Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425840 | KEH36503.1 | 84.861 | 469 | 13 | 4 | 1 | 411 | 52 | 520 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425840 | sp|Q55G83|ABKC_DICDI | 37.544 | 285 | 112 | 7 | 185 | 413 | 159 | 433 | 2.50e-46 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425840 | A0A072V582 | 84.861 | 469 | 13 | 4 | 1 | 411 | 52 | 520 | 0.0 | 793 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1407680 | Msa1425840 | 0.817546 | 3.117512e-52 | -8.615850e-47 |
| Msa1425840 | Msa1449760 | 0.807675 | 4.502572e-50 | -8.615850e-47 |
| Msa0829610 | Msa1425840 | 0.873035 | 2.007473e-67 | -8.615850e-47 |
| Msa0191240 | Msa1425840 | 0.870601 | 1.290186e-66 | -8.615850e-47 |
| Msa0375900 | Msa1425840 | 0.809628 | 1.722456e-50 | -8.615850e-47 |
| Msa0311870 | Msa1425840 | 0.874757 | 5.261486e-68 | -8.615850e-47 |
| Msa0867900 | Msa1425840 | 0.871096 | 8.865636e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425840 | MtrunA17_Chr2g0281061 | 84.861 | 469 | 13 | 4 | 1 | 411 | 1 | 469 | 0.0 | 792 |
| Msa1425840 | MtrunA17_Chr4g0048521 | 62.069 | 464 | 116 | 4 | 1 | 406 | 6 | 467 | 0.0 | 551 |
| Msa1425840 | MtrunA17_Chr8g0360981 | 47.380 | 439 | 155 | 6 | 31 | 406 | 31 | 456 | 3.36e-124 | 373 |
| Msa1425840 | MtrunA17_Chr3g0129101 | 25.792 | 221 | 116 | 6 | 218 | 405 | 240 | 445 | 2.65e-11 | 65.5 |
| Msa1425840 | MtrunA17_Chr3g0120791 | 24.896 | 241 | 140 | 8 | 195 | 405 | 213 | 442 | 3.37e-11 | 65.1 |
| Msa1425840 | MtrunA17_Chr4g0012061 | 25.391 | 256 | 130 | 8 | 206 | 415 | 162 | 402 | 7.94e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425840 | AT1G11390.1 | 55.890 | 399 | 108 | 5 | 71 | 410 | 77 | 466 | 3.01e-148 | 435 |
| Msa1425840 | AT1G61640.3 | 48.608 | 395 | 142 | 5 | 71 | 406 | 67 | 459 | 5.21e-119 | 359 |
| Msa1425840 | AT1G61640.1 | 48.608 | 395 | 142 | 6 | 71 | 406 | 67 | 459 | 1.88e-118 | 358 |
| Msa1425840 | AT1G61640.2 | 49.271 | 343 | 138 | 3 | 71 | 379 | 67 | 407 | 2.69e-107 | 325 |
| Msa1425840 | AT1G65950.1 | 31.532 | 222 | 116 | 6 | 218 | 414 | 134 | 344 | 5.50e-19 | 89.7 |
| Msa1425840 | AT1G65950.2 | 31.532 | 222 | 116 | 6 | 218 | 414 | 134 | 344 | 5.65e-19 | 89.0 |
| Msa1425840 | AT5G50330.1 | 26.609 | 233 | 117 | 6 | 214 | 405 | 96 | 315 | 1.32e-13 | 72.8 |
| Msa1425840 | AT4G24810.5 | 27.984 | 243 | 110 | 8 | 214 | 410 | 53 | 276 | 3.48e-13 | 70.5 |
| Msa1425840 | AT4G24810.4 | 27.984 | 243 | 110 | 8 | 214 | 410 | 53 | 276 | 4.09e-13 | 70.1 |
| Msa1425840 | AT4G24810.2 | 27.459 | 244 | 112 | 7 | 214 | 411 | 96 | 320 | 4.65e-13 | 71.2 |
| Msa1425840 | AT4G24810.6 | 27.869 | 244 | 111 | 8 | 214 | 411 | 53 | 277 | 4.92e-13 | 70.9 |
| Msa1425840 | AT4G24810.1 | 27.869 | 244 | 111 | 8 | 214 | 411 | 53 | 277 | 4.92e-13 | 70.9 |
| Msa1425840 | AT5G64940.1 | 24.373 | 279 | 156 | 7 | 167 | 405 | 197 | 460 | 7.89e-12 | 67.8 |
| Msa1425840 | AT5G64940.2 | 24.373 | 279 | 156 | 7 | 167 | 405 | 197 | 460 | 7.89e-12 | 67.8 |
Find 96 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACCGTTTGCAGATTATTT+TGG | 0.196932 | tig0025900:-1770 | Msa1425840:CDS |
| TGCCTGAGCAATCATATTTA+TGG | 0.231958 | tig0025900:+2042 | Msa1425840:intergenic |
| AGCCATAGTTTCCTAAAATT+TGG | 0.244909 | tig0025900:+1746 | Msa1425840:intergenic |
| TCCTGGGAATATTCTTGTTC+GGG | 0.277946 | tig0025900:-112 | Msa1425840:CDS |
| TTTGACTCGCTCTTATTTGC+TGG | 0.307748 | tig0025900:-2008 | Msa1425840:CDS |
| CTGCATCTCCCCAACTTCGC+TGG | 0.337075 | tig0025900:+1942 | Msa1425840:intergenic |
| GCTTCATTATGAAACTTATA+CGG | 0.339442 | tig0025900:+2238 | Msa1425840:intergenic |
| ATCCTGGGAATATTCTTGTT+CGG | 0.355681 | tig0025900:-113 | Msa1425840:CDS |
| TGCATTCTCCCAGCGAAGTT+GGG | 0.356054 | tig0025900:-1951 | Msa1425840:CDS |
| AGTGTCTCACGTTATGTTGA+TGG | 0.359513 | tig0025900:-1124 | Msa1425840:intron |
| CGCTCTTATTTGCTGGTACC+TGG | 0.380022 | tig0025900:-2001 | Msa1425840:CDS |
| TACGTGGAAGTGAGTAGAAA+TGG | 0.384419 | tig0025900:-2310 | Msa1425840:CDS |
| TATAAATGAAGCGGTTCAAA+TGG | 0.389020 | tig0025900:+1238 | Msa1425840:intergenic |
| TGGTGGGTATTTGGTCCAAC+CGG | 0.393551 | tig0025900:+2277 | Msa1425840:intergenic |
| ACATGTAATTATACCCATCT+TGG | 0.394243 | tig0025900:+1882 | Msa1425840:intergenic |
| ACAAGTGGATAGACAGGCTT+AGG | 0.396500 | tig0025900:+1186 | Msa1425840:intergenic |
| AACCGGCAGTGGTGGGTATT+TGG | 0.401639 | tig0025900:+2268 | Msa1425840:intergenic |
| CTTCCCTAGCAAGGTCAACT+TGG | 0.407373 | tig0025900:+1265 | Msa1425840:intergenic |
| GAAGAGATTCCTGTTGCATC+TGG | 0.418717 | tig0025900:-1513 | Msa1425840:CDS |
| TTTGGTCCAACCGGGACAAT+TGG | 0.420166 | tig0025900:+2286 | Msa1425840:intergenic |
| TTTACGTTCATGATAGTTGA+AGG | 0.437184 | tig0025900:-1854 | Msa1425840:CDS |
| ACTTGTGCACCCTGCTGTAT+TGG | 0.440205 | tig0025900:-1169 | Msa1425840:CDS |
| TCATTTATAATTTCCGCAGC+TGG | 0.441166 | tig0025900:-1224 | Msa1425840:CDS |
