802410-6802429 | None:intergenic | 15.0% |
| !! | GAATATAAAATAAGAAATGA+TGG | - | chr2_1:6802465-6802484 | None:intergenic | 15.0% |
| !!! | TTTGTAACTTTATAATTTGT+AGG | + | chr2_1:6803053-6803072 | Msa0191240:intron | 15.0% |
| !!! | TTGTAACTTTATAATTTGTA+GGG | + | chr2_1:6803054-6803073 | Msa0191240:intron | 15.0% |
| !! | TGAAAATTAAACAAAATACA+GGG | - | chr2_1:6803347-6803366 | None:intergenic | 15.0% |
| !! | TTGAAAATTAAACAAAATAC+AGG | - | chr2_1:6803348-6803367 | None:intergenic | 15.0% |
| !! | TAAAAATGCTATATTATTGT+TGG | + | chr2_1:6803489-6803508 | Msa0191240:three_prime_UTR | 15.0% |
| !!! | TCTATTTTCATTTGCATTTT+TGG | + | chr2_1:6798094-6798113 | Msa0191240:intron | 20.0% |
| !!! | CTATTTTCATTTGCATTTTT+GGG | + | chr2_1:6798095-6798114 | Msa0191240:intron | 20.0% |
| !!! | TATTTTCATTTGCATTTTTG+GGG | + | chr2_1:6798096-6798115 | Msa0191240:intron | 20.0% |
| !! | ATATTCGTTTATTTGATCAT+AGG | + | chr2_1:6798184-6798203 | Msa0191240:intron | 20.0% |
| !!! | AAAATCTAGACTTTTCTTTA+TGG | + | chr2_1:6798213-6798232 | Msa0191240:intron | 20.0% |
| !!! | AAATCTAGACTTTTCTTTAT+GGG | + | chr2_1:6798214-6798233 | Msa0191240:intron | 20.0% |
| !!! | TATATGCTTTTTCAATTCTA+TGG | + | chr2_1:6798309-6798328 | Msa0191240:intron | 20.0% |
| !!! | TTTTTGGTGAATTAAAGTTT+AGG | + | chr2_1:6798540-6798559 | Msa0191240:intron | 20.0% |
| !! | TGGGTTATTAGATAAAATTA+AGG | + | chr2_1:6798721-6798740 | Msa0191240:intron | 20.0% |
| !! | TAAAATTAGATTTGCATCAA+GGG | - | chr2_1:6798910-6798929 | None:intergenic | 20.0% |
| !! | ATAAAATTAGATTTGCATCA+AGG | - | chr2_1:6798911-6798930 | None:intergenic | 20.0% |
| !!! | ATCTAATTTTATGCTTTTTG+TGG | + | chr2_1:6798919-6798938 | Msa0191240:intron | 20.0% |
| !!! | AATGTTTTGATAACATAATC+CGG | - | chr2_1:6798972-6798991 | None:intergenic | 20.0% |
| !!! | ATTATTTTGGACCAAATTTT+AGG | + | chr2_1:6799639-6799658 | Msa0191240:CDS | 20.0% |
| !! | TCAAAATTGTCAAAAATTTC+GGG | - | chr2_1:6799866-6799885 | None:intergenic | 20.0% |
| !!! | ATAAAAACGAAGTGTTATAA+AGG | + | chr2_1:6800462-6800481 | Msa0191240:intron | 20.0% |
| !! | TCAAAAAAAATTACATTGTG+AGG | - | chr2_1:6800492-6800511 | None:intergenic | 20.0% |
| !! | ATTAGATAAACAAGTTATCT+TGG | - | chr2_1:6800714-6800733 | None:intergenic | 20.0% |
| !!! | ATATTTAGCTTTCCTTTTTA+AGG | + | chr2_1:6801003-6801022 | Msa0191240:intron | 20.0% |
| !!! | TATTTAGCTTTCCTTTTTAA+GGG | + | chr2_1:6801004-6801023 | Msa0191240:intron | 20.0% |
| !! | TTAAAATTACTGCTTACAAA+GGG | - | chr2_1:6801191-6801210 | None:intergenic | 20.0% |
| !!! | TTTAAAATTACTGCTTACAA+AGG | - | chr2_1:6801192-6801211 | None:intergenic | 20.0% |
| !!! | GTAAGCAGTAATTTTAAATT+TGG | + | chr2_1:6801194-6801213 | Msa0191240:intron | 20.0% |
| !! | AAAAAATCGATAATCTAAGT+TGG | - | chr2_1:6801536-6801555 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTTTTTGTGAAA+GGG | + | chr2_1:6801785-6801804 | Msa0191240:intron | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | - | chr2_1:6801984-6802003 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | - | chr2_1:6801985-6802004 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | - | chr2_1:6801986-6802005 | None:intergenic | 20.0% |
| !! | TTTAAATGATTTATTGTGCA+TGG | + | chr2_1:6802419-6802438 | Msa0191240:intron | 20.0% |
| !! | GAAAATTAAACAAAATACAG+GGG | - | chr2_1:6803346-6803365 | None:intergenic | 20.0% |
| !!! | CAATAATATAGCATTTTTAC+AGG | - | chr2_1:6803488-6803507 | None:intergenic | 20.0% |
| ! | AAATCATATAAGAAACCCTA+AGG | - | chr2_1:6797929-6797948 | None:intergenic | 25.0% |
| ! | ATGCAAATGAAAATAGAGAA+GGG | - | chr2_1:6798091-6798110 | None:intergenic | 25.0% |
| ! | AATGCAAATGAAAATAGAGA+AGG | - | chr2_1:6798092-6798111 | None:intergenic | 25.0% |
| !!! | ATTTTCATTTGCATTTTTGG+GGG | + | chr2_1:6798097-6798116 | Msa0191240:intron | 25.0% |
| !! | AATCTAGACTTTTCTTTATG+GGG | + | chr2_1:6798215-6798234 | Msa0191240:intron | 25.0% |
| !! | ATTGGTTATCTTTTCTACAT+TGG | + | chr2_1:6798356-6798375 | Msa0191240:intron | 25.0% |
| !!! | GGGCATTTATTGATTTTTTT+TGG | + | chr2_1:6798524-6798543 | Msa0191240:intron | 25.0% |
| ! | AATTAAAGTTTAGGTGAGTT+GGG | + | chr2_1:6798549-6798568 | Msa0191240:intron | 25.0% |
| !!! | AGTTATTTCTACAATCAAAG+AGG | + | chr2_1:6798768-6798787 | Msa0191240:intron | 25.0% |
| !!! | ATTTATTTTATGAACGGACT+GGG | - | chr2_1:6799057-6799076 | None:intergenic | 25.0% |
| !!! | TATTTATTTTATGAACGGAC+TGG | - | chr2_1:6799058-6799077 | None:intergenic | 25.0% |
| ! | TCCGTTCATAAAATAAATAG+AGG | + | chr2_1:6799059-6799078 | Msa0191240:CDS | 25.0% |
| !!! | GCCTCTATTTATTTTATGAA+CGG | - | chr2_1:6799063-6799082 | None:intergenic | 25.0% |
| ! | GCTTCATTATGAAACTTATA+CGG | - | chr2_1:6799161-6799180 | None:intergenic | 25.0% |
