AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0829610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829610 MtrunA17_Chr2g0281061 98.558 624 9 0 1 624 1 624 0.0 1285
Msa0829610 MtrunA17_Chr4g0048521 75.598 627 148 2 1 624 6 630 0.0 978
Msa0829610 MtrunA17_Chr8g0360981 59.008 605 224 5 31 624 31 622 0.0 718
Msa0829610 MtrunA17_Chr3g0120791 29.206 315 194 7 214 523 203 493 2.76e-32 132
Msa0829610 MtrunA17_Chr3g0129101 29.605 304 188 7 211 508 200 483 3.05e-29 123
Msa0829610 MtrunA17_Chr8g0382921 28.667 300 188 7 211 504 191 470 3.41e-27 117
Msa0829610 MtrunA17_Chr3g0136721 24.427 393 263 8 221 600 141 512 7.44e-25 109
Msa0829610 MtrunA17_Chr6g0465161 27.273 385 246 8 218 598 132 486 1.61e-23 105
Msa0829610 MtrunA17_Chr4g0012061 27.425 299 184 6 224 514 161 434 1.54e-22 102
Msa0829610 MtrunA17_Chr5g0428451 25.948 343 228 8 213 550 126 447 7.22e-22 99.8
Msa0829610 MtrunA17_Chr1g0148121 28.269 283 179 6 216 494 132 394 4.30e-21 97.8
Msa0829610 MtrunA17_Chr1g0147481 26.667 345 203 11 192 508 86 408 2.19e-19 92.8
Msa0829610 MtrunA17_Chr1g0199921 26.923 338 211 7 217 539 202 518 5.90e-19 91.3
Msa0829610 MtrunA17_Chr1g0169361 25.342 292 194 6 218 508 187 455 8.76e-19 90.9
Msa0829610 MtrunA17_Chr4g0057941 27.414 321 189 10 226 529 79 372 1.82e-18 88.6
Msa0829610 MtrunA17_Chr3g0113361 27.500 320 192 12 224 524 96 394 1.39e-17 86.3
Msa0829610 MtrunA17_Chr7g0230671 26.761 284 189 6 226 508 151 416 1.74e-17 86.7
Msa0829610 MtrunA17_Chr5g0433911 25.965 285 188 8 229 510 77 341 8.00e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829610 AT1G11390.1 72.172 557 143 4 71 624 77 624 0.0 851
Msa0829610 AT1G61640.1 64.991 557 190 4 71 624 67 621 0.0 750
Msa0829610 AT1G61640.3 63.514 518 184 4 71 585 67 582 0.0 676
Msa0829610 AT1G61640.2 57.527 372 155 2 71 441 67 436 2.97e-149 440
Msa0829610 AT3G07700.3 29.393 313 194 7 214 523 192 480 4.23e-30 126
Msa0829610 AT3G07700.1 29.393 313 194 7 214 523 192 480 4.59e-30 126
Msa0829610 AT3G07700.2 29.393 313 194 7 214 523 192 480 4.59e-30 126
Msa0829610 AT3G07700.4 29.393 313 194 7 214 523 192 480 4.59e-30 126
Msa0829610 AT5G64940.1 29.276 304 189 7 211 508 215 498 2.08e-28 121
Msa0829610 AT5G64940.2 29.276 304 189 7 211 508 215 498 2.08e-28 121
Msa0829610 AT5G24970.2 25.618 445 269 12 186 600 148 560 1.50e-26 115
Msa0829610 AT5G24970.3 25.618 445 269 12 186 600 109 521 1.56e-26 115
Msa0829610 AT1G79600.1 29.110 292 188 6 218 508 150 423 5.76e-26 113
Msa0829610 AT5G24970.1 25.169 445 268 13 186 600 109 518 1.78e-23 105
Msa0829610 AT1G65950.2 29.730 296 186 8 177 463 53 335 2.45e-23 103
Msa0829610 AT1G65950.1 29.730 296 186 8 177 463 53 335 4.34e-23 103
Msa0829610 AT1G71810.1 25.654 382 256 7 218 598 123 477 2.23e-21 99.4
Msa0829610 AT4G24810.6 27.628 333 190 10 218 527 25 329 3.82e-20 94.0
Msa0829610 AT4G24810.1 27.628 333 190 10 218 527 25 329 3.82e-20 94.0
Msa0829610 AT4G24810.4 27.900 319 181 9 218 515 25 315 4.04e-20 92.0
Msa0829610 AT4G24810.2 27.164 335 193 9 218 529 68 374 4.24e-20 94.4
Msa0829610 AT4G24810.5 29.352 293 158 9 218 489 25 289 1.13e-19 90.9
Msa0829610 AT5G50330.1 25.872 344 212 10 226 550 76 395 1.26e-19 92.8
Msa0829610 AT4G31390.1 27.365 296 175 8 216 499 168 435 1.31e-19 93.6
Msa0829610 AT3G24190.1 25.581 301 193 8 211 508 191 463 1.59e-19 93.6
Msa0829610 AT4G24810.3 27.193 342 191 11 218 529 25 338 5.04e-19 90.5
Msa0829610 AT2G39190.2 22.388 402 272 8 217 599 201 581 1.83e-18 90.1
Msa0829610 AT5G05200.1 23.907 343 235 8 213 550 127 448 9.01e-18 87.4
Msa0829610 AT5G24810.1 26.861 309 184 8 216 508 100 382 2.39e-16 83.6
Msa0829610 AT2G40090.1 25.817 306 195 12 224 514 98 386 2.14e-13 73.6
Msa0829610 AT5G24810.2 25.588 340 180 10 216 508 100 413 5.07e-13 73.2
Msa0829610 AT5G50330.2 23.547 344 204 10 226 550 76 379 6.33e-13 71.6
Msa0829610 AT4G31390.3 25.475 263 156 8 249 499 2 236 1.14e-11 67.8
Msa0829610 AT2G39190.1 27.108 166 112 2 217 382 201 357 3.99e-11 65.5

Find 170 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTCCCAATTCCTTTCT+TGG 0.184162 5_4:-2655827 None:intergenic
GGACCGTTTGCAGATTATTT+TGG 0.196932 5_4:+2651995 Msa0829610:CDS
TGCTAGTTTGATGAAGAATT+TGG 0.231329 5_4:-2650397 None:intergenic
TGCCTGAGCAATCATATTTA+TGG 0.231958 5_4:-2651723 None:intergenic
CTTAGGACACTGAGATGTTT+TGG 0.237086 5_4:-2655627 None:intergenic
AAATCTGCTCTTGCTCATAT+TGG 0.237300 5_4:+2652688 Msa0829610:CDS
AGCCATAGTTTCCTAAAATT+TGG 0.244909 5_4:-2652019 None:intergenic
CAGGTCCTGCTTTCATAAAA+TGG 0.265236 5_4:+2652071 Msa0829610:CDS
TCCTGGGAATATTCTTGTTC+GGG 0.277946 5_4:+2653660 Msa0829610:CDS
AAATGAATTTCTTGGGCCTT+AGG 0.287922 5_4:+2650278 None:intergenic
GACCTTTCTTACACAATTGA+TGG 0.297388 5_4:+2655527 Msa0829610:CDS
TTTGACTCGCTCTTATTTGC+TGG 0.307748 5_4:+2651757 Msa0829610:CDS
CGATGAACCAAGAAAGGAAT+TGG 0.316206 5_4:+2655820 Msa0829610:three_prime_UTR
GGATGAACTATGTCACCTTC+TGG 0.327276 5_4:-2655064 None:intergenic
AATCTGCTCTTGCTCATATT+GGG 0.336729 5_4:+2652689 Msa0829610:CDS
TCAATGAAAGCCTTTGGATT+AGG 0.336903 5_4:-2653865 None:intergenic
CTGCATCTCCCCAACTTCGC+TGG 0.337075 5_4:-2651823 None:intergenic
GCTTCATTATGAAACTTATA+CGG 0.339442 5_4:-2651527 None:intergenic
CTGAACTCTCTGGTAGTGAT+AGG 0.345467 5_4:+2653749 Msa0829610:CDS
ATTACCTCAATGAAAGCCTT+TGG 0.353972 5_4:-2653871 None:intergenic
ATCCTGGGAATATTCTTGTT+CGG 0.355681 5_4:+2653659 Msa0829610:CDS
TGCATTCTCCCAGCGAAGTT+GGG 0.356054 5_4:+2651814 Msa0829610:CDS
AGTGTCTCACGTTATGTTGA+TGG 0.359513 5_4:+2652643 Msa0829610:CDS
TAGTGATAGGGTAAATTTAC+TGG 0.362630 5_4:+2653762 Msa0829610:CDS
CGCTCTTATTTGCTGGTACC+TGG 0.380022 5_4:+2651764 Msa0829610:CDS
TACGTGGAAGTGAGTAGAAA+TGG 0.384419 5_4:+2651455 Msa0829610:CDS
CTTTGCTGCTTAGAGCTGAT+TGG 0.385374 5_4:+2655498 Msa0829610:CDS
TATAAATGAAGCGGTTCAAA+TGG 0.389020 5_4:-2652528 None:intergenic
TTGAAAATTAAACAAAATAC+AGG 0.391296 5_4:-2655710 None:intergenic
AATGAATTTCTTGGGCCTTA+GGG 0.393088 5_4:+2650279 None:intergenic
AGGTCCTGCTTTCATAAAAT+GGG 0.393124 5_4:+2652072 Msa0829610:CDS
TGGTGGGTATTTGGTCCAAC+CGG 0.393551 5_4:-2651488 None:intergenic
ACATGTAATTATACCCATCT+TGG 0.394243 5_4:-2651883 None:intergenic
ACAAGTGGATAGACAGGCTT+AGG 0.396500 5_4:-2652580 None:intergenic
AACCGGCAGTGGTGGGTATT+TGG 0.401639 5_4:-2651497 None:intergenic
GATGAACTATGTCACCTTCT+GGG 0.406064 5_4:-2655063 None:intergenic
