AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0867900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867900 MtrunA17_Chr2g0281061 98.558 624 9 0 1 624 1 624 0.0 1285
Msa0867900 MtrunA17_Chr4g0048521 75.598 627 148 2 1 624 6 630 0.0 978
Msa0867900 MtrunA17_Chr8g0360981 59.008 605 224 5 31 624 31 622 0.0 718
Msa0867900 MtrunA17_Chr3g0120791 29.206 315 194 7 214 523 203 493 2.76e-32 132
Msa0867900 MtrunA17_Chr3g0129101 29.605 304 188 7 211 508 200 483 3.05e-29 123
Msa0867900 MtrunA17_Chr8g0382921 28.667 300 188 7 211 504 191 470 3.41e-27 117
Msa0867900 MtrunA17_Chr3g0136721 24.427 393 263 8 221 600 141 512 7.44e-25 109
Msa0867900 MtrunA17_Chr6g0465161 27.273 385 246 8 218 598 132 486 1.61e-23 105
Msa0867900 MtrunA17_Chr4g0012061 27.425 299 184 6 224 514 161 434 1.54e-22 102
Msa0867900 MtrunA17_Chr5g0428451 25.948 343 228 8 213 550 126 447 7.22e-22 99.8
Msa0867900 MtrunA17_Chr1g0148121 28.269 283 179 6 216 494 132 394 4.30e-21 97.8
Msa0867900 MtrunA17_Chr1g0147481 26.667 345 203 11 192 508 86 408 2.19e-19 92.8
Msa0867900 MtrunA17_Chr1g0199921 26.923 338 211 7 217 539 202 518 5.90e-19 91.3
Msa0867900 MtrunA17_Chr1g0169361 25.342 292 194 6 218 508 187 455 8.76e-19 90.9
Msa0867900 MtrunA17_Chr4g0057941 27.414 321 189 10 226 529 79 372 1.82e-18 88.6
Msa0867900 MtrunA17_Chr3g0113361 27.500 320 192 12 224 524 96 394 1.39e-17 86.3
Msa0867900 MtrunA17_Chr7g0230671 26.761 284 189 6 226 508 151 416 1.74e-17 86.7
Msa0867900 MtrunA17_Chr5g0433911 25.965 285 188 8 229 510 77 341 8.00e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867900 AT1G11390.1 72.172 557 143 4 71 624 77 624 0.0 851
Msa0867900 AT1G61640.1 64.991 557 190 4 71 624 67 621 0.0 750
Msa0867900 AT1G61640.3 63.514 518 184 4 71 585 67 582 0.0 676
Msa0867900 AT1G61640.2 57.527 372 155 2 71 441 67 436 2.97e-149 440
Msa0867900 AT3G07700.3 29.393 313 194 7 214 523 192 480 4.23e-30 126
Msa0867900 AT3G07700.1 29.393 313 194 7 214 523 192 480 4.59e-30 126
Msa0867900 AT3G07700.2 29.393 313 194 7 214 523 192 480 4.59e-30 126
Msa0867900 AT3G07700.4 29.393 313 194 7 214 523 192 480 4.59e-30 126
Msa0867900 AT5G64940.1 29.276 304 189 7 211 508 215 498 2.08e-28 121
Msa0867900 AT5G64940.2 29.276 304 189 7 211 508 215 498 2.08e-28 121
Msa0867900 AT5G24970.2 25.618 445 269 12 186 600 148 560 1.50e-26 115
Msa0867900 AT5G24970.3 25.618 445 269 12 186 600 109 521 1.56e-26 115
Msa0867900 AT1G79600.1 29.110 292 188 6 218 508 150 423 5.76e-26 113
Msa0867900 AT5G24970.1 25.169 445 268 13 186 600 109 518 1.78e-23 105
Msa0867900 AT1G65950.2 29.730 296 186 8 177 463 53 335 2.45e-23 103
Msa0867900 AT1G65950.1 29.730 296 186 8 177 463 53 335 4.34e-23 103
Msa0867900 AT1G71810.1 25.654 382 256 7 218 598 123 477 2.23e-21 99.4
Msa0867900 AT4G24810.6 27.628 333 190 10 218 527 25 329 3.82e-20 94.0
Msa0867900 AT4G24810.1 27.628 333 190 10 218 527 25 329 3.82e-20 94.0
Msa0867900 AT4G24810.4 27.900 319 181 9 218 515 25 315 4.04e-20 92.0
Msa0867900 AT4G24810.2 27.164 335 193 9 218 529 68 374 4.24e-20 94.4
Msa0867900 AT4G24810.5 29.352 293 158 9 218 489 25 289 1.13e-19 90.9
Msa0867900 AT5G50330.1 25.872 344 212 10 226 550 76 395 1.26e-19 92.8
Msa0867900 AT4G31390.1 27.365 296 175 8 216 499 168 435 1.31e-19 93.6
Msa0867900 AT3G24190.1 25.581 301 193 8 211 508 191 463 1.59e-19 93.6
Msa0867900 AT4G24810.3 27.193 342 191 11 218 529 25 338 5.04e-19 90.5
Msa0867900 AT2G39190.2 22.388 402 272 8 217 599 201 581 1.83e-18 90.1
Msa0867900 AT5G05200.1 23.907 343 235 8 213 550 127 448 9.01e-18 87.4
Msa0867900 AT5G24810.1 26.861 309 184 8 216 508 100 382 2.39e-16 83.6
Msa0867900 AT2G40090.1 25.817 306 195 12 224 514 98 386 2.14e-13 73.6
Msa0867900 AT5G24810.2 25.588 340 180 10 216 508 100 413 5.07e-13 73.2
Msa0867900 AT5G50330.2 23.547 344 204 10 226 550 76 379 6.33e-13 71.6
Msa0867900 AT4G31390.3 25.475 263 156 8 249 499 2 236 1.14e-11 67.8
Msa0867900 AT2G39190.1 27.108 166 112 2 217 382 201 357 3.99e-11 65.5

Find 170 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTCCCAATTCCTTTCT+TGG 0.184162 6_1:+1143721 None:intergenic
GGACCGTTTGCAGATTATTT+TGG 0.196932 6_1:-1147553 Msa0867900:CDS
TGCTAGTTTGATGAAGAATT+TGG 0.231329 6_1:+1149150 None:intergenic
TGCCTGAGCAATCATATTTA+TGG 0.231958 6_1:+1147825 None:intergenic
CTTAGGACACTGAGATGTTT+TGG 0.237086 6_1:+1143921 None:intergenic
AAATCTGCTCTTGCTCATAT+TGG 0.237300 6_1:-1146860 Msa0867900:CDS
AGCCATAGTTTCCTAAAATT+TGG 0.244909 6_1:+1147529 None:intergenic
CAGGTCCTGCTTTCATAAAA+TGG 0.265236 6_1:-1147477 Msa0867900:CDS
TCCTGGGAATATTCTTGTTC+GGG 0.277946 6_1:-1145888 Msa0867900:CDS
AAATGAATTTCTTGGGCCTT+AGG 0.287922 6_1:-1149269 None:intergenic
GACCTTTCTTACACAATTGA+TGG 0.297388 6_1:-1144021 Msa0867900:CDS
TTTGACTCGCTCTTATTTGC+TGG 0.307748 6_1:-1147791 Msa0867900:CDS
CGATGAACCAAGAAAGGAAT+TGG 0.316206 6_1:-1143728 Msa0867900:three_prime_UTR
GGATGAACTATGTCACCTTC+TGG 0.327276 6_1:+1144484 None:intergenic
AATCTGCTCTTGCTCATATT+GGG 0.336729 6_1:-1146859 Msa0867900:CDS
TCAATGAAAGCCTTTGGATT+AGG 0.336903 6_1:+1145683 None:intergenic
CTGCATCTCCCCAACTTCGC+TGG 0.337075 6_1:+1147725 None:intergenic
GCTTCATTATGAAACTTATA+CGG 0.339442 6_1:+1148021 None:intergenic
CTGAACTCTCTGGTAGTGAT+AGG 0.345467 6_1:-1145799 Msa0867900:CDS
ATTACCTCAATGAAAGCCTT+TGG 0.353972 6_1:+1145677 None:intergenic
ATCCTGGGAATATTCTTGTT+CGG 0.355681 6_1:-1145889 Msa0867900:CDS
TGCATTCTCCCAGCGAAGTT+GGG 0.356054 6_1:-1147734 Msa0867900:CDS
AGTGTCTCACGTTATGTTGA+TGG 0.359513 6_1:-1146905 Msa0867900:CDS
TAGTGATAGGGTAAATTTAC+TGG 0.362630 6_1:-1145786 Msa0867900:CDS
CGCTCTTATTTGCTGGTACC+TGG 0.380022 6_1:-1147784 Msa0867900:CDS
TACGTGGAAGTGAGTAGAAA+TGG 0.384419 6_1:-1148093 Msa0867900:CDS
CTTTGCTGCTTAGAGCTGAT+TGG 0.385374 6_1:-1144050 Msa0867900:CDS
TATAAATGAAGCGGTTCAAA+TGG 0.389020 6_1:+1147020 None:intergenic
TTGAAAATTAAACAAAATAC+AGG 0.391296 6_1:+1143838 None:intergenic
AATGAATTTCTTGGGCCTTA+GGG 0.393088 6_1:-1149268 None:intergenic
AGGTCCTGCTTTCATAAAAT+GGG 0.393124 6_1:-1147476 Msa0867900:CDS
TGGTGGGTATTTGGTCCAAC+CGG 0.393551 6_1:+1148060 None:intergenic
ACATGTAATTATACCCATCT+TGG 0.394243 6_1:+1147665 None:intergenic
ACAAGTGGATAGACAGGCTT+AGG 0.396500 6_1:+1146968 None:intergenic
AACCGGCAGTGGTGGGTATT+TGG 0.401639 6_1:+1148051 None:intergenic
GATGAACTATGTCACCTTCT+GGG 0.406064 6_1:+1144485 None:intergenic