| !!! | AACGATATTTTAATGTAGCA+CGG | - | chr2_1:6799928-6799947 | None:intergenic | 25.0% |
| ! | ACATTAAAATATCGTTATCC+TGG | + | chr2_1:6799932-6799951 | Msa0191240:CDS | 25.0% |
| !!! | GGATTTTGCTATTATCAATA+CGG | + | chr2_1:6800024-6800043 | Msa0191240:CDS | 25.0% |
| ! | ATTGGTAGAAACATATGAAA+AGG | + | chr2_1:6800246-6800265 | Msa0191240:CDS | 25.0% |
| ! | TTGGTAGAAACATATGAAAA+GGG | + | chr2_1:6800247-6800266 | Msa0191240:CDS | 25.0% |
| !! | ACATTGCTATCATATAGTTT+TGG | + | chr2_1:6800401-6800420 | Msa0191240:intron | 25.0% |
| !!! | GGATTGATGAATGAATTTTT+TGG | + | chr2_1:6800636-6800655 | Msa0191240:intron | 25.0% |
| ! | CTATATCTTGACAAAGAAAA+CGG | - | chr2_1:6800796-6800815 | None:intergenic | 25.0% |
| ! | GTAACAAATAACAGATATCT+GGG | - | chr2_1:6801112-6801131 | None:intergenic | 25.0% |
| ! | TGTAACAAATAACAGATATC+TGG | - | chr2_1:6801113-6801132 | None:intergenic | 25.0% |
| !!! | TTATCGATTTTTTTTCCTGT+AGG | + | chr2_1:6801543-6801562 | Msa0191240:intron | 25.0% |
| !! | ATAATTAGGGTATTCTAACT+GGG | + | chr2_1:6801739-6801758 | Msa0191240:intron | 25.0% |
| ! | CTTTCACAAAAAGGAAAAAA+AGG | - | chr2_1:6801786-6801805 | None:intergenic | 25.0% |
| !!! | CTTTTTTTCCTTTTTGTGAA+AGG | + | chr2_1:6801784-6801803 | Msa0191240:intron | 25.0% |
| ! | AAAAACTAAAGTTTAACTGC+AGG | - | chr2_1:6801825-6801844 | None:intergenic | 25.0% |
| ! | GAGTATATAAAAAGAGATTG+TGG | - | chr2_1:6801857-6801876 | None:intergenic | 25.0% |
| ! | CAAAAATAAAGTCAAATGAG+TGG | - | chr2_1:6801899-6801918 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | - | chr2_1:6801937-6801956 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr2_1:6801938-6801957 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr2_1:6801974-6801993 | None:intergenic | 25.0% |
| ! | TATACAAACAAAGGACAATA+TGG | + | chr2_1:6802036-6802055 | Msa0191240:intron | 25.0% |
| ! | AAGAAATGTGAAAAAAGCAA+AGG | + | chr2_1:6802109-6802128 | Msa0191240:intron | 25.0% |
| ! | AGAAATGTGAAAAAAGCAAA+GGG | + | chr2_1:6802110-6802129 | Msa0191240:intron | 25.0% |
| !!! | TGCGTTAAAATTTGTTAGTT+TGG | + | chr2_1:6802216-6802235 | Msa0191240:intron | 25.0% |
| ! | TTTAAATCTGCGTCAAATAT+AGG | - | chr2_1:6802266-6802285 | None:intergenic | 25.0% |
| ! | ATGTGAAGAATTACTGTAAT+AGG | + | chr2_1:6802375-6802394 | Msa0191240:intron | 25.0% |
| ! | GTTATTCAATCAAGTAATGT+TGG | + | chr2_1:6802514-6802533 | Msa0191240:intron | 25.0% |
| !! | ATTTGACATTATTTGCTGAA+GGG | - | chr2_1:6802543-6802562 | None:intergenic | 25.0% |
| !! | TATTTGACATTATTTGCTGA+AGG | - | chr2_1:6802544-6802563 | None:intergenic | 25.0% |
| ! | TACAATGGAAAGTTAATCAT+CGG | - | chr2_1:6803022-6803041 | None:intergenic | 25.0% |
| ! | CAAATATTAGGTAAGTACAA+TGG | - | chr2_1:6803037-6803056 | None:intergenic | 25.0% |
| !! | AACTTTATAATTTGTAGGGT+TGG | + | chr2_1:6803058-6803077 | Msa0191240:intron | 25.0% |
| AATGTATGAAGTTCTTCTAG+AGG | - | chr2_1:6797959-6797978 | None:intergenic | 30.0% | |
| ! | TGCTAGTTTGATGAAGAATT+TGG | - | chr2_1:6798032-6798051 | None:intergenic | 30.0% |
| AATGAAAATAGAGAAGGGAA+AGG | - | chr2_1:6798086-6798105 | None:intergenic | 30.0% | |
| !!! | GGGTTGAGTTTTAGTTTAAT+GGG | + | chr2_1:6798235-6798254 | Msa0191240:intron | 30.0% |
| ! | TTATCTTTTCTACATTGGAG+AGG | + | chr2_1:6798361-6798380 | Msa0191240:intron | 30.0% |
| CTCATTAAGTTCCCAAAAAT+GGG | + | chr2_1:6798465-6798484 | Msa0191240:intron | 30.0% | |
| ACTATTTGTTCCTCATTTCT+TGG | - | chr2_1:6798502-6798521 | None:intergenic | 30.0% | |
| AGAAATGAGGAACAAATAGT+TGG | + | chr2_1:6798502-6798521 | Msa0191240:intron | 30.0% | |
| GAAATGAGGAACAAATAGTT+GGG | + | chr2_1:6798503-6798522 | Msa0191240:intron | 30.0% | |
| AAATGAGGAACAAATAGTTG+GGG | + | chr2_1:6798504-6798523 | Msa0191240:intron | 30.0% | |
| GAATTAAAGTTTAGGTGAGT+TGG | + | chr2_1:6798548-6798567 | Msa0191240:intron | 30.0% | |
| TAAATGTCCAATCTTCCAAA+AGG | - | chr2_1:6798668-6798687 | None:intergenic | 30.0% | |
| AGTGTACTCATCTACTATTT+AGG | + | chr2_1:6798691-6798710 | Msa0191240:intron | 30.0% | |
| CTACAATCAAAGAGGAAATA+TGG | + | chr2_1:6798776-6798795 | Msa0191240:intron | 30.0% | |
| AGTTGTCTTTATGTTGTCTT+GGG | + | chr2_1:6798824-6798843 | Msa0191240:intron | 30.0% | |
| !! | TTTTATGCTTTTTGTGGTTC+TGG | + | chr2_1:6798925-6798944 | Msa0191240:intron | 30.0% |
| TAAGTGATTGGAAATATAGC+CGG | + | chr2_1:6798950-6798969 | Msa0191240:intron | 30.0% | |
| TGAGCAATCATATTTATGGT+GGG | - | chr2_1:6799353-6799372 | None:intergenic | 30.0% | |
| CATGTAAATGCAAAAATACC+AGG | - | chr2_1:6799416-6799435 | None:intergenic | 30.0% | |
| !! | GGTATTTTTGCATTTACATG+TGG | + | chr2_1:6799416-6799435 | Msa0191240:CDS | 30.0% |
| CATGTAATTATACCCATCTT+GGG | - | chr2_1:6799516-6799535 | None:intergenic | 30.0% | |
