AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0311870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311870 MtrunA17_Chr2g0281061 98.558 624 9 0 1 624 1 624 0.0 1285
Msa0311870 MtrunA17_Chr4g0048521 75.598 627 148 2 1 624 6 630 0.0 978
Msa0311870 MtrunA17_Chr8g0360981 59.008 605 224 5 31 624 31 622 0.0 718
Msa0311870 MtrunA17_Chr3g0120791 29.206 315 194 7 214 523 203 493 2.76e-32 132
Msa0311870 MtrunA17_Chr3g0129101 29.605 304 188 7 211 508 200 483 3.05e-29 123
Msa0311870 MtrunA17_Chr8g0382921 28.667 300 188 7 211 504 191 470 3.41e-27 117
Msa0311870 MtrunA17_Chr3g0136721 24.427 393 263 8 221 600 141 512 7.44e-25 109
Msa0311870 MtrunA17_Chr6g0465161 27.273 385 246 8 218 598 132 486 1.61e-23 105
Msa0311870 MtrunA17_Chr4g0012061 27.425 299 184 6 224 514 161 434 1.54e-22 102
Msa0311870 MtrunA17_Chr5g0428451 25.948 343 228 8 213 550 126 447 7.22e-22 99.8
Msa0311870 MtrunA17_Chr1g0148121 28.269 283 179 6 216 494 132 394 4.30e-21 97.8
Msa0311870 MtrunA17_Chr1g0147481 26.667 345 203 11 192 508 86 408 2.19e-19 92.8
Msa0311870 MtrunA17_Chr1g0199921 26.923 338 211 7 217 539 202 518 5.90e-19 91.3
Msa0311870 MtrunA17_Chr1g0169361 25.342 292 194 6 218 508 187 455 8.76e-19 90.9
Msa0311870 MtrunA17_Chr4g0057941 27.414 321 189 10 226 529 79 372 1.82e-18 88.6
Msa0311870 MtrunA17_Chr3g0113361 27.500 320 192 12 224 524 96 394 1.39e-17 86.3
Msa0311870 MtrunA17_Chr7g0230671 26.761 284 189 6 226 508 151 416 1.74e-17 86.7
Msa0311870 MtrunA17_Chr5g0433911 25.965 285 188 8 229 510 77 341 8.00e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311870 AT1G11390.1 72.172 557 143 4 71 624 77 624 0.0 851
Msa0311870 AT1G61640.1 64.991 557 190 4 71 624 67 621 0.0 750
Msa0311870 AT1G61640.3 63.514 518 184 4 71 585 67 582 0.0 676
Msa0311870 AT1G61640.2 57.527 372 155 2 71 441 67 436 2.97e-149 440
Msa0311870 AT3G07700.3 29.393 313 194 7 214 523 192 480 4.23e-30 126
Msa0311870 AT3G07700.1 29.393 313 194 7 214 523 192 480 4.59e-30 126
Msa0311870 AT3G07700.2 29.393 313 194 7 214 523 192 480 4.59e-30 126
Msa0311870 AT3G07700.4 29.393 313 194 7 214 523 192 480 4.59e-30 126
Msa0311870 AT5G64940.1 29.276 304 189 7 211 508 215 498 2.08e-28 121
Msa0311870 AT5G64940.2 29.276 304 189 7 211 508 215 498 2.08e-28 121
Msa0311870 AT5G24970.2 25.618 445 269 12 186 600 148 560 1.50e-26 115
Msa0311870 AT5G24970.3 25.618 445 269 12 186 600 109 521 1.56e-26 115
Msa0311870 AT1G79600.1 29.110 292 188 6 218 508 150 423 5.76e-26 113
Msa0311870 AT5G24970.1 25.169 445 268 13 186 600 109 518 1.78e-23 105
Msa0311870 AT1G65950.2 29.730 296 186 8 177 463 53 335 2.45e-23 103
Msa0311870 AT1G65950.1 29.730 296 186 8 177 463 53 335 4.34e-23 103
Msa0311870 AT1G71810.1 25.654 382 256 7 218 598 123 477 2.23e-21 99.4
Msa0311870 AT4G24810.6 27.628 333 190 10 218 527 25 329 3.82e-20 94.0
Msa0311870 AT4G24810.1 27.628 333 190 10 218 527 25 329 3.82e-20 94.0
Msa0311870 AT4G24810.4 27.900 319 181 9 218 515 25 315 4.04e-20 92.0
Msa0311870 AT4G24810.2 27.164 335 193 9 218 529 68 374 4.24e-20 94.4
Msa0311870 AT4G24810.5 29.352 293 158 9 218 489 25 289 1.13e-19 90.9
Msa0311870 AT5G50330.1 25.872 344 212 10 226 550 76 395 1.26e-19 92.8
Msa0311870 AT4G31390.1 27.365 296 175 8 216 499 168 435 1.31e-19 93.6
Msa0311870 AT3G24190.1 25.581 301 193 8 211 508 191 463 1.59e-19 93.6
Msa0311870 AT4G24810.3 27.193 342 191 11 218 529 25 338 5.04e-19 90.5
Msa0311870 AT2G39190.2 22.388 402 272 8 217 599 201 581 1.83e-18 90.1
Msa0311870 AT5G05200.1 23.907 343 235 8 213 550 127 448 9.01e-18 87.4
Msa0311870 AT5G24810.1 26.861 309 184 8 216 508 100 382 2.39e-16 83.6
Msa0311870 AT2G40090.1 25.817 306 195 12 224 514 98 386 2.14e-13 73.6
Msa0311870 AT5G24810.2 25.588 340 180 10 216 508 100 413 5.07e-13 73.2
Msa0311870 AT5G50330.2 23.547 344 204 10 226 550 76 379 6.33e-13 71.6
Msa0311870 AT4G31390.3 25.475 263 156 8 249 499 2 236 1.14e-11 67.8
Msa0311870 AT2G39190.1 27.108 166 112 2 217 382 201 357 3.99e-11 65.5

Find 170 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTCCCAATTCCTTTCT+TGG 0.184162 2_4:+6814064 None:intergenic
GGACCGTTTGCAGATTATTT+TGG 0.196932 2_4:-6817909 Msa0311870:CDS
TGCTAGTTTGATGAAGAATT+TGG 0.231329 2_4:+6819508 None:intergenic
TGCCTGAGCAATCATATTTA+TGG 0.231958 2_4:+6818181 None:intergenic
CTTAGGACACTGAGATGTTT+TGG 0.237086 2_4:+6814272 None:intergenic
AAATCTGCTCTTGCTCATAT+TGG 0.237300 2_4:-6817216 Msa0311870:CDS
AGCCATAGTTTCCTAAAATT+TGG 0.244909 2_4:+6817885 None:intergenic
CAGGTCCTGCTTTCATAAAA+TGG 0.265236 2_4:-6817833 Msa0311870:CDS
TCCTGGGAATATTCTTGTTC+GGG 0.277946 2_4:-6816239 Msa0311870:CDS
AAATGAATTTCTTGGGCCTT+AGG 0.287922 2_4:-6819627 None:intergenic
TAGTGATAGGGTAAATTTAT+TGG 0.290513 2_4:-6816137 Msa0311870:CDS
GACCTTTCTTACACAATTGA+TGG 0.297388 2_4:-6814372 Msa0311870:CDS
TTTGACTCGCTCTTATTTGC+TGG 0.307748 2_4:-6818147 Msa0311870:CDS
CGATGAACCAAGAAAGGAAT+TGG 0.316206 2_4:-6814071 Msa0311870:three_prime_UTR
GGATGAACTATGTCACCTTC+TGG 0.327276 2_4:+6814835 None:intergenic
AATCTGCTCTTGCTCATATT+GGG 0.336729 2_4:-6817215 Msa0311870:CDS
TCAATGAAAGCCTTTGGATT+AGG 0.336903 2_4:+6816034 None:intergenic
CTGCATCTCCCCAACTTCGC+TGG 0.337075 2_4:+6818081 None:intergenic
GCTTCATTATGAAACTTATA+CGG 0.339442 2_4:+6818377 None:intergenic
CTGAACTCTCTGGTAGTGAT+AGG 0.345467 2_4:-6816150 Msa0311870:CDS
ATTACCTCAATGAAAGCCTT+TGG 0.353972 2_4:+6816028 None:intergenic
ATCCTGGGAATATTCTTGTT+CGG 0.355681 2_4:-6816240 Msa0311870:CDS
TGCATTCTCCCAGCGAAGTT+GGG 0.356054 2_4:-6818090 Msa0311870:CDS
AGTGTCTCACGTTATGTTGA+TGG 0.359513 2_4:-6817261 Msa0311870:CDS
CGCTCTTATTTGCTGGTACC+TGG 0.380022 2_4:-6818140 Msa0311870:CDS
TACGTGGAAGTGAGTAGAAA+TGG 0.384419 2_4:-6818449 Msa0311870:CDS
CTTTGCTGCTTAGAGCTGAT+TGG 0.385374 2_4:-6814401 Msa0311870:CDS
TATAAATGAAGCGGTTCAAA+TGG 0.389020 2_4:+6817376 None:intergenic
TTGAAAATTAAACAAAATAC+AGG 0.391296 2_4:+6814181 None:intergenic
AATGAATTTCTTGGGCCTTA+GGG 0.393088 2_4:-6819626 None:intergenic
AGGTCCTGCTTTCATAAAAT+GGG 0.393124 2_4:-6817832 Msa0311870:CDS
TGGTGGGTATTTGGTCCAAC+CGG 0.393551 2_4:+6818416 None:intergenic
ACATGTAATTATACCCATCT+TGG 0.394243 2_4:+6818021 None:intergenic
ACAAGTGGATAGACAGGCTT+AGG 0.396500 2_4:+6817324 None:intergenic
AACCGGCAGTGGTGGGTATT+TGG 0.401639 2_4:+6818407 None:intergenic
GATGAACTATGTCACCTTCT+GGG 0.406064 2_4:+6814836 None:intergenic