CTTCCCTAGCAAGGTCAACT+TGG 0.407373 5_4:-2652501 None:intergenic
TTTGCTGCTTAGAGCTGATT+GGG 0.407859 5_4:+2655499 Msa0829610:CDS
ACTCATGGCTCCTTGATTAG+AGG 0.412428 5_4:+2655550 Msa0829610:exon
GAAGAGATTCCTGTTGCATC+TGG 0.418717 5_4:+2652253 Msa0829610:CDS
TTTGGTCCAACCGGGACAAT+TGG 0.420166 5_4:-2651479 None:intergenic
CGTCATAGAGTTAATATTGA+TGG 0.434073 5_4:+2655124 Msa0829610:CDS
TTTACGTTCATGATAGTTGA+AGG 0.437184 5_4:+2651911 Msa0829610:CDS
ATTGGTAGAAACATATGAAA+AGG 0.438740 5_4:+2652615 Msa0829610:CDS
ACTTGTGCACCCTGCTGTAT+TGG 0.440205 5_4:+2652597 Msa0829610:CDS
TCATTTATAATTTCCGCAGC+TGG 0.441166 5_4:+2652542 Msa0829610:CDS
TGGCAGCGAAAGCTTGATCC+TGG 0.443745 5_4:+2655449 Msa0829610:CDS
CAAAGAAACGGCAGTCTTGA+GGG 0.445001 5_4:-2655654 None:intergenic
TTTCAAATCTGTTGCCCGCC+GGG 0.446800 5_4:+2653789 Msa0829610:CDS
ATTCATGCAGATATGCATCC+TGG 0.451986 5_4:+2653643 Msa0829610:CDS
ACTTATACGGCATGTAGAAC+CGG 0.458097 5_4:-2651514 None:intergenic
ATTCTCAGATTGCGTGGAAA+AGG 0.458269 5_4:+2651651 Msa0829610:CDS
AAATCTGTTGCCCGCCGGGA+TGG 0.459158 5_4:+2653793 Msa0829610:CDS
TTGGTAGAAACATATGAAAA+GGG 0.459990 5_4:+2652616 Msa0829610:CDS
AGCAATTACTTGAGAAAGTC+AGG 0.463123 5_4:+2655101 Msa0829610:CDS
CACCATAAATATGATTGCTC+AGG 0.470184 5_4:+2651721 Msa0829610:CDS
GTCCATCAATTGTGTAAGAA+AGG 0.470237 5_4:-2655529 None:intergenic
TTGCATTCTCCCAGCGAAGT+TGG 0.471522 5_4:+2651813 Msa0829610:CDS
CAAAACATCTCAGTGTCCTA+AGG 0.474278 5_4:+2655628 Msa0829610:three_prime_UTR
TTAATGTAGCACGGTGCACT+TGG 0.476026 5_4:-2652285 None:intergenic
TGCATCTCCCCAACTTCGCT+GGG 0.476786 5_4:-2651822 None:intergenic
CATGTAATTATACCCATCTT+GGG 0.480516 5_4:-2651882 None:intergenic
TGTTCATTCCCGCTCTTAAG+TGG 0.482039 5_4:+2652431 Msa0829610:CDS
GATTGCTCAGGCAGTGAGCT+TGG 0.483437 5_4:+2651733 Msa0829610:CDS
TATGTTTCTACCAATACAGC+AGG 0.484385 5_4:-2652607 None:intergenic
TTGTATATGCGTGCCCAAGA+TGG 0.484797 5_4:+2651869 Msa0829610:CDS
AGCGGTACGGCCATCCCGGC+GGG 0.489699 5_4:-2653803 None:intergenic
TGTCCCAAGTTGACCTTGCT+AGG 0.497358 5_4:+2652497 Msa0829610:CDS
ACATTAAAATATCGTTATCC+TGG 0.498375 5_4:+2652301 Msa0829610:CDS
TTACACAATTGATGGACTCA+TGG 0.498739 5_4:+2655535 Msa0829610:CDS
AATTGCTCCATGCACTCTGC+AGG 0.499228 5_4:-2655085 None:intergenic
GCCGTGAAGGTTAGACATCC+TGG 0.500885 5_4:+2652349 Msa0829610:CDS
TTTCTAACAGGAAGTGGAAG+AGG 0.501398 5_4:+2655021 Msa0829610:intron
CTGATTGATTCTCCCACACC+AGG 0.506024 5_4:-2652367 None:intergenic
ACCACTGGTGGTTGCCGTGA+AGG 0.510120 5_4:+2652336 Msa0829610:CDS
ACAAAGAAACGGCAGTCTTG+AGG 0.512689 5_4:-2655655 None:intergenic
ACCAGGATGTCTAACCTTCA+CGG 0.516286 5_4:-2652350 None:intergenic
GACCAAATACCCACCACTGC+CGG 0.518056 5_4:+2651495 Msa0829610:CDS
TATACAATCCTTCCTGTGGT+TGG 0.519758 5_4:-2651853 None:intergenic
TCACCAATCGCACAAAACTA+AGG 0.519983 5_4:+2650352 Msa0829610:five_prime_UTR
CTGCAGCGGTACGGCCATCC+CGG 0.520825 5_4:-2653807 None:intergenic
AACGGTCCCATCACAATGGT+TGG 0.522108 5_4:-2651980 None:intergenic
GCAGTCTTGAGGGAGCCCTT+AGG 0.525030 5_4:-2655644 None:intergenic
CTCATGGCTCCTTGATTAGA+GGG 0.527193 5_4:+2655551 Msa0829610:exon
GGGTGCACAAGTGGATAGAC+AGG 0.530159 5_4:-2652586 None:intergenic
GATGAACCAAGAAAGGAATT+GGG 0.531211 5_4:+2655821 Msa0829610:three_prime_UTR
ACGTGGAAGTGAGTAGAAAT+GGG 0.531630 5_4:+2651456 Msa0829610:CDS
ATTCACTCCAACCATTGTGA+TGG 0.532321 5_4:+2651973 Msa0829610:CDS
TGTATATGCGTGCCCAAGAT+GGG 0.535161 5_4:+2651870 Msa0829610:CDS
GGTGACGACCTTGGTTCTTG+AGG 0.535537 5_4:+2655165 Msa0829610:CDS
TGCAGAACGTTTCCAACCAC+AGG 0.535550 5_4:+2651841 Msa0829610:CDS
TCCGTTCATAAAATAAATAG+AGG 0.535725 5_4:+2651428 Msa0829610:CDS
AAATCTACTACTATCACCAC+TGG 0.538008 5_4:-2651693 None:intergenic
CTTAAGAGCGGGAATGAACA+TGG 0.538208 5_4:-2652428 None:intergenic
TAGAAATGGGCCAATTGTCC+CGG 0.538260 5_4:+2651469 Msa0829610:CDS
GCGCCACGATGAACCAAGAA+AGG 0.540549 5_4:+2655814 Msa0829610:three_prime_UTR
GGCATGACTGCTGAACTCTC+TGG 0.542426 5_4:+2653739 Msa0829610:CDS
AGTTCATCCTGCAGAGTGCA+TGG 0.544535 5_4:+2655078 Msa0829610:CDS
AATCTTAACCACTTAAGAGC+GGG 0.544613 5_4:-2652439 None:intergenic
ATAAATGAAGCGGTTCAAAT+GGG 0.546042 5_4:-2652527 None:intergenic
GCATGTAGAACCGGCAGTGG+TGG 0.550140 5_4:-2651505 None:intergenic
TTCACTCCAACCATTGTGAT+GGG 0.551609 5_4:+2651974 Msa0829610:CDS
TAATCCAAAGGCTTTCATTG+AGG 0.552069 5_4:+2653867 Msa0829610:CDS
GCATTCTCCCAGCGAAGTTG+GGG 0.555043 5_4:+2651815 Msa0829610:CDS
CACACCATTCTCAGATTGCG+TGG 0.555938 5_4:+2651645 Msa0829610:CDS
GTGCGCATTCTGCAGCGGTA+CGG 0.556512 5_4:-2653816 None:intergenic
TACTGTCATGGTGACGACCT+TGG 0.558128 5_4:+2655156 Msa0829610:CDS
GCAATGCTTCCAGATGCAAC+AGG 0.562469 5_4:-2652262 None:intergenic
AATGGGCCAATTGTCCCGGT+TGG 0.564966 5_4:+2651473 Msa0829610:CDS
TTCCCTAGCAAGGTCAACTT+GGG 0.566297 5_4:-2652500 None:intergenic
GTGTAGCTGAAACTATGCTC+AGG 0.567262 5_4:-2652172 None:intergenic
CTGAGCAATCATATTTATGG+TGG 0.567808 5_4:-2651720 None:intergenic
TTCATGCAGATATGCATCCT+GGG 0.568436 5_4:+2653644 Msa0829610:CDS
CTTTCATAAAATGGGGTCAG+TGG 0.569229 5_4:+2652080 Msa0829610:CDS
ATGAACTATGTCACCTTCTG+GGG 0.571340 5_4:-2655062 None:intergenic
ACCTTCACGGCAACCACCAG+TGG 0.571742 5_4:-2652337 None:intergenic
AGGGAAAGCTTTAACAAATG+TGG 0.575031 5_4:+2651578 Msa0829610:CDS
GGTCCAAAATAATCTGCAAA+CGG 0.575702 5_4:-2651998 None:intergenic
CATGTAGAACCGGCAGTGGT+GGG 0.575943 5_4:-2651504 None:intergenic
TTATAATTTCCGCAGCTGGA+AGG 0.578670 5_4:+2652546 Msa0829610:CDS
GTGTGGGAGAATCAATCAGA+AGG 0.581866 5_4:+2652371 Msa0829610:CDS
AAATCATATAAGAAACCCTA+AGG 0.582382 5_4:-2650294 None:intergenic
TGGTAATGTTTGTACTGTCA+TGG 0.583589 5_4:+2655144 Msa0829610:CDS
CCCCGAACAAGAATATTCCC+AGG 0.587079 5_4:-2653661 None:intergenic
GGTGGGTATTTGGTCCAACC+GGG 0.587788 5_4:-2651487 None:intergenic
AATACAGCAGGGTGCACAAG+TGG 0.588357 5_4:-2652595 None:intergenic
GTCCCAAGTTGACCTTGCTA+GGG 0.588745 5_4:+2652498 Msa0829610:CDS
AATGGGCAGCTTCCCTAGCA+AGG 0.589522 5_4:-2652510 None:intergenic
CAGCGGTACGGCCATCCCGG+CGG 0.593776 5_4:-2653804 None:intergenic
TGAACTCTCTGGTAGTGATA+GGG 0.595798 5_4:+2653750 Msa0829610:CDS
TAATGTAGCACGGTGCACTT+GGG 0.600061 5_4:-2652284 None:intergenic
GGCAGCGAAAGCTTGATCCT+GGG 0.600800 5_4:+2655450 Msa0829610:CDS
AAGGTTAGACATCCTGGTGT+GGG 0.602666 5_4:+2652355 Msa0829610:CDS
AGCTGAGTGCATAGATCTCG+AGG 0.605437 5_4:-2652127 None:intergenic