CTTCCCTAGCAAGGTCAACT+TGG 0.407373 6_1:+1147047 None:intergenic
TTTGCTGCTTAGAGCTGATT+GGG 0.407859 6_1:-1144049 Msa0867900:CDS
ACTCATGGCTCCTTGATTAG+AGG 0.412428 6_1:-1143998 Msa0867900:exon
GAAGAGATTCCTGTTGCATC+TGG 0.418717 6_1:-1147295 Msa0867900:CDS
TTTGGTCCAACCGGGACAAT+TGG 0.420166 6_1:+1148069 None:intergenic
CGTCATAGAGTTAATATTGA+TGG 0.434073 6_1:-1144424 Msa0867900:CDS
TTTACGTTCATGATAGTTGA+AGG 0.437184 6_1:-1147637 Msa0867900:CDS
ATTGGTAGAAACATATGAAA+AGG 0.438740 6_1:-1146933 Msa0867900:CDS
ACTTGTGCACCCTGCTGTAT+TGG 0.440205 6_1:-1146951 Msa0867900:CDS
TCATTTATAATTTCCGCAGC+TGG 0.441166 6_1:-1147006 Msa0867900:CDS
TGGCAGCGAAAGCTTGATCC+TGG 0.443745 6_1:-1144099 Msa0867900:CDS
CAAAGAAACGGCAGTCTTGA+GGG 0.445001 6_1:+1143894 None:intergenic
TTTCAAATCTGTTGCCCGCC+GGG 0.446800 6_1:-1145759 Msa0867900:CDS
ATTCATGCAGATATGCATCC+TGG 0.451986 6_1:-1145905 Msa0867900:CDS
ACTTATACGGCATGTAGAAC+CGG 0.458097 6_1:+1148034 None:intergenic
ATTCTCAGATTGCGTGGAAA+AGG 0.458269 6_1:-1147897 Msa0867900:CDS
AAATCTGTTGCCCGCCGGGA+TGG 0.459158 6_1:-1145755 Msa0867900:CDS
TTGGTAGAAACATATGAAAA+GGG 0.459990 6_1:-1146932 Msa0867900:CDS
AGCAATTACTTGAGAAAGTC+AGG 0.463123 6_1:-1144447 Msa0867900:CDS
CACCATAAATATGATTGCTC+AGG 0.470184 6_1:-1147827 Msa0867900:CDS
GTCCATCAATTGTGTAAGAA+AGG 0.470237 6_1:+1144019 None:intergenic
TTGCATTCTCCCAGCGAAGT+TGG 0.471522 6_1:-1147735 Msa0867900:CDS
CAAAACATCTCAGTGTCCTA+AGG 0.474278 6_1:-1143920 Msa0867900:three_prime_UTR
TTAATGTAGCACGGTGCACT+TGG 0.476026 6_1:+1147263 None:intergenic
TGCATCTCCCCAACTTCGCT+GGG 0.476786 6_1:+1147726 None:intergenic
CATGTAATTATACCCATCTT+GGG 0.480516 6_1:+1147666 None:intergenic
TGTTCATTCCCGCTCTTAAG+TGG 0.482039 6_1:-1147117 Msa0867900:CDS
GATTGCTCAGGCAGTGAGCT+TGG 0.483437 6_1:-1147815 Msa0867900:CDS
TATGTTTCTACCAATACAGC+AGG 0.484385 6_1:+1146941 None:intergenic
TTGTATATGCGTGCCCAAGA+TGG 0.484797 6_1:-1147679 Msa0867900:CDS
AGCGGTACGGCCATCCCGGC+GGG 0.489699 6_1:+1145745 None:intergenic
TGTCCCAAGTTGACCTTGCT+AGG 0.497358 6_1:-1147051 Msa0867900:CDS
ACATTAAAATATCGTTATCC+TGG 0.498375 6_1:-1147247 Msa0867900:CDS
TTACACAATTGATGGACTCA+TGG 0.498739 6_1:-1144013 Msa0867900:CDS
AATTGCTCCATGCACTCTGC+AGG 0.499228 6_1:+1144463 None:intergenic
GCCGTGAAGGTTAGACATCC+TGG 0.500885 6_1:-1147199 Msa0867900:CDS
TTTCTAACAGGAAGTGGAAG+AGG 0.501398 6_1:-1144527 Msa0867900:intron
CTGATTGATTCTCCCACACC+AGG 0.506024 6_1:+1147181 None:intergenic
ACCACTGGTGGTTGCCGTGA+AGG 0.510120 6_1:-1147212 Msa0867900:CDS
ACAAAGAAACGGCAGTCTTG+AGG 0.512689 6_1:+1143893 None:intergenic
ACCAGGATGTCTAACCTTCA+CGG 0.516286 6_1:+1147198 None:intergenic
GACCAAATACCCACCACTGC+CGG 0.518056 6_1:-1148053 Msa0867900:CDS
TATACAATCCTTCCTGTGGT+TGG 0.519758 6_1:+1147695 None:intergenic
TCACCAATCGCACAAAACTA+AGG 0.519983 6_1:-1149195 Msa0867900:five_prime_UTR
CTGCAGCGGTACGGCCATCC+CGG 0.520825 6_1:+1145741 None:intergenic
AACGGTCCCATCACAATGGT+TGG 0.522108 6_1:+1147568 None:intergenic
GCAGTCTTGAGGGAGCCCTT+AGG 0.525030 6_1:+1143904 None:intergenic
CTCATGGCTCCTTGATTAGA+GGG 0.527193 6_1:-1143997 Msa0867900:exon
GGGTGCACAAGTGGATAGAC+AGG 0.530159 6_1:+1146962 None:intergenic
GATGAACCAAGAAAGGAATT+GGG 0.531211 6_1:-1143727 Msa0867900:three_prime_UTR
ACGTGGAAGTGAGTAGAAAT+GGG 0.531630 6_1:-1148092 Msa0867900:CDS
ATTCACTCCAACCATTGTGA+TGG 0.532321 6_1:-1147575 Msa0867900:CDS
TGTATATGCGTGCCCAAGAT+GGG 0.535161 6_1:-1147678 Msa0867900:CDS
GGTGACGACCTTGGTTCTTG+AGG 0.535537 6_1:-1144383 Msa0867900:intron
TGCAGAACGTTTCCAACCAC+AGG 0.535550 6_1:-1147707 Msa0867900:CDS
TCCGTTCATAAAATAAATAG+AGG 0.535725 6_1:-1148120 Msa0867900:CDS
AAATCTACTACTATCACCAC+TGG 0.538008 6_1:+1147855 None:intergenic
CTTAAGAGCGGGAATGAACA+TGG 0.538208 6_1:+1147120 None:intergenic
TAGAAATGGGCCAATTGTCC+CGG 0.538260 6_1:-1148079 Msa0867900:CDS
GCGCCACGATGAACCAAGAA+AGG 0.540549 6_1:-1143734 Msa0867900:three_prime_UTR
GGCATGACTGCTGAACTCTC+TGG 0.542426 6_1:-1145809 Msa0867900:CDS
AGTTCATCCTGCAGAGTGCA+TGG 0.544535 6_1:-1144470 Msa0867900:CDS
AATCTTAACCACTTAAGAGC+GGG 0.544613 6_1:+1147109 None:intergenic
ATAAATGAAGCGGTTCAAAT+GGG 0.546042 6_1:+1147021 None:intergenic
GCATGTAGAACCGGCAGTGG+TGG 0.550140 6_1:+1148043 None:intergenic
TTCACTCCAACCATTGTGAT+GGG 0.551609 6_1:-1147574 Msa0867900:CDS
TAATCCAAAGGCTTTCATTG+AGG 0.552069 6_1:-1145681 Msa0867900:intron
GCATTCTCCCAGCGAAGTTG+GGG 0.555043 6_1:-1147733 Msa0867900:CDS
CACACCATTCTCAGATTGCG+TGG 0.555938 6_1:-1147903 Msa0867900:CDS
GTGCGCATTCTGCAGCGGTA+CGG 0.556512 6_1:+1145732 None:intergenic
TACTGTCATGGTGACGACCT+TGG 0.558128 6_1:-1144392 Msa0867900:CDS
GCAATGCTTCCAGATGCAAC+AGG 0.562469 6_1:+1147286 None:intergenic
AATGGGCCAATTGTCCCGGT+TGG 0.564966 6_1:-1148075 Msa0867900:CDS
TTCCCTAGCAAGGTCAACTT+GGG 0.566297 6_1:+1147048 None:intergenic
GTGTAGCTGAAACTATGCTC+AGG 0.567262 6_1:+1147376 None:intergenic
CTGAGCAATCATATTTATGG+TGG 0.567808 6_1:+1147828 None:intergenic
TTCATGCAGATATGCATCCT+GGG 0.568436 6_1:-1145904 Msa0867900:CDS
CTTTCATAAAATGGGGTCAG+TGG 0.569229 6_1:-1147468 Msa0867900:CDS
ATGAACTATGTCACCTTCTG+GGG 0.571340 6_1:+1144486 None:intergenic
ACCTTCACGGCAACCACCAG+TGG 0.571742 6_1:+1147211 None:intergenic
AGGGAAAGCTTTAACAAATG+TGG 0.575031 6_1:-1147970 Msa0867900:CDS
GGTCCAAAATAATCTGCAAA+CGG 0.575702 6_1:+1147550 None:intergenic
CATGTAGAACCGGCAGTGGT+GGG 0.575943 6_1:+1148044 None:intergenic
TTATAATTTCCGCAGCTGGA+AGG 0.578670 6_1:-1147002 Msa0867900:CDS
GTGTGGGAGAATCAATCAGA+AGG 0.581866 6_1:-1147177 Msa0867900:CDS
AAATCATATAAGAAACCCTA+AGG 0.582382 6_1:+1149253 None:intergenic
TGGTAATGTTTGTACTGTCA+TGG 0.583589 6_1:-1144404 Msa0867900:CDS
CCCCGAACAAGAATATTCCC+AGG 0.587079 6_1:+1145887 None:intergenic
GGTGGGTATTTGGTCCAACC+GGG 0.587788 6_1:+1148061 None:intergenic
AATACAGCAGGGTGCACAAG+TGG 0.588357 6_1:+1146953 None:intergenic
GTCCCAAGTTGACCTTGCTA+GGG 0.588745 6_1:-1147050 Msa0867900:CDS
AATGGGCAGCTTCCCTAGCA+AGG 0.589522 6_1:+1147038 None:intergenic
CAGCGGTACGGCCATCCCGG+CGG 0.593776 6_1:+1145744 None:intergenic
TGAACTCTCTGGTAGTGATA+GGG 0.595798 6_1:-1145798 Msa0867900:CDS
TAATGTAGCACGGTGCACTT+GGG 0.600061 6_1:+1147264 None:intergenic
GGCAGCGAAAGCTTGATCCT+GGG 0.600800 6_1:-1144098 Msa0867900:CDS
AAGGTTAGACATCCTGGTGT+GGG 0.602666 6_1:-1147193 Msa0867900:CDS
AGCTGAGTGCATAGATCTCG+AGG 0.605437 6_1:+1147421 None:intergenic
ACGGCATGTAGAACCGGCAG+TGG 0.607529 6_1:+1148040 None:intergenic