CTTCCCTAGCAAGGTCAACT+TGG 0.407373 2_4:+6817403 None:intergenic
TTTGCTGCTTAGAGCTGATT+GGG 0.407859 2_4:-6814400 Msa0311870:CDS
ACTCATGGCTCCTTGATTAG+AGG 0.412428 2_4:-6814349 Msa0311870:exon
GAAGAGATTCCTGTTGCATC+TGG 0.418717 2_4:-6817651 Msa0311870:CDS
TTTGGTCCAACCGGGACAAT+TGG 0.420166 2_4:+6818425 None:intergenic
CGTCATAGAGTTAATATTGA+TGG 0.434073 2_4:-6814775 Msa0311870:CDS
TTTACGTTCATGATAGTTGA+AGG 0.437184 2_4:-6817993 Msa0311870:CDS
ATTGGTAGAAACATATGAAA+AGG 0.438740 2_4:-6817289 Msa0311870:CDS
ACTTGTGCACCCTGCTGTAT+TGG 0.440205 2_4:-6817307 Msa0311870:CDS
TCATTTATAATTTCCGCAGC+TGG 0.441166 2_4:-6817362 Msa0311870:CDS
TGGCAGCGAAAGCTTGATCC+TGG 0.443745 2_4:-6814450 Msa0311870:CDS
CAAAGAAACGGCAGTCTTGA+GGG 0.445001 2_4:+6814245 None:intergenic
TTTCAAATCTGTTGCCCGCC+GGG 0.446800 2_4:-6816110 Msa0311870:CDS
ATTCATGCAGATATGCATCC+TGG 0.451986 2_4:-6816256 Msa0311870:CDS
ACTTATACGGCATGTAGAAC+CGG 0.458097 2_4:+6818390 None:intergenic
ATTCTCAGATTGCGTGGAAA+AGG 0.458269 2_4:-6818253 Msa0311870:CDS
AAATCTGTTGCCCGCCGGGA+TGG 0.459158 2_4:-6816106 Msa0311870:CDS
TTGGTAGAAACATATGAAAA+GGG 0.459990 2_4:-6817288 Msa0311870:CDS
AGCAATTACTTGAGAAAGTC+AGG 0.463123 2_4:-6814798 Msa0311870:CDS
CACCATAAATATGATTGCTC+AGG 0.470184 2_4:-6818183 Msa0311870:CDS
GTCCATCAATTGTGTAAGAA+AGG 0.470237 2_4:+6814370 None:intergenic
TTGCATTCTCCCAGCGAAGT+TGG 0.471522 2_4:-6818091 Msa0311870:CDS
CAAAACATCTCAGTGTCCTA+AGG 0.474278 2_4:-6814271 Msa0311870:three_prime_UTR
TTAATGTAGCACGGTGCACT+TGG 0.476026 2_4:+6817619 None:intergenic
TGCATCTCCCCAACTTCGCT+GGG 0.476786 2_4:+6818082 None:intergenic
CATGTAATTATACCCATCTT+GGG 0.480516 2_4:+6818022 None:intergenic
TGTTCATTCCCGCTCTTAAG+TGG 0.482039 2_4:-6817473 Msa0311870:CDS
GATTGCTCAGGCAGTGAGCT+TGG 0.483437 2_4:-6818171 Msa0311870:CDS
TATGTTTCTACCAATACAGC+AGG 0.484385 2_4:+6817297 None:intergenic
TTGTATATGCGTGCCCAAGA+TGG 0.484797 2_4:-6818035 Msa0311870:CDS
AGCGGTACGGCCATCCCGGC+GGG 0.489699 2_4:+6816096 None:intergenic
TGTCCCAAGTTGACCTTGCT+AGG 0.497358 2_4:-6817407 Msa0311870:CDS
ACATTAAAATATCGTTATCC+TGG 0.498375 2_4:-6817603 Msa0311870:CDS
TTACACAATTGATGGACTCA+TGG 0.498739 2_4:-6814364 Msa0311870:CDS
AATTGCTCCATGCACTCTGC+AGG 0.499228 2_4:+6814814 None:intergenic
GCCGTGAAGGTTAGACATCC+TGG 0.500885 2_4:-6817555 Msa0311870:CDS
TTTCTAACAGGAAGTGGAAG+AGG 0.501398 2_4:-6814878 Msa0311870:intron
CTGATTGATTCTCCCACACC+AGG 0.506024 2_4:+6817537 None:intergenic
ACCACTGGTGGTTGCCGTGA+AGG 0.510120 2_4:-6817568 Msa0311870:CDS
ACAAAGAAACGGCAGTCTTG+AGG 0.512689 2_4:+6814244 None:intergenic
ACCAGGATGTCTAACCTTCA+CGG 0.516286 2_4:+6817554 None:intergenic
GACCAAATACCCACCACTGC+CGG 0.518056 2_4:-6818409 Msa0311870:CDS
TATACAATCCTTCCTGTGGT+TGG 0.519758 2_4:+6818051 None:intergenic
TCACCAATCGCACAAAACTA+AGG 0.519983 2_4:-6819553 Msa0311870:five_prime_UTR
CTGCAGCGGTACGGCCATCC+CGG 0.520825 2_4:+6816092 None:intergenic
AACGGTCCCATCACAATGGT+TGG 0.522108 2_4:+6817924 None:intergenic
GCAGTCTTGAGGGAGCCCTT+AGG 0.525030 2_4:+6814255 None:intergenic
CTCATGGCTCCTTGATTAGA+GGG 0.527193 2_4:-6814348 Msa0311870:exon
GGGTGCACAAGTGGATAGAC+AGG 0.530159 2_4:+6817318 None:intergenic
GATGAACCAAGAAAGGAATT+GGG 0.531211 2_4:-6814070 Msa0311870:three_prime_UTR
ACGTGGAAGTGAGTAGAAAT+GGG 0.531630 2_4:-6818448 Msa0311870:CDS
ATTCACTCCAACCATTGTGA+TGG 0.532321 2_4:-6817931 Msa0311870:CDS
TGTATATGCGTGCCCAAGAT+GGG 0.535161 2_4:-6818034 Msa0311870:CDS
GGTGACGACCTTGGTTCTTG+AGG 0.535537 2_4:-6814734 Msa0311870:intron
TGCAGAACGTTTCCAACCAC+AGG 0.535550 2_4:-6818063 Msa0311870:CDS
TCCGTTCATAAAATAAATAG+AGG 0.535725 2_4:-6818476 Msa0311870:CDS
AAATCTACTACTATCACCAC+TGG 0.538008 2_4:+6818211 None:intergenic
CTTAAGAGCGGGAATGAACA+TGG 0.538208 2_4:+6817476 None:intergenic
TAGAAATGGGCCAATTGTCC+CGG 0.538260 2_4:-6818435 Msa0311870:CDS
GCGCCACGATGAACCAAGAA+AGG 0.540549 2_4:-6814077 Msa0311870:three_prime_UTR
GGCATGACTGCTGAACTCTC+TGG 0.542426 2_4:-6816160 Msa0311870:CDS
AGTTCATCCTGCAGAGTGCA+TGG 0.544535 2_4:-6814821 Msa0311870:CDS
AATCTTAACCACTTAAGAGC+GGG 0.544613 2_4:+6817465 None:intergenic
ATAAATGAAGCGGTTCAAAT+GGG 0.546042 2_4:+6817377 None:intergenic
GCATGTAGAACCGGCAGTGG+TGG 0.550140 2_4:+6818399 None:intergenic
TTCACTCCAACCATTGTGAT+GGG 0.551609 2_4:-6817930 Msa0311870:CDS
TAATCCAAAGGCTTTCATTG+AGG 0.552069 2_4:-6816032 Msa0311870:intron
GCATTCTCCCAGCGAAGTTG+GGG 0.555043 2_4:-6818089 Msa0311870:CDS
CACACCATTCTCAGATTGCG+TGG 0.555938 2_4:-6818259 Msa0311870:CDS
GTGCGCATTCTGCAGCGGTA+CGG 0.556512 2_4:+6816083 None:intergenic
TACTGTCATGGTGACGACCT+TGG 0.558128 2_4:-6814743 Msa0311870:CDS
GCAATGCTTCCAGATGCAAC+AGG 0.562469 2_4:+6817642 None:intergenic
AATGGGCCAATTGTCCCGGT+TGG 0.564966 2_4:-6818431 Msa0311870:CDS
TTCCCTAGCAAGGTCAACTT+GGG 0.566297 2_4:+6817404 None:intergenic
GTGTAGCTGAAACTATGCTC+AGG 0.567262 2_4:+6817732 None:intergenic
CTGAGCAATCATATTTATGG+TGG 0.567808 2_4:+6818184 None:intergenic
TTCATGCAGATATGCATCCT+GGG 0.568436 2_4:-6816255 Msa0311870:CDS
CTTTCATAAAATGGGGTCAG+TGG 0.569229 2_4:-6817824 Msa0311870:CDS
ATGAACTATGTCACCTTCTG+GGG 0.571340 2_4:+6814837 None:intergenic
ACCTTCACGGCAACCACCAG+TGG 0.571742 2_4:+6817567 None:intergenic
AGGGAAAGCTTTAACAAATG+TGG 0.575031 2_4:-6818326 Msa0311870:CDS
GGTCCAAAATAATCTGCAAA+CGG 0.575702 2_4:+6817906 None:intergenic
CATGTAGAACCGGCAGTGGT+GGG 0.575943 2_4:+6818400 None:intergenic
TTATAATTTCCGCAGCTGGA+AGG 0.578670 2_4:-6817358 Msa0311870:CDS
GTGTGGGAGAATCAATCAGA+AGG 0.581866 2_4:-6817533 Msa0311870:CDS
AAATCATATAAGAAACCCTA+AGG 0.582382 2_4:+6819611 None:intergenic
TGGTAATGTTTGTACTGTCA+TGG 0.583589 2_4:-6814755 Msa0311870:CDS
CCCCGAACAAGAATATTCCC+AGG 0.587079 2_4:+6816238 None:intergenic
GGTGGGTATTTGGTCCAACC+GGG 0.587788 2_4:+6818417 None:intergenic
AATACAGCAGGGTGCACAAG+TGG 0.588357 2_4:+6817309 None:intergenic
GTCCCAAGTTGACCTTGCTA+GGG 0.588745 2_4:-6817406 Msa0311870:CDS
AATGGGCAGCTTCCCTAGCA+AGG 0.589522 2_4:+6817394 None:intergenic
CAGCGGTACGGCCATCCCGG+CGG 0.593776 2_4:+6816095 None:intergenic
TGAACTCTCTGGTAGTGATA+GGG 0.595798 2_4:-6816149 Msa0311870:CDS
TAATGTAGCACGGTGCACTT+GGG 0.600061 2_4:+6817620 None:intergenic
GGCAGCGAAAGCTTGATCCT+GGG 0.600800 2_4:-6814449 Msa0311870:CDS
AAGGTTAGACATCCTGGTGT+GGG 0.602666 2_4:-6817549 Msa0311870:CDS
AGCTGAGTGCATAGATCTCG+AGG 0.605437 2_4:+6817777 None:intergenic
ACGGCATGTAGAACCGGCAG+TGG 0.607529 2_4:+6818396 None:intergenic