ACGGCATGTAGAACCGGCAG+TGG 0.607529 5_4:-2651508 None:intergenic
TTTCATAAAATGGGGTCAGT+GGG 0.608104 5_4:+2652081 Msa0829610:CDS
TGAAAATTAAACAAAATACA+GGG 0.608528 5_4:-2655709 None:intergenic
AAAACATCTCAGTGTCCTAA+GGG 0.610534 5_4:+2655629 Msa0829610:three_prime_UTR
AATGTATGAAGTTCTTCTAG+AGG 0.614261 5_4:-2650324 None:intergenic
GCTTAGAGCTGATTGGGCAA+AGG 0.614729 5_4:+2655505 Msa0829610:CDS
AGCATGTTCTCTTACTCCCA+AGG 0.614917 5_4:+2650416 Msa0829610:five_prime_UTR
ACAGAATTGTCCTAATCCAA+AGG 0.616547 5_4:+2653855 Msa0829610:CDS
GGGGTCAGTGGGCCGCTACG+CGG 0.616757 5_4:+2652092 Msa0829610:CDS
AAGAAACATCCTTCCAGCTG+CGG 0.618231 5_4:-2652555 None:intergenic
ATTCCTTTCTTGGTTCATCG+TGG 0.619033 5_4:-2655817 None:intergenic
GTCTGCATCACATCGTACCC+AGG 0.619350 5_4:-2655467 None:intergenic
TGCGGAAATTATAAATGAAG+CGG 0.620081 5_4:-2652537 None:intergenic
TACAGAAAGTACTGTTCCAG+TGG 0.620946 5_4:+2651677 Msa0829610:CDS
CGCATATACAATCCTTCCTG+TGG 0.621310 5_4:-2651857 None:intergenic
GAAGGTTAGACATCCTGGTG+TGG 0.621587 5_4:+2652354 Msa0829610:CDS
CAAGTGGATAGACAGGCTTA+GGG 0.625206 5_4:-2652579 None:intergenic
ATGGCTCCTTGATTAGAGGG+AGG 0.627887 5_4:+2655554 Msa0829610:exon
TGGTAAACAAGCAAAACCAC+TGG 0.628724 5_4:+2652321 Msa0829610:CDS
AATAATTACCTCAAGAACCA+AGG 0.630120 5_4:-2655173 None:intergenic
TGAGCAATCATATTTATGGT+GGG 0.639230 5_4:-2651719 None:intergenic
GAACGTTTCCAACCACAGGA+AGG 0.642315 5_4:+2651845 Msa0829610:CDS
CCTGGGAATATTCTTGTTCG+GGG 0.646006 5_4:+2653661 Msa0829610:CDS
GTATGAAGTTCTTCTAGAGG+CGG 0.648018 5_4:-2650321 None:intergenic
AATAAATAGAGGCAGATACG+TGG 0.651014 5_4:+2651439 Msa0829610:CDS
TGCAAACGGTCCCATCACAA+TGG 0.656016 5_4:-2651984 None:intergenic
TAATCTTAACCACTTAAGAG+CGG 0.658895 5_4:-2652440 None:intergenic
ACTGAGTGCGCATTCTGCAG+CGG 0.662239 5_4:-2653821 None:intergenic
GGTCCTGCTTTCATAAAATG+GGG 0.673913 5_4:+2652073 Msa0829610:CDS
GAAAATTAAACAAAATACAG+GGG 0.674782 5_4:-2655708 None:intergenic
TTTCTCAAGAGCCTTAACAA+CGG 0.679204 5_4:-2655584 None:intergenic
ACGTCTAAGAAAATTACATG+AGG 0.681342 5_4:-2653715 None:intergenic
TGTGGGAGAATCAATCAGAA+GGG 0.688516 5_4:+2652372 Msa0829610:CDS
TAAACAAGCAAAACCACTGG+TGG 0.694708 5_4:+2652324 Msa0829610:CDS
ATGTTTCTACCAATACAGCA+GGG 0.721417 5_4:-2652606 None:intergenic
CTAGTGTTCGATGAACAACG+CGG 0.805665 5_4:-2652042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTATTCTAG+CGG + chr5_4:2653451-2653470 Msa0829610:intron 10.0%
!! ATTATAAAGTTACAAATATT+AGG - chr5_4:2655420-2655439 None:intergenic 10.0%
!! TTAAAAAAAAAACAAAGAAA+CGG - chr5_4:2655669-2655688 None:intergenic 10.0%
!!! TTTGTAATAGATATTTGTTA+TGG + chr5_4:2650521-2650540 Msa0829610:intron 15.0%
!! TTCAAAATTGTCAAAAATTT+CGG - chr5_4:2652236-2652255 None:intergenic 15.0%
!! ATAAAAAAAAAAAATCCCAT+TGG - chr5_4:2653446-2653465 None:intergenic 15.0%
!!! AAAAAATGTTTTAGATTTAG+AGG - chr5_4:2653520-2653539 None:intergenic 15.0%
!!! TAAAACATTTTTTGTATCTA+CGG + chr5_4:2653527-2653546 Msa0829610:intron 15.0%
!! TTTAATACATATACAAACAA+AGG + chr5_4:2654397-2654416 Msa0829610:intron 15.0%
!! AATTCTTCACATATAAATAT+AGG - chr5_4:2654737-2654756 None:intergenic 15.0%
!! AATCATTTAAATCTACAATT+AGG - chr5_4:2654780-2654799 None:intergenic 15.0%
!! GAATATAAAATAAGAAATGA+TGG - chr5_4:2654835-2654854 None:intergenic 15.0%
!!! TTTGTAACTTTATAATTTGT+AGG + chr5_4:2655424-2655443 Msa0829610:intron 15.0%
!!! TTGTAACTTTATAATTTGTA+GGG + chr5_4:2655425-2655444 Msa0829610:intron 15.0%
!! TGAAAATTAAACAAAATACA+GGG - chr5_4:2655712-2655731 None:intergenic 15.0%
!! TTGAAAATTAAACAAAATAC+AGG - chr5_4:2655713-2655732 None:intergenic 15.0%
!! TAAAAATGCTATATTATTGT+TGG + chr5_4:2655854-2655873 Msa0829610:three_prime_UTR 15.0%
!!! TCTATTTTCATTTGCATTTT+TGG + chr5_4:2650462-2650481 Msa0829610:intron 20.0%
!!! CTATTTTCATTTGCATTTTT+GGG + chr5_4:2650463-2650482 Msa0829610:intron 20.0%
!!! TATTTTCATTTGCATTTTTG+GGG + chr5_4:2650464-2650483 Msa0829610:intron 20.0%
!! ATATTCGTTTATTTGATCAT+AGG + chr5_4:2650553-2650572 Msa0829610:intron 20.0%
!!! AAAATCTAGACTTTTCTTTA+TGG + chr5_4:2650582-2650601 Msa0829610:intron 20.0%
!!! AAATCTAGACTTTTCTTTAT+GGG + chr5_4:2650583-2650602 Msa0829610:intron 20.0%
!!! TATATGCTTTTTCAATTCTA+TGG + chr5_4:2650678-2650697 Msa0829610:intron 20.0%
!!! TTTTTGGTGAATTAAAGTTT+AGG + chr5_4:2650909-2650928 Msa0829610:intron 20.0%
!! TGGGTTATTAGATAAAATTA+AGG + chr5_4:2651090-2651109 Msa0829610:intron 20.0%
!! TAAAATTAGATTTGCATCAA+GGG - chr5_4:2651279-2651298 None:intergenic 20.0%
!! ATAAAATTAGATTTGCATCA+AGG - chr5_4:2651280-2651299 None:intergenic 20.0%
!!! ATCTAATTTTATGCTTTTTG+TGG + chr5_4:2651288-2651307 Msa0829610:intron 20.0%
!!! AATGTTTTGATAACATAATC+CGG - chr5_4:2651341-2651360 None:intergenic 20.0%
!!! ATTATTTTGGACCAAATTTT+AGG + chr5_4:2652008-2652027 Msa0829610:CDS 20.0%
!! TCAAAATTGTCAAAAATTTC+GGG - chr5_4:2652235-2652254 None:intergenic 20.0%
!!! ATAAAAACGAAGTGTTATAA+AGG + chr5_4:2652831-2652850 Msa0829610:intron 20.0%
!! TCAAAAAAAATTACATTGTG+AGG - chr5_4:2652861-2652880 None:intergenic 20.0%
!! ATTAGATAAACAAGTTATCT+TGG - chr5_4:2653083-2653102 None:intergenic 20.0%
!!! ATATTTAGCTTTCCTTTTTA+AGG + chr5_4:2653372-2653391 Msa0829610:intron 20.0%
!!! TATTTAGCTTTCCTTTTTAA+GGG + chr5_4:2653373-2653392 Msa0829610:intron 20.0%
!! TTAAAATTACTGCTTACAAA+GGG - chr5_4:2653561-2653580 None:intergenic 20.0%
!!! TTTAAAATTACTGCTTACAA+AGG - chr5_4:2653562-2653581 None:intergenic 20.0%
!!! GTAAGCAGTAATTTTAAATT+TGG + chr5_4:2653564-2653583 Msa0829610:intron 20.0%
!! AAAAAATCGATAATCTAAGT+TGG - chr5_4:2653906-2653925 None:intergenic 20.0%
!!! TTTTTTTCCTTTTTGTGAAA+GGG + chr5_4:2654155-2654174 Msa0829610:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - chr5_4:2654354-2654373 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG - chr5_4:2654355-2654374 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG - chr5_4:2654356-2654375 None:intergenic 20.0%
!! TTTAAATGATTTATTGTGCA+TGG + chr5_4:2654789-2654808 Msa0829610:intron 20.0%
!! GAAAATTAAACAAAATACAG+GGG - chr5_4:2655711-2655730 None:intergenic 20.0%
!!! CAATAATATAGCATTTTTAC+AGG - chr5_4:2655853-2655872 None:intergenic 20.0%
! AAATCATATAAGAAACCCTA+AGG - chr5_4:2650297-2650316 None:intergenic 25.0%
! ATGCAAATGAAAATAGAGAA+GGG - chr5_4:2650459-2650478 None:intergenic 25.0%
! AATGCAAATGAAAATAGAGA+AGG - chr5_4:2650460-2650479 None:intergenic 25.0%