TTTCATAAAATGGGGTCAGT+GGG 0.608104 6_1:-1147467 Msa0867900:CDS
TGAAAATTAAACAAAATACA+GGG 0.608528 6_1:+1143839 None:intergenic
AAAACATCTCAGTGTCCTAA+GGG 0.610534 6_1:-1143919 Msa0867900:three_prime_UTR
AATGTATGAAGTTCTTCTAG+AGG 0.614261 6_1:+1149223 None:intergenic
GCTTAGAGCTGATTGGGCAA+AGG 0.614729 6_1:-1144043 Msa0867900:CDS
AGCATGTTCTCTTACTCCCA+AGG 0.614917 6_1:-1149131 Msa0867900:intron
ACAGAATTGTCCTAATCCAA+AGG 0.616547 6_1:-1145693 Msa0867900:CDS
GGGGTCAGTGGGCCGCTACG+CGG 0.616757 6_1:-1147456 Msa0867900:CDS
AAGAAACATCCTTCCAGCTG+CGG 0.618231 6_1:+1146993 None:intergenic
ATTCCTTTCTTGGTTCATCG+TGG 0.619033 6_1:+1143731 None:intergenic
GTCTGCATCACATCGTACCC+AGG 0.619350 6_1:+1144081 None:intergenic
TGCGGAAATTATAAATGAAG+CGG 0.620081 6_1:+1147011 None:intergenic
TACAGAAAGTACTGTTCCAG+TGG 0.620946 6_1:-1147871 Msa0867900:CDS
CGCATATACAATCCTTCCTG+TGG 0.621310 6_1:+1147691 None:intergenic
GAAGGTTAGACATCCTGGTG+TGG 0.621587 6_1:-1147194 Msa0867900:CDS
CAAGTGGATAGACAGGCTTA+GGG 0.625206 6_1:+1146969 None:intergenic
ATGGCTCCTTGATTAGAGGG+AGG 0.627887 6_1:-1143994 Msa0867900:exon
TGGTAAACAAGCAAAACCAC+TGG 0.628724 6_1:-1147227 Msa0867900:CDS
AATAATTACCTCAAGAACCA+AGG 0.630120 6_1:+1144375 None:intergenic
TGAGCAATCATATTTATGGT+GGG 0.639230 6_1:+1147829 None:intergenic
GAACGTTTCCAACCACAGGA+AGG 0.642315 6_1:-1147703 Msa0867900:CDS
CCTGGGAATATTCTTGTTCG+GGG 0.646006 6_1:-1145887 Msa0867900:CDS
GTATGAAGTTCTTCTAGAGG+CGG 0.648018 6_1:+1149226 None:intergenic
AATAAATAGAGGCAGATACG+TGG 0.651014 6_1:-1148109 Msa0867900:CDS
TGCAAACGGTCCCATCACAA+TGG 0.656016 6_1:+1147564 None:intergenic
TAATCTTAACCACTTAAGAG+CGG 0.658895 6_1:+1147108 None:intergenic
ACTGAGTGCGCATTCTGCAG+CGG 0.662239 6_1:+1145727 None:intergenic
GGTCCTGCTTTCATAAAATG+GGG 0.673913 6_1:-1147475 Msa0867900:CDS
GAAAATTAAACAAAATACAG+GGG 0.674782 6_1:+1143840 None:intergenic
TTTCTCAAGAGCCTTAACAA+CGG 0.679204 6_1:+1143964 None:intergenic
ACGTCTAAGAAAATTACATG+AGG 0.681342 6_1:+1145833 None:intergenic
TGTGGGAGAATCAATCAGAA+GGG 0.688516 6_1:-1147176 Msa0867900:CDS
TAAACAAGCAAAACCACTGG+TGG 0.694708 6_1:-1147224 Msa0867900:CDS
ATGTTTCTACCAATACAGCA+GGG 0.721417 6_1:+1146942 None:intergenic
CTAGTGTTCGATGAACAACG+CGG 0.805665 6_1:+1147506 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTATTCTAG+CGG - chr6_1:1146827-1146846 Msa0867900:intron 10.0%
!! ATTATAAAGTTACAAATATT+AGG + chr6_1:1148796-1148815 None:intergenic 10.0%
!! TTAAAAAAAAAACAAAGAAA+CGG + chr6_1:1149045-1149064 None:intergenic 10.0%
!!! TTTGTAATAGATATTTGTTA+TGG - chr6_1:1143897-1143916 Msa0867900:three_prime_UTR 15.0%
!! TTCAAAATTGTCAAAAATTT+CGG + chr6_1:1145612-1145631 None:intergenic 15.0%
!! ATAAAAAAAAAAAATCCCAT+TGG + chr6_1:1146822-1146841 None:intergenic 15.0%
!!! AAAAAATGTTTTAGATTTAG+AGG + chr6_1:1146896-1146915 None:intergenic 15.0%
!!! TAAAACATTTTTTGTATCTA+CGG - chr6_1:1146903-1146922 Msa0867900:CDS 15.0%
!! TTTAATACATATACAAACAA+AGG - chr6_1:1147773-1147792 Msa0867900:CDS 15.0%
!! AATTCTTCACATATAAATAT+AGG + chr6_1:1148113-1148132 None:intergenic 15.0%
!! AATCATTTAAATCTACAATT+AGG + chr6_1:1148156-1148175 None:intergenic 15.0%
!! GAATATAAAATAAGAAATGA+TGG + chr6_1:1148211-1148230 None:intergenic 15.0%
!!! TTTGTAACTTTATAATTTGT+AGG - chr6_1:1148800-1148819 Msa0867900:intron 15.0%
!!! TTGTAACTTTATAATTTGTA+GGG - chr6_1:1148801-1148820 Msa0867900:intron 15.0%
!! TGAAAATTAAACAAAATACA+GGG + chr6_1:1149088-1149107 None:intergenic 15.0%
!! TTGAAAATTAAACAAAATAC+AGG + chr6_1:1149089-1149108 None:intergenic 15.0%
!! TAAAAATGCTATATTATTGT+TGG - chr6_1:1149230-1149249 Msa0867900:five_prime_UTR 15.0%
!!! TCTATTTTCATTTGCATTTT+TGG - chr6_1:1143839-1143858 Msa0867900:three_prime_UTR 20.0%
!!! CTATTTTCATTTGCATTTTT+GGG - chr6_1:1143840-1143859 Msa0867900:three_prime_UTR 20.0%
!!! TATTTTCATTTGCATTTTTG+GGG - chr6_1:1143841-1143860 Msa0867900:three_prime_UTR 20.0%
!! ATATTCGTTTATTTGATCAT+AGG - chr6_1:1143929-1143948 Msa0867900:three_prime_UTR 20.0%
!!! AAAATCTAGACTTTTCTTTA+TGG - chr6_1:1143958-1143977 Msa0867900:three_prime_UTR 20.0%
!!! AAATCTAGACTTTTCTTTAT+GGG - chr6_1:1143959-1143978 Msa0867900:three_prime_UTR 20.0%
!!! TATATGCTTTTTCAATTCTA+TGG - chr6_1:1144054-1144073 Msa0867900:CDS 20.0%
!!! TTTTTGGTGAATTAAAGTTT+AGG - chr6_1:1144285-1144304 Msa0867900:intron 20.0%
!! TGGGTTATTAGATAAAATTA+AGG - chr6_1:1144466-1144485 Msa0867900:CDS 20.0%
!! TAAAATTAGATTTGCATCAA+GGG + chr6_1:1144655-1144674 None:intergenic 20.0%
!! ATAAAATTAGATTTGCATCA+AGG + chr6_1:1144656-1144675 None:intergenic 20.0%
!!! ATCTAATTTTATGCTTTTTG+TGG - chr6_1:1144664-1144683 Msa0867900:intron 20.0%
!!! AATGTTTTGATAACATAATC+CGG + chr6_1:1144717-1144736 None:intergenic 20.0%
!!! ATTATTTTGGACCAAATTTT+AGG - chr6_1:1145384-1145403 Msa0867900:intron 20.0%
!! TCAAAATTGTCAAAAATTTC+GGG + chr6_1:1145611-1145630 None:intergenic 20.0%
!!! ATAAAAACGAAGTGTTATAA+AGG - chr6_1:1146207-1146226 Msa0867900:intron 20.0%
!! TCAAAAAAAATTACATTGTG+AGG + chr6_1:1146237-1146256 None:intergenic 20.0%
!! ATTAGATAAACAAGTTATCT+TGG + chr6_1:1146459-1146478 None:intergenic 20.0%
!!! ATATTTAGCTTTCCTTTTTA+AGG - chr6_1:1146748-1146767 Msa0867900:intron 20.0%
!!! TATTTAGCTTTCCTTTTTAA+GGG - chr6_1:1146749-1146768 Msa0867900:intron 20.0%
!! TTAAAATTACTGCTTACAAA+GGG + chr6_1:1146937-1146956 None:intergenic 20.0%
!!! TTTAAAATTACTGCTTACAA+AGG + chr6_1:1146938-1146957 None:intergenic 20.0%
!!! GTAAGCAGTAATTTTAAATT+TGG - chr6_1:1146940-1146959 Msa0867900:CDS 20.0%
!! AAAAAATCGATAATCTAAGT+TGG + chr6_1:1147282-1147301 None:intergenic 20.0%
!!! TTTTTTTCCTTTTTGTGAAA+GGG - chr6_1:1147531-1147550 Msa0867900:CDS 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr6_1:1147730-1147749 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + chr6_1:1147731-1147750 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG + chr6_1:1147732-1147751 None:intergenic 20.0%
!! TTTAAATGATTTATTGTGCA+TGG - chr6_1:1148165-1148184 Msa0867900:intron 20.0%
!! GAAAATTAAACAAAATACAG+GGG + chr6_1:1149087-1149106 None:intergenic 20.0%
!!! CAATAATATAGCATTTTTAC+AGG + chr6_1:1149229-1149248 None:intergenic 20.0%
! AAATCATATAAGAAACCCTA+AGG + chr6_1:1143674-1143693 None:intergenic 25.0%
! ATGCAAATGAAAATAGAGAA+GGG + chr6_1:1143836-1143855 None:intergenic 25.0%
! AATGCAAATGAAAATAGAGA+AGG + chr6_1:1143837-1143856 None:intergenic 25.0%