| ATTCATGCAGATATGCATCC+TGG | 0.451986 | tig0025900:-129 | Msa1425840:CDS |
| ACTTATACGGCATGTAGAAC+CGG | 0.458097 | tig0025900:+2251 | Msa1425840:intergenic |
| ATTCTCAGATTGCGTGGAAA+AGG | 0.458269 | tig0025900:-2114 | Msa1425840:CDS |
| CACCATAAATATGATTGCTC+AGG | 0.470184 | tig0025900:-2044 | Msa1425840:CDS |
| TTGCATTCTCCCAGCGAAGT+TGG | 0.471522 | tig0025900:-1952 | Msa1425840:CDS |
| TTAATGTAGCACGGTGCACT+TGG | 0.476026 | tig0025900:+1481 | Msa1425840:intergenic |
| TGCATCTCCCCAACTTCGCT+GGG | 0.476786 | tig0025900:+1943 | Msa1425840:intergenic |
| CATGTAATTATACCCATCTT+GGG | 0.480516 | tig0025900:+1883 | Msa1425840:intergenic |
| TGTTCATTCCCGCTCTTAAG+TGG | 0.482039 | tig0025900:-1335 | Msa1425840:CDS |
| GATTGCTCAGGCAGTGAGCT+TGG | 0.483437 | tig0025900:-2032 | Msa1425840:CDS |
| TATGTTTCTACCAATACAGC+AGG | 0.484385 | tig0025900:+1159 | Msa1425840:intergenic |
| TTGTATATGCGTGCCCAAGA+TGG | 0.484797 | tig0025900:-1896 | Msa1425840:CDS |
| TGTCCCAAGTTGACCTTGCT+AGG | 0.497358 | tig0025900:-1269 | Msa1425840:CDS |
| ACATTAAAATATCGTTATCC+TGG | 0.498375 | tig0025900:-1465 | Msa1425840:CDS |
| ATTGGTAGAAACATATGAAA+AGG | 0.499702 | tig0025900:-1151 | Msa1425840:CDS |
| GCCGTGAAGGTTAGACATCC+TGG | 0.500885 | tig0025900:-1417 | Msa1425840:CDS |
| CTGATTGATTCTCCCACACC+AGG | 0.506024 | tig0025900:+1399 | Msa1425840:intergenic |
| ACCACTGGTGGTTGCCGTGA+AGG | 0.510120 | tig0025900:-1430 | Msa1425840:CDS |
| ACCAGGATGTCTAACCTTCA+CGG | 0.516286 | tig0025900:+1416 | Msa1425840:intergenic |
| GACCAAATACCCACCACTGC+CGG | 0.518056 | tig0025900:-2270 | Msa1425840:CDS |
| TATACAATCCTTCCTGTGGT+TGG | 0.519758 | tig0025900:+1912 | Msa1425840:intergenic |
| AACGGTCCCATCACAATGGT+TGG | 0.522108 | tig0025900:+1785 | Msa1425840:intergenic |
| GGGTGCACAAGTGGATAGAC+AGG | 0.530159 | tig0025900:+1180 | Msa1425840:intergenic |
| ACGTGGAAGTGAGTAGAAAT+GGG | 0.531630 | tig0025900:-2309 | Msa1425840:CDS |
| ATTCACTCCAACCATTGTGA+TGG | 0.532321 | tig0025900:-1792 | Msa1425840:CDS |
| TGTATATGCGTGCCCAAGAT+GGG | 0.535161 | tig0025900:-1895 | Msa1425840:CDS |
| TGCAGAACGTTTCCAACCAC+AGG | 0.535550 | tig0025900:-1924 | Msa1425840:CDS |
| TCCGTTCATAAAATAAATAG+AGG | 0.535725 | tig0025900:-2337 | Msa1425840:CDS |
| AAATCTACTACTATCACCAC+TGG | 0.538008 | tig0025900:+2072 | Msa1425840:intergenic |
| CTTAAGAGCGGGAATGAACA+TGG | 0.538208 | tig0025900:+1338 | Msa1425840:intergenic |
| TAGAAATGGGCCAATTGTCC+CGG | 0.538260 | tig0025900:-2296 | Msa1425840:CDS |
| AATCTTAACCACTTAAGAGC+GGG | 0.544613 | tig0025900:+1327 | Msa1425840:intergenic |
| ATAAATGAAGCGGTTCAAAT+GGG | 0.546042 | tig0025900:+1239 | Msa1425840:intergenic |
| GCATGTAGAACCGGCAGTGG+TGG | 0.550140 | tig0025900:+2260 | Msa1425840:intergenic |
| TTCACTCCAACCATTGTGAT+GGG | 0.551609 | tig0025900:-1791 | Msa1425840:CDS |
| GCATTCTCCCAGCGAAGTTG+GGG | 0.555043 | tig0025900:-1950 | Msa1425840:CDS |
| CACACCATTCTCAGATTGCG+TGG | 0.555938 | tig0025900:-2120 | Msa1425840:CDS |
| GCAATGCTTCCAGATGCAAC+AGG | 0.562469 | tig0025900:+1504 | Msa1425840:intergenic |
| AATGGGCCAATTGTCCCGGT+TGG | 0.564966 | tig0025900:-2292 | Msa1425840:CDS |
| TTCCCTAGCAAGGTCAACTT+GGG | 0.566297 | tig0025900:+1266 | Msa1425840:intergenic |
| GTGTAGCTGAAACTATGCTC+AGG | 0.567262 | tig0025900:+1594 | Msa1425840:intergenic |
| CTGAGCAATCATATTTATGG+TGG | 0.567808 | tig0025900:+2045 | Msa1425840:intergenic |
| TTCATGCAGATATGCATCCT+GGG | 0.568436 | tig0025900:-128 | Msa1425840:CDS |
| ACCTTCACGGCAACCACCAG+TGG | 0.571742 | tig0025900:+1429 | Msa1425840:intergenic |
| AGGGAAAGCTTTAACAAATG+TGG | 0.575031 | tig0025900:-2187 | Msa1425840:CDS |
| GGTCCAAAATAATCTGCAAA+CGG | 0.575702 | tig0025900:+1767 | Msa1425840:intergenic |
| CATGTAGAACCGGCAGTGGT+GGG | 0.575943 | tig0025900:+2261 | Msa1425840:intergenic |
| TTATAATTTCCGCAGCTGGA+AGG | 0.578670 | tig0025900:-1220 | Msa1425840:CDS |
| GTGTGGGAGAATCAATCAGA+AGG | 0.581866 | tig0025900:-1395 | Msa1425840:CDS |
| CCCCGAACAAGAATATTCCC+AGG | 0.587079 | tig0025900:+111 | Msa1425840:intergenic |
| GGTGGGTATTTGGTCCAACC+GGG | 0.587788 | tig0025900:+2278 | Msa1425840:intergenic |
| AATACAGCAGGGTGCACAAG+TGG | 0.588357 | tig0025900:+1171 | Msa1425840:intergenic |
| GTCCCAAGTTGACCTTGCTA+GGG | 0.588745 | tig0025900:-1268 | Msa1425840:CDS |
| AATGGGCAGCTTCCCTAGCA+AGG | 0.589522 | tig0025900:+1256 | Msa1425840:intergenic |
| TAATGTAGCACGGTGCACTT+GGG | 0.600061 | tig0025900:+1482 | Msa1425840:intergenic |
| AAGGTTAGACATCCTGGTGT+GGG | 0.602666 | tig0025900:-1411 | Msa1425840:CDS |
| ACGGCATGTAGAACCGGCAG+TGG | 0.607529 | tig0025900:+2257 | Msa1425840:intergenic |
| AAGAAACATCCTTCCAGCTG+CGG | 0.618231 | tig0025900:+1211 | Msa1425840:intergenic |
| TGCGGAAATTATAAATGAAG+CGG | 0.620081 | tig0025900:+1229 | Msa1425840:intergenic |
| TACAGAAAGTACTGTTCCAG+TGG | 0.620946 | tig0025900:-2088 | Msa1425840:CDS |
| CGCATATACAATCCTTCCTG+TGG | 0.621310 | tig0025900:+1908 | Msa1425840:intergenic |