!!! ATTTTCATTTGCATTTTTGG+GGG + chr5_4:2650465-2650484 Msa0829610:intron 25.0%
!! AATCTAGACTTTTCTTTATG+GGG + chr5_4:2650584-2650603 Msa0829610:intron 25.0%
!! ATTGGTTATCTTTTCTACAT+TGG + chr5_4:2650725-2650744 Msa0829610:intron 25.0%
!!! GGGCATTTATTGATTTTTTT+TGG + chr5_4:2650893-2650912 Msa0829610:intron 25.0%
! AATTAAAGTTTAGGTGAGTT+GGG + chr5_4:2650918-2650937 Msa0829610:intron 25.0%
!!! AGTTATTTCTACAATCAAAG+AGG + chr5_4:2651137-2651156 Msa0829610:intron 25.0%
!!! ATTTATTTTATGAACGGACT+GGG - chr5_4:2651426-2651445 None:intergenic 25.0%
!!! TATTTATTTTATGAACGGAC+TGG - chr5_4:2651427-2651446 None:intergenic 25.0%
! TCCGTTCATAAAATAAATAG+AGG + chr5_4:2651428-2651447 Msa0829610:CDS 25.0%
!!! GCCTCTATTTATTTTATGAA+CGG - chr5_4:2651432-2651451 None:intergenic 25.0%
! GCTTCATTATGAAACTTATA+CGG - chr5_4:2651530-2651549 None:intergenic 25.0%
!!! AACGATATTTTAATGTAGCA+CGG - chr5_4:2652297-2652316 None:intergenic 25.0%
! ACATTAAAATATCGTTATCC+TGG + chr5_4:2652301-2652320 Msa0829610:CDS 25.0%
!!! GGATTTTGCTATTATCAATA+CGG + chr5_4:2652393-2652412 Msa0829610:CDS 25.0%
! ATTGGTAGAAACATATGAAA+AGG + chr5_4:2652615-2652634 Msa0829610:CDS 25.0%
! TTGGTAGAAACATATGAAAA+GGG + chr5_4:2652616-2652635 Msa0829610:CDS 25.0%
!! ACATTGCTATCATATAGTTT+TGG + chr5_4:2652770-2652789 Msa0829610:intron 25.0%
!!! GGATTGATGAATGAATTTTT+TGG + chr5_4:2653005-2653024 Msa0829610:intron 25.0%
! CTATATCTTGACAAAGAAAA+CGG - chr5_4:2653165-2653184 None:intergenic 25.0%
! GTAACAAATAACAGATATCT+GGG - chr5_4:2653482-2653501 None:intergenic 25.0%
! TGTAACAAATAACAGATATC+TGG - chr5_4:2653483-2653502 None:intergenic 25.0%
!!! TTATCGATTTTTTTTCCTGT+AGG + chr5_4:2653913-2653932 Msa0829610:intron 25.0%
!! ATAATTAGGGTATTCTAACT+GGG + chr5_4:2654109-2654128 Msa0829610:intron 25.0%
! CTTTCACAAAAAGGAAAAAA+AGG - chr5_4:2654156-2654175 None:intergenic 25.0%
!!! CTTTTTTTCCTTTTTGTGAA+AGG + chr5_4:2654154-2654173 Msa0829610:intron 25.0%
! AAAAACTAAAGTTTAACTGC+AGG - chr5_4:2654195-2654214 None:intergenic 25.0%
! GAGTATATAAAAAGAGATTG+TGG - chr5_4:2654227-2654246 None:intergenic 25.0%
! CAAAAATAAAGTCAAATGAG+TGG - chr5_4:2654269-2654288 None:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+GGG - chr5_4:2654307-2654326 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG - chr5_4:2654308-2654327 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr5_4:2654344-2654363 None:intergenic 25.0%
! TATACAAACAAAGGACAATA+TGG + chr5_4:2654406-2654425 Msa0829610:intron 25.0%
! AAGAAATGTGAAAAAAGCAA+AGG + chr5_4:2654479-2654498 Msa0829610:intron 25.0%
! AGAAATGTGAAAAAAGCAAA+GGG + chr5_4:2654480-2654499 Msa0829610:intron 25.0%
!!! TGCGTTAAAATTTGTTAGTT+TGG + chr5_4:2654586-2654605 Msa0829610:intron 25.0%
! TTTAAATCTGCGTCAAATAT+AGG - chr5_4:2654636-2654655 None:intergenic 25.0%
! ATGTGAAGAATTACTGTAAT+AGG + chr5_4:2654745-2654764 Msa0829610:intron 25.0%
! GTTATTCAATCAAGTAATGT+TGG + chr5_4:2654884-2654903 Msa0829610:intron 25.0%
!! ATTTGACATTATTTGCTGAA+GGG - chr5_4:2654913-2654932 None:intergenic 25.0%
!! TATTTGACATTATTTGCTGA+AGG - chr5_4:2654914-2654933 None:intergenic 25.0%
! TACAATGGAAAGTTAATCAT+CGG - chr5_4:2655393-2655412 None:intergenic 25.0%
! CAAATATTAGGTAAGTACAA+TGG - chr5_4:2655408-2655427 None:intergenic 25.0%
!! AACTTTATAATTTGTAGGGT+TGG + chr5_4:2655429-2655448 Msa0829610:intron 25.0%
AATGTATGAAGTTCTTCTAG+AGG - chr5_4:2650327-2650346 None:intergenic 30.0%
! TGCTAGTTTGATGAAGAATT+TGG - chr5_4:2650400-2650419 None:intergenic 30.0%
AATGAAAATAGAGAAGGGAA+AGG - chr5_4:2650454-2650473 None:intergenic 30.0%
!!! GGGTTGAGTTTTAGTTTAAT+GGG + chr5_4:2650604-2650623 Msa0829610:intron 30.0%
! TTATCTTTTCTACATTGGAG+AGG + chr5_4:2650730-2650749 Msa0829610:intron 30.0%
CTCATTAAGTTCCCAAAAAT+GGG + chr5_4:2650834-2650853 Msa0829610:intron 30.0%
ACTATTTGTTCCTCATTTCT+TGG - chr5_4:2650871-2650890 None:intergenic 30.0%
AGAAATGAGGAACAAATAGT+TGG + chr5_4:2650871-2650890 Msa0829610:intron 30.0%
GAAATGAGGAACAAATAGTT+GGG + chr5_4:2650872-2650891 Msa0829610:intron 30.0%
AAATGAGGAACAAATAGTTG+GGG + chr5_4:2650873-2650892 Msa0829610:intron 30.0%
GAATTAAAGTTTAGGTGAGT+TGG + chr5_4:2650917-2650936 Msa0829610:intron 30.0%
TAAATGTCCAATCTTCCAAA+AGG - chr5_4:2651037-2651056 None:intergenic 30.0%
AGTGTACTCATCTACTATTT+AGG + chr5_4:2651060-2651079 Msa0829610:intron 30.0%
CTACAATCAAAGAGGAAATA+TGG + chr5_4:2651145-2651164 Msa0829610:intron 30.0%
AGTTGTCTTTATGTTGTCTT+GGG + chr5_4:2651193-2651212 Msa0829610:intron 30.0%
!! TTTTATGCTTTTTGTGGTTC+TGG + chr5_4:2651294-2651313 Msa0829610:intron 30.0%
TAAGTGATTGGAAATATAGC+CGG + chr5_4:2651319-2651338 Msa0829610:intron 30.0%
TGAGCAATCATATTTATGGT+GGG - chr5_4:2651722-2651741 None:intergenic 30.0%
CATGTAAATGCAAAAATACC+AGG - chr5_4:2651785-2651804 None:intergenic 30.0%
!! GGTATTTTTGCATTTACATG+TGG + chr5_4:2651785-2651804 Msa0829610:CDS 30.0%
CATGTAATTATACCCATCTT+GGG - chr5_4:2651885-2651904 None:intergenic 30.0%
ACATGTAATTATACCCATCT+TGG - chr5_4:2651886-2651905 None:intergenic 30.0%
TTTACGTTCATGATAGTTGA+AGG + chr5_4:2651911-2651930 Msa0829610:CDS 30.0%
!! GACCAAATTTTAGGAAACTA+TGG + chr5_4:2652017-2652036 Msa0829610:CDS 30.0%
AGCCATAGTTTCCTAAAATT+TGG - chr5_4:2652022-2652041 None:intergenic 30.0%
!!! TCGGTTAAATGCTTTTTCAA+TGG - chr5_4:2652206-2652225 None:intergenic 30.0%
! CAAAAATTTCGGGAAGTTTT+CGG - chr5_4:2652225-2652244 None:intergenic 30.0%
TAATCTTAACCACTTAAGAG+CGG - chr5_4:2652443-2652462 None:intergenic 30.0%
ATAAATGAAGCGGTTCAAAT+GGG - chr5_4:2652530-2652549 None:intergenic 30.0%
TATAAATGAAGCGGTTCAAA+TGG - chr5_4:2652531-2652550 None:intergenic 30.0%
TGCGGAAATTATAAATGAAG+CGG - chr5_4:2652540-2652559 None:intergenic 30.0%
ACAAATCAACAATGTCCAAA+AGG - chr5_4:2652803-2652822 None:intergenic 30.0%
AGAGAAATTGTTAGTCCATT+TGG + chr5_4:2652943-2652962 Msa0829610:intron 30.0%
TCTAATAAGCAAGTGTGAAT+CGG + chr5_4:2653097-2653116 Msa0829610:intron 30.0%
!!! ATCCTTTTTAAAACAGACTC+TGG + chr5_4:2653195-2653214 Msa0829610:intron 30.0%
GATCATTATTACAAAGACCT+TGG + chr5_4:2653304-2653323 Msa0829610:intron 30.0%
CAGTAAAATTACTCATACCA+AGG - chr5_4:2653324-2653343 None:intergenic 30.0%
ACGTCTAAGAAAATTACATG+AGG - chr5_4:2653718-2653737 None:intergenic 30.0%
! CATGTAATTTTCTTAGACGT+AGG + chr5_4:2653718-2653737 Msa0829610:CDS 30.0%
TAGTGATAGGGTAAATTTAC+TGG + chr5_4:2653762-2653781 Msa0829610:CDS 30.0%