!!! ATTTTCATTTGCATTTTTGG+GGG - chr6_1:1143842-1143861 Msa0867900:three_prime_UTR 25.0%
!! AATCTAGACTTTTCTTTATG+GGG - chr6_1:1143960-1143979 Msa0867900:three_prime_UTR 25.0%
!! ATTGGTTATCTTTTCTACAT+TGG - chr6_1:1144101-1144120 Msa0867900:CDS 25.0%
!!! GGGCATTTATTGATTTTTTT+TGG - chr6_1:1144269-1144288 Msa0867900:intron 25.0%
! AATTAAAGTTTAGGTGAGTT+GGG - chr6_1:1144294-1144313 Msa0867900:intron 25.0%
!!! AGTTATTTCTACAATCAAAG+AGG - chr6_1:1144513-1144532 Msa0867900:CDS 25.0%
!!! ATTTATTTTATGAACGGACT+GGG + chr6_1:1144802-1144821 None:intergenic 25.0%
!!! TATTTATTTTATGAACGGAC+TGG + chr6_1:1144803-1144822 None:intergenic 25.0%
! TCCGTTCATAAAATAAATAG+AGG - chr6_1:1144804-1144823 Msa0867900:intron 25.0%
!!! GCCTCTATTTATTTTATGAA+CGG + chr6_1:1144808-1144827 None:intergenic 25.0%
! GCTTCATTATGAAACTTATA+CGG + chr6_1:1144906-1144925 None:intergenic 25.0%
!!! AACGATATTTTAATGTAGCA+CGG + chr6_1:1145673-1145692 None:intergenic 25.0%
! ACATTAAAATATCGTTATCC+TGG - chr6_1:1145677-1145696 Msa0867900:intron 25.0%
!!! GGATTTTGCTATTATCAATA+CGG - chr6_1:1145769-1145788 Msa0867900:CDS 25.0%
! ATTGGTAGAAACATATGAAA+AGG - chr6_1:1145991-1146010 Msa0867900:intron 25.0%
! TTGGTAGAAACATATGAAAA+GGG - chr6_1:1145992-1146011 Msa0867900:intron 25.0%
!! ACATTGCTATCATATAGTTT+TGG - chr6_1:1146146-1146165 Msa0867900:intron 25.0%
!!! GGATTGATGAATGAATTTTT+TGG - chr6_1:1146381-1146400 Msa0867900:intron 25.0%
! CTATATCTTGACAAAGAAAA+CGG + chr6_1:1146541-1146560 None:intergenic 25.0%
! GTAACAAATAACAGATATCT+GGG + chr6_1:1146858-1146877 None:intergenic 25.0%
! TGTAACAAATAACAGATATC+TGG + chr6_1:1146859-1146878 None:intergenic 25.0%
!!! TTATCGATTTTTTTTCCTGT+AGG - chr6_1:1147289-1147308 Msa0867900:CDS 25.0%
!! ATAATTAGGGTATTCTAACT+GGG - chr6_1:1147485-1147504 Msa0867900:CDS 25.0%
! CTTTCACAAAAAGGAAAAAA+AGG + chr6_1:1147532-1147551 None:intergenic 25.0%
!!! CTTTTTTTCCTTTTTGTGAA+AGG - chr6_1:1147530-1147549 Msa0867900:CDS 25.0%
! AAAAACTAAAGTTTAACTGC+AGG + chr6_1:1147571-1147590 None:intergenic 25.0%
! GAGTATATAAAAAGAGATTG+TGG + chr6_1:1147603-1147622 None:intergenic 25.0%
! CAAAAATAAAGTCAAATGAG+TGG + chr6_1:1147645-1147664 None:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + chr6_1:1147683-1147702 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr6_1:1147684-1147703 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr6_1:1147720-1147739 None:intergenic 25.0%
! TATACAAACAAAGGACAATA+TGG - chr6_1:1147782-1147801 Msa0867900:CDS 25.0%
! AAGAAATGTGAAAAAAGCAA+AGG - chr6_1:1147855-1147874 Msa0867900:CDS 25.0%
! AGAAATGTGAAAAAAGCAAA+GGG - chr6_1:1147856-1147875 Msa0867900:CDS 25.0%
!!! TGCGTTAAAATTTGTTAGTT+TGG - chr6_1:1147962-1147981 Msa0867900:CDS 25.0%
! TTTAAATCTGCGTCAAATAT+AGG + chr6_1:1148012-1148031 None:intergenic 25.0%
! ATGTGAAGAATTACTGTAAT+AGG - chr6_1:1148121-1148140 Msa0867900:CDS 25.0%
! GTTATTCAATCAAGTAATGT+TGG - chr6_1:1148260-1148279 Msa0867900:intron 25.0%
!! ATTTGACATTATTTGCTGAA+GGG + chr6_1:1148289-1148308 None:intergenic 25.0%
!! TATTTGACATTATTTGCTGA+AGG + chr6_1:1148290-1148309 None:intergenic 25.0%
! TACAATGGAAAGTTAATCAT+CGG + chr6_1:1148769-1148788 None:intergenic 25.0%
! CAAATATTAGGTAAGTACAA+TGG + chr6_1:1148784-1148803 None:intergenic 25.0%
!! AACTTTATAATTTGTAGGGT+TGG - chr6_1:1148805-1148824 Msa0867900:intron 25.0%
AATGTATGAAGTTCTTCTAG+AGG + chr6_1:1143704-1143723 None:intergenic 30.0%
! TGCTAGTTTGATGAAGAATT+TGG + chr6_1:1143777-1143796 None:intergenic 30.0%
AATGAAAATAGAGAAGGGAA+AGG + chr6_1:1143831-1143850 None:intergenic 30.0%
!!! GGGTTGAGTTTTAGTTTAAT+GGG - chr6_1:1143980-1143999 Msa0867900:three_prime_UTR 30.0%
! TTATCTTTTCTACATTGGAG+AGG - chr6_1:1144106-1144125 Msa0867900:intron 30.0%
CTCATTAAGTTCCCAAAAAT+GGG - chr6_1:1144210-1144229 Msa0867900:intron 30.0%
ACTATTTGTTCCTCATTTCT+TGG + chr6_1:1144247-1144266 None:intergenic 30.0%
AGAAATGAGGAACAAATAGT+TGG - chr6_1:1144247-1144266 Msa0867900:intron 30.0%
GAAATGAGGAACAAATAGTT+GGG - chr6_1:1144248-1144267 Msa0867900:intron 30.0%
AAATGAGGAACAAATAGTTG+GGG - chr6_1:1144249-1144268 Msa0867900:intron 30.0%
GAATTAAAGTTTAGGTGAGT+TGG - chr6_1:1144293-1144312 Msa0867900:intron 30.0%
TAAATGTCCAATCTTCCAAA+AGG + chr6_1:1144413-1144432 None:intergenic 30.0%
AGTGTACTCATCTACTATTT+AGG - chr6_1:1144436-1144455 Msa0867900:CDS 30.0%
CTACAATCAAAGAGGAAATA+TGG - chr6_1:1144521-1144540 Msa0867900:intron 30.0%
AGTTGTCTTTATGTTGTCTT+GGG - chr6_1:1144569-1144588 Msa0867900:intron 30.0%
!! TTTTATGCTTTTTGTGGTTC+TGG - chr6_1:1144670-1144689 Msa0867900:intron 30.0%
TAAGTGATTGGAAATATAGC+CGG - chr6_1:1144695-1144714 Msa0867900:intron 30.0%
TGAGCAATCATATTTATGGT+GGG + chr6_1:1145098-1145117 None:intergenic 30.0%
CATGTAAATGCAAAAATACC+AGG + chr6_1:1145161-1145180 None:intergenic 30.0%
!! GGTATTTTTGCATTTACATG+TGG - chr6_1:1145161-1145180 Msa0867900:intron 30.0%
CATGTAATTATACCCATCTT+GGG + chr6_1:1145261-1145280 None:intergenic 30.0%
ACATGTAATTATACCCATCT+TGG + chr6_1:1145262-1145281 None:intergenic 30.0%
TTTACGTTCATGATAGTTGA+AGG - chr6_1:1145287-1145306 Msa0867900:intron 30.0%
!! GACCAAATTTTAGGAAACTA+TGG - chr6_1:1145393-1145412 Msa0867900:intron 30.0%
AGCCATAGTTTCCTAAAATT+TGG + chr6_1:1145398-1145417 None:intergenic 30.0%
!!! TCGGTTAAATGCTTTTTCAA+TGG + chr6_1:1145582-1145601 None:intergenic 30.0%
! CAAAAATTTCGGGAAGTTTT+CGG + chr6_1:1145601-1145620 None:intergenic 30.0%
TAATCTTAACCACTTAAGAG+CGG + chr6_1:1145819-1145838 None:intergenic 30.0%
ATAAATGAAGCGGTTCAAAT+GGG + chr6_1:1145906-1145925 None:intergenic 30.0%
TATAAATGAAGCGGTTCAAA+TGG + chr6_1:1145907-1145926 None:intergenic 30.0%
TGCGGAAATTATAAATGAAG+CGG + chr6_1:1145916-1145935 None:intergenic 30.0%
ACAAATCAACAATGTCCAAA+AGG + chr6_1:1146179-1146198 None:intergenic 30.0%
AGAGAAATTGTTAGTCCATT+TGG - chr6_1:1146319-1146338 Msa0867900:intron 30.0%
TCTAATAAGCAAGTGTGAAT+CGG - chr6_1:1146473-1146492 Msa0867900:intron 30.0%
!!! ATCCTTTTTAAAACAGACTC+TGG - chr6_1:1146571-1146590 Msa0867900:intron 30.0%
GATCATTATTACAAAGACCT+TGG - chr6_1:1146680-1146699 Msa0867900:intron 30.0%
CAGTAAAATTACTCATACCA+AGG + chr6_1:1146700-1146719 None:intergenic 30.0%
ACGTCTAAGAAAATTACATG+AGG + chr6_1:1147094-1147113 None:intergenic 30.0%
! CATGTAATTTTCTTAGACGT+AGG - chr6_1:1147094-1147113 Msa0867900:CDS 30.0%
TAGTGATAGGGTAAATTTAC+TGG - chr6_1:1147138-1147157 Msa0867900:CDS 30.0%