| GAAGGTTAGACATCCTGGTG+TGG | 0.621587 | tig0025900:-1412 | Msa1425840:CDS |
| CAAGTGGATAGACAGGCTTA+GGG | 0.625206 | tig0025900:+1187 | Msa1425840:intergenic |
| TGGTAAACAAGCAAAACCAC+TGG | 0.628724 | tig0025900:-1445 | Msa1425840:CDS |
| TGAGCAATCATATTTATGGT+GGG | 0.639230 | tig0025900:+2046 | Msa1425840:intergenic |
| GAACGTTTCCAACCACAGGA+AGG | 0.642315 | tig0025900:-1920 | Msa1425840:CDS |
| CCTGGGAATATTCTTGTTCG+GGG | 0.646006 | tig0025900:-111 | Msa1425840:CDS |
| AATAAATAGAGGCAGATACG+TGG | 0.651014 | tig0025900:-2326 | Msa1425840:CDS |
| TGCAAACGGTCCCATCACAA+TGG | 0.656016 | tig0025900:+1781 | Msa1425840:intergenic |
| TAATCTTAACCACTTAAGAG+CGG | 0.658895 | tig0025900:+1326 | Msa1425840:intergenic |
| TGTGGGAGAATCAATCAGAA+GGG | 0.688516 | tig0025900:-1394 | Msa1425840:CDS |
| TAAACAAGCAAAACCACTGG+TGG | 0.694708 | tig0025900:-1442 | Msa1425840:CDS |
| ATGTTTCTACCAATACAGCA+GGG | 0.721417 | tig0025900:+1160 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAATTGTCAAAAATTT+CGG | + | tig0025900:914-933 | Msa1425840:intergenic | 15.0% |
| !!! | AAAAAATGTTTTAGATTTAG+AGG | + | tig0025900:2193-2212 | Msa1425840:intergenic | 15.0% |
| !!! | TAAAACATTTTTTGTATCTA+CGG | - | tig0025900:2200-2219 | Msa1425840:CDS | 15.0% |
| !! | TTCAAAATTGTCAAAAATTT+CGG | + | tig0025900:914-933 | Msa1425840:intergenic | 15.0% |
| !!! | AAAAAATGTTTTAGATTTAG+AGG | + | tig0025900:2193-2212 | Msa1425840:intergenic | 15.0% |
| !!! | TAAAACATTTTTTGTATCTA+CGG | - | tig0025900:2200-2219 | Msa1425840:CDS | 15.0% |
| !!! | ATTATTTTGGACCAAATTTT+AGG | - | tig0025900:687-706 | Msa1425840:intron | 20.0% |
| !! | TCAAAATTGTCAAAAATTTC+GGG | + | tig0025900:913-932 | Msa1425840:intergenic | 20.0% |
| !!! | ATAAAAACGAAGTGTTATAA+AGG | - | tig0025900:1508-1527 | Msa1425840:CDS | 20.0% |
| !! | TCAAAAAAAATTACATTGTG+AGG | + | tig0025900:1538-1557 | Msa1425840:intergenic | 20.0% |
| !! | TATTAGATAACAAGTTATCT+TGG | + | tig0025900:1760-1779 | Msa1425840:intergenic | 20.0% |
| !!! | ATATTTAGCTTTCCTTTTTA+AGG | - | tig0025900:2048-2067 | Msa1425840:CDS | 20.0% |
| !!! | TATTTAGCTTTCCTTTTTAA+GGG | - | tig0025900:2049-2068 | Msa1425840:CDS | 20.0% |
| !! | GAATAAAAAAAAAATCCCAT+TGG | + | tig0025900:2122-2141 | Msa1425840:intergenic | 20.0% |
| !!! | GGATTTTTTTTTTATTCTAG+CGG | - | tig0025900:2125-2144 | Msa1425840:CDS | 20.0% |
| !!! | TTTAAAATTACTGCTTACAA+GGG | + | tig0025900:2234-2253 | Msa1425840:intergenic | 20.0% |
| !!! | ATTTAAAATTACTGCTTACA+AGG | + | tig0025900:2235-2254 | Msa1425840:intergenic | 20.0% |
| !!! | GTAAGCAGTAATTTTAAATT+TGG | - | tig0025900:2236-2255 | Msa1425840:CDS | 20.0% |
| !!! | ATTATTTTGGACCAAATTTT+AGG | - | tig0025900:687-706 | Msa1425840:intron | 20.0% |
| !! | TCAAAATTGTCAAAAATTTC+GGG | + | tig0025900:913-932 | Msa1425840:intergenic | 20.0% |
| !!! | ATAAAAACGAAGTGTTATAA+AGG | - | tig0025900:1508-1527 | Msa1425840:CDS | 20.0% |
| !! | TCAAAAAAAATTACATTGTG+AGG | + | tig0025900:1538-1557 | Msa1425840:intergenic | 20.0% |
| !! | TATTAGATAACAAGTTATCT+TGG | + | tig0025900:1760-1779 | Msa1425840:intergenic | 20.0% |
| !!! | ATATTTAGCTTTCCTTTTTA+AGG | - | tig0025900:2048-2067 | Msa1425840:CDS | 20.0% |
| !!! | TATTTAGCTTTCCTTTTTAA+GGG | - | tig0025900:2049-2068 | Msa1425840:CDS | 20.0% |
| !! | GAATAAAAAAAAAATCCCAT+TGG | + | tig0025900:2122-2141 | Msa1425840:intergenic | 20.0% |
| !!! | GGATTTTTTTTTTATTCTAG+CGG | - | tig0025900:2125-2144 | Msa1425840:CDS | 20.0% |
| !!! | TTTAAAATTACTGCTTACAA+GGG | + | tig0025900:2234-2253 | Msa1425840:intergenic | 20.0% |
| !!! | ATTTAAAATTACTGCTTACA+AGG | + | tig0025900:2235-2254 | Msa1425840:intergenic | 20.0% |
| !!! | GTAAGCAGTAATTTTAAATT+TGG | - | tig0025900:2236-2255 | Msa1425840:CDS | 20.0% |
| !!! | ATTTATTTTATGAACGGACT+GGG | + | tig0025900:105-124 | None:intergenic | 25.0% |
| !!! | TATTTATTTTATGAACGGAC+TGG | + | tig0025900:106-125 | None:intergenic | 25.0% |
| ! | TCCGTTCATAAAATAAATAG+AGG | - | tig0025900:107-126 | Msa1425840:CDS | 25.0% |
| !!! | GCCTCTATTTATTTTATGAA+CGG | + | tig0025900:111-130 | Msa1425840:intergenic | 25.0% |
| ! | GCTTCATTATGAAACTTATA+CGG | + | tig0025900:209-228 | Msa1425840:intergenic | 25.0% |
| !!! | AACGATATTTTAATGTAGCA+CGG | + | tig0025900:975-994 | Msa1425840:intergenic | 25.0% |
| ! | ACATTAAAATATCGTTATCC+TGG | - | tig0025900:979-998 | Msa1425840:intron | 25.0% |
| !!! | GGATTTTGCTATTATCAATA+CGG | - | tig0025900:1071-1090 | Msa1425840:intron | 25.0% |
| ! | ATTGGTAGAAACATATGAAA+AGG | - | tig0025900:1293-1312 | Msa1425840:CDS | 25.0% |
| !! | ACATTGCTATCATATAGTTT+TGG | - | tig0025900:1447-1466 | Msa1425840:CDS | 25.0% |
| !!! | GGATTGATGAATGAATTTTT+TGG | - | tig0025900:1682-1701 | Msa1425840:intron | 25.0% |
| ! | CTATATCTTGACAAAGAAAA+CGG | + | tig0025900:1841-1860 | Msa1425840:intergenic | 25.0% |
| ! | TGTAACAAATAACAGATATC+TGG | + | tig0025900:2156-2175 | Msa1425840:intergenic | 25.0% |