AGAATGTAATTCAGTGATTG+TGG + chr5_4:2653957-2653976 Msa0829610:intron 30.0%
AGTCAACAACTAGCATAATT+AGG + chr5_4:2654095-2654114 Msa0829610:intron 30.0%
GTCAACAACTAGCATAATTA+GGG + chr5_4:2654096-2654115 Msa0829610:intron 30.0%
! CATAATTAGGGTATTCTAAC+TGG + chr5_4:2654108-2654127 Msa0829610:intron 30.0%
ACAAAAAGGAAAAAAAGGAG+AGG - chr5_4:2654151-2654170 None:intergenic 30.0%
AGTAAATCCCTTTCACAAAA+AGG - chr5_4:2654165-2654184 None:intergenic 30.0%
ATAAAAAGAGATTGTGGTAC+TGG - chr5_4:2654221-2654240 None:intergenic 30.0%
CAAATGAGTGGTTAGATATA+GGG - chr5_4:2654257-2654276 None:intergenic 30.0%
TCAAATGAGTGGTTAGATAT+AGG - chr5_4:2654258-2654277 None:intergenic 30.0%
TGAAAAGGGGTTTAGATTTA+GGG - chr5_4:2654293-2654312 None:intergenic 30.0%
TTGAAAAGGGGTTTAGATTT+AGG - chr5_4:2654294-2654313 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG - chr5_4:2654306-2654325 None:intergenic 30.0%
!! AATTTGTTAGTTTGGTACCT+TGG + chr5_4:2654594-2654613 Msa0829610:intron 30.0%
!!! TTTCCTCTTTGTTTTCTAAC+AGG + chr5_4:2655009-2655028 Msa0829610:intron 30.0%
CGTCATAGAGTTAATATTGA+TGG + chr5_4:2655124-2655143 Msa0829610:CDS 30.0%
AATAATTACCTCAAGAACCA+AGG - chr5_4:2655176-2655195 None:intergenic 30.0%
TCACATGATATTAAGGAACA+TGG - chr5_4:2655212-2655231 None:intergenic 30.0%
AAGTTCCAATTCTTCTATGT+TGG - chr5_4:2655354-2655373 None:intergenic 30.0%
ACAATGGAAAGTTAATCATC+GGG - chr5_4:2655392-2655411 None:intergenic 30.0%
!!! GGGGTTGAGTTTTAGTTTAA+TGG + chr5_4:2650603-2650622 Msa0829610:intron 35.0%
TTTGCGTCTGATGTTTGAAT+TGG + chr5_4:2650707-2650726 Msa0829610:intron 35.0%
GGTTAGATATTTCAGCTGTA+AGG - chr5_4:2650815-2650834 None:intergenic 35.0%
!! CCATTTTTGGGAACTTAATG+AGG - chr5_4:2650836-2650855 None:intergenic 35.0%
CCTCATTAAGTTCCCAAAAA+TGG + chr5_4:2650833-2650852 Msa0829610:intron 35.0%
TTCAAATGCCCTAATTCTTC+CGG - chr5_4:2650992-2651011 None:intergenic 35.0%
TCTACTATTTAGGCTGTGTT+TGG + chr5_4:2651070-2651089 Msa0829610:intron 35.0%
CTACTATTTAGGCTGTGTTT+GGG + chr5_4:2651071-2651090 Msa0829610:intron 35.0%
CAGTTGTCTTTATGTTGTCT+TGG + chr5_4:2651192-2651211 Msa0829610:intron 35.0%
GTTGTCTTTATGTTGTCTTG+GGG + chr5_4:2651194-2651213 Msa0829610:intron 35.0%
TAAGCTGGAACAACATATGT+AGG + chr5_4:2651229-2651248 Msa0829610:intron 35.0%
AATAAATAGAGGCAGATACG+TGG + chr5_4:2651439-2651458 Msa0829610:CDS 35.0%
! TGAAGCACGTAGTTCATTTT+TGG + chr5_4:2651544-2651563 Msa0829610:CDS 35.0%
!! GAAGCACGTAGTTCATTTTT+GGG + chr5_4:2651545-2651564 Msa0829610:CDS 35.0%
!! AAGCACGTAGTTCATTTTTG+GGG + chr5_4:2651546-2651565 Msa0829610:CDS 35.0%
! AGGGAAAGCTTTAACAAATG+TGG + chr5_4:2651578-2651597 Msa0829610:CDS 35.0%
AAATCTACTACTATCACCAC+TGG - chr5_4:2651696-2651715 None:intergenic 35.0%
CTGAGCAATCATATTTATGG+TGG - chr5_4:2651723-2651742 None:intergenic 35.0%
CACCATAAATATGATTGCTC+AGG + chr5_4:2651721-2651740 Msa0829610:CDS 35.0%
TGCCTGAGCAATCATATTTA+TGG - chr5_4:2651726-2651745 None:intergenic 35.0%
!! AAGGTTTTGTCTTATTAGCG+AGG + chr5_4:2651930-2651949 Msa0829610:CDS 35.0%
!! AGGTTTTGTCTTATTAGCGA+GGG + chr5_4:2651931-2651950 Msa0829610:CDS 35.0%
GGTCCAAAATAATCTGCAAA+CGG - chr5_4:2652001-2652020 None:intergenic 35.0%
AGGTCCTGCTTTCATAAAAT+GGG + chr5_4:2652072-2652091 Msa0829610:CDS 35.0%
TTTCATAAAATGGGGTCAGT+GGG + chr5_4:2652081-2652100 Msa0829610:CDS 35.0%
AATCTTAACCACTTAAGAGC+GGG - chr5_4:2652442-2652461 None:intergenic 35.0%
TCATTTATAATTTCCGCAGC+TGG + chr5_4:2652542-2652561 Msa0829610:CDS 35.0%
! ATGTTTCTACCAATACAGCA+GGG - chr5_4:2652609-2652628 None:intergenic 35.0%
! TATGTTTCTACCAATACAGC+AGG - chr5_4:2652610-2652629 None:intergenic 35.0%
!!! CGTTATGTTGATGGTTTTCA+AGG + chr5_4:2652652-2652671 Msa0829610:CDS 35.0%
AAATCTGCTCTTGCTCATAT+TGG + chr5_4:2652688-2652707 Msa0829610:CDS 35.0%
AATCTGCTCTTGCTCATATT+GGG + chr5_4:2652689-2652708 Msa0829610:CDS 35.0%
!!! AGTTTTGGATAGAGTCCTTT+TGG + chr5_4:2652785-2652804 Msa0829610:intron 35.0%
!!! GCACTTGTCATTTTTCCAAA+TGG - chr5_4:2652961-2652980 None:intergenic 35.0%
CTGAGATTGTTTAAGTAGCA+TGG + chr5_4:2652984-2653003 Msa0829610:intron 35.0%
ACACATAGATATGCATGATC+AGG + chr5_4:2653041-2653060 Msa0829610:intron 35.0%
!!! AGCCAGAGTCTGTTTTAAAA+AGG - chr5_4:2653200-2653219 None:intergenic 35.0%
TTGTGTGCAACTGAAACTAT+AGG + chr5_4:2653249-2653268 Msa0829610:intron 35.0%
TGTGTGCAACTGAAACTATA+GGG + chr5_4:2653250-2653269 Msa0829610:intron 35.0%
!! AGCTTTCCTTTTTAAGGGTA+TGG + chr5_4:2653378-2653397 Msa0829610:intron 35.0%
!! ATTTAAGTTGCAACTGCCAA+TGG + chr5_4:2653427-2653446 Msa0829610:intron 35.0%
!! TTTAAGTTGCAACTGCCAAT+GGG + chr5_4:2653428-2653447 Msa0829610:intron 35.0%
! ACCATGCAATGTTTTCTTTC+AGG + chr5_4:2653609-2653628 Msa0829610:intron 35.0%
ACCTGAAAGAAAACATTGCA+TGG - chr5_4:2653613-2653632 None:intergenic 35.0%
! ATGCAATGTTTTCTTTCAGG+TGG + chr5_4:2653612-2653631 Msa0829610:intron 35.0%
ATCCTGGGAATATTCTTGTT+CGG + chr5_4:2653659-2653678 Msa0829610:CDS 35.0%
ACAGAATTGTCCTAATCCAA+AGG + chr5_4:2653855-2653874 Msa0829610:CDS 35.0%
TCAATGAAAGCCTTTGGATT+AGG - chr5_4:2653868-2653887 None:intergenic 35.0%
TAATCCAAAGGCTTTCATTG+AGG + chr5_4:2653867-2653886 Msa0829610:CDS 35.0%
ATTACCTCAATGAAAGCCTT+TGG - chr5_4:2653874-2653893 None:intergenic 35.0%
GGAAAAAAAGGAGAGGAATT+TGG - chr5_4:2654144-2654163 None:intergenic 35.0%
AATGTGAAAAAAGCAAAGGG+AGG + chr5_4:2654483-2654502 Msa0829610:intron 35.0%
TGCACATTTATCTGCGTTTA+AGG - chr5_4:2654673-2654692 None:intergenic 35.0%
!!! CTGTCTCACATAGTTTTGTT+TGG + chr5_4:2654700-2654719 Msa0829610:intron 35.0%
!!! TCTCACATAGTTTTGTTTGG+TGG + chr5_4:2654703-2654722 Msa0829610:intron 35.0%
!!! CTCACATAGTTTTGTTTGGT+GGG + chr5_4:2654704-2654723 Msa0829610:intron 35.0%
CTTCCTGTTAGAAAACAAAG+AGG - chr5_4:2655015-2655034 None:intergenic 35.0%
!!! CTTTGTTTTCTAACAGGAAG+TGG + chr5_4:2655015-2655034 Msa0829610:intron 35.0%
!!! TGGAAGAGGCATTTACTTTT+TGG + chr5_4:2655035-2655054 Msa0829610:CDS 35.0%
!!! GGAAGAGGCATTTACTTTTT+GGG + chr5_4:2655036-2655055 Msa0829610:CDS 35.0%
!!! GAAGAGGCATTTACTTTTTG+GGG + chr5_4:2655037-2655056 Msa0829610:CDS 35.0%
AGCAATTACTTGAGAAAGTC+AGG + chr5_4:2655101-2655120 Msa0829610:CDS 35.0%
! TGGTAATGTTTGTACTGTCA+TGG + chr5_4:2655144-2655163 Msa0829610:CDS 35.0%
TTGTGCCAACATAGAAGAAT+TGG + chr5_4:2655346-2655365 Msa0829610:intron 35.0%
GACCTTTCTTACACAATTGA+TGG + chr5_4:2655527-2655546 Msa0829610:CDS 35.0%