AGAATGTAATTCAGTGATTG+TGG - chr6_1:1147333-1147352 Msa0867900:CDS 30.0%
AGTCAACAACTAGCATAATT+AGG - chr6_1:1147471-1147490 Msa0867900:CDS 30.0%
GTCAACAACTAGCATAATTA+GGG - chr6_1:1147472-1147491 Msa0867900:CDS 30.0%
! CATAATTAGGGTATTCTAAC+TGG - chr6_1:1147484-1147503 Msa0867900:CDS 30.0%
ACAAAAAGGAAAAAAAGGAG+AGG + chr6_1:1147527-1147546 None:intergenic 30.0%
AGTAAATCCCTTTCACAAAA+AGG + chr6_1:1147541-1147560 None:intergenic 30.0%
ATAAAAAGAGATTGTGGTAC+TGG + chr6_1:1147597-1147616 None:intergenic 30.0%
CAAATGAGTGGTTAGATATA+GGG + chr6_1:1147633-1147652 None:intergenic 30.0%
TCAAATGAGTGGTTAGATAT+AGG + chr6_1:1147634-1147653 None:intergenic 30.0%
TGAAAAGGGGTTTAGATTTA+GGG + chr6_1:1147669-1147688 None:intergenic 30.0%
TTGAAAAGGGGTTTAGATTT+AGG + chr6_1:1147670-1147689 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG + chr6_1:1147682-1147701 None:intergenic 30.0%
!! AATTTGTTAGTTTGGTACCT+TGG - chr6_1:1147970-1147989 Msa0867900:CDS 30.0%
!!! TTTCCTCTTTGTTTTCTAAC+AGG - chr6_1:1148385-1148404 Msa0867900:intron 30.0%
CGTCATAGAGTTAATATTGA+TGG - chr6_1:1148500-1148519 Msa0867900:intron 30.0%
AATAATTACCTCAAGAACCA+AGG + chr6_1:1148552-1148571 None:intergenic 30.0%
TCACATGATATTAAGGAACA+TGG + chr6_1:1148588-1148607 None:intergenic 30.0%
AAGTTCCAATTCTTCTATGT+TGG + chr6_1:1148730-1148749 None:intergenic 30.0%
ACAATGGAAAGTTAATCATC+GGG + chr6_1:1148768-1148787 None:intergenic 30.0%
!!! GGGGTTGAGTTTTAGTTTAA+TGG - chr6_1:1143979-1143998 Msa0867900:three_prime_UTR 35.0%
TTTGCGTCTGATGTTTGAAT+TGG - chr6_1:1144083-1144102 Msa0867900:CDS 35.0%
GGTTAGATATTTCAGCTGTA+AGG + chr6_1:1144191-1144210 None:intergenic 35.0%
!! CCATTTTTGGGAACTTAATG+AGG + chr6_1:1144212-1144231 None:intergenic 35.0%
CCTCATTAAGTTCCCAAAAA+TGG - chr6_1:1144209-1144228 Msa0867900:intron 35.0%
TTCAAATGCCCTAATTCTTC+CGG + chr6_1:1144368-1144387 None:intergenic 35.0%
TCTACTATTTAGGCTGTGTT+TGG - chr6_1:1144446-1144465 Msa0867900:CDS 35.0%
CTACTATTTAGGCTGTGTTT+GGG - chr6_1:1144447-1144466 Msa0867900:CDS 35.0%
CAGTTGTCTTTATGTTGTCT+TGG - chr6_1:1144568-1144587 Msa0867900:intron 35.0%
GTTGTCTTTATGTTGTCTTG+GGG - chr6_1:1144570-1144589 Msa0867900:intron 35.0%
TAAGCTGGAACAACATATGT+AGG - chr6_1:1144605-1144624 Msa0867900:intron 35.0%
AATAAATAGAGGCAGATACG+TGG - chr6_1:1144815-1144834 Msa0867900:intron 35.0%
! TGAAGCACGTAGTTCATTTT+TGG - chr6_1:1144920-1144939 Msa0867900:intron 35.0%
!! GAAGCACGTAGTTCATTTTT+GGG - chr6_1:1144921-1144940 Msa0867900:intron 35.0%
!! AAGCACGTAGTTCATTTTTG+GGG - chr6_1:1144922-1144941 Msa0867900:intron 35.0%
! AGGGAAAGCTTTAACAAATG+TGG - chr6_1:1144954-1144973 Msa0867900:intron 35.0%
AAATCTACTACTATCACCAC+TGG + chr6_1:1145072-1145091 None:intergenic 35.0%
CTGAGCAATCATATTTATGG+TGG + chr6_1:1145099-1145118 None:intergenic 35.0%
CACCATAAATATGATTGCTC+AGG - chr6_1:1145097-1145116 Msa0867900:intron 35.0%
TGCCTGAGCAATCATATTTA+TGG + chr6_1:1145102-1145121 None:intergenic 35.0%
!! AAGGTTTTGTCTTATTAGCG+AGG - chr6_1:1145306-1145325 Msa0867900:intron 35.0%
!! AGGTTTTGTCTTATTAGCGA+GGG - chr6_1:1145307-1145326 Msa0867900:intron 35.0%
GGTCCAAAATAATCTGCAAA+CGG + chr6_1:1145377-1145396 None:intergenic 35.0%
AGGTCCTGCTTTCATAAAAT+GGG - chr6_1:1145448-1145467 Msa0867900:intron 35.0%
TTTCATAAAATGGGGTCAGT+GGG - chr6_1:1145457-1145476 Msa0867900:intron 35.0%
AATCTTAACCACTTAAGAGC+GGG + chr6_1:1145818-1145837 None:intergenic 35.0%
TCATTTATAATTTCCGCAGC+TGG - chr6_1:1145918-1145937 Msa0867900:CDS 35.0%
! ATGTTTCTACCAATACAGCA+GGG + chr6_1:1145985-1146004 None:intergenic 35.0%
! TATGTTTCTACCAATACAGC+AGG + chr6_1:1145986-1146005 None:intergenic 35.0%
!!! CGTTATGTTGATGGTTTTCA+AGG - chr6_1:1146028-1146047 Msa0867900:intron 35.0%
AAATCTGCTCTTGCTCATAT+TGG - chr6_1:1146064-1146083 Msa0867900:intron 35.0%
AATCTGCTCTTGCTCATATT+GGG - chr6_1:1146065-1146084 Msa0867900:intron 35.0%
!!! AGTTTTGGATAGAGTCCTTT+TGG - chr6_1:1146161-1146180 Msa0867900:intron 35.0%
!!! GCACTTGTCATTTTTCCAAA+TGG + chr6_1:1146337-1146356 None:intergenic 35.0%
CTGAGATTGTTTAAGTAGCA+TGG - chr6_1:1146360-1146379 Msa0867900:intron 35.0%
ACACATAGATATGCATGATC+AGG - chr6_1:1146417-1146436 Msa0867900:intron 35.0%
!!! AGCCAGAGTCTGTTTTAAAA+AGG + chr6_1:1146576-1146595 None:intergenic 35.0%
TTGTGTGCAACTGAAACTAT+AGG - chr6_1:1146625-1146644 Msa0867900:intron 35.0%
TGTGTGCAACTGAAACTATA+GGG - chr6_1:1146626-1146645 Msa0867900:intron 35.0%
!! AGCTTTCCTTTTTAAGGGTA+TGG - chr6_1:1146754-1146773 Msa0867900:intron 35.0%
!! ATTTAAGTTGCAACTGCCAA+TGG - chr6_1:1146803-1146822 Msa0867900:intron 35.0%
!! TTTAAGTTGCAACTGCCAAT+GGG - chr6_1:1146804-1146823 Msa0867900:intron 35.0%
! ACCATGCAATGTTTTCTTTC+AGG - chr6_1:1146985-1147004 Msa0867900:CDS 35.0%
ACCTGAAAGAAAACATTGCA+TGG + chr6_1:1146989-1147008 None:intergenic 35.0%
! ATGCAATGTTTTCTTTCAGG+TGG - chr6_1:1146988-1147007 Msa0867900:CDS 35.0%
ATCCTGGGAATATTCTTGTT+CGG - chr6_1:1147035-1147054 Msa0867900:CDS 35.0%
ACAGAATTGTCCTAATCCAA+AGG - chr6_1:1147231-1147250 Msa0867900:CDS 35.0%
TCAATGAAAGCCTTTGGATT+AGG + chr6_1:1147244-1147263 None:intergenic 35.0%
TAATCCAAAGGCTTTCATTG+AGG - chr6_1:1147243-1147262 Msa0867900:CDS 35.0%
ATTACCTCAATGAAAGCCTT+TGG + chr6_1:1147250-1147269 None:intergenic 35.0%
GGAAAAAAAGGAGAGGAATT+TGG + chr6_1:1147520-1147539 None:intergenic 35.0%
AATGTGAAAAAAGCAAAGGG+AGG - chr6_1:1147859-1147878 Msa0867900:CDS 35.0%
TGCACATTTATCTGCGTTTA+AGG + chr6_1:1148049-1148068 None:intergenic 35.0%
!!! CTGTCTCACATAGTTTTGTT+TGG - chr6_1:1148076-1148095 Msa0867900:CDS 35.0%
!!! TCTCACATAGTTTTGTTTGG+TGG - chr6_1:1148079-1148098 Msa0867900:CDS 35.0%
!!! CTCACATAGTTTTGTTTGGT+GGG - chr6_1:1148080-1148099 Msa0867900:CDS 35.0%
CTTCCTGTTAGAAAACAAAG+AGG + chr6_1:1148391-1148410 None:intergenic 35.0%
!!! CTTTGTTTTCTAACAGGAAG+TGG - chr6_1:1148391-1148410 Msa0867900:intron 35.0%
!!! TGGAAGAGGCATTTACTTTT+TGG - chr6_1:1148411-1148430 Msa0867900:intron 35.0%
!!! GGAAGAGGCATTTACTTTTT+GGG - chr6_1:1148412-1148431 Msa0867900:intron 35.0%
!!! GAAGAGGCATTTACTTTTTG+GGG - chr6_1:1148413-1148432 Msa0867900:intron 35.0%
AGCAATTACTTGAGAAAGTC+AGG - chr6_1:1148477-1148496 Msa0867900:intron 35.0%
! TGGTAATGTTTGTACTGTCA+TGG - chr6_1:1148520-1148539 Msa0867900:intron 35.0%
TTGTGCCAACATAGAAGAAT+TGG - chr6_1:1148722-1148741 Msa0867900:intron 35.0%
GACCTTTCTTACACAATTGA+TGG - chr6_1:1148903-1148922 Msa0867900:intron 35.0%