| ACATGTAATTATACCCATCT+TGG | - | chr2_1:6799517-6799536 | None:intergenic | 30.0% | |
| TTTACGTTCATGATAGTTGA+AGG | + | chr2_1:6799542-6799561 | Msa0191240:CDS | 30.0% | |
| !! | GACCAAATTTTAGGAAACTA+TGG | + | chr2_1:6799648-6799667 | Msa0191240:CDS | 30.0% |
| AGCCATAGTTTCCTAAAATT+TGG | - | chr2_1:6799653-6799672 | None:intergenic | 30.0% | |
| !!! | TCGGTTAAATGCTTTTTCAA+TGG | - | chr2_1:6799837-6799856 | None:intergenic | 30.0% |
| ! | CAAAAATTTCGGGAAGTTTT+CGG | - | chr2_1:6799856-6799875 | None:intergenic | 30.0% |
| TAATCTTAACCACTTAAGAG+CGG | - | chr2_1:6800074-6800093 | None:intergenic | 30.0% | |
| ATAAATGAAGCGGTTCAAAT+GGG | - | chr2_1:6800161-6800180 | None:intergenic | 30.0% | |
| TATAAATGAAGCGGTTCAAA+TGG | - | chr2_1:6800162-6800181 | None:intergenic | 30.0% | |
| TGCGGAAATTATAAATGAAG+CGG | - | chr2_1:6800171-6800190 | None:intergenic | 30.0% | |
| ACAAATCAACAATGTCCAAA+AGG | - | chr2_1:6800434-6800453 | None:intergenic | 30.0% | |
| AGAGAAATTGTTAGTCCATT+TGG | + | chr2_1:6800574-6800593 | Msa0191240:intron | 30.0% | |
| TCTAATAAGCAAGTGTGAAT+CGG | + | chr2_1:6800728-6800747 | Msa0191240:intron | 30.0% | |
| !!! | ATCCTTTTTAAAACAGACTC+TGG | + | chr2_1:6800826-6800845 | Msa0191240:intron | 30.0% |
| GATCATTATTACAAAGACCT+TGG | + | chr2_1:6800935-6800954 | Msa0191240:intron | 30.0% | |
| CAGTAAAATTACTCATACCA+AGG | - | chr2_1:6800955-6800974 | None:intergenic | 30.0% | |
| ACGTCTAAGAAAATTACATG+AGG | - | chr2_1:6801348-6801367 | None:intergenic | 30.0% | |
| ! | CATGTAATTTTCTTAGACGT+AGG | + | chr2_1:6801348-6801367 | Msa0191240:CDS | 30.0% |
| TAGTGATAGGGTAAATTTAC+TGG | + | chr2_1:6801392-6801411 | Msa0191240:CDS | 30.0% | |
| AGAATGTAATTCAGTGATTG+TGG | + | chr2_1:6801587-6801606 | Msa0191240:intron | 30.0% | |
| AGTCAACAACTAGCATAATT+AGG | + | chr2_1:6801725-6801744 | Msa0191240:intron | 30.0% | |
| GTCAACAACTAGCATAATTA+GGG | + | chr2_1:6801726-6801745 | Msa0191240:intron | 30.0% | |
| ! | CATAATTAGGGTATTCTAAC+TGG | + | chr2_1:6801738-6801757 | Msa0191240:intron | 30.0% |
| ACAAAAAGGAAAAAAAGGAG+AGG | - | chr2_1:6801781-6801800 | None:intergenic | 30.0% | |
| AGTAAATCCCTTTCACAAAA+AGG | - | chr2_1:6801795-6801814 | None:intergenic | 30.0% | |
| ATAAAAAGAGATTGTGGTAC+TGG | - | chr2_1:6801851-6801870 | None:intergenic | 30.0% | |
| CAAATGAGTGGTTAGATATA+GGG | - | chr2_1:6801887-6801906 | None:intergenic | 30.0% | |
| TCAAATGAGTGGTTAGATAT+AGG | - | chr2_1:6801888-6801907 | None:intergenic | 30.0% | |
| TGAAAAGGGGTTTAGATTTA+GGG | - | chr2_1:6801923-6801942 | None:intergenic | 30.0% | |
| TTGAAAAGGGGTTTAGATTT+AGG | - | chr2_1:6801924-6801943 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | - | chr2_1:6801936-6801955 | None:intergenic | 30.0% | |
| !! | AATTTGTTAGTTTGGTACCT+TGG | + | chr2_1:6802224-6802243 | Msa0191240:intron | 30.0% |
| !!! | TTTCCTCTTTGTTTTCTAAC+AGG | + | chr2_1:6802639-6802658 | Msa0191240:intron | 30.0% |
| CGTCATAGAGTTAATATTGA+TGG | + | chr2_1:6802754-6802773 | Msa0191240:CDS | 30.0% | |
| AATAATTACCTCAAGAACCA+AGG | - | chr2_1:6802806-6802825 | None:intergenic | 30.0% | |
| TCACATGATATTAAGGAACA+TGG | - | chr2_1:6802842-6802861 | None:intergenic | 30.0% | |
| AAGTTCCAATTCTTCTATGT+TGG | - | chr2_1:6802983-6803002 | None:intergenic | 30.0% | |
| ACAATGGAAAGTTAATCATC+GGG | - | chr2_1:6803021-6803040 | None:intergenic | 30.0% | |
| !!! | GGGGTTGAGTTTTAGTTTAA+TGG | + | chr2_1:6798234-6798253 | Msa0191240:intron | 35.0% |
| TTTGCGTCTGATGTTTGAAT+TGG | + | chr2_1:6798338-6798357 | Msa0191240:intron | 35.0% | |
| GGTTAGATATTTCAGCTGTA+AGG | - | chr2_1:6798446-6798465 | None:intergenic | 35.0% | |
| !! | CCATTTTTGGGAACTTAATG+AGG | - | chr2_1:6798467-6798486 | None:intergenic | 35.0% |
| CCTCATTAAGTTCCCAAAAA+TGG | + | chr2_1:6798464-6798483 | Msa0191240:intron | 35.0% | |
| TTCAAATGCCCTAATTCTTC+CGG | - | chr2_1:6798623-6798642 | None:intergenic | 35.0% | |
| TCTACTATTTAGGCTGTGTT+TGG | + | chr2_1:6798701-6798720 | Msa0191240:intron | 35.0% | |
| CTACTATTTAGGCTGTGTTT+GGG | + | chr2_1:6798702-6798721 | Msa0191240:intron | 35.0% | |
| CAGTTGTCTTTATGTTGTCT+TGG | + | chr2_1:6798823-6798842 | Msa0191240:intron | 35.0% | |
| GTTGTCTTTATGTTGTCTTG+GGG | + | chr2_1:6798825-6798844 | Msa0191240:intron | 35.0% | |
| TAAGCTGGAACAACATATGT+AGG | + | chr2_1:6798860-6798879 | Msa0191240:intron | 35.0% | |
| AATAAATAGAGGCAGATACG+TGG | + | chr2_1:6799070-6799089 | Msa0191240:CDS | 35.0% | |
| ! | TGAAGCACGTAGTTCATTTT+TGG | + | chr2_1:6799175-6799194 | Msa0191240:CDS | 35.0% |
| !! | GAAGCACGTAGTTCATTTTT+GGG | + | chr2_1:6799176-6799195 | Msa0191240:CDS | 35.0% |
| !! | AAGCACGTAGTTCATTTTTG+GGG | + | chr2_1:6799177-6799196 | Msa0191240:CDS | 35.0% |
| ! | AGGGAAAGCTTTAACAAATG+TGG | + | chr2_1:6799209-6799228 | Msa0191240:CDS | 35.0% |