| !!! | ATTTATTTTATGAACGGACT+GGG | + | tig0025900:105-124 | Msa1425840:intergenic | 25.0% |
| !!! | TATTTATTTTATGAACGGAC+TGG | + | tig0025900:106-125 | Msa1425840:intergenic | 25.0% |
| ! | TCCGTTCATAAAATAAATAG+AGG | - | tig0025900:107-126 | Msa1425840:CDS | 25.0% |
| !!! | GCCTCTATTTATTTTATGAA+CGG | + | tig0025900:111-130 | Msa1425840:intergenic | 25.0% |
| ! | GCTTCATTATGAAACTTATA+CGG | + | tig0025900:209-228 | Msa1425840:intergenic | 25.0% |
| !!! | AACGATATTTTAATGTAGCA+CGG | + | tig0025900:975-994 | Msa1425840:intergenic | 25.0% |
| ! | ACATTAAAATATCGTTATCC+TGG | - | tig0025900:979-998 | Msa1425840:intron | 25.0% |
| !!! | GGATTTTGCTATTATCAATA+CGG | - | tig0025900:1071-1090 | Msa1425840:intron | 25.0% |
| ! | ATTGGTAGAAACATATGAAA+AGG | - | tig0025900:1293-1312 | Msa1425840:CDS | 25.0% |
| !! | ACATTGCTATCATATAGTTT+TGG | - | tig0025900:1447-1466 | Msa1425840:CDS | 25.0% |
| !!! | GGATTGATGAATGAATTTTT+TGG | - | tig0025900:1682-1701 | Msa1425840:intron | 25.0% |
| ! | CTATATCTTGACAAAGAAAA+CGG | + | tig0025900:1841-1860 | Msa1425840:intergenic | 25.0% |
| ! | TGTAACAAATAACAGATATC+TGG | + | tig0025900:2156-2175 | Msa1425840:intergenic | 25.0% |
| TGAGCAATCATATTTATGGT+GGG | + | tig0025900:401-420 | Msa1425840:intergenic | 30.0% | |
| CATGTAAATGCAAAAATACC+AGG | + | tig0025900:464-483 | Msa1425840:intergenic | 30.0% | |
| !! | GGTATTTTTGCATTTACATG+TGG | - | tig0025900:464-483 | Msa1425840:intron | 30.0% |
| CATGTAATTATACCCATCTT+GGG | + | tig0025900:564-583 | Msa1425840:intergenic | 30.0% | |
| ACATGTAATTATACCCATCT+TGG | + | tig0025900:565-584 | Msa1425840:intergenic | 30.0% | |
| TTTACGTTCATGATAGTTGA+AGG | - | tig0025900:590-609 | Msa1425840:intron | 30.0% | |
| !! | GACCAAATTTTAGGAAACTA+TGG | - | tig0025900:696-715 | Msa1425840:intron | 30.0% |
| AGCCATAGTTTCCTAAAATT+TGG | + | tig0025900:701-720 | Msa1425840:intergenic | 30.0% | |
| !!! | TCGGTTAAATGCTTTTTCAA+TGG | + | tig0025900:884-903 | Msa1425840:intergenic | 30.0% |
| ! | CAAAAATTTCGGGAAGTTTT+CGG | + | tig0025900:903-922 | Msa1425840:intergenic | 30.0% |
| TAATCTTAACCACTTAAGAG+CGG | + | tig0025900:1121-1140 | Msa1425840:intergenic | 30.0% | |
| ATAAATGAAGCGGTTCAAAT+GGG | + | tig0025900:1208-1227 | Msa1425840:intergenic | 30.0% | |
| TATAAATGAAGCGGTTCAAA+TGG | + | tig0025900:1209-1228 | Msa1425840:intergenic | 30.0% | |
| TGCGGAAATTATAAATGAAG+CGG | + | tig0025900:1218-1237 | Msa1425840:intergenic | 30.0% | |
| ACAAATCAACAATGTCCAAA+AGG | + | tig0025900:1480-1499 | Msa1425840:intergenic | 30.0% | |
| AGAGAAATTGTTAGTCCATT+TGG | - | tig0025900:1620-1639 | Msa1425840:CDS | 30.0% | |
| TCTAATAAGCAAGTGTGAAT+CGG | - | tig0025900:1773-1792 | Msa1425840:CDS | 30.0% | |
| !!! | ATCCTTTTTAAAACAGACTC+TGG | - | tig0025900:1871-1890 | Msa1425840:CDS | 30.0% |
| GATCATTATTACAAAGACCT+TGG | - | tig0025900:1980-1999 | Msa1425840:CDS | 30.0% | |
| CAGTAAAATTACTCATACCA+AGG | + | tig0025900:2000-2019 | Msa1425840:intergenic | 30.0% | |
| TGAGCAATCATATTTATGGT+GGG | + | tig0025900:401-420 | Msa1425840:intergenic | 30.0% | |
| CATGTAAATGCAAAAATACC+AGG | + | tig0025900:464-483 | Msa1425840:intergenic | 30.0% | |
| !! | GGTATTTTTGCATTTACATG+TGG | - | tig0025900:464-483 | Msa1425840:intron | 30.0% |
| CATGTAATTATACCCATCTT+GGG | + | tig0025900:564-583 | Msa1425840:intergenic | 30.0% | |
| ACATGTAATTATACCCATCT+TGG | + | tig0025900:565-584 | Msa1425840:intergenic | 30.0% | |
| TTTACGTTCATGATAGTTGA+AGG | - | tig0025900:590-609 | Msa1425840:intron | 30.0% | |
| !! | GACCAAATTTTAGGAAACTA+TGG | - | tig0025900:696-715 | Msa1425840:intron | 30.0% |
| AGCCATAGTTTCCTAAAATT+TGG | + | tig0025900:701-720 | Msa1425840:intergenic | 30.0% | |
| !!! | TCGGTTAAATGCTTTTTCAA+TGG | + | tig0025900:884-903 | Msa1425840:intergenic | 30.0% |
| ! | CAAAAATTTCGGGAAGTTTT+CGG | + | tig0025900:903-922 | Msa1425840:intergenic | 30.0% |
| TAATCTTAACCACTTAAGAG+CGG | + | tig0025900:1121-1140 | Msa1425840:intergenic | 30.0% | |
| ATAAATGAAGCGGTTCAAAT+GGG | + | tig0025900:1208-1227 | Msa1425840:intergenic | 30.0% | |
| TATAAATGAAGCGGTTCAAA+TGG | + | tig0025900:1209-1228 | Msa1425840:intergenic | 30.0% | |
| TGCGGAAATTATAAATGAAG+CGG | + | tig0025900:1218-1237 | Msa1425840:intergenic | 30.0% | |
| ACAAATCAACAATGTCCAAA+AGG | + | tig0025900:1480-1499 | Msa1425840:intergenic | 30.0% | |
| AGAGAAATTGTTAGTCCATT+TGG | - | tig0025900:1620-1639 | Msa1425840:CDS | 30.0% | |
| TCTAATAAGCAAGTGTGAAT+CGG | - | tig0025900:1773-1792 | Msa1425840:CDS | 30.0% | |
| !!! | ATCCTTTTTAAAACAGACTC+TGG | - | tig0025900:1871-1890 | Msa1425840:CDS | 30.0% |
| GATCATTATTACAAAGACCT+TGG | - | tig0025900:1980-1999 | Msa1425840:CDS | 30.0% | |
| CAGTAAAATTACTCATACCA+AGG | + | tig0025900:2000-2019 | Msa1425840:intergenic | 30.0% | |
| AATAAATAGAGGCAGATACG+TGG | - | tig0025900:118-137 | Msa1425840:CDS | 35.0% | |
| ! | TGAAGCACGTAGTTCATTTT+TGG | - | tig0025900:223-242 | Msa1425840:intron | 35.0% |