GTCCATCAATTGTGTAAGAA+AGG - chr5_4:2655532-2655551 None:intergenic 35.0%
!! TTACACAATTGATGGACTCA+TGG + chr5_4:2655535-2655554 Msa0829610:CDS 35.0%
AAAAAACCTCCCTCTAATCA+AGG - chr5_4:2655563-2655582 None:intergenic 35.0%
!!! GAGGTTTTTTTCCGTTGTTA+AGG + chr5_4:2655573-2655592 Msa0829610:three_prime_UTR 35.0%
TTTCTCAAGAGCCTTAACAA+CGG - chr5_4:2655587-2655606 None:intergenic 35.0%
! TTAGGACACTGAGATGTTTT+GGG - chr5_4:2655629-2655648 None:intergenic 35.0%
AAAACATCTCAGTGTCCTAA+GGG + chr5_4:2655629-2655648 Msa0829610:three_prime_UTR 35.0%
GATGAACCAAGAAAGGAATT+GGG + chr5_4:2655821-2655840 Msa0829610:three_prime_UTR 35.0%
CAAATTCCCAATTCCTTTCT+TGG - chr5_4:2655830-2655849 None:intergenic 35.0%
! GTATGAAGTTCTTCTAGAGG+CGG - chr5_4:2650324-2650343 None:intergenic 40.0%
TCACCAATCGCACAAAACTA+AGG + chr5_4:2650352-2650371 Msa0829610:five_prime_UTR 40.0%
AAGGAGAGAGATTTCACCTT+GGG - chr5_4:2650435-2650454 None:intergenic 40.0%
AAAGGAGAGAGATTTCACCT+TGG - chr5_4:2650436-2650455 None:intergenic 40.0%
! TTCAACTTCTTGTCGCCTTT+TGG + chr5_4:2651019-2651038 Msa0829610:intron 40.0%
!! GTGGTTCTGGTTTAAGTGAT+TGG + chr5_4:2651307-2651326 Msa0829610:intron 40.0%
TACGTGGAAGTGAGTAGAAA+TGG + chr5_4:2651455-2651474 Msa0829610:CDS 40.0%
ACGTGGAAGTGAGTAGAAAT+GGG + chr5_4:2651456-2651475 Msa0829610:CDS 40.0%
ACTTATACGGCATGTAGAAC+CGG - chr5_4:2651517-2651536 None:intergenic 40.0%
!!! ATTTTTGGGGCTTGCAACAA+GGG + chr5_4:2651559-2651578 Msa0829610:CDS 40.0%
! TTTTCCACGCAATCTGAGAA+TGG - chr5_4:2651652-2651671 None:intergenic 40.0%
ATTCTCAGATTGCGTGGAAA+AGG + chr5_4:2651651-2651670 Msa0829610:CDS 40.0%
!! TACAGAAAGTACTGTTCCAG+TGG + chr5_4:2651677-2651696 Msa0829610:CDS 40.0%
! TTTGACTCGCTCTTATTTGC+TGG + chr5_4:2651757-2651776 Msa0829610:CDS 40.0%
TATACAATCCTTCCTGTGGT+TGG - chr5_4:2651856-2651875 None:intergenic 40.0%
ATTCACTCCAACCATTGTGA+TGG + chr5_4:2651973-2651992 Msa0829610:CDS 40.0%
TTCACTCCAACCATTGTGAT+GGG + chr5_4:2651974-2651993 Msa0829610:CDS 40.0%
! GGACCGTTTGCAGATTATTT+TGG + chr5_4:2651995-2652014 Msa0829610:CDS 40.0%
CATCGAACACTAGAAAAAGC+AGG + chr5_4:2652052-2652071 Msa0829610:CDS 40.0%
CAGGTCCTGCTTTCATAAAA+TGG + chr5_4:2652071-2652090 Msa0829610:CDS 40.0%
GGTCCTGCTTTCATAAAATG+GGG + chr5_4:2652073-2652092 Msa0829610:CDS 40.0%
! TGACCCCATTTTATGAAAGC+AGG - chr5_4:2652079-2652098 None:intergenic 40.0%
CTTTCATAAAATGGGGTCAG+TGG + chr5_4:2652080-2652099 Msa0829610:CDS 40.0%
AGATCTCGAGGAAAAAGATC+AGG - chr5_4:2652118-2652137 None:intergenic 40.0%
!! AGTGGTTTTGCTTGTTTACC+AGG - chr5_4:2652322-2652341 None:intergenic 40.0%
TGGTAAACAAGCAAAACCAC+TGG + chr5_4:2652321-2652340 Msa0829610:CDS 40.0%
TAAACAAGCAAAACCACTGG+TGG + chr5_4:2652324-2652343 Msa0829610:CDS 40.0%
TGTGGGAGAATCAATCAGAA+GGG + chr5_4:2652372-2652391 Msa0829610:CDS 40.0%
TTATAATTTCCGCAGCTGGA+AGG + chr5_4:2652546-2652565 Msa0829610:CDS 40.0%
AGTGTCTCACGTTATGTTGA+TGG + chr5_4:2652643-2652662 Msa0829610:CDS 40.0%
!! TGCACTTTTGAAGATGCTTC+TGG + chr5_4:2652717-2652736 Msa0829610:CDS 40.0%
CTGAAACTATAGGGTGGTAT+AGG + chr5_4:2653259-2653278 Msa0829610:intron 40.0%
CTGGATCCATACCCTTAAAA+AGG - chr5_4:2653387-2653406 None:intergenic 40.0%
ATTCATGCAGATATGCATCC+TGG + chr5_4:2653643-2653662 Msa0829610:CDS 40.0%
TTCATGCAGATATGCATCCT+GGG + chr5_4:2653644-2653663 Msa0829610:CDS 40.0%
TCCTGGGAATATTCTTGTTC+GGG + chr5_4:2653660-2653679 Msa0829610:CDS 40.0%
! TGAACTCTCTGGTAGTGATA+GGG + chr5_4:2653750-2653769 Msa0829610:CDS 40.0%
ACGTCAAACAGAGGAACAAA+GGG - chr5_4:2654007-2654026 None:intergenic 40.0%
ACGACATAACATGTGAACAG+AGG - chr5_4:2654034-2654053 None:intergenic 40.0%
CTTGAGAGGAACACACAAAA+AGG - chr5_4:2654077-2654096 None:intergenic 40.0%
!! ATGCTAGTTGTTGACTTGAG+AGG - chr5_4:2654091-2654110 None:intergenic 40.0%
TGAGTGGTTAGATATAGGGA+CGG - chr5_4:2654253-2654272 None:intergenic 40.0%
AGCAAAGGGAGGTTACATTA+AGG + chr5_4:2654494-2654513 Msa0829610:intron 40.0%
GCAAAGGGAGGTTACATTAA+GGG + chr5_4:2654495-2654514 Msa0829610:intron 40.0%
! TTGTTAGTTTGGTACCTTGG+AGG + chr5_4:2654597-2654616 Msa0829610:intron 40.0%
TGATTTATTGTGCATGGCTG+TGG + chr5_4:2654795-2654814 Msa0829610:intron 40.0%
ATCGTGCAAGATCATAGTCA+AGG - chr5_4:2654978-2654997 None:intergenic 40.0%
TTTCTAACAGGAAGTGGAAG+AGG + chr5_4:2655021-2655040 Msa0829610:intron 40.0%
ATGAACTATGTCACCTTCTG+GGG - chr5_4:2655065-2655084 None:intergenic 40.0%
GATGAACTATGTCACCTTCT+GGG - chr5_4:2655066-2655085 None:intergenic 40.0%
GGTGTGGTCACATGATATTA+AGG - chr5_4:2655219-2655238 None:intergenic 40.0%
! CATTGGCTGACTGAAAACTA+GGG + chr5_4:2655252-2655271 Msa0829610:intron 40.0%
! TTTGCTGCTTAGAGCTGATT+GGG + chr5_4:2655499-2655518 Msa0829610:CDS 40.0%
! TAGGACACTGAGATGTTTTG+GGG - chr5_4:2655628-2655647 None:intergenic 40.0%
! CTTAGGACACTGAGATGTTT+TGG - chr5_4:2655630-2655649 None:intergenic 40.0%
CAAAACATCTCAGTGTCCTA+AGG + chr5_4:2655628-2655647 Msa0829610:three_prime_UTR 40.0%
ATTCCTTTCTTGGTTCATCG+TGG - chr5_4:2655820-2655839 None:intergenic 40.0%
CGATGAACCAAGAAAGGAAT+TGG + chr5_4:2655820-2655839 Msa0829610:three_prime_UTR 40.0%
!!! GAGCCTTAGTTTTGTGCGAT+TGG - chr5_4:2650358-2650377 None:intergenic 45.0%
AGCATGTTCTCTTACTCCCA+AGG + chr5_4:2650416-2650435 Msa0829610:five_prime_UTR 45.0%
AAGTTCCCAAAAATGGGCAG+TGG + chr5_4:2650840-2650859 Msa0829610:intron 45.0%
!! AGTCTCCACTGCCCATTTTT+GGG - chr5_4:2650848-2650867 None:intergenic 45.0%
AGTGGAGACTCCAAGAAATG+AGG + chr5_4:2650858-2650877 Msa0829610:intron 45.0%
! AAGTTTAGGTGAGTTGGGTC+TGG + chr5_4:2650923-2650942 Msa0829610:intron 45.0%
! AGTTTAGGTGAGTTGGGTCT+GGG + chr5_4:2650924-2650943 Msa0829610:intron 45.0%
! GAGCATTGCCGGAAGAATTA+GGG + chr5_4:2650981-2651000 Msa0829610:intron 45.0%
!! CTTGTCGCCTTTTGGAAGAT+TGG + chr5_4:2651027-2651046 Msa0829610:intron 45.0%
GGGAGCTTATTGAGATAAGC+TGG + chr5_4:2651214-2651233 Msa0829610:intron 45.0%
TAGAAATGGGCCAATTGTCC+CGG + chr5_4:2651469-2651488 Msa0829610:CDS 45.0%
!!! CATTTTTGGGGCTTGCAACA+AGG + chr5_4:2651558-2651577 Msa0829610:CDS 45.0%
CGCATATACAATCCTTCCTG+TGG - chr5_4:2651860-2651879 None:intergenic 45.0%
TTGTATATGCGTGCCCAAGA+TGG + chr5_4:2651869-2651888 Msa0829610:CDS 45.0%
TGTATATGCGTGCCCAAGAT+GGG + chr5_4:2651870-2651889 Msa0829610:CDS 45.0%
CTAGTGTTCGATGAACAACG+CGG - chr5_4:2652045-2652064 None:intergenic 45.0%
GTGTAGCTGAAACTATGCTC+AGG - chr5_4:2652175-2652194 None:intergenic 45.0%