TTTCATAAAATGGGGTCAGT+GGG 0.608104 2_4:-6817823 Msa0311870:CDS
TGAAAATTAAACAAAATACA+GGG 0.608528 2_4:+6814182 None:intergenic
AAAACATCTCAGTGTCCTAA+GGG 0.610534 2_4:-6814270 Msa0311870:three_prime_UTR
AATGTATGAAGTTCTTCTAG+AGG 0.614261 2_4:+6819581 None:intergenic
GCTTAGAGCTGATTGGGCAA+AGG 0.614729 2_4:-6814394 Msa0311870:CDS
AGCATGTTCTCTTACTCCCA+AGG 0.614917 2_4:-6819489 Msa0311870:intron
ACAGAATTGTCCTAATCCAA+AGG 0.616547 2_4:-6816044 Msa0311870:CDS
GGGGTCAGTGGGCCGCTACG+CGG 0.616757 2_4:-6817812 Msa0311870:CDS
AAGAAACATCCTTCCAGCTG+CGG 0.618231 2_4:+6817349 None:intergenic
ATTCCTTTCTTGGTTCATCG+TGG 0.619033 2_4:+6814074 None:intergenic
GTCTGCATCACATCGTACCC+AGG 0.619350 2_4:+6814432 None:intergenic
TGCGGAAATTATAAATGAAG+CGG 0.620081 2_4:+6817367 None:intergenic
TACAGAAAGTACTGTTCCAG+TGG 0.620946 2_4:-6818227 Msa0311870:CDS
CGCATATACAATCCTTCCTG+TGG 0.621310 2_4:+6818047 None:intergenic
GAAGGTTAGACATCCTGGTG+TGG 0.621587 2_4:-6817550 Msa0311870:CDS
CAAGTGGATAGACAGGCTTA+GGG 0.625206 2_4:+6817325 None:intergenic
ATGGCTCCTTGATTAGAGGG+AGG 0.627887 2_4:-6814345 Msa0311870:exon
TGGTAAACAAGCAAAACCAC+TGG 0.628724 2_4:-6817583 Msa0311870:CDS
AATAATTACCTCAAGAACCA+AGG 0.630120 2_4:+6814726 None:intergenic
TGAGCAATCATATTTATGGT+GGG 0.639230 2_4:+6818185 None:intergenic
GAACGTTTCCAACCACAGGA+AGG 0.642315 2_4:-6818059 Msa0311870:CDS
CCTGGGAATATTCTTGTTCG+GGG 0.646006 2_4:-6816238 Msa0311870:CDS
GTATGAAGTTCTTCTAGAGG+CGG 0.648018 2_4:+6819584 None:intergenic
AATAAATAGAGGCAGATACG+TGG 0.651014 2_4:-6818465 Msa0311870:CDS
TGCAAACGGTCCCATCACAA+TGG 0.656016 2_4:+6817920 None:intergenic
TAATCTTAACCACTTAAGAG+CGG 0.658895 2_4:+6817464 None:intergenic
ACTGAGTGCGCATTCTGCAG+CGG 0.662239 2_4:+6816078 None:intergenic
GGTCCTGCTTTCATAAAATG+GGG 0.673913 2_4:-6817831 Msa0311870:CDS
GAAAATTAAACAAAATACAG+GGG 0.674782 2_4:+6814183 None:intergenic
TTTCTCAAGAGCCTTAACAA+CGG 0.679204 2_4:+6814315 None:intergenic
ACGTCTAAGAAAATTACATG+AGG 0.681342 2_4:+6816184 None:intergenic
TGTGGGAGAATCAATCAGAA+GGG 0.688516 2_4:-6817532 Msa0311870:CDS
TAAACAAGCAAAACCACTGG+TGG 0.694708 2_4:-6817580 Msa0311870:CDS
ATGTTTCTACCAATACAGCA+GGG 0.721417 2_4:+6817298 None:intergenic
CTAGTGTTCGATGAACAACG+CGG 0.805665 2_4:+6817862 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAAGTTACAAATATT+AGG + chr2_4:6819145-6819164 None:intergenic 10.0%
!! AAAAAAAAAAAACAAAGAAA+CGG + chr2_4:6819394-6819413 None:intergenic 10.0%
!!! TTTGTAATAGATATTTGTTA+TGG - chr2_4:6814240-6814259 Msa0311870:three_prime_UTR 15.0%
!! TTCAAAATTGTCAAAAATTT+CGG + chr2_4:6815956-6815975 None:intergenic 15.0%
!! AATAAAAAAAAAAATCCCAT+TGG + chr2_4:6817166-6817185 None:intergenic 15.0%
!!! GATTTTTTTTTTTATTCAAG+CGG - chr2_4:6817170-6817189 Msa0311870:intron 15.0%
!!! AAAAAATGTTTTAGATTTAG+AGG + chr2_4:6817239-6817258 None:intergenic 15.0%
!!! TAAAACATTTTTTGTATCTA+CGG - chr2_4:6817246-6817265 Msa0311870:CDS 15.0%
!! TTTAATACATATACAAACAA+AGG - chr2_4:6818122-6818141 Msa0311870:CDS 15.0%
!! AATTCTTCACATATAAATAT+AGG + chr2_4:6818462-6818481 None:intergenic 15.0%
!! AATCATTTAAATCTACAATT+AGG + chr2_4:6818505-6818524 None:intergenic 15.0%
!! GAATATAAAATAAGAAATGA+TGG + chr2_4:6818560-6818579 None:intergenic 15.0%
!!! TTTGTAACTTTATAATTTGT+AGG - chr2_4:6819149-6819168 Msa0311870:intron 15.0%
!!! TTGTAACTTTATAATTTGTA+GGG - chr2_4:6819150-6819169 Msa0311870:intron 15.0%
!! TGAAAATTAAACAAAATACA+GGG + chr2_4:6819445-6819464 None:intergenic 15.0%
!! TTGAAAATTAAACAAAATAC+AGG + chr2_4:6819446-6819465 None:intergenic 15.0%
!! TAAAAATGCTATATTATTGT+TGG - chr2_4:6819587-6819606 Msa0311870:five_prime_UTR 15.0%
!!! TCTATTTTCATTTGCATTTT+TGG - chr2_4:6814181-6814200 Msa0311870:three_prime_UTR 20.0%
!!! CTATTTTCATTTGCATTTTT+GGG - chr2_4:6814182-6814201 Msa0311870:three_prime_UTR 20.0%
!!! TATTTTCATTTGCATTTTTG+GGG - chr2_4:6814183-6814202 Msa0311870:three_prime_UTR 20.0%
!! ATATTCGTTTATTTGATCAT+AGG - chr2_4:6814272-6814291 Msa0311870:three_prime_UTR 20.0%
!!! AAAATCTAGACTTTTCTTTA+TGG - chr2_4:6814301-6814320 Msa0311870:three_prime_UTR 20.0%
!!! AAATCTAGACTTTTCTTTAT+GGG - chr2_4:6814302-6814321 Msa0311870:three_prime_UTR 20.0%
!!! TATATGCTTTTTCAATTCTA+TGG - chr2_4:6814397-6814416 Msa0311870:CDS 20.0%
!!! TTTTTGGTGAATTAAAGTTT+AGG - chr2_4:6814629-6814648 Msa0311870:intron 20.0%
!! TGGGTTATTAGATAAAATTA+AGG - chr2_4:6814810-6814829 Msa0311870:CDS 20.0%
!! TAAAATTAGATTTGCATCAA+GGG + chr2_4:6814999-6815018 None:intergenic 20.0%
!! ATAAAATTAGATTTGCATCA+AGG + chr2_4:6815000-6815019 None:intergenic 20.0%
!!! ATCTAATTTTATGCTTTTTG+TGG - chr2_4:6815008-6815027 Msa0311870:intron 20.0%
!!! AATGTTTTGATAACATAATC+CGG + chr2_4:6815061-6815080 None:intergenic 20.0%
!!! ATTATTTTGGACCAAATTTT+AGG - chr2_4:6815728-6815747 Msa0311870:intron 20.0%
!! TCAAAATTGTCAAAAATTTC+GGG + chr2_4:6815955-6815974 None:intergenic 20.0%
!!! ATAAAAACGAAGTGTTATAA+AGG - chr2_4:6816551-6816570 Msa0311870:intron 20.0%
!! TCAAAAAAAATTACATTGTG+AGG + chr2_4:6816581-6816600 None:intergenic 20.0%
!! ATTAGATAAACAAGTTATCT+TGG + chr2_4:6816803-6816822 None:intergenic 20.0%
!!! ATATTTAGCTTTCCTTTTTA+AGG - chr2_4:6817092-6817111 Msa0311870:intron 20.0%
!!! TATTTAGCTTTCCTTTTTAA+GGG - chr2_4:6817093-6817112 Msa0311870:intron 20.0%
!! TTAAAATTACTGCTTACAAA+GGG + chr2_4:6817280-6817299 None:intergenic 20.0%
!!! TTTAAAATTACTGCTTACAA+AGG + chr2_4:6817281-6817300 None:intergenic 20.0%
!! AAAAAATCGATAATCTAAGT+TGG + chr2_4:6817631-6817650 None:intergenic 20.0%
!!! TTTTTTTCCTTTTTGTGAAA+GGG - chr2_4:6817880-6817899 Msa0311870:CDS 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr2_4:6818079-6818098 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + chr2_4:6818080-6818099 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG + chr2_4:6818081-6818100 None:intergenic 20.0%
!! TTTAAATGATTTATTGTGCA+TGG - chr2_4:6818514-6818533 Msa0311870:exon 20.0%
!! GAAAATTAAACAAAATACAG+GGG + chr2_4:6819444-6819463 None:intergenic 20.0%
!!! CAATAATATAGCATTTTTAC+AGG + chr2_4:6819586-6819605 None:intergenic 20.0%
! AAATCATATAAGAAACCCTA+AGG + chr2_4:6814016-6814035 None:intergenic 25.0%
! ATGCAAATGAAAATAGAGAA+GGG + chr2_4:6814178-6814197 None:intergenic 25.0%
! AATGCAAATGAAAATAGAGA+AGG + chr2_4:6814179-6814198 None:intergenic 25.0%
!!! ATTTTCATTTGCATTTTTGG+GGG - chr2_4:6814184-6814203 Msa0311870:three_prime_UTR 25.0%