GTCCATCAATTGTGTAAGAA+AGG + chr6_1:1148908-1148927 None:intergenic 35.0%
!! TTACACAATTGATGGACTCA+TGG - chr6_1:1148911-1148930 Msa0867900:intron 35.0%
AAAAAACCTCCCTCTAATCA+AGG + chr6_1:1148939-1148958 None:intergenic 35.0%
!!! GAGGTTTTTTTCCGTTGTTA+AGG - chr6_1:1148949-1148968 Msa0867900:intron 35.0%
TTTCTCAAGAGCCTTAACAA+CGG + chr6_1:1148963-1148982 None:intergenic 35.0%
! TTAGGACACTGAGATGTTTT+GGG + chr6_1:1149005-1149024 None:intergenic 35.0%
AAAACATCTCAGTGTCCTAA+GGG - chr6_1:1149005-1149024 Msa0867900:intron 35.0%
GATGAACCAAGAAAGGAATT+GGG - chr6_1:1149197-1149216 Msa0867900:five_prime_UTR 35.0%
CAAATTCCCAATTCCTTTCT+TGG + chr6_1:1149206-1149225 None:intergenic 35.0%
! GTATGAAGTTCTTCTAGAGG+CGG + chr6_1:1143701-1143720 None:intergenic 40.0%
TCACCAATCGCACAAAACTA+AGG - chr6_1:1143729-1143748 Msa0867900:three_prime_UTR 40.0%
AAGGAGAGAGATTTCACCTT+GGG + chr6_1:1143812-1143831 None:intergenic 40.0%
AAAGGAGAGAGATTTCACCT+TGG + chr6_1:1143813-1143832 None:intergenic 40.0%
! TTCAACTTCTTGTCGCCTTT+TGG - chr6_1:1144395-1144414 Msa0867900:CDS 40.0%
!! GTGGTTCTGGTTTAAGTGAT+TGG - chr6_1:1144683-1144702 Msa0867900:intron 40.0%
TACGTGGAAGTGAGTAGAAA+TGG - chr6_1:1144831-1144850 Msa0867900:intron 40.0%
ACGTGGAAGTGAGTAGAAAT+GGG - chr6_1:1144832-1144851 Msa0867900:intron 40.0%
ACTTATACGGCATGTAGAAC+CGG + chr6_1:1144893-1144912 None:intergenic 40.0%
!!! ATTTTTGGGGCTTGCAACAA+GGG - chr6_1:1144935-1144954 Msa0867900:intron 40.0%
! TTTTCCACGCAATCTGAGAA+TGG + chr6_1:1145028-1145047 None:intergenic 40.0%
ATTCTCAGATTGCGTGGAAA+AGG - chr6_1:1145027-1145046 Msa0867900:intron 40.0%
!! TACAGAAAGTACTGTTCCAG+TGG - chr6_1:1145053-1145072 Msa0867900:intron 40.0%
! TTTGACTCGCTCTTATTTGC+TGG - chr6_1:1145133-1145152 Msa0867900:intron 40.0%
TATACAATCCTTCCTGTGGT+TGG + chr6_1:1145232-1145251 None:intergenic 40.0%
ATTCACTCCAACCATTGTGA+TGG - chr6_1:1145349-1145368 Msa0867900:intron 40.0%
TTCACTCCAACCATTGTGAT+GGG - chr6_1:1145350-1145369 Msa0867900:intron 40.0%
! GGACCGTTTGCAGATTATTT+TGG - chr6_1:1145371-1145390 Msa0867900:intron 40.0%
CATCGAACACTAGAAAAAGC+AGG - chr6_1:1145428-1145447 Msa0867900:intron 40.0%
CAGGTCCTGCTTTCATAAAA+TGG - chr6_1:1145447-1145466 Msa0867900:intron 40.0%
GGTCCTGCTTTCATAAAATG+GGG - chr6_1:1145449-1145468 Msa0867900:intron 40.0%
! TGACCCCATTTTATGAAAGC+AGG + chr6_1:1145455-1145474 None:intergenic 40.0%
CTTTCATAAAATGGGGTCAG+TGG - chr6_1:1145456-1145475 Msa0867900:intron 40.0%
AGATCTCGAGGAAAAAGATC+AGG + chr6_1:1145494-1145513 None:intergenic 40.0%
!! AGTGGTTTTGCTTGTTTACC+AGG + chr6_1:1145698-1145717 None:intergenic 40.0%
TGGTAAACAAGCAAAACCAC+TGG - chr6_1:1145697-1145716 Msa0867900:CDS 40.0%
TAAACAAGCAAAACCACTGG+TGG - chr6_1:1145700-1145719 Msa0867900:CDS 40.0%
TGTGGGAGAATCAATCAGAA+GGG - chr6_1:1145748-1145767 Msa0867900:CDS 40.0%
TTATAATTTCCGCAGCTGGA+AGG - chr6_1:1145922-1145941 Msa0867900:intron 40.0%
AGTGTCTCACGTTATGTTGA+TGG - chr6_1:1146019-1146038 Msa0867900:intron 40.0%
!! TGCACTTTTGAAGATGCTTC+TGG - chr6_1:1146093-1146112 Msa0867900:intron 40.0%
CTGAAACTATAGGGTGGTAT+AGG - chr6_1:1146635-1146654 Msa0867900:intron 40.0%
CTGGATCCATACCCTTAAAA+AGG + chr6_1:1146763-1146782 None:intergenic 40.0%
ATTCATGCAGATATGCATCC+TGG - chr6_1:1147019-1147038 Msa0867900:CDS 40.0%
TTCATGCAGATATGCATCCT+GGG - chr6_1:1147020-1147039 Msa0867900:CDS 40.0%
TCCTGGGAATATTCTTGTTC+GGG - chr6_1:1147036-1147055 Msa0867900:CDS 40.0%
! TGAACTCTCTGGTAGTGATA+GGG - chr6_1:1147126-1147145 Msa0867900:CDS 40.0%
ACGTCAAACAGAGGAACAAA+GGG + chr6_1:1147383-1147402 None:intergenic 40.0%
ACGACATAACATGTGAACAG+AGG + chr6_1:1147410-1147429 None:intergenic 40.0%
CTTGAGAGGAACACACAAAA+AGG + chr6_1:1147453-1147472 None:intergenic 40.0%
!! ATGCTAGTTGTTGACTTGAG+AGG + chr6_1:1147467-1147486 None:intergenic 40.0%
TGAGTGGTTAGATATAGGGA+CGG + chr6_1:1147629-1147648 None:intergenic 40.0%
AGCAAAGGGAGGTTACATTA+AGG - chr6_1:1147870-1147889 Msa0867900:CDS 40.0%
GCAAAGGGAGGTTACATTAA+GGG - chr6_1:1147871-1147890 Msa0867900:CDS 40.0%
! TTGTTAGTTTGGTACCTTGG+AGG - chr6_1:1147973-1147992 Msa0867900:CDS 40.0%
TGATTTATTGTGCATGGCTG+TGG - chr6_1:1148171-1148190 Msa0867900:intron 40.0%
ATCGTGCAAGATCATAGTCA+AGG + chr6_1:1148354-1148373 None:intergenic 40.0%
TTTCTAACAGGAAGTGGAAG+AGG - chr6_1:1148397-1148416 Msa0867900:intron 40.0%
ATGAACTATGTCACCTTCTG+GGG + chr6_1:1148441-1148460 None:intergenic 40.0%
GATGAACTATGTCACCTTCT+GGG + chr6_1:1148442-1148461 None:intergenic 40.0%
GGTGTGGTCACATGATATTA+AGG + chr6_1:1148595-1148614 None:intergenic 40.0%
! CATTGGCTGACTGAAAACTA+GGG - chr6_1:1148628-1148647 Msa0867900:intron 40.0%
! TTTGCTGCTTAGAGCTGATT+GGG - chr6_1:1148875-1148894 Msa0867900:intron 40.0%
! TAGGACACTGAGATGTTTTG+GGG + chr6_1:1149004-1149023 None:intergenic 40.0%
! CTTAGGACACTGAGATGTTT+TGG + chr6_1:1149006-1149025 None:intergenic 40.0%
CAAAACATCTCAGTGTCCTA+AGG - chr6_1:1149004-1149023 Msa0867900:intron 40.0%
ATTCCTTTCTTGGTTCATCG+TGG + chr6_1:1149196-1149215 None:intergenic 40.0%
CGATGAACCAAGAAAGGAAT+TGG - chr6_1:1149196-1149215 Msa0867900:five_prime_UTR 40.0%
!!! GAGCCTTAGTTTTGTGCGAT+TGG + chr6_1:1143735-1143754 None:intergenic 45.0%
AGCATGTTCTCTTACTCCCA+AGG - chr6_1:1143793-1143812 Msa0867900:three_prime_UTR 45.0%
AAGTTCCCAAAAATGGGCAG+TGG - chr6_1:1144216-1144235 Msa0867900:intron 45.0%
!! AGTCTCCACTGCCCATTTTT+GGG + chr6_1:1144224-1144243 None:intergenic 45.0%
AGTGGAGACTCCAAGAAATG+AGG - chr6_1:1144234-1144253 Msa0867900:intron 45.0%
! AAGTTTAGGTGAGTTGGGTC+TGG - chr6_1:1144299-1144318 Msa0867900:intron 45.0%
! AGTTTAGGTGAGTTGGGTCT+GGG - chr6_1:1144300-1144319 Msa0867900:intron 45.0%
! GAGCATTGCCGGAAGAATTA+GGG - chr6_1:1144357-1144376 Msa0867900:intron 45.0%
!! CTTGTCGCCTTTTGGAAGAT+TGG - chr6_1:1144403-1144422 Msa0867900:CDS 45.0%
GGGAGCTTATTGAGATAAGC+TGG - chr6_1:1144590-1144609 Msa0867900:intron 45.0%
TAGAAATGGGCCAATTGTCC+CGG - chr6_1:1144845-1144864 Msa0867900:intron 45.0%
!!! CATTTTTGGGGCTTGCAACA+AGG - chr6_1:1144934-1144953 Msa0867900:intron 45.0%
CGCATATACAATCCTTCCTG+TGG + chr6_1:1145236-1145255 None:intergenic 45.0%
TTGTATATGCGTGCCCAAGA+TGG - chr6_1:1145245-1145264 Msa0867900:intron 45.0%
TGTATATGCGTGCCCAAGAT+GGG - chr6_1:1145246-1145265 Msa0867900:intron 45.0%
CTAGTGTTCGATGAACAACG+CGG + chr6_1:1145421-1145440 None:intergenic 45.0%
GTGTAGCTGAAACTATGCTC+AGG + chr6_1:1145551-1145570 None:intergenic 45.0%