| !! | GAAGCACGTAGTTCATTTTT+GGG | - | tig0025900:224-243 | Msa1425840:intron | 35.0% |
| !! | AAGCACGTAGTTCATTTTTG+GGG | - | tig0025900:225-244 | Msa1425840:intron | 35.0% |
| ! | AGGGAAAGCTTTAACAAATG+TGG | - | tig0025900:257-276 | Msa1425840:intron | 35.0% |
| AAATCTACTACTATCACCAC+TGG | + | tig0025900:375-394 | Msa1425840:intergenic | 35.0% | |
| CTGAGCAATCATATTTATGG+TGG | + | tig0025900:402-421 | Msa1425840:intergenic | 35.0% | |
| CACCATAAATATGATTGCTC+AGG | - | tig0025900:400-419 | Msa1425840:intron | 35.0% | |
| TGCCTGAGCAATCATATTTA+TGG | + | tig0025900:405-424 | Msa1425840:intergenic | 35.0% | |
| !! | AAGGTTTTGTCTTATTAGCG+AGG | - | tig0025900:609-628 | Msa1425840:intron | 35.0% |
| !! | AGGTTTTGTCTTATTAGCGA+GGG | - | tig0025900:610-629 | Msa1425840:intron | 35.0% |
| GGTCCAAAATAATCTGCAAA+CGG | + | tig0025900:680-699 | Msa1425840:intergenic | 35.0% | |
| AGGTCCTGCTTTCATAAAAT+GGG | - | tig0025900:751-770 | Msa1425840:intron | 35.0% | |
| TTTCATAAAATGGGGTCAGT+GGG | - | tig0025900:760-779 | Msa1425840:intron | 35.0% | |
| AATCTTAACCACTTAAGAGC+GGG | + | tig0025900:1120-1139 | Msa1425840:intergenic | 35.0% | |
| TCATTTATAATTTCCGCAGC+TGG | - | tig0025900:1220-1239 | Msa1425840:CDS | 35.0% | |
| ! | ATGTTTCTACCAATACAGCA+GGG | + | tig0025900:1287-1306 | Msa1425840:intergenic | 35.0% |
| ! | TATGTTTCTACCAATACAGC+AGG | + | tig0025900:1288-1307 | Msa1425840:intergenic | 35.0% |
| !!! | CGTTATGTTGATGGTTTTCA+AGG | - | tig0025900:1329-1348 | Msa1425840:CDS | 35.0% |
| AAATCTGCTCTTGCTCATAT+TGG | - | tig0025900:1365-1384 | Msa1425840:CDS | 35.0% | |
| AATCTGCTCTTGCTCATATT+GGG | - | tig0025900:1366-1385 | Msa1425840:CDS | 35.0% | |
| !!! | AGTTTTGGATAGAGTCCTTT+TGG | - | tig0025900:1462-1481 | Msa1425840:CDS | 35.0% |
| !!! | GCACTTGTCATTTTTCCAAA+TGG | + | tig0025900:1638-1657 | Msa1425840:intergenic | 35.0% |
| CTGAGATTGTTTAAGTAGCA+TGG | - | tig0025900:1661-1680 | Msa1425840:intron | 35.0% | |
| ACACATAGATATGCATGATC+AGG | - | tig0025900:1718-1737 | Msa1425840:intron | 35.0% | |
| !!! | AGCCAGAGTCTGTTTTAAAA+AGG | + | tig0025900:1876-1895 | Msa1425840:intergenic | 35.0% |
| TTGTGTGCAACTGAAACTAT+AGG | - | tig0025900:1925-1944 | Msa1425840:CDS | 35.0% | |
| TGTGTGCAACTGAAACTATA+GGG | - | tig0025900:1926-1945 | Msa1425840:CDS | 35.0% | |
| !! | AGCTTTCCTTTTTAAGGGTA+TGG | - | tig0025900:2054-2073 | Msa1425840:CDS | 35.0% |
| !! | ATTTAAGTTGCAACTGCCAA+TGG | - | tig0025900:2103-2122 | Msa1425840:CDS | 35.0% |
| !! | TTTAAGTTGCAACTGCCAAT+GGG | - | tig0025900:2104-2123 | Msa1425840:CDS | 35.0% |
| ! | ACCATGCAATGTTTTCTTTC+AGG | - | tig0025900:2281-2300 | Msa1425840:CDS | 35.0% |
| ACCTGAAAGAAAACATTGCA+TGG | + | tig0025900:2285-2304 | Msa1425840:intergenic | 35.0% | |
| ! | ATGCAATGTTTTCTTTCAGG+TGG | - | tig0025900:2284-2303 | Msa1425840:CDS | 35.0% |
| ATCCTGGGAATATTCTTGTT+CGG | - | tig0025900:2331-2350 | Msa1425840:CDS | 35.0% | |
| AATAAATAGAGGCAGATACG+TGG | - | tig0025900:118-137 | Msa1425840:CDS | 35.0% | |
| ! | TGAAGCACGTAGTTCATTTT+TGG | - | tig0025900:223-242 | Msa1425840:intron | 35.0% |
| !! | GAAGCACGTAGTTCATTTTT+GGG | - | tig0025900:224-243 | Msa1425840:intron | 35.0% |
| !! | AAGCACGTAGTTCATTTTTG+GGG | - | tig0025900:225-244 | Msa1425840:intron | 35.0% |
| ! | AGGGAAAGCTTTAACAAATG+TGG | - | tig0025900:257-276 | Msa1425840:intron | 35.0% |
| AAATCTACTACTATCACCAC+TGG | + | tig0025900:375-394 | Msa1425840:intergenic | 35.0% | |
| CTGAGCAATCATATTTATGG+TGG | + | tig0025900:402-421 | Msa1425840:intergenic | 35.0% | |
| CACCATAAATATGATTGCTC+AGG | - | tig0025900:400-419 | Msa1425840:intron | 35.0% | |
| TGCCTGAGCAATCATATTTA+TGG | + | tig0025900:405-424 | Msa1425840:intergenic | 35.0% | |
| !! | AAGGTTTTGTCTTATTAGCG+AGG | - | tig0025900:609-628 | Msa1425840:intron | 35.0% |
| !! | AGGTTTTGTCTTATTAGCGA+GGG | - | tig0025900:610-629 | Msa1425840:intron | 35.0% |
| GGTCCAAAATAATCTGCAAA+CGG | + | tig0025900:680-699 | Msa1425840:intergenic | 35.0% | |
| AGGTCCTGCTTTCATAAAAT+GGG | - | tig0025900:751-770 | Msa1425840:intron | 35.0% | |
| TTTCATAAAATGGGGTCAGT+GGG | - | tig0025900:760-779 | Msa1425840:intron | 35.0% | |
| AATCTTAACCACTTAAGAGC+GGG | + | tig0025900:1120-1139 | Msa1425840:intergenic | 35.0% | |
| TCATTTATAATTTCCGCAGC+TGG | - | tig0025900:1220-1239 | Msa1425840:CDS | 35.0% | |
| ! | ATGTTTCTACCAATACAGCA+GGG | + | tig0025900:1287-1306 | Msa1425840:intergenic | 35.0% |
| ! | TATGTTTCTACCAATACAGC+AGG | + | tig0025900:1288-1307 | Msa1425840:intergenic | 35.0% |
| !!! | CGTTATGTTGATGGTTTTCA+AGG | - | tig0025900:1329-1348 | Msa1425840:CDS | 35.0% |
| AAATCTGCTCTTGCTCATAT+TGG | - | tig0025900:1365-1384 | Msa1425840:CDS | 35.0% | |
| AATCTGCTCTTGCTCATATT+GGG | - | tig0025900:1366-1385 | Msa1425840:CDS | 35.0% | |
| !!! | AGTTTTGGATAGAGTCCTTT+TGG | - | tig0025900:1462-1481 | Msa1425840:CDS | 35.0% |
| !!! | GCACTTGTCATTTTTCCAAA+TGG | + | tig0025900:1638-1657 | Msa1425840:intergenic | 35.0% |