!! AATCTAGACTTTTCTTTATG+GGG - chr2_4:6814303-6814322 Msa0311870:three_prime_UTR 25.0%
!! ATTGGTTATCTTTTCTACAT+TGG - chr2_4:6814444-6814463 Msa0311870:CDS 25.0%
!!! GGGCATTTATTGATTTTTTT+TGG - chr2_4:6814613-6814632 Msa0311870:intron 25.0%
! AATTAAAGTTTAGGTGAGTT+GGG - chr2_4:6814638-6814657 Msa0311870:intron 25.0%
!!! AGTTATTTCTACAATCAAAG+AGG - chr2_4:6814857-6814876 Msa0311870:CDS 25.0%
!!! ATTTATTTTATGAACGGACT+GGG + chr2_4:6815146-6815165 None:intergenic 25.0%
!!! TATTTATTTTATGAACGGAC+TGG + chr2_4:6815147-6815166 None:intergenic 25.0%
! TCCGTTCATAAAATAAATAG+AGG - chr2_4:6815148-6815167 Msa0311870:intron 25.0%
!!! GCCTCTATTTATTTTATGAA+CGG + chr2_4:6815152-6815171 None:intergenic 25.0%
! GCTTCATTATGAAACTTATA+CGG + chr2_4:6815250-6815269 None:intergenic 25.0%
!!! AACGATATTTTAATGTAGCA+CGG + chr2_4:6816017-6816036 None:intergenic 25.0%
! ACATTAAAATATCGTTATCC+TGG - chr2_4:6816021-6816040 Msa0311870:intron 25.0%
!!! GGATTTTGCTATTATCAATA+CGG - chr2_4:6816113-6816132 Msa0311870:CDS 25.0%
! ATTGGTAGAAACATATGAAA+AGG - chr2_4:6816335-6816354 Msa0311870:intron 25.0%
! TTGGTAGAAACATATGAAAA+GGG - chr2_4:6816336-6816355 Msa0311870:intron 25.0%
!! ACATTGCTATCATATAGTTT+TGG - chr2_4:6816490-6816509 Msa0311870:intron 25.0%
!!! GGATTGATGAATGAATTTTT+TGG - chr2_4:6816725-6816744 Msa0311870:intron 25.0%
! CTATATCTTGACAAAGAAAA+CGG + chr2_4:6816885-6816904 None:intergenic 25.0%
! GTAACAAATAACAGATATCT+GGG + chr2_4:6817201-6817220 None:intergenic 25.0%
! TGTAACAAATAACAGATATC+TGG + chr2_4:6817202-6817221 None:intergenic 25.0%
! TAGTGATAGGGTAAATTTAT+TGG - chr2_4:6817487-6817506 Msa0311870:CDS 25.0%
!!! TTATCGATTTTTTTTCCTGT+AGG - chr2_4:6817638-6817657 Msa0311870:CDS 25.0%
!! ATAATTAGGGTATTCTAACT+GGG - chr2_4:6817834-6817853 Msa0311870:CDS 25.0%
! CTTTCACAAAAAGGAAAAAA+AGG + chr2_4:6817881-6817900 None:intergenic 25.0%
!!! CTTTTTTTCCTTTTTGTGAA+AGG - chr2_4:6817879-6817898 Msa0311870:CDS 25.0%
! AAAAACTAAAGTTTAACTGC+AGG + chr2_4:6817920-6817939 None:intergenic 25.0%
! GAGTATATAAAAAGAGATTG+TGG + chr2_4:6817952-6817971 None:intergenic 25.0%
! AAATGAGTGGTTAGATATTA+GGG + chr2_4:6817982-6818001 None:intergenic 25.0%
! CAAAAATAAAGTCAAATGAG+TGG + chr2_4:6817995-6818014 None:intergenic 25.0%
! TTGAAAAGGGTTTAGATTTA+GGG + chr2_4:6818019-6818038 None:intergenic 25.0%
! TTTGAAAAGGGTTTAGATTT+AGG + chr2_4:6818020-6818039 None:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + chr2_4:6818032-6818051 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr2_4:6818033-6818052 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr2_4:6818069-6818088 None:intergenic 25.0%
! TATACAAACAAAGGACAATA+TGG - chr2_4:6818131-6818150 Msa0311870:CDS 25.0%
! AAGAAATGTGAAAAAAGCAA+AGG - chr2_4:6818204-6818223 Msa0311870:CDS 25.0%
! AGAAATGTGAAAAAAGCAAA+GGG - chr2_4:6818205-6818224 Msa0311870:CDS 25.0%
!!! TGCGTTAAAATTTGTTAGTT+TGG - chr2_4:6818311-6818330 Msa0311870:CDS 25.0%
! TTTAAATCTGCGTCAAATAT+AGG + chr2_4:6818361-6818380 None:intergenic 25.0%
! ATGTGAAGAATTACTGTAAT+AGG - chr2_4:6818470-6818489 Msa0311870:CDS 25.0%
! GTTATTCAATCAAGTAATGT+TGG - chr2_4:6818609-6818628 Msa0311870:intron 25.0%
!! ATTTGACATTATTTGCTGAA+GGG + chr2_4:6818638-6818657 None:intergenic 25.0%
!! TATTTGACATTATTTGCTGA+AGG + chr2_4:6818639-6818658 None:intergenic 25.0%
! CAAATATTAGGTAAGTACAA+TGG + chr2_4:6819133-6819152 None:intergenic 25.0%
!! AACTTTATAATTTGTAGGGT+TGG - chr2_4:6819154-6819173 Msa0311870:intron 25.0%
AATGTATGAAGTTCTTCTAG+AGG + chr2_4:6814046-6814065 None:intergenic 30.0%
! TGCTAGTTTGATGAAGAATT+TGG + chr2_4:6814119-6814138 None:intergenic 30.0%
AATGAAAATAGAGAAGGGAA+AGG + chr2_4:6814173-6814192 None:intergenic 30.0%
!!! GGGTTGAGTTTTAGTTTAAT+GGG - chr2_4:6814323-6814342 Msa0311870:three_prime_UTR 30.0%
! TTATCTTTTCTACATTGGAG+AGG - chr2_4:6814449-6814468 Msa0311870:CDS 30.0%
CTCATTAAGTTCCCAAAAAT+GGG - chr2_4:6814554-6814573 Msa0311870:intron 30.0%
ACTATTTGTTCCTCATTTCT+TGG + chr2_4:6814591-6814610 None:intergenic 30.0%
AGAAATGAGGAACAAATAGT+TGG - chr2_4:6814591-6814610 Msa0311870:intron 30.0%
GAAATGAGGAACAAATAGTT+GGG - chr2_4:6814592-6814611 Msa0311870:intron 30.0%
AAATGAGGAACAAATAGTTG+GGG - chr2_4:6814593-6814612 Msa0311870:intron 30.0%
GAATTAAAGTTTAGGTGAGT+TGG - chr2_4:6814637-6814656 Msa0311870:intron 30.0%
TAAATGTCCAATCTTCCAAA+AGG + chr2_4:6814757-6814776 None:intergenic 30.0%
AGTGTACTCATCTACTATTT+AGG - chr2_4:6814780-6814799 Msa0311870:CDS 30.0%
CTACAATCAAAGAGGAAATA+TGG - chr2_4:6814865-6814884 Msa0311870:CDS 30.0%
AGTTGTCTTTATGTTGTCTT+GGG - chr2_4:6814913-6814932 Msa0311870:intron 30.0%
!! TTTTATGCTTTTTGTGGTTC+TGG - chr2_4:6815014-6815033 Msa0311870:intron 30.0%
TAAGTGATTGGAAATATAGC+CGG - chr2_4:6815039-6815058 Msa0311870:intron 30.0%
TGAGCAATCATATTTATGGT+GGG + chr2_4:6815442-6815461 None:intergenic 30.0%
CATGTAAATGCAAAAATACC+AGG + chr2_4:6815505-6815524 None:intergenic 30.0%
!! GGTATTTTTGCATTTACATG+TGG - chr2_4:6815505-6815524 Msa0311870:intron 30.0%
CATGTAATTATACCCATCTT+GGG + chr2_4:6815605-6815624 None:intergenic 30.0%
ACATGTAATTATACCCATCT+TGG + chr2_4:6815606-6815625 None:intergenic 30.0%
TTTACGTTCATGATAGTTGA+AGG - chr2_4:6815631-6815650 Msa0311870:intron 30.0%
!! GACCAAATTTTAGGAAACTA+TGG - chr2_4:6815737-6815756 Msa0311870:intron 30.0%
AGCCATAGTTTCCTAAAATT+TGG + chr2_4:6815742-6815761 None:intergenic 30.0%
!!! TCGGTTAAATGCTTTTTCAA+TGG + chr2_4:6815926-6815945 None:intergenic 30.0%
! CAAAAATTTCGGGAAGTTTT+CGG + chr2_4:6815945-6815964 None:intergenic 30.0%
TAATCTTAACCACTTAAGAG+CGG + chr2_4:6816163-6816182 None:intergenic 30.0%
ATAAATGAAGCGGTTCAAAT+GGG + chr2_4:6816250-6816269 None:intergenic 30.0%
TATAAATGAAGCGGTTCAAA+TGG + chr2_4:6816251-6816270 None:intergenic 30.0%
TGCGGAAATTATAAATGAAG+CGG + chr2_4:6816260-6816279 None:intergenic 30.0%
ACAAATCAACAATGTCCAAA+AGG + chr2_4:6816523-6816542 None:intergenic 30.0%
AGAGAAATTGTTAGTCCATT+TGG - chr2_4:6816663-6816682 Msa0311870:intron 30.0%
TCTAATAAGCAAGTGTGAAT+CGG - chr2_4:6816817-6816836 Msa0311870:intron 30.0%
!!! ATCCTTTTTAAAACAGACTC+TGG - chr2_4:6816915-6816934 Msa0311870:intron 30.0%
GATCATTATTACAAAGACCT+TGG - chr2_4:6817024-6817043 Msa0311870:intron 30.0%
CAGTAAAATTACTCATACCA+AGG + chr2_4:6817044-6817063 None:intergenic 30.0%
ACGTCTAAGAAAATTACATG+AGG + chr2_4:6817443-6817462 None:intergenic 30.0%
! CATGTAATTTTCTTAGACGT+AGG - chr2_4:6817443-6817462 Msa0311870:CDS 30.0%