GAAGAGATTCCTGTTGCATC+TGG - chr6_1:1145629-1145648 Msa0867900:intron 45.0%
TAATGTAGCACGGTGCACTT+GGG + chr6_1:1145663-1145682 None:intergenic 45.0%
TTAATGTAGCACGGTGCACT+TGG + chr6_1:1145664-1145683 None:intergenic 45.0%
ACCAGGATGTCTAACCTTCA+CGG + chr6_1:1145729-1145748 None:intergenic 45.0%
AAGGTTAGACATCCTGGTGT+GGG - chr6_1:1145731-1145750 Msa0867900:CDS 45.0%
GTGTGGGAGAATCAATCAGA+AGG - chr6_1:1145747-1145766 Msa0867900:CDS 45.0%
CTTAAGAGCGGGAATGAACA+TGG + chr6_1:1145807-1145826 None:intergenic 45.0%
TGTTCATTCCCGCTCTTAAG+TGG - chr6_1:1145807-1145826 Msa0867900:CDS 45.0%
TTCCCTAGCAAGGTCAACTT+GGG + chr6_1:1145879-1145898 None:intergenic 45.0%
AAGAAACATCCTTCCAGCTG+CGG + chr6_1:1145934-1145953 None:intergenic 45.0%
CAAGTGGATAGACAGGCTTA+GGG + chr6_1:1145958-1145977 None:intergenic 45.0%
ACAAGTGGATAGACAGGCTT+AGG + chr6_1:1145959-1145978 None:intergenic 45.0%
GCTCTTCGTTGGGATTAGAA+AGG - chr6_1:1146599-1146618 Msa0867900:intron 45.0%
GTGCAACTGAAACTATAGGG+TGG - chr6_1:1146629-1146648 Msa0867900:intron 45.0%
! TTTAAGGGTATGGATCCAGC+TGG - chr6_1:1146764-1146783 Msa0867900:intron 45.0%
! TCACTCTCTAAAAGTCCAGC+TGG + chr6_1:1146782-1146801 None:intergenic 45.0%
CCTGGGAATATTCTTGTTCG+GGG - chr6_1:1147037-1147056 Msa0867900:CDS 45.0%
! CTGAACTCTCTGGTAGTGAT+AGG - chr6_1:1147125-1147144 Msa0867900:CDS 45.0%
! TTTTCAAATCTGTTGCCCGC+CGG - chr6_1:1147164-1147183 Msa0867900:CDS 45.0%
CAGAGGAACAAAGGGAAGAA+GGG + chr6_1:1147375-1147394 None:intergenic 45.0%
ACAGAGGAACAAAGGGAAGA+AGG + chr6_1:1147376-1147395 None:intergenic 45.0%
CACGTCAAACAGAGGAACAA+AGG + chr6_1:1147384-1147403 None:intergenic 45.0%
CTTTGTTCCTCTGTTTGACG+TGG - chr6_1:1147382-1147401 Msa0867900:CDS 45.0%
AAAGGTTCAGCGAGGAAACA+AGG + chr6_1:1147435-1147454 None:intergenic 45.0%
ACACACAAAAAGGTTCAGCG+AGG + chr6_1:1147443-1147462 None:intergenic 45.0%
AAAAGGAGAGGAATTTGGCC+TGG + chr6_1:1147515-1147534 None:intergenic 45.0%
TGGTTAGATATAGGGACGGA+GGG + chr6_1:1147625-1147644 None:intergenic 45.0%
AGGGAGGTTACATTAAGGGA+CGG - chr6_1:1147875-1147894 Msa0867900:CDS 45.0%
AGGTTACATTAAGGGACGGA+GGG - chr6_1:1147879-1147898 Msa0867900:CDS 45.0%
GGATGAACTATGTCACCTTC+TGG + chr6_1:1148443-1148462 None:intergenic 45.0%
ATGCTTGTAACTGGTAGGTG+TGG + chr6_1:1148611-1148630 None:intergenic 45.0%
CACCTACCAGTTACAAGCAT+TGG - chr6_1:1148611-1148630 Msa0867900:intron 45.0%
AGCCAATGCTTGTAACTGGT+AGG + chr6_1:1148616-1148635 None:intergenic 45.0%
AGTCAGCCAATGCTTGTAAC+TGG + chr6_1:1148620-1148639 None:intergenic 45.0%
!! GCATTGGCTGACTGAAAACT+AGG - chr6_1:1148627-1148646 Msa0867900:intron 45.0%
! CTTTGCTGCTTAGAGCTGAT+TGG - chr6_1:1148874-1148893 Msa0867900:intron 45.0%
ACTCATGGCTCCTTGATTAG+AGG - chr6_1:1148926-1148945 Msa0867900:intron 45.0%
CTCATGGCTCCTTGATTAGA+GGG - chr6_1:1148927-1148946 Msa0867900:intron 45.0%
!! AGGACACTGAGATGTTTTGG+GGG + chr6_1:1149003-1149022 None:intergenic 45.0%
CAAAGAAACGGCAGTCTTGA+GGG + chr6_1:1149033-1149052 None:intergenic 45.0%
ACAAAGAAACGGCAGTCTTG+AGG + chr6_1:1149034-1149053 None:intergenic 45.0%
! GAGTCTCCACTGCCCATTTT+TGG + chr6_1:1144225-1144244 None:intergenic 50.0%
! GTTTAGGTGAGTTGGGTCTG+GGG - chr6_1:1144301-1144320 Msa0867900:intron 50.0%
TTGGGTCTGGGGATTTACGA+GGG - chr6_1:1144312-1144331 Msa0867900:intron 50.0%
! CTCAAGAGTTCGAGCATTGC+CGG - chr6_1:1144346-1144365 Msa0867900:intron 50.0%
! CGAGCATTGCCGGAAGAATT+AGG - chr6_1:1144356-1144375 Msa0867900:intron 50.0%
TTTGGTCCAACCGGGACAAT+TGG + chr6_1:1144858-1144877 None:intergenic 50.0%
! TGGTGGGTATTTGGTCCAAC+CGG + chr6_1:1144867-1144886 None:intergenic 50.0%
CACACCATTCTCAGATTGCG+TGG - chr6_1:1145021-1145040 Msa0867900:intron 50.0%
! CGCTCTTATTTGCTGGTACC+TGG - chr6_1:1145140-1145159 Msa0867900:intron 50.0%
TTGCATTCTCCCAGCGAAGT+TGG - chr6_1:1145189-1145208 Msa0867900:intron 50.0%
TGCATTCTCCCAGCGAAGTT+GGG - chr6_1:1145190-1145209 Msa0867900:intron 50.0%
TGCAGAACGTTTCCAACCAC+AGG - chr6_1:1145217-1145236 Msa0867900:intron 50.0%
GAACGTTTCCAACCACAGGA+AGG - chr6_1:1145221-1145240 Msa0867900:intron 50.0%
AACGGTCCCATCACAATGGT+TGG + chr6_1:1145359-1145378 None:intergenic 50.0%
TGCAAACGGTCCCATCACAA+TGG + chr6_1:1145363-1145382 None:intergenic 50.0%
AAAAAGATCAGGCCGCGTAG+CGG + chr6_1:1145483-1145502 None:intergenic 50.0%
AGCTGAGTGCATAGATCTCG+AGG + chr6_1:1145506-1145525 None:intergenic 50.0%
GCAATGCTTCCAGATGCAAC+AGG + chr6_1:1145641-1145660 None:intergenic 50.0%
GAAGGTTAGACATCCTGGTG+TGG - chr6_1:1145730-1145749 Msa0867900:CDS 50.0%
! CTGATTGATTCTCCCACACC+AGG + chr6_1:1145746-1145765 None:intergenic 50.0%
! TGTCCCAAGTTGACCTTGCT+AGG - chr6_1:1145873-1145892 Msa0867900:CDS 50.0%
! GTCCCAAGTTGACCTTGCTA+GGG - chr6_1:1145874-1145893 Msa0867900:CDS 50.0%
CTTCCCTAGCAAGGTCAACT+TGG + chr6_1:1145880-1145899 None:intergenic 50.0%
AATACAGCAGGGTGCACAAG+TGG + chr6_1:1145974-1145993 None:intergenic 50.0%
ACTTGTGCACCCTGCTGTAT+TGG - chr6_1:1145973-1145992 Msa0867900:intron 50.0%
CCCCGAACAAGAATATTCCC+AGG + chr6_1:1147040-1147059 None:intergenic 50.0%
TTTCAAATCTGTTGCCCGCC+GGG - chr6_1:1147165-1147184 Msa0867900:CDS 50.0%
AATGTGAGCAGTGAGCCTAC+AGG + chr6_1:1147307-1147326 None:intergenic 50.0%
AGAGGAACCACGTCAAACAG+AGG + chr6_1:1147392-1147411 None:intergenic 50.0%
GTATTCTAACTGGGCCAACC+AGG - chr6_1:1147494-1147513 Msa0867900:CDS 50.0%
GTGGTTAGATATAGGGACGG+AGG + chr6_1:1147626-1147645 None:intergenic 50.0%
GAGGTTACATTAAGGGACGG+AGG - chr6_1:1147878-1147897 Msa0867900:CDS 50.0%
GTTTGGTACCTTGGAGGCTT+TGG - chr6_1:1147979-1147998 Msa0867900:CDS 50.0%
GAATCAGTCCAAAGCCTCCA+AGG + chr6_1:1147990-1148009 None:intergenic 50.0%
AGTTCATCCTGCAGAGTGCA+TGG - chr6_1:1148454-1148473 Msa0867900:intron 50.0%
AATTGCTCCATGCACTCTGC+AGG + chr6_1:1148464-1148483 None:intergenic 50.0%
! TACTGTCATGGTGACGACCT+TGG - chr6_1:1148532-1148551 Msa0867900:intron 50.0%
GCTTAGAGCTGATTGGGCAA+AGG - chr6_1:1148881-1148900 Msa0867900:intron 50.0%
ATGGCTCCTTGATTAGAGGG+AGG - chr6_1:1148930-1148949 Msa0867900:intron 50.0%
GTTGGGTCTGGGGATTTACG+AGG - chr6_1:1144311-1144330 Msa0867900:intron 55.0%
CGGCAATGCTCGAACTCTTG+AGG + chr6_1:1144348-1144367 None:intergenic 55.0%
AATGGGCCAATTGTCCCGGT+TGG - chr6_1:1144849-1144868 Msa0867900:intron 55.0%
GGTGGGTATTTGGTCCAACC+GGG + chr6_1:1144866-1144885 None:intergenic 55.0%
GACCAAATACCCACCACTGC+CGG - chr6_1:1144871-1144890 Msa0867900:intron 55.0%