| CTGAGATTGTTTAAGTAGCA+TGG | - | tig0025900:1661-1680 | Msa1425840:intron | 35.0% | |
| ACACATAGATATGCATGATC+AGG | - | tig0025900:1718-1737 | Msa1425840:intron | 35.0% | |
| !!! | AGCCAGAGTCTGTTTTAAAA+AGG | + | tig0025900:1876-1895 | Msa1425840:intergenic | 35.0% |
| TTGTGTGCAACTGAAACTAT+AGG | - | tig0025900:1925-1944 | Msa1425840:CDS | 35.0% | |
| TGTGTGCAACTGAAACTATA+GGG | - | tig0025900:1926-1945 | Msa1425840:CDS | 35.0% | |
| !! | AGCTTTCCTTTTTAAGGGTA+TGG | - | tig0025900:2054-2073 | Msa1425840:CDS | 35.0% |
| !! | ATTTAAGTTGCAACTGCCAA+TGG | - | tig0025900:2103-2122 | Msa1425840:CDS | 35.0% |
| !! | TTTAAGTTGCAACTGCCAAT+GGG | - | tig0025900:2104-2123 | Msa1425840:CDS | 35.0% |
| ! | ACCATGCAATGTTTTCTTTC+AGG | - | tig0025900:2281-2300 | Msa1425840:CDS | 35.0% |
| ACCTGAAAGAAAACATTGCA+TGG | + | tig0025900:2285-2304 | Msa1425840:intergenic | 35.0% | |
| ! | ATGCAATGTTTTCTTTCAGG+TGG | - | tig0025900:2284-2303 | Msa1425840:CDS | 35.0% |
| ATCCTGGGAATATTCTTGTT+CGG | - | tig0025900:2331-2350 | Msa1425840:CDS | 35.0% | |
| TACGTGGAAGTGAGTAGAAA+TGG | - | tig0025900:134-153 | Msa1425840:CDS | 40.0% | |
| ACGTGGAAGTGAGTAGAAAT+GGG | - | tig0025900:135-154 | Msa1425840:CDS | 40.0% | |
| ACTTATACGGCATGTAGAAC+CGG | + | tig0025900:196-215 | Msa1425840:intergenic | 40.0% | |
| !!! | ATTTTTGGGGCTTGCAACAA+GGG | - | tig0025900:238-257 | Msa1425840:intron | 40.0% |
| ! | TTTTCCACGCAATCTGAGAA+TGG | + | tig0025900:331-350 | Msa1425840:intergenic | 40.0% |
| ATTCTCAGATTGCGTGGAAA+AGG | - | tig0025900:330-349 | Msa1425840:intron | 40.0% | |
| !! | TACAGAAAGTACTGTTCCAG+TGG | - | tig0025900:356-375 | Msa1425840:intron | 40.0% |
| ! | TTTGACTCGCTCTTATTTGC+TGG | - | tig0025900:436-455 | Msa1425840:intron | 40.0% |
| TATACAATCCTTCCTGTGGT+TGG | + | tig0025900:535-554 | Msa1425840:intergenic | 40.0% | |
| ATTCACTCCAACCATTGTGA+TGG | - | tig0025900:652-671 | Msa1425840:intron | 40.0% | |
| TTCACTCCAACCATTGTGAT+GGG | - | tig0025900:653-672 | Msa1425840:intron | 40.0% | |
| ! | GGACCGTTTGCAGATTATTT+TGG | - | tig0025900:674-693 | Msa1425840:intron | 40.0% |
| CATCGAACACTAGAAAAAGC+AGG | - | tig0025900:731-750 | Msa1425840:intron | 40.0% | |
| CAGGTCCTGCTTTCATAAAA+TGG | - | tig0025900:750-769 | Msa1425840:intron | 40.0% | |
| GGTCCTGCTTTCATAAAATG+GGG | - | tig0025900:752-771 | Msa1425840:intron | 40.0% | |
| ! | TGACCCCATTTTATGAAAGC+AGG | + | tig0025900:758-777 | Msa1425840:intergenic | 40.0% |
| CTTTCATAAAATGGGGTCAG+TGG | - | tig0025900:759-778 | Msa1425840:intron | 40.0% | |
| TAGATCTCGAGGAAAAGATC+AGG | + | tig0025900:797-816 | Msa1425840:intergenic | 40.0% | |
| !! | AGTGGTTTTGCTTGTTTACC+AGG | + | tig0025900:1000-1019 | Msa1425840:intergenic | 40.0% |
| TGGTAAACAAGCAAAACCAC+TGG | - | tig0025900:999-1018 | Msa1425840:intron | 40.0% | |
| TAAACAAGCAAAACCACTGG+TGG | - | tig0025900:1002-1021 | Msa1425840:intron | 40.0% | |
| TGTGGGAGAATCAATCAGAA+GGG | - | tig0025900:1050-1069 | Msa1425840:intron | 40.0% | |
| TTATAATTTCCGCAGCTGGA+AGG | - | tig0025900:1224-1243 | Msa1425840:CDS | 40.0% | |
| AGTGTCTCACGTTATGTTGA+TGG | - | tig0025900:1320-1339 | Msa1425840:CDS | 40.0% | |
| !! | TGCACTTTTGAAGATGCTTC+TGG | - | tig0025900:1394-1413 | Msa1425840:CDS | 40.0% |
| CTGAAACTATAGGGTGGTAT+AGG | - | tig0025900:1935-1954 | Msa1425840:CDS | 40.0% | |
| CTGGATCCATACCCTTAAAA+AGG | + | tig0025900:2063-2082 | Msa1425840:intergenic | 40.0% | |
| ATTCATGCAGATATGCATCC+TGG | - | tig0025900:2315-2334 | Msa1425840:CDS | 40.0% | |
| TTCATGCAGATATGCATCCT+GGG | - | tig0025900:2316-2335 | Msa1425840:CDS | 40.0% | |
| TCCTGGGAATATTCTTGTTC+GGG | - | tig0025900:2332-2351 | Msa1425840:CDS | 40.0% | |
| TACGTGGAAGTGAGTAGAAA+TGG | - | tig0025900:134-153 | Msa1425840:CDS | 40.0% | |
| ACGTGGAAGTGAGTAGAAAT+GGG | - | tig0025900:135-154 | Msa1425840:CDS | 40.0% | |
| ACTTATACGGCATGTAGAAC+CGG | + | tig0025900:196-215 | Msa1425840:intergenic | 40.0% | |
| !!! | ATTTTTGGGGCTTGCAACAA+GGG | - | tig0025900:238-257 | Msa1425840:intron | 40.0% |
| ! | TTTTCCACGCAATCTGAGAA+TGG | + | tig0025900:331-350 | Msa1425840:intergenic | 40.0% |
| ATTCTCAGATTGCGTGGAAA+AGG | - | tig0025900:330-349 | Msa1425840:intron | 40.0% | |
| !! | TACAGAAAGTACTGTTCCAG+TGG | - | tig0025900:356-375 | Msa1425840:intron | 40.0% |
| ! | TTTGACTCGCTCTTATTTGC+TGG | - | tig0025900:436-455 | Msa1425840:intron | 40.0% |
| TATACAATCCTTCCTGTGGT+TGG | + | tig0025900:535-554 | Msa1425840:intergenic | 40.0% | |
| ATTCACTCCAACCATTGTGA+TGG | - | tig0025900:652-671 | Msa1425840:intron | 40.0% | |
| TTCACTCCAACCATTGTGAT+GGG | - | tig0025900:653-672 | Msa1425840:intron | 40.0% | |
| ! | GGACCGTTTGCAGATTATTT+TGG | - | tig0025900:674-693 | Msa1425840:intron | 40.0% |
| CATCGAACACTAGAAAAAGC+AGG | - | tig0025900:731-750 | Msa1425840:intron | 40.0% | |
| CAGGTCCTGCTTTCATAAAA+TGG | - | tig0025900:750-769 | Msa1425840:intron | 40.0% | |
| GGTCCTGCTTTCATAAAATG+GGG | - | tig0025900:752-771 | Msa1425840:intron | 40.0% | |