AGAATGTAATTCAGTGATTG+TGG - chr2_4:6817682-6817701 Msa0311870:CDS 30.0%
AGTCAACAACTAGCATAATT+AGG - chr2_4:6817820-6817839 Msa0311870:CDS 30.0%
GTCAACAACTAGCATAATTA+GGG - chr2_4:6817821-6817840 Msa0311870:CDS 30.0%
! CATAATTAGGGTATTCTAAC+TGG - chr2_4:6817833-6817852 Msa0311870:CDS 30.0%
ACAAAAAGGAAAAAAAGGAG+AGG + chr2_4:6817876-6817895 None:intergenic 30.0%
AGTAAATCCCTTTCACAAAA+AGG + chr2_4:6817890-6817909 None:intergenic 30.0%
ATAAAAAGAGATTGTGGTAC+TGG + chr2_4:6817946-6817965 None:intergenic 30.0%
CAAATGAGTGGTTAGATATT+AGG + chr2_4:6817983-6818002 None:intergenic 30.0%
!! AATTTGTTAGTTTGGTACCT+TGG - chr2_4:6818319-6818338 Msa0311870:CDS 30.0%
!!! TTTCCTCTTTGTTTTCTAAC+AGG - chr2_4:6818734-6818753 Msa0311870:intron 30.0%
CGTCATAGAGTTAATATTGA+TGG - chr2_4:6818849-6818868 Msa0311870:intron 30.0%
AATAATTACCTCAAGAACCA+AGG + chr2_4:6818901-6818920 None:intergenic 30.0%
TCACATGATATTAAGGAACA+TGG + chr2_4:6818937-6818956 None:intergenic 30.0%
AAGTTCCAATTCTTCTATGT+TGG + chr2_4:6819079-6819098 None:intergenic 30.0%
TACAATGGAACGTTAATCAT+CGG + chr2_4:6819118-6819137 None:intergenic 30.0%
CAGTTTACGAGAAAAATAGA+AGG - chr2_4:6819489-6819508 Msa0311870:intron 30.0%
!!! GGGGTTGAGTTTTAGTTTAA+TGG - chr2_4:6814322-6814341 Msa0311870:three_prime_UTR 35.0%
TTTGCGTCTGATGTTTGAAT+TGG - chr2_4:6814426-6814445 Msa0311870:CDS 35.0%
GGTTAGATATTTCAGCTGTA+AGG + chr2_4:6814535-6814554 None:intergenic 35.0%
!! CCATTTTTGGGAACTTAATG+AGG + chr2_4:6814556-6814575 None:intergenic 35.0%
CCTCATTAAGTTCCCAAAAA+TGG - chr2_4:6814553-6814572 Msa0311870:intron 35.0%
TTCAAATGCCCTAATTCTTC+CGG + chr2_4:6814712-6814731 None:intergenic 35.0%
TCTACTATTTAGGCTGTGTT+TGG - chr2_4:6814790-6814809 Msa0311870:CDS 35.0%
CTACTATTTAGGCTGTGTTT+GGG - chr2_4:6814791-6814810 Msa0311870:CDS 35.0%
CAGTTGTCTTTATGTTGTCT+TGG - chr2_4:6814912-6814931 Msa0311870:intron 35.0%
GTTGTCTTTATGTTGTCTTG+GGG - chr2_4:6814914-6814933 Msa0311870:intron 35.0%
TAAGCTGGAACAACATATGT+AGG - chr2_4:6814949-6814968 Msa0311870:intron 35.0%
AATAAATAGAGGCAGATACG+TGG - chr2_4:6815159-6815178 Msa0311870:intron 35.0%
! TGAAGCACGTAGTTCATTTT+TGG - chr2_4:6815264-6815283 Msa0311870:intron 35.0%
!! GAAGCACGTAGTTCATTTTT+GGG - chr2_4:6815265-6815284 Msa0311870:intron 35.0%
!! AAGCACGTAGTTCATTTTTG+GGG - chr2_4:6815266-6815285 Msa0311870:intron 35.0%
! AGGGAAAGCTTTAACAAATG+TGG - chr2_4:6815298-6815317 Msa0311870:intron 35.0%
AAATCTACTACTATCACCAC+TGG + chr2_4:6815416-6815435 None:intergenic 35.0%
CTGAGCAATCATATTTATGG+TGG + chr2_4:6815443-6815462 None:intergenic 35.0%
CACCATAAATATGATTGCTC+AGG - chr2_4:6815441-6815460 Msa0311870:intron 35.0%
TGCCTGAGCAATCATATTTA+TGG + chr2_4:6815446-6815465 None:intergenic 35.0%
!! AAGGTTTTGTCTTATTAGCG+AGG - chr2_4:6815650-6815669 Msa0311870:intron 35.0%
!! AGGTTTTGTCTTATTAGCGA+GGG - chr2_4:6815651-6815670 Msa0311870:intron 35.0%
GGTCCAAAATAATCTGCAAA+CGG + chr2_4:6815721-6815740 None:intergenic 35.0%
AGGTCCTGCTTTCATAAAAT+GGG - chr2_4:6815792-6815811 Msa0311870:intron 35.0%
TTTCATAAAATGGGGTCAGT+GGG - chr2_4:6815801-6815820 Msa0311870:intron 35.0%
AATCTTAACCACTTAAGAGC+GGG + chr2_4:6816162-6816181 None:intergenic 35.0%
TCATTTATAATTTCCGCAGC+TGG - chr2_4:6816262-6816281 Msa0311870:CDS 35.0%
! ATGTTTCTACCAATACAGCA+GGG + chr2_4:6816329-6816348 None:intergenic 35.0%
! TATGTTTCTACCAATACAGC+AGG + chr2_4:6816330-6816349 None:intergenic 35.0%
!!! CGTTATGTTGATGGTTTTCA+AGG - chr2_4:6816372-6816391 Msa0311870:intron 35.0%
AAATCTGCTCTTGCTCATAT+TGG - chr2_4:6816408-6816427 Msa0311870:intron 35.0%
AATCTGCTCTTGCTCATATT+GGG - chr2_4:6816409-6816428 Msa0311870:intron 35.0%
!!! AGTTTTGGATAGAGTCCTTT+TGG - chr2_4:6816505-6816524 Msa0311870:intron 35.0%
!!! GCACTTGTCATTTTTCCAAA+TGG + chr2_4:6816681-6816700 None:intergenic 35.0%
CTGAGATTGTTTAAGTAGCA+TGG - chr2_4:6816704-6816723 Msa0311870:intron 35.0%
ACACATAGATATGCATGATC+AGG - chr2_4:6816761-6816780 Msa0311870:intron 35.0%
!!! AGCCAGAGTCTGTTTTAAAA+AGG + chr2_4:6816920-6816939 None:intergenic 35.0%
TTGTGTGCAACTGAAACTAT+AGG - chr2_4:6816969-6816988 Msa0311870:intron 35.0%
TGTGTGCAACTGAAACTATA+GGG - chr2_4:6816970-6816989 Msa0311870:intron 35.0%
!! AGCTTTCCTTTTTAAGGGTA+TGG - chr2_4:6817098-6817117 Msa0311870:intron 35.0%
!! ATTTAAGTTGCAACTGCCAA+TGG - chr2_4:6817147-6817166 Msa0311870:intron 35.0%
!! TTTAAGTTGCAACTGCCAAT+GGG - chr2_4:6817148-6817167 Msa0311870:intron 35.0%
! ACCATGCAATGTTTTCTTTC+AGG - chr2_4:6817334-6817353 Msa0311870:CDS 35.0%
ACCTGAAAGAAAACATTGCA+TGG + chr2_4:6817338-6817357 None:intergenic 35.0%
! ATGCAATGTTTTCTTTCAGG+TGG - chr2_4:6817337-6817356 Msa0311870:CDS 35.0%
ATCCTGGGAATATTCTTGTT+CGG - chr2_4:6817384-6817403 Msa0311870:CDS 35.0%
ACAGAATTGTCCTAATCCAA+AGG - chr2_4:6817580-6817599 Msa0311870:CDS 35.0%
TCAATGAAAGCCTTTGGATT+AGG + chr2_4:6817593-6817612 None:intergenic 35.0%
TAATCCAAAGGCTTTCATTG+AGG - chr2_4:6817592-6817611 Msa0311870:CDS 35.0%
ATTACCTCAATGAAAGCCTT+TGG + chr2_4:6817599-6817618 None:intergenic 35.0%
GGAAAAAAAGGAGAGGAATT+TGG + chr2_4:6817869-6817888 None:intergenic 35.0%
AATGTGAAAAAAGCAAAGGG+AGG - chr2_4:6818208-6818227 Msa0311870:CDS 35.0%
TGCACATTTATCTGCGTTTA+AGG + chr2_4:6818398-6818417 None:intergenic 35.0%
!!! CTGTCTCACATAGTTTTGTT+TGG - chr2_4:6818425-6818444 Msa0311870:CDS 35.0%
!!! TCTCACATAGTTTTGTTTGG+TGG - chr2_4:6818428-6818447 Msa0311870:CDS 35.0%
!!! CTCACATAGTTTTGTTTGGT+GGG - chr2_4:6818429-6818448 Msa0311870:CDS 35.0%
CTTCCTGTTAGAAAACAAAG+AGG + chr2_4:6818740-6818759 None:intergenic 35.0%
!!! CTTTGTTTTCTAACAGGAAG+TGG - chr2_4:6818740-6818759 Msa0311870:intron 35.0%
!!! TGGAAGAGGCATTTACTTTT+TGG - chr2_4:6818760-6818779 Msa0311870:intron 35.0%
!!! GGAAGAGGCATTTACTTTTT+GGG - chr2_4:6818761-6818780 Msa0311870:intron 35.0%
!!! GAAGAGGCATTTACTTTTTG+GGG - chr2_4:6818762-6818781 Msa0311870:intron 35.0%
AGCAATTACTTGAGAAAGTC+AGG - chr2_4:6818826-6818845 Msa0311870:intron 35.0%
! TGGTAATGTTTGTACTGTCA+TGG - chr2_4:6818869-6818888 Msa0311870:intron 35.0%
TTGTGCCAACATAGAAGAAT+TGG - chr2_4:6819071-6819090 Msa0311870:intron 35.0%
ACAATGGAACGTTAATCATC+GGG + chr2_4:6819117-6819136 None:intergenic 35.0%
GACCTTTCTTACACAATTGA+TGG - chr2_4:6819252-6819271 Msa0311870:intron 35.0%
GTCCATCAATTGTGTAAGAA+AGG + chr2_4:6819257-6819276 None:intergenic 35.0%
!! TTACACAATTGATGGACTCA+TGG - chr2_4:6819260-6819279 Msa0311870:intron 35.0%