!! AACCGGCAGTGGTGGGTATT+TGG + chr6_1:1144876-1144895 None:intergenic 55.0%
CATGTAGAACCGGCAGTGGT+GGG + chr6_1:1144883-1144902 None:intergenic 55.0%
GATTGCTCAGGCAGTGAGCT+TGG - chr6_1:1145109-1145128 Msa0867900:intron 55.0%
GCATTCTCCCAGCGAAGTTG+GGG - chr6_1:1145191-1145210 Msa0867900:intron 55.0%
TGCATCTCCCCAACTTCGCT+GGG + chr6_1:1145201-1145220 None:intergenic 55.0%
GCCGTGAAGGTTAGACATCC+TGG - chr6_1:1145725-1145744 Msa0867900:CDS 55.0%
AATGGGCAGCTTCCCTAGCA+AGG + chr6_1:1145889-1145908 None:intergenic 55.0%
GGGTGCACAAGTGGATAGAC+AGG + chr6_1:1145965-1145984 None:intergenic 55.0%
TCTGGCTGTCGCTCTTCGTT+GGG - chr6_1:1146589-1146608 Msa0867900:intron 55.0%
GGCATGACTGCTGAACTCTC+TGG - chr6_1:1147115-1147134 Msa0867900:CDS 55.0%
ACTGAGTGCGCATTCTGCAG+CGG + chr6_1:1147200-1147219 None:intergenic 55.0%
GGAGAGGAATTTGGCCTGGT+TGG + chr6_1:1147511-1147530 None:intergenic 55.0%
!!! ACTTTTTGGGGCACCCCAGA+AGG - chr6_1:1148425-1148444 Msa0867900:intron 55.0%
! GGTGACGACCTTGGTTCTTG+AGG - chr6_1:1148541-1148560 Msa0867900:intron 55.0%
TGGCAGCGAAAGCTTGATCC+TGG - chr6_1:1148825-1148844 Msa0867900:intron 55.0%
GGCAGCGAAAGCTTGATCCT+GGG - chr6_1:1148826-1148845 Msa0867900:intron 55.0%
GTCTGCATCACATCGTACCC+AGG + chr6_1:1148846-1148865 None:intergenic 55.0%
GCGCCACGATGAACCAAGAA+AGG - chr6_1:1149190-1149209 Msa0867900:five_prime_UTR 55.0%
GCATGTAGAACCGGCAGTGG+TGG + chr6_1:1144884-1144903 None:intergenic 60.0%
ACGGCATGTAGAACCGGCAG+TGG + chr6_1:1144887-1144906 None:intergenic 60.0%
CTGCATCTCCCCAACTTCGC+TGG + chr6_1:1145202-1145221 None:intergenic 60.0%
ACCACTGGTGGTTGCCGTGA+AGG - chr6_1:1145712-1145731 Msa0867900:CDS 60.0%
ACCTTCACGGCAACCACCAG+TGG + chr6_1:1145716-1145735 None:intergenic 60.0%
CTCTGGCTGTCGCTCTTCGT+TGG - chr6_1:1146588-1146607 Msa0867900:intron 60.0%
AAATCTGTTGCCCGCCGGGA+TGG - chr6_1:1147169-1147188 Msa0867900:CDS 60.0%
GTGCGCATTCTGCAGCGGTA+CGG + chr6_1:1147195-1147214 None:intergenic 60.0%
GCAGTCTTGAGGGAGCCCTT+AGG + chr6_1:1149023-1149042 None:intergenic 60.0%
CTGCAGCGGTACGGCCATCC+CGG + chr6_1:1147186-1147205 None:intergenic 70.0%
GGGGTCAGTGGGCCGCTACG+CGG - chr6_1:1145468-1145487 Msa0867900:intron 75.0%
AGCGGTACGGCCATCCCGGC+GGG + chr6_1:1147182-1147201 None:intergenic 75.0%
CAGCGGTACGGCCATCCCGG+CGG + chr6_1:1147183-1147202 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 1143667 1149279 1143667 ID=Msa0867900;Name=Msa0867900
chr6_1 mRNA 1143667 1149279 1143667 ID=Msa0867900-mRNA-1;Parent=Msa0867900;Name=Msa0867900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=155|1|1|1|0.75|0.6|5|338|624
chr6_1 exon 1143667 1144124 1143667 ID=Msa0867900-mRNA-1:exon:316;Parent=Msa0867900-mRNA-1
chr6_1 exon 1144384 1144539 1144384 ID=Msa0867900-mRNA-1:exon:315;Parent=Msa0867900-mRNA-1
chr6_1 exon 1145682 1145939 1145682 ID=Msa0867900-mRNA-1:exon:314;Parent=Msa0867900-mRNA-1
chr6_1 exon 1146832 1148179 1146832 ID=Msa0867900-mRNA-1:exon:313;Parent=Msa0867900-mRNA-1
chr6_1 exon 1149132 1149279 1149132 ID=Msa0867900-mRNA-1:exon:312;Parent=Msa0867900-mRNA-1
chr6_1 five_prime_UTR 1149132 1149279 1149132 ID=Msa0867900-mRNA-1:five_prime_utr;Parent=Msa0867900-mRNA-1
chr6_1 five_prime_UTR 1148173 1148179 1148173 ID=Msa0867900-mRNA-1:five_prime_utr;Parent=Msa0867900-mRNA-1
chr6_1 CDS 1146832 1148172 1146832 ID=Msa0867900-mRNA-1:cds;Parent=Msa0867900-mRNA-1
chr6_1 CDS 1145682 1145939 1145682 ID=Msa0867900-mRNA-1:cds;Parent=Msa0867900-mRNA-1
chr6_1 CDS 1144384 1144539 1144384 ID=Msa0867900-mRNA-1:cds;Parent=Msa0867900-mRNA-1
chr6_1 CDS 1144005 1144124 1144005 ID=Msa0867900-mRNA-1:cds;Parent=Msa0867900-mRNA-1
chr6_1 three_prime_UTR 1143667 1144004 1143667 ID=Msa0867900-mRNA-1:three_prime_utr;Parent=Msa0867900-mRNA-1
Gene Sequence

>Msa0867900

ATGCTTAGAGCGATAAAGAGAGCTGCCCAGTCCGTTCATAAAATAAATAGAGGCAGATACGTGGAAGTGAGTAGAAATGGGCCAATTGTCCCGGTTGGACCAAATACCCACCACTGCCGGTTCTACATGCCGTATAAGTTTCATAATGAAGCACGTAGTTCATTTTTGGGGCTTGCAACAAGGGAAAGCTTTAACAAATGTGGTTCTTTTAGAAACTTTTGTGTAAGATCAGCGAGTAATGAATTCACACACCATTCTCAGATTGCGTGGAAAAGGCTGTACAGAAAGTACTGTTCCAGTGGTGATAGTAGTAGATTTTCTCCCACCATAAATATGATTGCTCAGGCAGTGAGCTTGGCTTTGACTCGCTCTTATTTGCTGGTACCTGGTATTTTTGCATTTACATGTGGAGAGCTTGCATTCTCCCAGCGAAGTTGGGGAGATGCAGAACGTTTCCAACCACAGGAAGGATTGTATATGCGTGCCCAAGATGGGTATAATTACATGTTTACATTTACGTTCATGATAGTTGAAGGTTTTGTCTTATTAGCGAGGGCTCTATATCTAGCAATATTATTCACTCCAACCATTGTGATGGGACCGTTTGCAGATTATTTTGGACCAAATTTTAGGAAACTATGGCTCCGCGTTGTTCATCGAACACTAGAAAAAGCAGGTCCTGCTTTCATAAAATGGGGTCAGTGGGCCGCTACGCGGCCTGATCTTTTTCCTCGAGATCTATGCACTCAGCTTTCTGAACTTCATAGTAAAGCTCCTGAGCATAGTTTCAGCTACACAAAGAAAACCATTGAAAAAGCATTTAACCGAAAACTTCCCGAAATTTTTGACAATTTTGAAGAGATTCCTGTTGCATCTGGAAGCATTGCCCAAGTGCACCGTGCTACATTAAAATATCGTTATCCTGGTAAACAAGCAAAACCACTGGTGGTTGCCGTGAAGGTTAGACATCCTGGTGTGGGAGAATCAATCAGAAGGGATTTTGCTATTATCAATACGGCAGCAAAAATTTCCATGTTCATTCCCGCTCTTAAGTGGTTAAGATTAGATGAGAGTGTACAACAATTTGCAGTTTTTATGATGTCCCAAGTTGACCTTGCTAGGGAAGCTGCCCATTTGAACCGCTTCATTTATAATTTCCGCAGCTGGAAGGATGTTTCTTTCCCTAAGCCTGTCTATCCACTTGTGCACCCTGCTGTATTGGTAGAAACATATGAAAAGGGAGAAAGTGTCTCACGTTATGTTGATGGTTTTCAAGGACAAGAACATTTTAAATCTGCTCTTGCTCATATTGGGACTCATGCACTTTTGAAGATGCTTCTGGTGGACAACTTCATTCATGCAGATATGCATCCTGGGAATATTCTTGTTCGGGGCAAGTCTAGCAAACGACTTTTCAGATCAAAGCCTCATGTAATTTTCTTAGACGTAGGCATGACTGCTGAACTCTCTGGTAGTGATAGGGTAAATTTACTGGAATTTTTCAAATCTGTTGCCCGCCGGGATGGCCGTACCGCTGCAGAATGCGCACTCAGTTTATCGAAGAAACAGAATTGTCCTAATCCAAAGGCTTTCATTGAGGAAGTGGAAGAGGCATTTACTTTTTGGGGCACCCCAGAAGGTGACATAGTTCATCCTGCAGAGTGCATGGAGCAATTACTTGAGAAAGTCAGGCGTCATAGAGTTAATATTGATGGTAATGTTTGTACTGTCATGGTGACGACCTTGGTTCTTGAGGGTTGGCAGCGAAAGCTTGATCCTGGGTACGATGTGATGCAGACGCTGCAGACTTTGCTGCTTAGAGCTGATTGGGCAAAGGACCTTTCTTACACAATTGATGGACTCATGGCTCCTTGA
Protein sequence

>Msa0867900

MLRAIKRAAQSVHKINRGRYVEVSRNGPIVPVGPNTHHCRFYMPYKFHNEARSSFLGLATRESFNKCGSFRNFCVRSASNEFTHHSQIAWKRLYRKYCSSGDSSRFSPTINMIAQAVSLALTRSYLLVPGIFAFTCGELAFSQRSWGDAERFQPQEGLYMRAQDGYNYMFTFTFMIVEGFVLLARALYLAILFTPTIVMGPFADYFGPNFRKLWLRVVHRTLEKAGPAFIKWGQWAATRPDLFPRDLCTQLSELHSKAPEHSFSYTKKTIEKAFNRKLPEIFDNFEEIPVASGSIAQVHRATLKYRYPGKQAKPLVVAVKVRHPGVGESIRRDFAIINTAAKISMFIPALKWLRLDESVQQFAVFMMSQVDLAREAAHLNRFIYNFRSWKDVSFPKPVYPLVHPAVLVETYEKGESVSRYVDGFQGQEHFKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRGKSSKRLFRSKPHVIFLDVGMTAELSGSDRVNLLEFFKSVARRDGRTAAECALSLSKKQNCPNPKAFIEEVEEAFTFWGTPEGDIVHPAECMEQLLEKVRRHRVNIDGNVCTVMVTTLVLEGWQRKLDPGYDVMQTLQTLLLRADWAKDLSYTIDGLMAP*