| ! | TGACCCCATTTTATGAAAGC+AGG | + | tig0025900:758-777 | Msa1425840:intergenic | 40.0% |
| CTTTCATAAAATGGGGTCAG+TGG | - | tig0025900:759-778 | Msa1425840:intron | 40.0% | |
| TAGATCTCGAGGAAAAGATC+AGG | + | tig0025900:797-816 | Msa1425840:intergenic | 40.0% | |
| !! | AGTGGTTTTGCTTGTTTACC+AGG | + | tig0025900:1000-1019 | Msa1425840:intergenic | 40.0% |
| TGGTAAACAAGCAAAACCAC+TGG | - | tig0025900:999-1018 | Msa1425840:intron | 40.0% | |
| TAAACAAGCAAAACCACTGG+TGG | - | tig0025900:1002-1021 | Msa1425840:intron | 40.0% | |
| TGTGGGAGAATCAATCAGAA+GGG | - | tig0025900:1050-1069 | Msa1425840:intron | 40.0% | |
| TTATAATTTCCGCAGCTGGA+AGG | - | tig0025900:1224-1243 | Msa1425840:CDS | 40.0% | |
| AGTGTCTCACGTTATGTTGA+TGG | - | tig0025900:1320-1339 | Msa1425840:CDS | 40.0% | |
| !! | TGCACTTTTGAAGATGCTTC+TGG | - | tig0025900:1394-1413 | Msa1425840:CDS | 40.0% |
| CTGAAACTATAGGGTGGTAT+AGG | - | tig0025900:1935-1954 | Msa1425840:CDS | 40.0% | |
| CTGGATCCATACCCTTAAAA+AGG | + | tig0025900:2063-2082 | Msa1425840:intergenic | 40.0% | |
| ATTCATGCAGATATGCATCC+TGG | - | tig0025900:2315-2334 | Msa1425840:CDS | 40.0% | |
| TTCATGCAGATATGCATCCT+GGG | - | tig0025900:2316-2335 | Msa1425840:CDS | 40.0% | |
| TCCTGGGAATATTCTTGTTC+GGG | - | tig0025900:2332-2351 | Msa1425840:CDS | 40.0% | |
| TAGAAATGGGCCAATTGTCC+CGG | - | tig0025900:148-167 | Msa1425840:intron | 45.0% | |
| !!! | CATTTTTGGGGCTTGCAACA+AGG | - | tig0025900:237-256 | Msa1425840:intron | 45.0% |
| CGCATATACAATCCTTCCTG+TGG | + | tig0025900:539-558 | Msa1425840:intergenic | 45.0% | |
| TTGTATATGCGTGCCCAAGA+TGG | - | tig0025900:548-567 | Msa1425840:intron | 45.0% | |
| TGTATATGCGTGCCCAAGAT+GGG | - | tig0025900:549-568 | Msa1425840:intron | 45.0% | |
| CTAGTGTTCGATGAACAACG+CGG | + | tig0025900:724-743 | Msa1425840:intergenic | 45.0% | |
| GTGTAGCTGAAACTATGCTC+AGG | + | tig0025900:853-872 | Msa1425840:intergenic | 45.0% | |
| GAAGAGATTCCTGTTGCATC+TGG | - | tig0025900:931-950 | Msa1425840:intron | 45.0% | |
| TAATGTAGCACGGTGCACTT+GGG | + | tig0025900:965-984 | Msa1425840:intergenic | 45.0% | |
| TTAATGTAGCACGGTGCACT+TGG | + | tig0025900:966-985 | Msa1425840:intergenic | 45.0% | |
| ACCAGGATGTCTAACCTTCA+CGG | + | tig0025900:1031-1050 | Msa1425840:intergenic | 45.0% | |
| AAGGTTAGACATCCTGGTGT+GGG | - | tig0025900:1033-1052 | Msa1425840:intron | 45.0% | |
| GTGTGGGAGAATCAATCAGA+AGG | - | tig0025900:1049-1068 | Msa1425840:intron | 45.0% | |
| CTTAAGAGCGGGAATGAACA+TGG | + | tig0025900:1109-1128 | Msa1425840:intergenic | 45.0% | |
| TGTTCATTCCCGCTCTTAAG+TGG | - | tig0025900:1109-1128 | Msa1425840:intron | 45.0% | |
| TTCCCTAGCAAGGTCAACTT+GGG | + | tig0025900:1181-1200 | Msa1425840:intergenic | 45.0% | |
| AAGAAACATCCTTCCAGCTG+CGG | + | tig0025900:1236-1255 | Msa1425840:intergenic | 45.0% | |
| CAAGTGGATAGACAGGCTTA+GGG | + | tig0025900:1260-1279 | Msa1425840:intergenic | 45.0% | |
| ACAAGTGGATAGACAGGCTT+AGG | + | tig0025900:1261-1280 | Msa1425840:intergenic | 45.0% | |
| GCTCTTCGTTGGGATTAGAA+AGG | - | tig0025900:1899-1918 | Msa1425840:CDS | 45.0% | |
| GTGCAACTGAAACTATAGGG+TGG | - | tig0025900:1929-1948 | Msa1425840:CDS | 45.0% | |
| ! | TTTAAGGGTATGGATCCAGC+TGG | - | tig0025900:2064-2083 | Msa1425840:CDS | 45.0% |
| ! | TCACTCTCTAAAAGTCCAGC+TGG | + | tig0025900:2082-2101 | Msa1425840:intergenic | 45.0% |
| CCTGGGAATATTCTTGTTCG+GGG | - | tig0025900:2333-2352 | Msa1425840:CDS | 45.0% | |
| TAGAAATGGGCCAATTGTCC+CGG | - | tig0025900:148-167 | Msa1425840:intron | 45.0% | |
| !!! | CATTTTTGGGGCTTGCAACA+AGG | - | tig0025900:237-256 | Msa1425840:intron | 45.0% |
| CGCATATACAATCCTTCCTG+TGG | + | tig0025900:539-558 | Msa1425840:intergenic | 45.0% | |
| TTGTATATGCGTGCCCAAGA+TGG | - | tig0025900:548-567 | Msa1425840:intron | 45.0% | |
| TGTATATGCGTGCCCAAGAT+GGG | - | tig0025900:549-568 | Msa1425840:intron | 45.0% | |
| CTAGTGTTCGATGAACAACG+CGG | + | tig0025900:724-743 | Msa1425840:intergenic | 45.0% | |
| GTGTAGCTGAAACTATGCTC+AGG | + | tig0025900:853-872 | Msa1425840:intergenic | 45.0% | |
| GAAGAGATTCCTGTTGCATC+TGG | - | tig0025900:931-950 | Msa1425840:intron | 45.0% | |
| TAATGTAGCACGGTGCACTT+GGG | + | tig0025900:965-984 | Msa1425840:intergenic | 45.0% | |
| TTAATGTAGCACGGTGCACT+TGG | + | tig0025900:966-985 | Msa1425840:intergenic | 45.0% | |
| ACCAGGATGTCTAACCTTCA+CGG | + | tig0025900:1031-1050 | Msa1425840:intergenic | 45.0% | |
| AAGGTTAGACATCCTGGTGT+GGG | - | tig0025900:1033-1052 | Msa1425840:intron | 45.0% | |
| GTGTGGGAGAATCAATCAGA+AGG | - | tig0025900:1049-1068 | Msa1425840:intron | 45.0% | |
| CTTAAGAGCGGGAATGAACA+TGG | + | tig0025900:1109-1128 | Msa1425840:intergenic | 45.0% | |
| TGTTCATTCCCGCTCTTAAG+TGG | - | tig0025900:1109-1128 | Msa1425840:intron | 45.0% | |
| TTCCCTAGCAAGGTCAACTT+GGG | + | tig0025900:1181-1200 | Msa1425840:intergenic | 45.0% | |