| AAATCTACTACTATCACCAC+TGG | - | chr2_1:6799327-6799346 | None:intergenic | 35.0% | |
| CTGAGCAATCATATTTATGG+TGG | - | chr2_1:6799354-6799373 | None:intergenic | 35.0% | |
| CACCATAAATATGATTGCTC+AGG | + | chr2_1:6799352-6799371 | Msa0191240:CDS | 35.0% | |
| TGCCTGAGCAATCATATTTA+TGG | - | chr2_1:6799357-6799376 | None:intergenic | 35.0% | |
| !! | AAGGTTTTGTCTTATTAGCG+AGG | + | chr2_1:6799561-6799580 | Msa0191240:CDS | 35.0% |
| !! | AGGTTTTGTCTTATTAGCGA+GGG | + | chr2_1:6799562-6799581 | Msa0191240:CDS | 35.0% |
| GGTCCAAAATAATCTGCAAA+CGG | - | chr2_1:6799632-6799651 | None:intergenic | 35.0% | |
| AGGTCCTGCTTTCATAAAAT+GGG | + | chr2_1:6799703-6799722 | Msa0191240:CDS | 35.0% | |
| TTTCATAAAATGGGGTCAGT+GGG | + | chr2_1:6799712-6799731 | Msa0191240:CDS | 35.0% | |
| AATCTTAACCACTTAAGAGC+GGG | - | chr2_1:6800073-6800092 | None:intergenic | 35.0% | |
| TCATTTATAATTTCCGCAGC+TGG | + | chr2_1:6800173-6800192 | Msa0191240:CDS | 35.0% | |
| ! | ATGTTTCTACCAATACAGCA+GGG | - | chr2_1:6800240-6800259 | None:intergenic | 35.0% |
| ! | TATGTTTCTACCAATACAGC+AGG | - | chr2_1:6800241-6800260 | None:intergenic | 35.0% |
| !!! | CGTTATGTTGATGGTTTTCA+AGG | + | chr2_1:6800283-6800302 | Msa0191240:CDS | 35.0% |
| AAATCTGCTCTTGCTCATAT+TGG | + | chr2_1:6800319-6800338 | Msa0191240:CDS | 35.0% | |
| AATCTGCTCTTGCTCATATT+GGG | + | chr2_1:6800320-6800339 | Msa0191240:CDS | 35.0% | |
| !!! | AGTTTTGGATAGAGTCCTTT+TGG | + | chr2_1:6800416-6800435 | Msa0191240:intron | 35.0% |
| !!! | GCACTTGTCATTTTTCCAAA+TGG | - | chr2_1:6800592-6800611 | None:intergenic | 35.0% |
| CTGAGATTGTTTAAGTAGCA+TGG | + | chr2_1:6800615-6800634 | Msa0191240:intron | 35.0% | |
| ACACATAGATATGCATGATC+AGG | + | chr2_1:6800672-6800691 | Msa0191240:intron | 35.0% | |
| !!! | AGCCAGAGTCTGTTTTAAAA+AGG | - | chr2_1:6800831-6800850 | None:intergenic | 35.0% |
| TTGTGTGCAACTGAAACTAT+AGG | + | chr2_1:6800880-6800899 | Msa0191240:intron | 35.0% | |
| TGTGTGCAACTGAAACTATA+GGG | + | chr2_1:6800881-6800900 | Msa0191240:intron | 35.0% | |
| !! | AGCTTTCCTTTTTAAGGGTA+TGG | + | chr2_1:6801009-6801028 | Msa0191240:intron | 35.0% |
| !! | ATTTAAGTTGCAACTGCCAA+TGG | + | chr2_1:6801058-6801077 | Msa0191240:intron | 35.0% |
| !! | TTTAAGTTGCAACTGCCAAT+GGG | + | chr2_1:6801059-6801078 | Msa0191240:intron | 35.0% |
| ! | ACCATGCAATGTTTTCTTTC+AGG | + | chr2_1:6801239-6801258 | Msa0191240:intron | 35.0% |
| ACCTGAAAGAAAACATTGCA+TGG | - | chr2_1:6801243-6801262 | None:intergenic | 35.0% | |
| ! | ATGCAATGTTTTCTTTCAGG+TGG | + | chr2_1:6801242-6801261 | Msa0191240:intron | 35.0% |
| ATCCTGGGAATATTCTTGTT+CGG | + | chr2_1:6801289-6801308 | Msa0191240:CDS | 35.0% | |
| ACAGAATTGTCCTAATCCAA+AGG | + | chr2_1:6801485-6801504 | Msa0191240:CDS | 35.0% | |
| TCAATGAAAGCCTTTGGATT+AGG | - | chr2_1:6801498-6801517 | None:intergenic | 35.0% | |
| TAATCCAAAGGCTTTCATTG+AGG | + | chr2_1:6801497-6801516 | Msa0191240:CDS | 35.0% | |
| ATTACCTCAATGAAAGCCTT+TGG | - | chr2_1:6801504-6801523 | None:intergenic | 35.0% | |
| GGAAAAAAAGGAGAGGAATT+TGG | - | chr2_1:6801774-6801793 | None:intergenic | 35.0% | |
| AATGTGAAAAAAGCAAAGGG+AGG | + | chr2_1:6802113-6802132 | Msa0191240:intron | 35.0% | |
| TGCACATTTATCTGCGTTTA+AGG | - | chr2_1:6802303-6802322 | None:intergenic | 35.0% | |
| !!! | CTGTCTCACATAGTTTTGTT+TGG | + | chr2_1:6802330-6802349 | Msa0191240:intron | 35.0% |
| !!! | TCTCACATAGTTTTGTTTGG+TGG | + | chr2_1:6802333-6802352 | Msa0191240:intron | 35.0% |
| !!! | CTCACATAGTTTTGTTTGGT+GGG | + | chr2_1:6802334-6802353 | Msa0191240:intron | 35.0% |
| CTTCCTGTTAGAAAACAAAG+AGG | - | chr2_1:6802645-6802664 | None:intergenic | 35.0% | |
| !!! | CTTTGTTTTCTAACAGGAAG+TGG | + | chr2_1:6802645-6802664 | Msa0191240:intron | 35.0% |
| !!! | TGGAAGAGGCATTTACTTTT+TGG | + | chr2_1:6802665-6802684 | Msa0191240:CDS | 35.0% |
| !!! | GGAAGAGGCATTTACTTTTT+GGG | + | chr2_1:6802666-6802685 | Msa0191240:CDS | 35.0% |
| !!! | GAAGAGGCATTTACTTTTTG+GGG | + | chr2_1:6802667-6802686 | Msa0191240:CDS | 35.0% |
| AGCAATTACTTGAGAAAGTC+AGG | + | chr2_1:6802731-6802750 | Msa0191240:CDS | 35.0% | |
| ! | TGGTAATGTTTGTACTGTCA+TGG | + | chr2_1:6802774-6802793 | Msa0191240:CDS | 35.0% |
| TTGTGCCAACATAGAAGAAT+TGG | + | chr2_1:6802975-6802994 | Msa0191240:intron | 35.0% | |
| GACCTTTCTTACACAATTGA+TGG | + | chr2_1:6803156-6803175 | Msa0191240:CDS | 35.0% | |
| GTCCATCAATTGTGTAAGAA+AGG | - | chr2_1:6803161-6803180 | None:intergenic | 35.0% | |
| !! | TTACACAATTGATGGACTCA+TGG | + | chr2_1:6803164-6803183 | Msa0191240:CDS | 35.0% |
| AAAAAACCTCCCTCTAATCA+AGG | - | chr2_1:6803192-6803211 | None:intergenic | 35.0% | |
| !!! | GAGGTTTTTTTCCGTTGTTA+AGG | + | chr2_1:6803202-6803221 | Msa0191240:three_prime_UTR | 35.0% |