GAAGAGATTCCTGTTGCATC+TGG + chr5_4:2652253-2652272 Msa0829610:CDS 45.0%
TAATGTAGCACGGTGCACTT+GGG - chr5_4:2652287-2652306 None:intergenic 45.0%
TTAATGTAGCACGGTGCACT+TGG - chr5_4:2652288-2652307 None:intergenic 45.0%
ACCAGGATGTCTAACCTTCA+CGG - chr5_4:2652353-2652372 None:intergenic 45.0%
AAGGTTAGACATCCTGGTGT+GGG + chr5_4:2652355-2652374 Msa0829610:CDS 45.0%
GTGTGGGAGAATCAATCAGA+AGG + chr5_4:2652371-2652390 Msa0829610:CDS 45.0%
CTTAAGAGCGGGAATGAACA+TGG - chr5_4:2652431-2652450 None:intergenic 45.0%
TGTTCATTCCCGCTCTTAAG+TGG + chr5_4:2652431-2652450 Msa0829610:CDS 45.0%
TTCCCTAGCAAGGTCAACTT+GGG - chr5_4:2652503-2652522 None:intergenic 45.0%
AAGAAACATCCTTCCAGCTG+CGG - chr5_4:2652558-2652577 None:intergenic 45.0%
CAAGTGGATAGACAGGCTTA+GGG - chr5_4:2652582-2652601 None:intergenic 45.0%
ACAAGTGGATAGACAGGCTT+AGG - chr5_4:2652583-2652602 None:intergenic 45.0%
GCTCTTCGTTGGGATTAGAA+AGG + chr5_4:2653223-2653242 Msa0829610:intron 45.0%
GTGCAACTGAAACTATAGGG+TGG + chr5_4:2653253-2653272 Msa0829610:intron 45.0%
! TTTAAGGGTATGGATCCAGC+TGG + chr5_4:2653388-2653407 Msa0829610:intron 45.0%
! TCACTCTCTAAAAGTCCAGC+TGG - chr5_4:2653406-2653425 None:intergenic 45.0%
CCTGGGAATATTCTTGTTCG+GGG + chr5_4:2653661-2653680 Msa0829610:CDS 45.0%
! CTGAACTCTCTGGTAGTGAT+AGG + chr5_4:2653749-2653768 Msa0829610:CDS 45.0%
! TTTTCAAATCTGTTGCCCGC+CGG + chr5_4:2653788-2653807 Msa0829610:CDS 45.0%
CAGAGGAACAAAGGGAAGAA+GGG - chr5_4:2653999-2654018 None:intergenic 45.0%
ACAGAGGAACAAAGGGAAGA+AGG - chr5_4:2654000-2654019 None:intergenic 45.0%
CACGTCAAACAGAGGAACAA+AGG - chr5_4:2654008-2654027 None:intergenic 45.0%
CTTTGTTCCTCTGTTTGACG+TGG + chr5_4:2654006-2654025 Msa0829610:intron 45.0%
AAAGGTTCAGCGAGGAAACA+AGG - chr5_4:2654059-2654078 None:intergenic 45.0%
ACACACAAAAAGGTTCAGCG+AGG - chr5_4:2654067-2654086 None:intergenic 45.0%
AAAAGGAGAGGAATTTGGCC+TGG - chr5_4:2654139-2654158 None:intergenic 45.0%
TGGTTAGATATAGGGACGGA+GGG - chr5_4:2654249-2654268 None:intergenic 45.0%
AGGGAGGTTACATTAAGGGA+CGG + chr5_4:2654499-2654518 Msa0829610:intron 45.0%
AGGTTACATTAAGGGACGGA+GGG + chr5_4:2654503-2654522 Msa0829610:intron 45.0%
GGATGAACTATGTCACCTTC+TGG - chr5_4:2655067-2655086 None:intergenic 45.0%
ATGCTTGTAACTGGTAGGTG+TGG - chr5_4:2655235-2655254 None:intergenic 45.0%
CACCTACCAGTTACAAGCAT+TGG + chr5_4:2655235-2655254 Msa0829610:intron 45.0%
AGCCAATGCTTGTAACTGGT+AGG - chr5_4:2655240-2655259 None:intergenic 45.0%
AGTCAGCCAATGCTTGTAAC+TGG - chr5_4:2655244-2655263 None:intergenic 45.0%
!! GCATTGGCTGACTGAAAACT+AGG + chr5_4:2655251-2655270 Msa0829610:intron 45.0%
! CTTTGCTGCTTAGAGCTGAT+TGG + chr5_4:2655498-2655517 Msa0829610:CDS 45.0%
ACTCATGGCTCCTTGATTAG+AGG + chr5_4:2655550-2655569 Msa0829610:exon 45.0%
CTCATGGCTCCTTGATTAGA+GGG + chr5_4:2655551-2655570 Msa0829610:exon 45.0%
!! AGGACACTGAGATGTTTTGG+GGG - chr5_4:2655627-2655646 None:intergenic 45.0%
CAAAGAAACGGCAGTCTTGA+GGG - chr5_4:2655657-2655676 None:intergenic 45.0%
ACAAAGAAACGGCAGTCTTG+AGG - chr5_4:2655658-2655677 None:intergenic 45.0%
! GAGTCTCCACTGCCCATTTT+TGG - chr5_4:2650849-2650868 None:intergenic 50.0%
! GTTTAGGTGAGTTGGGTCTG+GGG + chr5_4:2650925-2650944 Msa0829610:intron 50.0%
TTGGGTCTGGGGATTTACGA+GGG + chr5_4:2650936-2650955 Msa0829610:intron 50.0%
! CTCAAGAGTTCGAGCATTGC+CGG + chr5_4:2650970-2650989 Msa0829610:intron 50.0%
! CGAGCATTGCCGGAAGAATT+AGG + chr5_4:2650980-2650999 Msa0829610:intron 50.0%
TTTGGTCCAACCGGGACAAT+TGG - chr5_4:2651482-2651501 None:intergenic 50.0%
! TGGTGGGTATTTGGTCCAAC+CGG - chr5_4:2651491-2651510 None:intergenic 50.0%
CACACCATTCTCAGATTGCG+TGG + chr5_4:2651645-2651664 Msa0829610:CDS 50.0%
! CGCTCTTATTTGCTGGTACC+TGG + chr5_4:2651764-2651783 Msa0829610:CDS 50.0%
TTGCATTCTCCCAGCGAAGT+TGG + chr5_4:2651813-2651832 Msa0829610:CDS 50.0%
TGCATTCTCCCAGCGAAGTT+GGG + chr5_4:2651814-2651833 Msa0829610:CDS 50.0%
TGCAGAACGTTTCCAACCAC+AGG + chr5_4:2651841-2651860 Msa0829610:CDS 50.0%
GAACGTTTCCAACCACAGGA+AGG + chr5_4:2651845-2651864 Msa0829610:CDS 50.0%
AACGGTCCCATCACAATGGT+TGG - chr5_4:2651983-2652002 None:intergenic 50.0%
TGCAAACGGTCCCATCACAA+TGG - chr5_4:2651987-2652006 None:intergenic 50.0%
AAAAAGATCAGGCCGCGTAG+CGG - chr5_4:2652107-2652126 None:intergenic 50.0%
AGCTGAGTGCATAGATCTCG+AGG - chr5_4:2652130-2652149 None:intergenic 50.0%
GCAATGCTTCCAGATGCAAC+AGG - chr5_4:2652265-2652284 None:intergenic 50.0%
GAAGGTTAGACATCCTGGTG+TGG + chr5_4:2652354-2652373 Msa0829610:CDS 50.0%
! CTGATTGATTCTCCCACACC+AGG - chr5_4:2652370-2652389 None:intergenic 50.0%
! TGTCCCAAGTTGACCTTGCT+AGG + chr5_4:2652497-2652516 Msa0829610:CDS 50.0%
! GTCCCAAGTTGACCTTGCTA+GGG + chr5_4:2652498-2652517 Msa0829610:CDS 50.0%
CTTCCCTAGCAAGGTCAACT+TGG - chr5_4:2652504-2652523 None:intergenic 50.0%
AATACAGCAGGGTGCACAAG+TGG - chr5_4:2652598-2652617 None:intergenic 50.0%
ACTTGTGCACCCTGCTGTAT+TGG + chr5_4:2652597-2652616 Msa0829610:CDS 50.0%
CCCCGAACAAGAATATTCCC+AGG - chr5_4:2653664-2653683 None:intergenic 50.0%
TTTCAAATCTGTTGCCCGCC+GGG + chr5_4:2653789-2653808 Msa0829610:CDS 50.0%
AATGTGAGCAGTGAGCCTAC+AGG - chr5_4:2653931-2653950 None:intergenic 50.0%
AGAGGAACCACGTCAAACAG+AGG - chr5_4:2654016-2654035 None:intergenic 50.0%
GTATTCTAACTGGGCCAACC+AGG + chr5_4:2654118-2654137 Msa0829610:intron 50.0%
GTGGTTAGATATAGGGACGG+AGG - chr5_4:2654250-2654269 None:intergenic 50.0%
GAGGTTACATTAAGGGACGG+AGG + chr5_4:2654502-2654521 Msa0829610:intron 50.0%
GTTTGGTACCTTGGAGGCTT+TGG + chr5_4:2654603-2654622 Msa0829610:intron 50.0%
GAATCAGTCCAAAGCCTCCA+AGG - chr5_4:2654614-2654633 None:intergenic 50.0%
AGTTCATCCTGCAGAGTGCA+TGG + chr5_4:2655078-2655097 Msa0829610:CDS 50.0%
AATTGCTCCATGCACTCTGC+AGG - chr5_4:2655088-2655107 None:intergenic 50.0%
! TACTGTCATGGTGACGACCT+TGG + chr5_4:2655156-2655175 Msa0829610:CDS 50.0%
GCTTAGAGCTGATTGGGCAA+AGG + chr5_4:2655505-2655524 Msa0829610:CDS 50.0%
ATGGCTCCTTGATTAGAGGG+AGG + chr5_4:2655554-2655573 Msa0829610:exon 50.0%
GTTGGGTCTGGGGATTTACG+AGG + chr5_4:2650935-2650954 Msa0829610:intron 55.0%
CGGCAATGCTCGAACTCTTG+AGG - chr5_4:2650972-2650991 None:intergenic 55.0%
AATGGGCCAATTGTCCCGGT+TGG + chr5_4:2651473-2651492 Msa0829610:CDS 55.0%
GGTGGGTATTTGGTCCAACC+GGG - chr5_4:2651490-2651509 None:intergenic 55.0%
GACCAAATACCCACCACTGC+CGG + chr5_4:2651495-2651514 Msa0829610:CDS 55.0%