AAAAAACCTCCCTCTAATCA+AGG + chr2_4:6819288-6819307 None:intergenic 35.0%
!!! GAGGTTTTTTTCCGTTGTTA+AGG - chr2_4:6819298-6819317 Msa0311870:intron 35.0%
TTTCTCAAGAGCCTTAACAA+CGG + chr2_4:6819312-6819331 None:intergenic 35.0%
! TTAGGACACTGAGATGTTTT+GGG + chr2_4:6819354-6819373 None:intergenic 35.0%
AAAACATCTCAGTGTCCTAA+GGG - chr2_4:6819354-6819373 Msa0311870:intron 35.0%
GATGAACCAAGAAAGGAATT+GGG - chr2_4:6819554-6819573 Msa0311870:five_prime_UTR 35.0%
CAAATTCCCAATTCCTTTCT+TGG + chr2_4:6819563-6819582 None:intergenic 35.0%
! GTATGAAGTTCTTCTAGAGG+CGG + chr2_4:6814043-6814062 None:intergenic 40.0%
TCACCAATCGCACAAAACTA+AGG - chr2_4:6814071-6814090 Msa0311870:three_prime_UTR 40.0%
AAGGAGAGAGATTTCACCTT+GGG + chr2_4:6814154-6814173 None:intergenic 40.0%
AAAGGAGAGAGATTTCACCT+TGG + chr2_4:6814155-6814174 None:intergenic 40.0%
! TTCAACTTCTTGTCGCCTTT+TGG - chr2_4:6814739-6814758 Msa0311870:CDS 40.0%
!! GTGGTTCTGGTTTAAGTGAT+TGG - chr2_4:6815027-6815046 Msa0311870:intron 40.0%
TACGTGGAAGTGAGTAGAAA+TGG - chr2_4:6815175-6815194 Msa0311870:intron 40.0%
ACGTGGAAGTGAGTAGAAAT+GGG - chr2_4:6815176-6815195 Msa0311870:intron 40.0%
ACTTATACGGCATGTAGAAC+CGG + chr2_4:6815237-6815256 None:intergenic 40.0%
!!! ATTTTTGGGGCTTGCAACAA+GGG - chr2_4:6815279-6815298 Msa0311870:intron 40.0%
! TTTTCCACGCAATCTGAGAA+TGG + chr2_4:6815372-6815391 None:intergenic 40.0%
ATTCTCAGATTGCGTGGAAA+AGG - chr2_4:6815371-6815390 Msa0311870:intron 40.0%
!! TACAGAAAGTACTGTTCCAG+TGG - chr2_4:6815397-6815416 Msa0311870:intron 40.0%
! TTTGACTCGCTCTTATTTGC+TGG - chr2_4:6815477-6815496 Msa0311870:intron 40.0%
TATACAATCCTTCCTGTGGT+TGG + chr2_4:6815576-6815595 None:intergenic 40.0%
ATTCACTCCAACCATTGTGA+TGG - chr2_4:6815693-6815712 Msa0311870:intron 40.0%
TTCACTCCAACCATTGTGAT+GGG - chr2_4:6815694-6815713 Msa0311870:intron 40.0%
! GGACCGTTTGCAGATTATTT+TGG - chr2_4:6815715-6815734 Msa0311870:intron 40.0%
CATCGAACACTAGAAAAAGC+AGG - chr2_4:6815772-6815791 Msa0311870:intron 40.0%
CAGGTCCTGCTTTCATAAAA+TGG - chr2_4:6815791-6815810 Msa0311870:intron 40.0%
GGTCCTGCTTTCATAAAATG+GGG - chr2_4:6815793-6815812 Msa0311870:intron 40.0%
! TGACCCCATTTTATGAAAGC+AGG + chr2_4:6815799-6815818 None:intergenic 40.0%
CTTTCATAAAATGGGGTCAG+TGG - chr2_4:6815800-6815819 Msa0311870:intron 40.0%
AGATCTCGAGGAAAAAGATC+AGG + chr2_4:6815838-6815857 None:intergenic 40.0%
!! AGTGGTTTTGCTTGTTTACC+AGG + chr2_4:6816042-6816061 None:intergenic 40.0%
TGGTAAACAAGCAAAACCAC+TGG - chr2_4:6816041-6816060 Msa0311870:CDS 40.0%
TAAACAAGCAAAACCACTGG+TGG - chr2_4:6816044-6816063 Msa0311870:CDS 40.0%
TGTGGGAGAATCAATCAGAA+GGG - chr2_4:6816092-6816111 Msa0311870:CDS 40.0%
TTATAATTTCCGCAGCTGGA+AGG - chr2_4:6816266-6816285 Msa0311870:CDS 40.0%
AGTGTCTCACGTTATGTTGA+TGG - chr2_4:6816363-6816382 Msa0311870:intron 40.0%
!! TGCACTTTTGAAGATGCTTC+TGG - chr2_4:6816437-6816456 Msa0311870:intron 40.0%
CTGAAACTATAGGGTGGTAT+AGG - chr2_4:6816979-6816998 Msa0311870:intron 40.0%
CTGGATCCATACCCTTAAAA+AGG + chr2_4:6817107-6817126 None:intergenic 40.0%
ATTCATGCAGATATGCATCC+TGG - chr2_4:6817368-6817387 Msa0311870:CDS 40.0%
TTCATGCAGATATGCATCCT+GGG - chr2_4:6817369-6817388 Msa0311870:CDS 40.0%
TCCTGGGAATATTCTTGTTC+GGG - chr2_4:6817385-6817404 Msa0311870:CDS 40.0%
! TGAACTCTCTGGTAGTGATA+GGG - chr2_4:6817475-6817494 Msa0311870:CDS 40.0%
ACGTCAAACAGAGGAACAAA+GGG + chr2_4:6817732-6817751 None:intergenic 40.0%
ACGACATAACATGTGAACAG+AGG + chr2_4:6817759-6817778 None:intergenic 40.0%
CTTGAGAGGAACACACAAAA+AGG + chr2_4:6817802-6817821 None:intergenic 40.0%
!! ATGCTAGTTGTTGACTTGAG+AGG + chr2_4:6817816-6817835 None:intergenic 40.0%
GAGTGGTTAGATATTAGGGA+CGG + chr2_4:6817978-6817997 None:intergenic 40.0%
AGCAAAGGGAGGTTACATTA+AGG - chr2_4:6818219-6818238 Msa0311870:CDS 40.0%
GCAAAGGGAGGTTACATTAA+GGG - chr2_4:6818220-6818239 Msa0311870:CDS 40.0%
! TTGTTAGTTTGGTACCTTGG+AGG - chr2_4:6818322-6818341 Msa0311870:CDS 40.0%
TGATTTATTGTGCATGGCTG+TGG - chr2_4:6818520-6818539 Msa0311870:intron 40.0%
ATCGTGCAAGATCATAGTCA+AGG + chr2_4:6818703-6818722 None:intergenic 40.0%
TTTCTAACAGGAAGTGGAAG+AGG - chr2_4:6818746-6818765 Msa0311870:intron 40.0%
ATGAACTATGTCACCTTCTG+GGG + chr2_4:6818790-6818809 None:intergenic 40.0%
GATGAACTATGTCACCTTCT+GGG + chr2_4:6818791-6818810 None:intergenic 40.0%
GGTGTGGTCACATGATATTA+AGG + chr2_4:6818944-6818963 None:intergenic 40.0%
ATACTTGTAACTGGTAGGTG+TGG + chr2_4:6818960-6818979 None:intergenic 40.0%
CACCTACCAGTTACAAGTAT+TGG - chr2_4:6818960-6818979 Msa0311870:intron 40.0%
AGCCAATACTTGTAACTGGT+AGG + chr2_4:6818965-6818984 None:intergenic 40.0%
AGTCAGCCAATACTTGTAAC+TGG + chr2_4:6818969-6818988 None:intergenic 40.0%
!! AGTATTGGCTGACTGAAAAC+TGG - chr2_4:6818975-6818994 Msa0311870:intron 40.0%
!! GTATTGGCTGACTGAAAACT+GGG - chr2_4:6818976-6818995 Msa0311870:intron 40.0%
! TATTGGCTGACTGAAAACTG+GGG - chr2_4:6818977-6818996 Msa0311870:intron 40.0%
! TTTGCTGCTTAGAGCTGATT+GGG - chr2_4:6819224-6819243 Msa0311870:intron 40.0%
! TAGGACACTGAGATGTTTTG+GGG + chr2_4:6819353-6819372 None:intergenic 40.0%
! CTTAGGACACTGAGATGTTT+TGG + chr2_4:6819355-6819374 None:intergenic 40.0%
CAAAACATCTCAGTGTCCTA+AGG - chr2_4:6819353-6819372 Msa0311870:intron 40.0%
ATTCCTTTCTTGGTTCATCG+TGG + chr2_4:6819553-6819572 None:intergenic 40.0%
CGATGAACCAAGAAAGGAAT+TGG - chr2_4:6819553-6819572 Msa0311870:five_prime_UTR 40.0%
!!! GAGCCTTAGTTTTGTGCGAT+TGG + chr2_4:6814077-6814096 None:intergenic 45.0%
AGCATGTTCTCTTACTCCCA+AGG - chr2_4:6814135-6814154 Msa0311870:three_prime_UTR 45.0%
AAGTTCCCAAAAATGGGCAG+TGG - chr2_4:6814560-6814579 Msa0311870:intron 45.0%
!! AGTCTCCACTGCCCATTTTT+GGG + chr2_4:6814568-6814587 None:intergenic 45.0%
AGTGGAGACTCCAAGAAATG+AGG - chr2_4:6814578-6814597 Msa0311870:intron 45.0%
! AAGTTTAGGTGAGTTGGGTC+TGG - chr2_4:6814643-6814662 Msa0311870:intron 45.0%
! AGTTTAGGTGAGTTGGGTCT+GGG - chr2_4:6814644-6814663 Msa0311870:intron 45.0%
! GAGCATTGCCGGAAGAATTA+GGG - chr2_4:6814701-6814720 Msa0311870:intron 45.0%
!! CTTGTCGCCTTTTGGAAGAT+TGG - chr2_4:6814747-6814766 Msa0311870:CDS 45.0%
GGGAGCTTATTGAGATAAGC+TGG - chr2_4:6814934-6814953 Msa0311870:intron 45.0%
TAGAAATGGGCCAATTGTCC+CGG - chr2_4:6815189-6815208 Msa0311870:intron 45.0%
!!! CATTTTTGGGGCTTGCAACA+AGG - chr2_4:6815278-6815297 Msa0311870:intron 45.0%
CGCATATACAATCCTTCCTG+TGG + chr2_4:6815580-6815599 None:intergenic 45.0%