| TTTCTCAAGAGCCTTAACAA+CGG | - | chr2_1:6803216-6803235 | None:intergenic | 35.0% | |
| ! | TTAGGACACTGAGATGTTTT+GGG | - | chr2_1:6803258-6803277 | None:intergenic | 35.0% |
| AAAACATCTCAGTGTCCTAA+GGG | + | chr2_1:6803258-6803277 | Msa0191240:three_prime_UTR | 35.0% | |
| GATGAACCAAGAAAGGAATT+GGG | + | chr2_1:6803456-6803475 | Msa0191240:three_prime_UTR | 35.0% | |
| CAAATTCCCAATTCCTTTCT+TGG | - | chr2_1:6803465-6803484 | None:intergenic | 35.0% | |
| ! | GTATGAAGTTCTTCTAGAGG+CGG | - | chr2_1:6797956-6797975 | None:intergenic | 40.0% |
| TCACCAATCGCACAAAACTA+AGG | + | chr2_1:6797984-6798003 | Msa0191240:five_prime_UTR | 40.0% | |
| AAGGAGAGAGATTTCACCTT+GGG | - | chr2_1:6798067-6798086 | None:intergenic | 40.0% | |
| AAAGGAGAGAGATTTCACCT+TGG | - | chr2_1:6798068-6798087 | None:intergenic | 40.0% | |
| ! | TTCAACTTCTTGTCGCCTTT+TGG | + | chr2_1:6798650-6798669 | Msa0191240:intron | 40.0% |
| !! | GTGGTTCTGGTTTAAGTGAT+TGG | + | chr2_1:6798938-6798957 | Msa0191240:intron | 40.0% |
| TACGTGGAAGTGAGTAGAAA+TGG | + | chr2_1:6799086-6799105 | Msa0191240:CDS | 40.0% | |
| ACGTGGAAGTGAGTAGAAAT+GGG | + | chr2_1:6799087-6799106 | Msa0191240:CDS | 40.0% | |
| ACTTATACGGCATGTAGAAC+CGG | - | chr2_1:6799148-6799167 | None:intergenic | 40.0% | |
| !!! | ATTTTTGGGGCTTGCAACAA+GGG | + | chr2_1:6799190-6799209 | Msa0191240:CDS | 40.0% |
| ! | TTTTCCACGCAATCTGAGAA+TGG | - | chr2_1:6799283-6799302 | None:intergenic | 40.0% |
| ATTCTCAGATTGCGTGGAAA+AGG | + | chr2_1:6799282-6799301 | Msa0191240:CDS | 40.0% | |
| !! | TACAGAAAGTACTGTTCCAG+TGG | + | chr2_1:6799308-6799327 | Msa0191240:CDS | 40.0% |
| ! | TTTGACTCGCTCTTATTTGC+TGG | + | chr2_1:6799388-6799407 | Msa0191240:CDS | 40.0% |
| TATACAATCCTTCCTGTGGT+TGG | - | chr2_1:6799487-6799506 | None:intergenic | 40.0% | |
| ATTCACTCCAACCATTGTGA+TGG | + | chr2_1:6799604-6799623 | Msa0191240:CDS | 40.0% | |
| TTCACTCCAACCATTGTGAT+GGG | + | chr2_1:6799605-6799624 | Msa0191240:CDS | 40.0% | |
| ! | GGACCGTTTGCAGATTATTT+TGG | + | chr2_1:6799626-6799645 | Msa0191240:CDS | 40.0% |
| CATCGAACACTAGAAAAAGC+AGG | + | chr2_1:6799683-6799702 | Msa0191240:CDS | 40.0% | |
| CAGGTCCTGCTTTCATAAAA+TGG | + | chr2_1:6799702-6799721 | Msa0191240:CDS | 40.0% | |
| GGTCCTGCTTTCATAAAATG+GGG | + | chr2_1:6799704-6799723 | Msa0191240:CDS | 40.0% | |
| ! | TGACCCCATTTTATGAAAGC+AGG | - | chr2_1:6799710-6799729 | None:intergenic | 40.0% |
| CTTTCATAAAATGGGGTCAG+TGG | + | chr2_1:6799711-6799730 | Msa0191240:CDS | 40.0% | |
| AGATCTCGAGGAAAAAGATC+AGG | - | chr2_1:6799749-6799768 | None:intergenic | 40.0% | |
| !! | AGTGGTTTTGCTTGTTTACC+AGG | - | chr2_1:6799953-6799972 | None:intergenic | 40.0% |
| TGGTAAACAAGCAAAACCAC+TGG | + | chr2_1:6799952-6799971 | Msa0191240:CDS | 40.0% | |
| TAAACAAGCAAAACCACTGG+TGG | + | chr2_1:6799955-6799974 | Msa0191240:CDS | 40.0% | |
| TGTGGGAGAATCAATCAGAA+GGG | + | chr2_1:6800003-6800022 | Msa0191240:CDS | 40.0% | |
| TTATAATTTCCGCAGCTGGA+AGG | + | chr2_1:6800177-6800196 | Msa0191240:CDS | 40.0% | |
| AGTGTCTCACGTTATGTTGA+TGG | + | chr2_1:6800274-6800293 | Msa0191240:CDS | 40.0% | |
| !! | TGCACTTTTGAAGATGCTTC+TGG | + | chr2_1:6800348-6800367 | Msa0191240:CDS | 40.0% |
| CTGAAACTATAGGGTGGTAT+AGG | + | chr2_1:6800890-6800909 | Msa0191240:intron | 40.0% | |
| CTGGATCCATACCCTTAAAA+AGG | - | chr2_1:6801018-6801037 | None:intergenic | 40.0% | |
| ATTCATGCAGATATGCATCC+TGG | + | chr2_1:6801273-6801292 | Msa0191240:CDS | 40.0% | |
| TTCATGCAGATATGCATCCT+GGG | + | chr2_1:6801274-6801293 | Msa0191240:CDS | 40.0% | |
| TCCTGGGAATATTCTTGTTC+GGG | + | chr2_1:6801290-6801309 | Msa0191240:CDS | 40.0% | |
| ! | TGAACTCTCTGGTAGTGATA+GGG | + | chr2_1:6801380-6801399 | Msa0191240:CDS | 40.0% |
| ACGTCAAACAGAGGAACAAA+GGG | - | chr2_1:6801637-6801656 | None:intergenic | 40.0% | |
| ACGACATAACATGTGAACAG+AGG | - | chr2_1:6801664-6801683 | None:intergenic | 40.0% | |
| CTTGAGAGGAACACACAAAA+AGG | - | chr2_1:6801707-6801726 | None:intergenic | 40.0% | |
| !! | ATGCTAGTTGTTGACTTGAG+AGG | - | chr2_1:6801721-6801740 | None:intergenic | 40.0% |
| TGAGTGGTTAGATATAGGGA+CGG | - | chr2_1:6801883-6801902 | None:intergenic | 40.0% | |
| AGCAAAGGGAGGTTACATTA+AGG | + | chr2_1:6802124-6802143 | Msa0191240:intron | 40.0% | |
| GCAAAGGGAGGTTACATTAA+GGG | + | chr2_1:6802125-6802144 | Msa0191240:intron | 40.0% | |
| ! | TTGTTAGTTTGGTACCTTGG+AGG | + | chr2_1:6802227-6802246 | Msa0191240:intron | 40.0% |
| TGATTTATTGTGCATGGCTG+TGG | + | chr2_1:6802425-6802444 | Msa0191240:intron | 40.0% | |
| ATCGTGCAAGATCATAGTCA+AGG | - | chr2_1:6802608-6802627 | None:intergenic | 40.0% | |
| TTTCTAACAGGAAGTGGAAG+AGG | + | chr2_1:6802651-6802670 | Msa0191240:intron | 40.0% | |