!! AACCGGCAGTGGTGGGTATT+TGG - chr5_4:2651500-2651519 None:intergenic 55.0%
CATGTAGAACCGGCAGTGGT+GGG - chr5_4:2651507-2651526 None:intergenic 55.0%
GATTGCTCAGGCAGTGAGCT+TGG + chr5_4:2651733-2651752 Msa0829610:CDS 55.0%
GCATTCTCCCAGCGAAGTTG+GGG + chr5_4:2651815-2651834 Msa0829610:CDS 55.0%
TGCATCTCCCCAACTTCGCT+GGG - chr5_4:2651825-2651844 None:intergenic 55.0%
GCCGTGAAGGTTAGACATCC+TGG + chr5_4:2652349-2652368 Msa0829610:CDS 55.0%
AATGGGCAGCTTCCCTAGCA+AGG - chr5_4:2652513-2652532 None:intergenic 55.0%
GGGTGCACAAGTGGATAGAC+AGG - chr5_4:2652589-2652608 None:intergenic 55.0%
TCTGGCTGTCGCTCTTCGTT+GGG + chr5_4:2653213-2653232 Msa0829610:intron 55.0%
GGCATGACTGCTGAACTCTC+TGG + chr5_4:2653739-2653758 Msa0829610:CDS 55.0%
ACTGAGTGCGCATTCTGCAG+CGG - chr5_4:2653824-2653843 None:intergenic 55.0%
GGAGAGGAATTTGGCCTGGT+TGG - chr5_4:2654135-2654154 None:intergenic 55.0%
!!! ACTTTTTGGGGCACCCCAGA+AGG + chr5_4:2655049-2655068 Msa0829610:CDS 55.0%
! GGTGACGACCTTGGTTCTTG+AGG + chr5_4:2655165-2655184 Msa0829610:CDS 55.0%
TGGCAGCGAAAGCTTGATCC+TGG + chr5_4:2655449-2655468 Msa0829610:CDS 55.0%
GGCAGCGAAAGCTTGATCCT+GGG + chr5_4:2655450-2655469 Msa0829610:CDS 55.0%
GTCTGCATCACATCGTACCC+AGG - chr5_4:2655470-2655489 None:intergenic 55.0%
GCGCCACGATGAACCAAGAA+AGG + chr5_4:2655814-2655833 Msa0829610:three_prime_UTR 55.0%
GCATGTAGAACCGGCAGTGG+TGG - chr5_4:2651508-2651527 None:intergenic 60.0%
ACGGCATGTAGAACCGGCAG+TGG - chr5_4:2651511-2651530 None:intergenic 60.0%
CTGCATCTCCCCAACTTCGC+TGG - chr5_4:2651826-2651845 None:intergenic 60.0%
ACCACTGGTGGTTGCCGTGA+AGG + chr5_4:2652336-2652355 Msa0829610:CDS 60.0%
ACCTTCACGGCAACCACCAG+TGG - chr5_4:2652340-2652359 None:intergenic 60.0%
CTCTGGCTGTCGCTCTTCGT+TGG + chr5_4:2653212-2653231 Msa0829610:intron 60.0%
AAATCTGTTGCCCGCCGGGA+TGG + chr5_4:2653793-2653812 Msa0829610:CDS 60.0%
GTGCGCATTCTGCAGCGGTA+CGG - chr5_4:2653819-2653838 None:intergenic 60.0%
GCAGTCTTGAGGGAGCCCTT+AGG - chr5_4:2655647-2655666 None:intergenic 60.0%
CTGCAGCGGTACGGCCATCC+CGG - chr5_4:2653810-2653829 None:intergenic 70.0%
GGGGTCAGTGGGCCGCTACG+CGG + chr5_4:2652092-2652111 Msa0829610:CDS 75.0%
AGCGGTACGGCCATCCCGGC+GGG - chr5_4:2653806-2653825 None:intergenic 75.0%
CAGCGGTACGGCCATCCCGG+CGG - chr5_4:2653807-2653826 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 2650290 2655903 2650290 ID=Msa0829610;Name=Msa0829610
chr5_4 mRNA 2650290 2655903 2650290 ID=Msa0829610-mRNA-1;Parent=Msa0829610;Name=Msa0829610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=155|1|1|1|0.75|0.6|5|338|624
chr5_4 exon 2650290 2650437 2650290 ID=Msa0829610-mRNA-1:exon:891;Parent=Msa0829610-mRNA-1
chr5_4 exon 2651391 2652738 2651391 ID=Msa0829610-mRNA-1:exon:892;Parent=Msa0829610-mRNA-1
chr5_4 exon 2653631 2653888 2653631 ID=Msa0829610-mRNA-1:exon:893;Parent=Msa0829610-mRNA-1
chr5_4 exon 2655031 2655186 2655031 ID=Msa0829610-mRNA-1:exon:894;Parent=Msa0829610-mRNA-1
chr5_4 exon 2655446 2655903 2655446 ID=Msa0829610-mRNA-1:exon:895;Parent=Msa0829610-mRNA-1
chr5_4 five_prime_UTR 2650290 2650437 2650290 ID=Msa0829610-mRNA-1:five_prime_utr;Parent=Msa0829610-mRNA-1
chr5_4 five_prime_UTR 2651391 2651397 2651391 ID=Msa0829610-mRNA-1:five_prime_utr;Parent=Msa0829610-mRNA-1
chr5_4 CDS 2651398 2652738 2651398 ID=Msa0829610-mRNA-1:cds;Parent=Msa0829610-mRNA-1
chr5_4 CDS 2653631 2653888 2653631 ID=Msa0829610-mRNA-1:cds;Parent=Msa0829610-mRNA-1
chr5_4 CDS 2655031 2655186 2655031 ID=Msa0829610-mRNA-1:cds;Parent=Msa0829610-mRNA-1
chr5_4 CDS 2655446 2655565 2655446 ID=Msa0829610-mRNA-1:cds;Parent=Msa0829610-mRNA-1
chr5_4 three_prime_UTR 2655566 2655903 2655566 ID=Msa0829610-mRNA-1:three_prime_utr;Parent=Msa0829610-mRNA-1
Gene Sequence

>Msa0829610

ATGCTTAGAGCGATAAAGAGAGCTGCCCAGTCCGTTCATAAAATAAATAGAGGCAGATACGTGGAAGTGAGTAGAAATGGGCCAATTGTCCCGGTTGGACCAAATACCCACCACTGCCGGTTCTACATGCCGTATAAGTTTCATAATGAAGCACGTAGTTCATTTTTGGGGCTTGCAACAAGGGAAAGCTTTAACAAATGTGGTTCTTTTAGAAACTTTTGTGTAAGATCAGCGAGTAATGAATTCACACACCATTCTCAGATTGCGTGGAAAAGGCTGTACAGAAAGTACTGTTCCAGTGGTGATAGTAGTAGATTTTCTCCCACCATAAATATGATTGCTCAGGCAGTGAGCTTGGCTTTGACTCGCTCTTATTTGCTGGTACCTGGTATTTTTGCATTTACATGTGGAGAGCTTGCATTCTCCCAGCGAAGTTGGGGAGATGCAGAACGTTTCCAACCACAGGAAGGATTGTATATGCGTGCCCAAGATGGGTATAATTACATGTTTACATTTACGTTCATGATAGTTGAAGGTTTTGTCTTATTAGCGAGGGCTCTATATCTAGCAATATTATTCACTCCAACCATTGTGATGGGACCGTTTGCAGATTATTTTGGACCAAATTTTAGGAAACTATGGCTCCGCGTTGTTCATCGAACACTAGAAAAAGCAGGTCCTGCTTTCATAAAATGGGGTCAGTGGGCCGCTACGCGGCCTGATCTTTTTCCTCGAGATCTATGCACTCAGCTTTCTGAACTTCATAGTAAAGCTCCTGAGCATAGTTTCAGCTACACAAAGAAAACCATTGAAAAAGCATTTAACCGAAAACTTCCCGAAATTTTTGACAATTTTGAAGAGATTCCTGTTGCATCTGGAAGCATTGCCCAAGTGCACCGTGCTACATTAAAATATCGTTATCCTGGTAAACAAGCAAAACCACTGGTGGTTGCCGTGAAGGTTAGACATCCTGGTGTGGGAGAATCAATCAGAAGGGATTTTGCTATTATCAATACGGCAGCAAAAATTTCCATGTTCATTCCCGCTCTTAAGTGGTTAAGATTAGATGAGAGTGTACAACAATTTGCAGTTTTTATGATGTCCCAAGTTGACCTTGCTAGGGAAGCTGCCCATTTGAACCGCTTCATTTATAATTTCCGCAGCTGGAAGGATGTTTCTTTCCCTAAGCCTGTCTATCCACTTGTGCACCCTGCTGTATTGGTAGAAACATATGAAAAGGGAGAAAGTGTCTCACGTTATGTTGATGGTTTTCAAGGACAAGAACATTTTAAATCTGCTCTTGCTCATATTGGGACTCATGCACTTTTGAAGATGCTTCTGGTGGACAACTTCATTCATGCAGATATGCATCCTGGGAATATTCTTGTTCGGGGCAAGTCTAGCAAACGACTTTTCAGATCAAAGCCTCATGTAATTTTCTTAGACGTAGGCATGACTGCTGAACTCTCTGGTAGTGATAGGGTAAATTTACTGGAATTTTTCAAATCTGTTGCCCGCCGGGATGGCCGTACCGCTGCAGAATGCGCACTCAGTTTATCGAAGAAACAGAATTGTCCTAATCCAAAGGCTTTCATTGAGGAAGTGGAAGAGGCATTTACTTTTTGGGGCACCCCAGAAGGTGACATAGTTCATCCTGCAGAGTGCATGGAGCAATTACTTGAGAAAGTCAGGCGTCATAGAGTTAATATTGATGGTAATGTTTGTACTGTCATGGTGACGACCTTGGTTCTTGAGGGTTGGCAGCGAAAGCTTGATCCTGGGTACGATGTGATGCAGACGCTGCAGACTTTGCTGCTTAGAGCTGATTGGGCAAAGGACCTTTCTTACACAATTGATGGACTCATGGCTCCTTGA
Protein sequence

>Msa0829610

MLRAIKRAAQSVHKINRGRYVEVSRNGPIVPVGPNTHHCRFYMPYKFHNEARSSFLGLATRESFNKCGSFRNFCVRSASNEFTHHSQIAWKRLYRKYCSSGDSSRFSPTINMIAQAVSLALTRSYLLVPGIFAFTCGELAFSQRSWGDAERFQPQEGLYMRAQDGYNYMFTFTFMIVEGFVLLARALYLAILFTPTIVMGPFADYFGPNFRKLWLRVVHRTLEKAGPAFIKWGQWAATRPDLFPRDLCTQLSELHSKAPEHSFSYTKKTIEKAFNRKLPEIFDNFEEIPVASGSIAQVHRATLKYRYPGKQAKPLVVAVKVRHPGVGESIRRDFAIINTAAKISMFIPALKWLRLDESVQQFAVFMMSQVDLAREAAHLNRFIYNFRSWKDVSFPKPVYPLVHPAVLVETYEKGESVSRYVDGFQGQEHFKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRGKSSKRLFRSKPHVIFLDVGMTAELSGSDRVNLLEFFKSVARRDGRTAAECALSLSKKQNCPNPKAFIEEVEEAFTFWGTPEGDIVHPAECMEQLLEKVRRHRVNIDGNVCTVMVTTLVLEGWQRKLDPGYDVMQTLQTLLLRADWAKDLSYTIDGLMAP*