TTGTATATGCGTGCCCAAGA+TGG - chr2_4:6815589-6815608 Msa0311870:intron 45.0%
TGTATATGCGTGCCCAAGAT+GGG - chr2_4:6815590-6815609 Msa0311870:intron 45.0%
CTAGTGTTCGATGAACAACG+CGG + chr2_4:6815765-6815784 None:intergenic 45.0%
GTGTAGCTGAAACTATGCTC+AGG + chr2_4:6815895-6815914 None:intergenic 45.0%
GAAGAGATTCCTGTTGCATC+TGG - chr2_4:6815973-6815992 Msa0311870:intron 45.0%
TAATGTAGCACGGTGCACTT+GGG + chr2_4:6816007-6816026 None:intergenic 45.0%
TTAATGTAGCACGGTGCACT+TGG + chr2_4:6816008-6816027 None:intergenic 45.0%
ACCAGGATGTCTAACCTTCA+CGG + chr2_4:6816073-6816092 None:intergenic 45.0%
AAGGTTAGACATCCTGGTGT+GGG - chr2_4:6816075-6816094 Msa0311870:CDS 45.0%
GTGTGGGAGAATCAATCAGA+AGG - chr2_4:6816091-6816110 Msa0311870:CDS 45.0%
CTTAAGAGCGGGAATGAACA+TGG + chr2_4:6816151-6816170 None:intergenic 45.0%
TGTTCATTCCCGCTCTTAAG+TGG - chr2_4:6816151-6816170 Msa0311870:CDS 45.0%
TTCCCTAGCAAGGTCAACTT+GGG + chr2_4:6816223-6816242 None:intergenic 45.0%
AAGAAACATCCTTCCAGCTG+CGG + chr2_4:6816278-6816297 None:intergenic 45.0%
CAAGTGGATAGACAGGCTTA+GGG + chr2_4:6816302-6816321 None:intergenic 45.0%
ACAAGTGGATAGACAGGCTT+AGG + chr2_4:6816303-6816322 None:intergenic 45.0%
GCTCTTCGTTGGGATTAGAA+AGG - chr2_4:6816943-6816962 Msa0311870:intron 45.0%
GTGCAACTGAAACTATAGGG+TGG - chr2_4:6816973-6816992 Msa0311870:intron 45.0%
! TTTAAGGGTATGGATCCAGC+TGG - chr2_4:6817108-6817127 Msa0311870:intron 45.0%
! TCACTCTCTAAAAGTCCAGC+TGG + chr2_4:6817126-6817145 None:intergenic 45.0%
CCTGGGAATATTCTTGTTCG+GGG - chr2_4:6817386-6817405 Msa0311870:CDS 45.0%
! CTGAACTCTCTGGTAGTGAT+AGG - chr2_4:6817474-6817493 Msa0311870:CDS 45.0%
! TTTTCAAATCTGTTGCCCGC+CGG - chr2_4:6817513-6817532 Msa0311870:CDS 45.0%
CAGAGGAACAAAGGGAAGAA+GGG + chr2_4:6817724-6817743 None:intergenic 45.0%
ACAGAGGAACAAAGGGAAGA+AGG + chr2_4:6817725-6817744 None:intergenic 45.0%
CACGTCAAACAGAGGAACAA+AGG + chr2_4:6817733-6817752 None:intergenic 45.0%
CTTTGTTCCTCTGTTTGACG+TGG - chr2_4:6817731-6817750 Msa0311870:CDS 45.0%
AAAGGTTCAGCGAGGAAACA+AGG + chr2_4:6817784-6817803 None:intergenic 45.0%
ACACACAAAAAGGTTCAGCG+AGG + chr2_4:6817792-6817811 None:intergenic 45.0%
AAAAGGAGAGGAATTTGGCC+TGG + chr2_4:6817864-6817883 None:intergenic 45.0%
GGTTAGATATTAGGGACGGA+GGG + chr2_4:6817974-6817993 None:intergenic 45.0%
TGGTTAGATATTAGGGACGG+AGG + chr2_4:6817975-6817994 None:intergenic 45.0%
AGGGAGGTTACATTAAGGGA+CGG - chr2_4:6818224-6818243 Msa0311870:CDS 45.0%
AGGTTACATTAAGGGACGGA+GGG - chr2_4:6818228-6818247 Msa0311870:CDS 45.0%
GGATGAACTATGTCACCTTC+TGG + chr2_4:6818792-6818811 None:intergenic 45.0%
! CTTTGCTGCTTAGAGCTGAT+TGG - chr2_4:6819223-6819242 Msa0311870:intron 45.0%
ACTCATGGCTCCTTGATTAG+AGG - chr2_4:6819275-6819294 Msa0311870:intron 45.0%
CTCATGGCTCCTTGATTAGA+GGG - chr2_4:6819276-6819295 Msa0311870:intron 45.0%
!! AGGACACTGAGATGTTTTGG+GGG + chr2_4:6819352-6819371 None:intergenic 45.0%
CAAAGAAACGGCAGTCTTGA+GGG + chr2_4:6819382-6819401 None:intergenic 45.0%
ACAAAGAAACGGCAGTCTTG+AGG + chr2_4:6819383-6819402 None:intergenic 45.0%
!!! AGTAATTTTAAATTTAAATT+TGG - chr2_4:6817289-6817308 Msa0311870:CDS 5.0%
! GAGTCTCCACTGCCCATTTT+TGG + chr2_4:6814569-6814588 None:intergenic 50.0%
! GTTTAGGTGAGTTGGGTCTG+GGG - chr2_4:6814645-6814664 Msa0311870:intron 50.0%
TTGGGTCTGGGGATTTACGA+GGG - chr2_4:6814656-6814675 Msa0311870:intron 50.0%
! CTCAAGAGTTCGAGCATTGC+CGG - chr2_4:6814690-6814709 Msa0311870:intron 50.0%
! CGAGCATTGCCGGAAGAATT+AGG - chr2_4:6814700-6814719 Msa0311870:intron 50.0%
TTTGGTCCAACCGGGACAAT+TGG + chr2_4:6815202-6815221 None:intergenic 50.0%
! TGGTGGGTATTTGGTCCAAC+CGG + chr2_4:6815211-6815230 None:intergenic 50.0%
CACACCATTCTCAGATTGCG+TGG - chr2_4:6815365-6815384 Msa0311870:intron 50.0%
! CGCTCTTATTTGCTGGTACC+TGG - chr2_4:6815484-6815503 Msa0311870:intron 50.0%
TTGCATTCTCCCAGCGAAGT+TGG - chr2_4:6815533-6815552 Msa0311870:intron 50.0%
TGCATTCTCCCAGCGAAGTT+GGG - chr2_4:6815534-6815553 Msa0311870:intron 50.0%
TGCAGAACGTTTCCAACCAC+AGG - chr2_4:6815561-6815580 Msa0311870:intron 50.0%
GAACGTTTCCAACCACAGGA+AGG - chr2_4:6815565-6815584 Msa0311870:intron 50.0%
AACGGTCCCATCACAATGGT+TGG + chr2_4:6815703-6815722 None:intergenic 50.0%
TGCAAACGGTCCCATCACAA+TGG + chr2_4:6815707-6815726 None:intergenic 50.0%
AAAAAGATCAGGCCGCGTAG+CGG + chr2_4:6815827-6815846 None:intergenic 50.0%
AGCTGAGTGCATAGATCTCG+AGG + chr2_4:6815850-6815869 None:intergenic 50.0%
GCAATGCTTCCAGATGCAAC+AGG + chr2_4:6815985-6816004 None:intergenic 50.0%
GAAGGTTAGACATCCTGGTG+TGG - chr2_4:6816074-6816093 Msa0311870:CDS 50.0%
! CTGATTGATTCTCCCACACC+AGG + chr2_4:6816090-6816109 None:intergenic 50.0%
! TGTCCCAAGTTGACCTTGCT+AGG - chr2_4:6816217-6816236 Msa0311870:CDS 50.0%
! GTCCCAAGTTGACCTTGCTA+GGG - chr2_4:6816218-6816237 Msa0311870:CDS 50.0%
CTTCCCTAGCAAGGTCAACT+TGG + chr2_4:6816224-6816243 None:intergenic 50.0%
AATACAGCAGGGTGCACAAG+TGG + chr2_4:6816318-6816337 None:intergenic 50.0%
ACTTGTGCACCCTGCTGTAT+TGG - chr2_4:6816317-6816336 Msa0311870:intron 50.0%
CCCCGAACAAGAATATTCCC+AGG + chr2_4:6817389-6817408 None:intergenic 50.0%
TTTCAAATCTGTTGCCCGCC+GGG - chr2_4:6817514-6817533 Msa0311870:CDS 50.0%
AATGTGAGCAGTGAGCCTAC+AGG + chr2_4:6817656-6817675 None:intergenic 50.0%
AGAGGAACCACGTCAAACAG+AGG + chr2_4:6817741-6817760 None:intergenic 50.0%
GTATTCTAACTGGGCCAACC+AGG - chr2_4:6817843-6817862 Msa0311870:CDS 50.0%
GAGGTTACATTAAGGGACGG+AGG - chr2_4:6818227-6818246 Msa0311870:CDS 50.0%
GTTTGGTACCTTGGAGGCTT+TGG - chr2_4:6818328-6818347 Msa0311870:CDS 50.0%
GAATCAGTCCAAAGCCTCCA+AGG + chr2_4:6818339-6818358 None:intergenic 50.0%
AGTTCATCCTGCAGAGTGCA+TGG - chr2_4:6818803-6818822 Msa0311870:intron 50.0%
AATTGCTCCATGCACTCTGC+AGG + chr2_4:6818813-6818832 None:intergenic 50.0%
! TACTGTCATGGTGACGACCT+TGG - chr2_4:6818881-6818900 Msa0311870:intron 50.0%
GCTTAGAGCTGATTGGGCAA+AGG - chr2_4:6819230-6819249 Msa0311870:intron 50.0%
ATGGCTCCTTGATTAGAGGG+AGG - chr2_4:6819279-6819298 Msa0311870:intron 50.0%
GTTGGGTCTGGGGATTTACG+AGG - chr2_4:6814655-6814674 Msa0311870:intron 55.0%
CGGCAATGCTCGAACTCTTG+AGG + chr2_4:6814692-6814711 None:intergenic 55.0%
AATGGGCCAATTGTCCCGGT+TGG - chr2_4:6815193-6815212 Msa0311870:intron 55.0%
GGTGGGTATTTGGTCCAACC+GGG + chr2_4:6815210-6815229 None:intergenic 55.0%
GACCAAATACCCACCACTGC+CGG - chr2_4:6815215-6815234 Msa0311870:intron 55.0%