| ATGAACTATGTCACCTTCTG+GGG | - | chr2_1:6802695-6802714 | None:intergenic | 40.0% | |
| GATGAACTATGTCACCTTCT+GGG | - | chr2_1:6802696-6802715 | None:intergenic | 40.0% | |
| GGTGTGGTCACATGATATTA+AGG | - | chr2_1:6802849-6802868 | None:intergenic | 40.0% | |
| ! | CATTGGCTGACTGAAAACTA+GGG | + | chr2_1:6802882-6802901 | Msa0191240:intron | 40.0% |
| ! | TTTGCTGCTTAGAGCTGATT+GGG | + | chr2_1:6803128-6803147 | Msa0191240:CDS | 40.0% |
| ! | TAGGACACTGAGATGTTTTG+GGG | - | chr2_1:6803257-6803276 | None:intergenic | 40.0% |
| ! | CTTAGGACACTGAGATGTTT+TGG | - | chr2_1:6803259-6803278 | None:intergenic | 40.0% |
| CAAAACATCTCAGTGTCCTA+AGG | + | chr2_1:6803257-6803276 | Msa0191240:three_prime_UTR | 40.0% | |
| ATTCCTTTCTTGGTTCATCG+TGG | - | chr2_1:6803455-6803474 | None:intergenic | 40.0% | |
| CGATGAACCAAGAAAGGAAT+TGG | + | chr2_1:6803455-6803474 | Msa0191240:three_prime_UTR | 40.0% | |
| !!! | GAGCCTTAGTTTTGTGCGAT+TGG | - | chr2_1:6797990-6798009 | None:intergenic | 45.0% |
| AGCATGTTCTCTTACTCCCA+AGG | + | chr2_1:6798048-6798067 | Msa0191240:five_prime_UTR | 45.0% | |
| AAGTTCCCAAAAATGGGCAG+TGG | + | chr2_1:6798471-6798490 | Msa0191240:intron | 45.0% | |
| !! | AGTCTCCACTGCCCATTTTT+GGG | - | chr2_1:6798479-6798498 | None:intergenic | 45.0% |
| AGTGGAGACTCCAAGAAATG+AGG | + | chr2_1:6798489-6798508 | Msa0191240:intron | 45.0% | |
| ! | AAGTTTAGGTGAGTTGGGTC+TGG | + | chr2_1:6798554-6798573 | Msa0191240:intron | 45.0% |
| ! | AGTTTAGGTGAGTTGGGTCT+GGG | + | chr2_1:6798555-6798574 | Msa0191240:intron | 45.0% |
| ! | GAGCATTGCCGGAAGAATTA+GGG | + | chr2_1:6798612-6798631 | Msa0191240:intron | 45.0% |
| !! | CTTGTCGCCTTTTGGAAGAT+TGG | + | chr2_1:6798658-6798677 | Msa0191240:intron | 45.0% |
| GGGAGCTTATTGAGATAAGC+TGG | + | chr2_1:6798845-6798864 | Msa0191240:intron | 45.0% | |
| TAGAAATGGGCCAATTGTCC+CGG | + | chr2_1:6799100-6799119 | Msa0191240:CDS | 45.0% | |
| !!! | CATTTTTGGGGCTTGCAACA+AGG | + | chr2_1:6799189-6799208 | Msa0191240:CDS | 45.0% |
| CGCATATACAATCCTTCCTG+TGG | - | chr2_1:6799491-6799510 | None:intergenic | 45.0% | |
| TTGTATATGCGTGCCCAAGA+TGG | + | chr2_1:6799500-6799519 | Msa0191240:CDS | 45.0% | |
| TGTATATGCGTGCCCAAGAT+GGG | + | chr2_1:6799501-6799520 | Msa0191240:CDS | 45.0% | |
| CTAGTGTTCGATGAACAACG+CGG | - | chr2_1:6799676-6799695 | None:intergenic | 45.0% | |
| GTGTAGCTGAAACTATGCTC+AGG | - | chr2_1:6799806-6799825 | None:intergenic | 45.0% | |
| GAAGAGATTCCTGTTGCATC+TGG | + | chr2_1:6799884-6799903 | Msa0191240:CDS | 45.0% | |
| TAATGTAGCACGGTGCACTT+GGG | - | chr2_1:6799918-6799937 | None:intergenic | 45.0% | |
| TTAATGTAGCACGGTGCACT+TGG | - | chr2_1:6799919-6799938 | None:intergenic | 45.0% | |
| ACCAGGATGTCTAACCTTCA+CGG | - | chr2_1:6799984-6800003 | None:intergenic | 45.0% | |
| AAGGTTAGACATCCTGGTGT+GGG | + | chr2_1:6799986-6800005 | Msa0191240:CDS | 45.0% | |
| GTGTGGGAGAATCAATCAGA+AGG | + | chr2_1:6800002-6800021 | Msa0191240:CDS | 45.0% | |
| CTTAAGAGCGGGAATGAACA+TGG | - | chr2_1:6800062-6800081 | None:intergenic | 45.0% | |
| TGTTCATTCCCGCTCTTAAG+TGG | + | chr2_1:6800062-6800081 | Msa0191240:CDS | 45.0% | |
| TTCCCTAGCAAGGTCAACTT+GGG | - | chr2_1:6800134-6800153 | None:intergenic | 45.0% | |
| AAGAAACATCCTTCCAGCTG+CGG | - | chr2_1:6800189-6800208 | None:intergenic | 45.0% | |
| CAAGTGGATAGACAGGCTTA+GGG | - | chr2_1:6800213-6800232 | None:intergenic | 45.0% | |
| ACAAGTGGATAGACAGGCTT+AGG | - | chr2_1:6800214-6800233 | None:intergenic | 45.0% | |
| GCTCTTCGTTGGGATTAGAA+AGG | + | chr2_1:6800854-6800873 | Msa0191240:intron | 45.0% | |
| GTGCAACTGAAACTATAGGG+TGG | + | chr2_1:6800884-6800903 | Msa0191240:intron | 45.0% | |
| ! | TTTAAGGGTATGGATCCAGC+TGG | + | chr2_1:6801019-6801038 | Msa0191240:intron | 45.0% |
| ! | TCACTCTCTAAAAGTCCAGC+TGG | - | chr2_1:6801037-6801056 | None:intergenic | 45.0% |
| CCTGGGAATATTCTTGTTCG+GGG | + | chr2_1:6801291-6801310 | Msa0191240:CDS | 45.0% | |
| ! | CTGAACTCTCTGGTAGTGAT+AGG | + | chr2_1:6801379-6801398 | Msa0191240:CDS | 45.0% |
| ! | TTTTCAAATCTGTTGCCCGC+CGG | + | chr2_1:6801418-6801437 | Msa0191240:CDS | 45.0% |
| CAGAGGAACAAAGGGAAGAA+GGG | - | chr2_1:6801629-6801648 | None:intergenic | 45.0% | |
| ACAGAGGAACAAAGGGAAGA+AGG | - | chr2_1:6801630-6801649 | None:intergenic | 45.0% | |
| CACGTCAAACAGAGGAACAA+AGG | - | chr2_1:6801638-6801657 | None:intergenic | 45.0% | |
| CTTTGTTCCTCTGTTTGACG+TGG | + | chr2_1:6801636-6801655 | Msa0191240:intron | 45.0% | |
| AAAGGTTCAGCGAGGAAACA+AGG | - | chr2_1:6801689-6801708 | None:intergenic | 45.0% | |
| ACACACAAAAAGGTTCAGCG+AGG | - | chr2_1:6801697-6801716 | None:intergenic | 45.0% | |
| AAAAGGAGAGGAATTTGGCC+TGG | - | chr2_1:6801769-6801788 | None:intergenic | 45.0% | |
| TGGTTAGATATAGGGACGGA+GGG | - | chr2_1:6801879-6801898 | None:intergenic | 45.0% | |
| AGGGAGGTTACATTAAGGGA+CGG | + | chr2_1:6802129-6802148 | Msa0191240:intron | 45.0% | |
| AGGTTACATTAAGGGACGGA+GGG | + | chr2_1:6802133-6802152 | Msa0191240:intron | 45.0% | |
| GGATGAACTATGTCACCTTC+TGG | - | chr2_1:6802697-6802716 | None:intergenic | 45.0% | |
| ATGCTTGTAACTGGTAGGTG+TGG | - | chr2_1:6802865-6802884 | None:intergenic | 45.0% | |
| CACCTACCAGTTACAAGCAT+TGG | + | chr2_1:6802865-6802884 | Msa0191240:intron | 45.0% | |
| AGCCAATGCTTGTAACTGGT+AGG | - | chr2_1:6802870-6802889 | None:intergenic | 45.0% | |
| AGTCAGCCAATGCTTGTAAC+TGG | - | chr2_1:6802874-6802893 | None:intergenic | 45.0% | |
| !! | GCATTGGCTGACTGAAAACT+AGG | + | chr2_1:6802881-6802900 | Msa0191240:intron | 45.0% |
| ! | CTTTGCTGCTTAGAGCTGAT+TGG | + | chr2_1:6803127-6803146 | Msa0191240:CDS | 45.0% |
| ACTCATGGCTCCTTGATTAG+AGG | + | chr2_1:6803179-6803198 | Msa0191240:exon | 45.0% | |
| CTCATGGCTCCTTGATTAGA+GGG | + | chr2_1:6803180-6803199 | Msa0191240:exon | 45.0% | |
| !! | AGGACACTGAGATGTTTTGG+GGG | - | chr2_1:6803256-6803275 | None:intergenic | 45.0% |
| CAAAGAAACGGCAGTCTTGA+GGG | - | chr2_1:6803286-6803305 | None:intergenic | 45.0% | |
| ACAAAGAAACGGCAGTCTTG+AGG | - | chr2_1:6803287-6803306 | None:intergenic | 45.0% | |
| ! | GAGTCTCCACTGCCCATTTT+TGG | - | chr2_1:6798480-6798499 | None:intergenic | 50.0% |
| ! | GTTTAGGTGAGTTGGGTCTG+GGG | + | chr2_1:6798556-6798575 | Msa0191240:intron | 50.0% |
| TTGGGTCTGGGGATTTACGA+GGG | + | chr2_1:6798567-6798586 | Msa0191240:intron | 50.0% | |
| ! | CTCAAGAGTTCGAGCATTGC+CGG | + | chr2_1:6798601-6798620 | Msa0191240:intron | 50.0% |
| ! | CGAGCATTGCCGGAAGAATT+AGG | + | chr2_1:6798611-6798630 | Msa0191240:intron | 50.0% |
| TTTGGTCCAACCGGGACAAT+TGG | - | chr2_1:6799113-6799132 | None:intergenic | 50.0% | |
| ! | TGGTGGGTATTTGGTCCAAC+CGG | - | chr2_1:6799122-6799141 | None:intergenic | 50.0% |
| CACACCATTCTCAGATTGCG+TGG | + | chr2_1:6799276-6799295 | Msa0191240:CDS | 50.0% | |
| ! | CGCTCTTATTTGCTGGTACC+TGG | + | chr2_1:6799395-6799414 | Msa0191240:CDS | 50.0% |
| TTGCATTCTCCCAGCGAAGT+TGG | + | chr2_1:6799444-6799463 | Msa0191240:CDS | 50.0% | |
| TGCATTCTCCCAGCGAAGTT+GGG | + | chr2_1:6799445-6799464 | Msa0191240:CDS | 50.0% | |
| TGCAGAACGTTTCCAACCAC+AGG | + | chr2_1:6799472-6799491 | Msa0191240:CDS | 50.0% | |
| GAACGTTTCCAACCACAGGA+AGG | + | chr2_1:6799476-6799495 | Msa0191240:CDS | 50.0% | |
| AACGGTCCCATCACAATGGT+TGG | - | chr2_1:6799614-6799633 | None:intergenic | 50.0% | |
| TGCAAACGGTCCCATCACAA+TGG | - | chr2_1:6799618-6799637 | None:intergenic | 50.0% | |
| AAAAAGATCAGGCCGCGTAG+CGG | - | chr2_1:6799738-6799757 | None:intergenic | 50.0% | |
| AGCTGAGTGCATAGATCTCG+AGG | - | chr2_1:6799761-6799780 | None:intergenic | 50.0% | |
| GCAATGCTTCCAGATGCAAC+AGG | - | chr2_1:6799896-6799915 | None:intergenic | 50.0% | |
| GAAGGTTAGACATCCTGGTG+TGG | + | chr2_1:6799985-6800004 | Msa0191240:CDS | 50.0% | |
| ! | CTGATTGATTCTCCCACACC+AGG | - | chr2_1:6800001-6800020 | None:intergenic | 50.0% |
| ! | TGTCCCAAGTTGACCTTGCT+AGG | + | chr2_1:6800128-6800147 | Msa0191240:CDS | 50.0% |
| ! | GTCCCAAGTTGACCTTGCTA+GGG | + | chr2_1:6800129-6800148 | Msa0191240:CDS | 50.0% |
| CTTCCCTAGCAAGGTCAACT+TGG | - | chr2_1:6800135-6800154 | None:intergenic | 50.0% | |
| AATACAGCAGGGTGCACAAG+TGG | - | chr2_1:6800229-6800248 | None:intergenic | 50.0% | |
| ACTTGTGCACCCTGCTGTAT+TGG | + | chr2_1:6800228-6800247 | Msa0191240:CDS | 50.0% | |
| CCCCGAACAAGAATATTCCC+AGG | - | chr2_1:6801294-6801313 | None:intergenic | 50.0% | |
| TTTCAAATCTGTTGCCCGCC+GGG | + | chr2_1:6801419-6801438 | Msa0191240:CDS | 50.0% | |
| AATGTGAGCAGTGAGCCTAC+AGG | - | chr2_1:6801561-6801580 | None:intergenic | 50.0% | |
| AGAGGAACCACGTCAAACAG+AGG | - | chr2_1:6801646-6801665 | None:intergenic | 50.0% | |
| GTATTCTAACTGGGCCAACC+AGG | + | chr2_1:6801748-6801767 | Msa0191240:intron | 50.0% | |
| GTGGTTAGATATAGGGACGG+AGG | - | chr2_1:6801880-6801899 | None:intergenic | 50.0% | |
| GAGGTTACATTAAGGGACGG+AGG | + | chr2_1:6802132-6802151 | Msa0191240:intron | 50.0% | |
| GTTTGGTACCTTGGAGGCTT+TGG | + | chr2_1:6802233-6802252 | Msa0191240:intron | 50.0% | |
| GAATCAGTCCAAAGCCTCCA+AGG | - | chr2_1:6802244-6802263 | None:intergenic | 50.0% | |
| AGTTCATCCTGCAGAGTGCA+TGG | + | chr2_1:6802708-6802727 | Msa0191240:CDS | 50.0% | |
| AATTGCTCCATGCACTCTGC+AGG | - | chr2_1:6802718-6802737 | None:intergenic | 50.0% | |
| ! | TACTGTCATGGTGACGACCT+TGG | + | chr2_1:6802786-6802805 | Msa0191240:CDS | 50.0% |
| GCTTAGAGCTGATTGGGCAA+AGG | + | chr2_1:6803134-6803153 | Msa0191240:CDS | 50.0% | |
| ATGGCTCCTTGATTAGAGGG+AGG | + | chr2_1:6803183-6803202 | Msa0191240:exon | 50.0% | |
| GTTGGGTCTGGGGATTTACG+AGG | + | chr2_1:6798566-6798585 | Msa0191240:intron | 55.0% | |