!! AACCGGCAGTGGTGGGTATT+TGG + chr2_4:6815220-6815239 None:intergenic 55.0%
CATGTAGAACCGGCAGTGGT+GGG + chr2_4:6815227-6815246 None:intergenic 55.0%
GATTGCTCAGGCAGTGAGCT+TGG - chr2_4:6815453-6815472 Msa0311870:intron 55.0%
GCATTCTCCCAGCGAAGTTG+GGG - chr2_4:6815535-6815554 Msa0311870:intron 55.0%
TGCATCTCCCCAACTTCGCT+GGG + chr2_4:6815545-6815564 None:intergenic 55.0%
GCCGTGAAGGTTAGACATCC+TGG - chr2_4:6816069-6816088 Msa0311870:CDS 55.0%
AATGGGCAGCTTCCCTAGCA+AGG + chr2_4:6816233-6816252 None:intergenic 55.0%
GGGTGCACAAGTGGATAGAC+AGG + chr2_4:6816309-6816328 None:intergenic 55.0%
TCTGGCTGTCGCTCTTCGTT+GGG - chr2_4:6816933-6816952 Msa0311870:intron 55.0%
GGCATGACTGCTGAACTCTC+TGG - chr2_4:6817464-6817483 Msa0311870:CDS 55.0%
ACTGAGTGCGCATTCTGCAG+CGG + chr2_4:6817549-6817568 None:intergenic 55.0%
GGAGAGGAATTTGGCCTGGT+TGG + chr2_4:6817860-6817879 None:intergenic 55.0%
!!! ACTTTTTGGGGCACCCCAGA+AGG - chr2_4:6818774-6818793 Msa0311870:intron 55.0%
! GGTGACGACCTTGGTTCTTG+AGG - chr2_4:6818890-6818909 Msa0311870:intron 55.0%
TGGCAGCGAAAGCTTGATCC+TGG - chr2_4:6819174-6819193 Msa0311870:intron 55.0%
GGCAGCGAAAGCTTGATCCT+GGG - chr2_4:6819175-6819194 Msa0311870:intron 55.0%
GTCTGCATCACATCGTACCC+AGG + chr2_4:6819195-6819214 None:intergenic 55.0%
GCGCCACGATGAACCAAGAA+AGG - chr2_4:6819547-6819566 Msa0311870:five_prime_UTR 55.0%
GCATGTAGAACCGGCAGTGG+TGG + chr2_4:6815228-6815247 None:intergenic 60.0%
ACGGCATGTAGAACCGGCAG+TGG + chr2_4:6815231-6815250 None:intergenic 60.0%
CTGCATCTCCCCAACTTCGC+TGG + chr2_4:6815546-6815565 None:intergenic 60.0%
ACCACTGGTGGTTGCCGTGA+AGG - chr2_4:6816056-6816075 Msa0311870:CDS 60.0%
ACCTTCACGGCAACCACCAG+TGG + chr2_4:6816060-6816079 None:intergenic 60.0%
CTCTGGCTGTCGCTCTTCGT+TGG - chr2_4:6816932-6816951 Msa0311870:intron 60.0%
AAATCTGTTGCCCGCCGGGA+TGG - chr2_4:6817518-6817537 Msa0311870:CDS 60.0%
GTGCGCATTCTGCAGCGGTA+CGG + chr2_4:6817544-6817563 None:intergenic 60.0%
GCAGTCTTGAGGGAGCCCTT+AGG + chr2_4:6819372-6819391 None:intergenic 60.0%
CTGCAGCGGTACGGCCATCC+CGG + chr2_4:6817535-6817554 None:intergenic 70.0%
GGGGTCAGTGGGCCGCTACG+CGG - chr2_4:6815812-6815831 Msa0311870:intron 75.0%
AGCGGTACGGCCATCCCGGC+GGG + chr2_4:6817531-6817550 None:intergenic 75.0%
CAGCGGTACGGCCATCCCGG+CGG + chr2_4:6817532-6817551 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 6814009 6819637 6814009 ID=Msa0311870;Name=Msa0311870
chr2_4 mRNA 6814009 6819637 6814009 ID=Msa0311870-mRNA-1;Parent=Msa0311870;Name=Msa0311870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=155|1|1|1|0.75|0.6|5|347|624
chr2_4 exon 6814009 6814475 6814009 ID=Msa0311870-mRNA-1:exon:2633;Parent=Msa0311870-mRNA-1
chr2_4 exon 6814735 6814890 6814735 ID=Msa0311870-mRNA-1:exon:2632;Parent=Msa0311870-mRNA-1
chr2_4 exon 6816033 6816290 6816033 ID=Msa0311870-mRNA-1:exon:2631;Parent=Msa0311870-mRNA-1
chr2_4 exon 6817188 6818535 6817188 ID=Msa0311870-mRNA-1:exon:2630;Parent=Msa0311870-mRNA-1
chr2_4 exon 6819490 6819637 6819490 ID=Msa0311870-mRNA-1:exon:2629;Parent=Msa0311870-mRNA-1
chr2_4 five_prime_UTR 6819490 6819637 6819490 ID=Msa0311870-mRNA-1:five_prime_utr;Parent=Msa0311870-mRNA-1
chr2_4 five_prime_UTR 6818529 6818535 6818529 ID=Msa0311870-mRNA-1:five_prime_utr;Parent=Msa0311870-mRNA-1
chr2_4 CDS 6817188 6818528 6817188 ID=Msa0311870-mRNA-1:cds;Parent=Msa0311870-mRNA-1
chr2_4 CDS 6816033 6816290 6816033 ID=Msa0311870-mRNA-1:cds;Parent=Msa0311870-mRNA-1
chr2_4 CDS 6814735 6814890 6814735 ID=Msa0311870-mRNA-1:cds;Parent=Msa0311870-mRNA-1
chr2_4 CDS 6814356 6814475 6814356 ID=Msa0311870-mRNA-1:cds;Parent=Msa0311870-mRNA-1
chr2_4 three_prime_UTR 6814009 6814355 6814009 ID=Msa0311870-mRNA-1:three_prime_utr;Parent=Msa0311870-mRNA-1
Gene Sequence

>Msa0311870

ATGCTTAGAGCGATAAAGAGAGCTGCCCAGTCCGTTCATAAAATAAATAGAGGCAGATACGTGGAAGTGAGTAGAAATGGGCCAATTGTCCCGGTTGGACCAAATACCCACCACTGCCGGTTCTACATGCCGTATAAGTTTCATAATGAAGCACGTAGTTCATTTTTGGGGCTTGCAACAAGGGAAAGCTTTAACAAATGTGGTTCTTTTAGAAACTTTTGTGTAAGATCAGCGAGTAATGAATTCACACACCATTCTCAGATTGCGTGGAAAAGGCTGTACAGAAAGTACTGTTCCAGTGGTGATAGTAGTAGATTTTCTCCCACCATAAATATGATTGCTCAGGCAGTGAGCTTGGCTTTGACTCGCTCTTATTTGCTGGTACCTGGTATTTTTGCATTTACATGTGGAGAGCTTGCATTCTCCCAGCGAAGTTGGGGAGATGCAGAACGTTTCCAACCACAGGAAGGATTGTATATGCGTGCCCAAGATGGGTATAATTACATGTTTACATTTACGTTCATGATAGTTGAAGGTTTTGTCTTATTAGCGAGGGCTCTATATCTAGCAATATTATTCACTCCAACCATTGTGATGGGACCGTTTGCAGATTATTTTGGACCAAATTTTAGGAAACTATGGCTCCGCGTTGTTCATCGAACACTAGAAAAAGCAGGTCCTGCTTTCATAAAATGGGGTCAGTGGGCCGCTACGCGGCCTGATCTTTTTCCTCGAGATCTATGCACTCAGCTTTCTGAACTTCATAGTAAAGCTCCTGAGCATAGTTTCAGCTACACAAAGAAAACCATTGAAAAAGCATTTAACCGAAAACTTCCCGAAATTTTTGACAATTTTGAAGAGATTCCTGTTGCATCTGGAAGCATTGCCCAAGTGCACCGTGCTACATTAAAATATCGTTATCCTGGTAAACAAGCAAAACCACTGGTGGTTGCCGTGAAGGTTAGACATCCTGGTGTGGGAGAATCAATCAGAAGGGATTTTGCTATTATCAATACGGCAGCAAAAATTTCCATGTTCATTCCCGCTCTTAAGTGGTTAAGATTAGATGAGAGTGTACAACAATTTGCAGTTTTTATGATGTCCCAAGTTGACCTTGCTAGGGAAGCTGCCCATTTGAACCGCTTCATTTATAATTTCCGCAGCTGGAAGGATGTTTCTTTCCCTAAGCCTGTCTATCCACTTGTGCACCCTGCTGTATTGGTAGAAACATATGAAAAGGGAGAAAGTGTCTCACGTTATGTTGATGGTTTTCAAGGACAAGAACATTTTAAATCTGCTCTTGCTCATATTGGGACTCATGCACTTTTGAAGATGCTTCTGGTGGACAACTTCATTCATGCAGATATGCATCCTGGGAATATTCTTGTTCGGGGCAAGTCTAGCAAACGACTTTTCAGATCAAAGCCTCATGTAATTTTCTTAGACGTAGGCATGACTGCTGAACTCTCTGGTAGTGATAGGGTAAATTTATTGGAATTTTTCAAATCTGTTGCCCGCCGGGATGGCCGTACCGCTGCAGAATGCGCACTCAGTTTATCGAAGAAACAGAATTGTCCTAATCCAAAGGCTTTCATTGAGGAAGTGGAAGAGGCATTTACTTTTTGGGGCACCCCAGAAGGTGACATAGTTCATCCTGCAGAGTGCATGGAGCAATTACTTGAGAAAGTCAGGCGTCATAGAGTTAATATTGATGGTAATGTTTGTACTGTCATGGTGACGACCTTGGTTCTTGAGGGTTGGCAGCGAAAGCTTGATCCTGGGTACGATGTGATGCAGACGCTGCAGACTTTGCTGCTTAGAGCTGATTGGGCAAAGGACCTTTCTTACACAATTGATGGACTCATGGCTCCTTGA
Protein sequence

>Msa0311870

MLRAIKRAAQSVHKINRGRYVEVSRNGPIVPVGPNTHHCRFYMPYKFHNEARSSFLGLATRESFNKCGSFRNFCVRSASNEFTHHSQIAWKRLYRKYCSSGDSSRFSPTINMIAQAVSLALTRSYLLVPGIFAFTCGELAFSQRSWGDAERFQPQEGLYMRAQDGYNYMFTFTFMIVEGFVLLARALYLAILFTPTIVMGPFADYFGPNFRKLWLRVVHRTLEKAGPAFIKWGQWAATRPDLFPRDLCTQLSELHSKAPEHSFSYTKKTIEKAFNRKLPEIFDNFEEIPVASGSIAQVHRATLKYRYPGKQAKPLVVAVKVRHPGVGESIRRDFAIINTAAKISMFIPALKWLRLDESVQQFAVFMMSQVDLAREAAHLNRFIYNFRSWKDVSFPKPVYPLVHPAVLVETYEKGESVSRYVDGFQGQEHFKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRGKSSKRLFRSKPHVIFLDVGMTAELSGSDRVNLLEFFKSVARRDGRTAAECALSLSKKQNCPNPKAFIEEVEEAFTFWGTPEGDIVHPAECMEQLLEKVRRHRVNIDGNVCTVMVTTLVLEGWQRKLDPGYDVMQTLQTLLLRADWAKDLSYTIDGLMAP*