| CGGCAATGCTCGAACTCTTG+AGG | - | chr2_1:6798603-6798622 | None:intergenic | 55.0% | |
| AATGGGCCAATTGTCCCGGT+TGG | + | chr2_1:6799104-6799123 | Msa0191240:CDS | 55.0% | |
| GGTGGGTATTTGGTCCAACC+GGG | - | chr2_1:6799121-6799140 | None:intergenic | 55.0% | |
| GACCAAATACCCACCACTGC+CGG | + | chr2_1:6799126-6799145 | Msa0191240:CDS | 55.0% | |
| !! | AACCGGCAGTGGTGGGTATT+TGG | - | chr2_1:6799131-6799150 | None:intergenic | 55.0% |
| CATGTAGAACCGGCAGTGGT+GGG | - | chr2_1:6799138-6799157 | None:intergenic | 55.0% | |
| GATTGCTCAGGCAGTGAGCT+TGG | + | chr2_1:6799364-6799383 | Msa0191240:CDS | 55.0% | |
| GCATTCTCCCAGCGAAGTTG+GGG | + | chr2_1:6799446-6799465 | Msa0191240:CDS | 55.0% | |
| TGCATCTCCCCAACTTCGCT+GGG | - | chr2_1:6799456-6799475 | None:intergenic | 55.0% | |
| GCCGTGAAGGTTAGACATCC+TGG | + | chr2_1:6799980-6799999 | Msa0191240:CDS | 55.0% | |
| AATGGGCAGCTTCCCTAGCA+AGG | - | chr2_1:6800144-6800163 | None:intergenic | 55.0% | |
| GGGTGCACAAGTGGATAGAC+AGG | - | chr2_1:6800220-6800239 | None:intergenic | 55.0% | |
| TCTGGCTGTCGCTCTTCGTT+GGG | + | chr2_1:6800844-6800863 | Msa0191240:intron | 55.0% | |
| GGCATGACTGCTGAACTCTC+TGG | + | chr2_1:6801369-6801388 | Msa0191240:CDS | 55.0% | |
| ACTGAGTGCGCATTCTGCAG+CGG | - | chr2_1:6801454-6801473 | None:intergenic | 55.0% | |
| GGAGAGGAATTTGGCCTGGT+TGG | - | chr2_1:6801765-6801784 | None:intergenic | 55.0% | |
| !!! | ACTTTTTGGGGCACCCCAGA+AGG | + | chr2_1:6802679-6802698 | Msa0191240:CDS | 55.0% |
| ! | GGTGACGACCTTGGTTCTTG+AGG | + | chr2_1:6802795-6802814 | Msa0191240:CDS | 55.0% |
| TGGCAGCGAAAGCTTGATCC+TGG | + | chr2_1:6803078-6803097 | Msa0191240:CDS | 55.0% | |
| GGCAGCGAAAGCTTGATCCT+GGG | + | chr2_1:6803079-6803098 | Msa0191240:CDS | 55.0% | |
| GTCTGCATCACATCGTACCC+AGG | - | chr2_1:6803099-6803118 | None:intergenic | 55.0% | |
| GCGCCACGATGAACCAAGAA+AGG | + | chr2_1:6803449-6803468 | Msa0191240:three_prime_UTR | 55.0% | |
| GCATGTAGAACCGGCAGTGG+TGG | - | chr2_1:6799139-6799158 | None:intergenic | 60.0% | |
| ACGGCATGTAGAACCGGCAG+TGG | - | chr2_1:6799142-6799161 | None:intergenic | 60.0% | |
| CTGCATCTCCCCAACTTCGC+TGG | - | chr2_1:6799457-6799476 | None:intergenic | 60.0% | |
| ACCACTGGTGGTTGCCGTGA+AGG | + | chr2_1:6799967-6799986 | Msa0191240:CDS | 60.0% | |
| ACCTTCACGGCAACCACCAG+TGG | - | chr2_1:6799971-6799990 | None:intergenic | 60.0% | |
| CTCTGGCTGTCGCTCTTCGT+TGG | + | chr2_1:6800843-6800862 | Msa0191240:intron | 60.0% | |
| AAATCTGTTGCCCGCCGGGA+TGG | + | chr2_1:6801423-6801442 | Msa0191240:CDS | 60.0% | |
| GTGCGCATTCTGCAGCGGTA+CGG | - | chr2_1:6801449-6801468 | None:intergenic | 60.0% | |
| GCAGTCTTGAGGGAGCCCTT+AGG | - | chr2_1:6803276-6803295 | None:intergenic | 60.0% | |
| CTGCAGCGGTACGGCCATCC+CGG | - | chr2_1:6801440-6801459 | None:intergenic | 70.0% | |
| GGGGTCAGTGGGCCGCTACG+CGG | + | chr2_1:6799723-6799742 | Msa0191240:CDS | 75.0% | |
| AGCGGTACGGCCATCCCGGC+GGG | - | chr2_1:6801436-6801455 | None:intergenic | 75.0% | |
| CAGCGGTACGGCCATCCCGG+CGG | - | chr2_1:6801437-6801456 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 6797922 | 6803539 | 6797922 | ID=Msa0191240;Name=Msa0191240 |
| chr2_1 | mRNA | 6797922 | 6803539 | 6797922 | ID=Msa0191240-mRNA-1;Parent=Msa0191240;Name=Msa0191240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=155|1|1|1|0.75|0.6|5|345|624 |
| chr2_1 | exon | 6797922 | 6798069 | 6797922 | ID=Msa0191240-mRNA-1:exon:3094;Parent=Msa0191240-mRNA-1 |
| chr2_1 | exon | 6799022 | 6800369 | 6799022 | ID=Msa0191240-mRNA-1:exon:3095;Parent=Msa0191240-mRNA-1 |
| chr2_1 | exon | 6801261 | 6801518 | 6801261 | ID=Msa0191240-mRNA-1:exon:3096;Parent=Msa0191240-mRNA-1 |
| chr2_1 | exon | 6802661 | 6802816 | 6802661 | ID=Msa0191240-mRNA-1:exon:3097;Parent=Msa0191240-mRNA-1 |
| chr2_1 | exon | 6803075 | 6803539 | 6803075 | ID=Msa0191240-mRNA-1:exon:3098;Parent=Msa0191240-mRNA-1 |
| chr2_1 | five_prime_UTR | 6797922 | 6798069 | 6797922 | ID=Msa0191240-mRNA-1:five_prime_utr;Parent=Msa0191240-mRNA-1 |
| chr2_1 | five_prime_UTR | 6799022 | 6799028 | 6799022 | ID=Msa0191240-mRNA-1:five_prime_utr;Parent=Msa0191240-mRNA-1 |
| chr2_1 | CDS | 6799029 | 6800369 | 6799029 | ID=Msa0191240-mRNA-1:cds;Parent=Msa0191240-mRNA-1 |
| chr2_1 | CDS | 6801261 | 6801518 | 6801261 | ID=Msa0191240-mRNA-1:cds;Parent=Msa0191240-mRNA-1 |
| chr2_1 | CDS | 6802661 | 6802816 | 6802661 | ID=Msa0191240-mRNA-1:cds;Parent=Msa0191240-mRNA-1 |
| chr2_1 | CDS | 6803075 | 6803194 | 6803075 | ID=Msa0191240-mRNA-1:cds;Parent=Msa0191240-mRNA-1 |
| chr2_1 | three_prime_UTR | 6803195 | 6803539 | 6803195 | ID=Msa0191240-mRNA-1:three_prime_utr;Parent=Msa0191240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