| AAGAAACATCCTTCCAGCTG+CGG | + | tig0025900:1236-1255 | Msa1425840:intergenic | 45.0% | |
| CAAGTGGATAGACAGGCTTA+GGG | + | tig0025900:1260-1279 | Msa1425840:intergenic | 45.0% | |
| ACAAGTGGATAGACAGGCTT+AGG | + | tig0025900:1261-1280 | Msa1425840:intergenic | 45.0% | |
| GCTCTTCGTTGGGATTAGAA+AGG | - | tig0025900:1899-1918 | Msa1425840:CDS | 45.0% | |
| GTGCAACTGAAACTATAGGG+TGG | - | tig0025900:1929-1948 | Msa1425840:CDS | 45.0% | |
| ! | TTTAAGGGTATGGATCCAGC+TGG | - | tig0025900:2064-2083 | Msa1425840:CDS | 45.0% |
| ! | TCACTCTCTAAAAGTCCAGC+TGG | + | tig0025900:2082-2101 | Msa1425840:intergenic | 45.0% |
| CCTGGGAATATTCTTGTTCG+GGG | - | tig0025900:2333-2352 | Msa1425840:CDS | 45.0% | |
| TTTGGTCCAACCGGGACAAT+TGG | + | tig0025900:161-180 | Msa1425840:intergenic | 50.0% | |
| ! | TGGTGGGTATTTGGTCCAAC+CGG | + | tig0025900:170-189 | Msa1425840:intergenic | 50.0% |
| CACACCATTCTCAGATTGCG+TGG | - | tig0025900:324-343 | Msa1425840:intron | 50.0% | |
| ! | CGCTCTTATTTGCTGGTACC+TGG | - | tig0025900:443-462 | Msa1425840:intron | 50.0% |
| TTGCATTCTCCCAGCGAAGT+TGG | - | tig0025900:492-511 | Msa1425840:intron | 50.0% | |
| TGCATTCTCCCAGCGAAGTT+GGG | - | tig0025900:493-512 | Msa1425840:intron | 50.0% | |
| TGCAGAACGTTTCCAACCAC+AGG | - | tig0025900:520-539 | Msa1425840:intron | 50.0% | |
| GAACGTTTCCAACCACAGGA+AGG | - | tig0025900:524-543 | Msa1425840:intron | 50.0% | |
| AACGGTCCCATCACAATGGT+TGG | + | tig0025900:662-681 | Msa1425840:intergenic | 50.0% | |
| TGCAAACGGTCCCATCACAA+TGG | + | tig0025900:666-685 | Msa1425840:intergenic | 50.0% | |
| AGCTGAGTGCATAGATCTCG+AGG | + | tig0025900:808-827 | Msa1425840:intergenic | 50.0% | |
| GCAATGCTTCCAGATGCAAC+AGG | + | tig0025900:943-962 | Msa1425840:intergenic | 50.0% | |
| GAAGGTTAGACATCCTGGTG+TGG | - | tig0025900:1032-1051 | Msa1425840:intron | 50.0% | |
| ! | CTGATTGATTCTCCCACACC+AGG | + | tig0025900:1048-1067 | Msa1425840:intergenic | 50.0% |
| ! | TGTCCCAAGTTGACCTTGCT+AGG | - | tig0025900:1175-1194 | Msa1425840:CDS | 50.0% |
| ! | GTCCCAAGTTGACCTTGCTA+GGG | - | tig0025900:1176-1195 | Msa1425840:CDS | 50.0% |
| CTTCCCTAGCAAGGTCAACT+TGG | + | tig0025900:1182-1201 | Msa1425840:intergenic | 50.0% | |
| AATACAGCAGGGTGCACAAG+TGG | + | tig0025900:1276-1295 | Msa1425840:intergenic | 50.0% | |
| ACTTGTGCACCCTGCTGTAT+TGG | - | tig0025900:1275-1294 | Msa1425840:CDS | 50.0% | |
| CCCCGAACAAGAATATTCCC+AGG | + | tig0025900:2336-2355 | Msa1425840:intergenic | 50.0% | |
| TTTGGTCCAACCGGGACAAT+TGG | + | tig0025900:161-180 | Msa1425840:intergenic | 50.0% | |
| ! | TGGTGGGTATTTGGTCCAAC+CGG | + | tig0025900:170-189 | Msa1425840:intergenic | 50.0% |
| CACACCATTCTCAGATTGCG+TGG | - | tig0025900:324-343 | Msa1425840:intron | 50.0% | |
| ! | CGCTCTTATTTGCTGGTACC+TGG | - | tig0025900:443-462 | Msa1425840:intron | 50.0% |
| TTGCATTCTCCCAGCGAAGT+TGG | - | tig0025900:492-511 | Msa1425840:intron | 50.0% | |
| TGCATTCTCCCAGCGAAGTT+GGG | - | tig0025900:493-512 | Msa1425840:intron | 50.0% | |
| TGCAGAACGTTTCCAACCAC+AGG | - | tig0025900:520-539 | Msa1425840:intron | 50.0% | |
| GAACGTTTCCAACCACAGGA+AGG | - | tig0025900:524-543 | Msa1425840:intron | 50.0% | |
| AACGGTCCCATCACAATGGT+TGG | + | tig0025900:662-681 | Msa1425840:intergenic | 50.0% | |
| TGCAAACGGTCCCATCACAA+TGG | + | tig0025900:666-685 | Msa1425840:intergenic | 50.0% | |
| AGCTGAGTGCATAGATCTCG+AGG | + | tig0025900:808-827 | Msa1425840:intergenic | 50.0% | |
| GCAATGCTTCCAGATGCAAC+AGG | + | tig0025900:943-962 | Msa1425840:intergenic | 50.0% | |
| GAAGGTTAGACATCCTGGTG+TGG | - | tig0025900:1032-1051 | Msa1425840:intron | 50.0% | |
| ! | CTGATTGATTCTCCCACACC+AGG | + | tig0025900:1048-1067 | Msa1425840:intergenic | 50.0% |
| ! | TGTCCCAAGTTGACCTTGCT+AGG | - | tig0025900:1175-1194 | Msa1425840:CDS | 50.0% |
| ! | GTCCCAAGTTGACCTTGCTA+GGG | - | tig0025900:1176-1195 | Msa1425840:CDS | 50.0% |
| CTTCCCTAGCAAGGTCAACT+TGG | + | tig0025900:1182-1201 | Msa1425840:intergenic | 50.0% | |
| AATACAGCAGGGTGCACAAG+TGG | + | tig0025900:1276-1295 | Msa1425840:intergenic | 50.0% | |
| ACTTGTGCACCCTGCTGTAT+TGG | - | tig0025900:1275-1294 | Msa1425840:CDS | 50.0% | |
| CCCCGAACAAGAATATTCCC+AGG | + | tig0025900:2336-2355 | Msa1425840:intergenic | 50.0% | |
| AATGGGCCAATTGTCCCGGT+TGG | - | tig0025900:152-171 | Msa1425840:intron | 55.0% | |
| GGTGGGTATTTGGTCCAACC+GGG | + | tig0025900:169-188 | Msa1425840:intergenic | 55.0% | |
| GACCAAATACCCACCACTGC+CGG | - | tig0025900:174-193 | Msa1425840:intron | 55.0% | |
| !! | AACCGGCAGTGGTGGGTATT+TGG | + | tig0025900:179-198 | Msa1425840:intergenic | 55.0% |
| CATGTAGAACCGGCAGTGGT+GGG | + | tig0025900:186-205 | Msa1425840:intergenic | 55.0% | |
| GATTGCTCAGGCAGTGAGCT+TGG | - | tig0025900:412-431 | Msa1425840:intron | 55.0% | |
| GCATTCTCCCAGCGAAGTTG+GGG | - | tig0025900:494-513 | Msa1425840:intron | 55.0% | |
| TGCATCTCCCCAACTTCGCT+GGG | + | tig0025900:504-523 | Msa1425840:intergenic | 55.0% | |
| GAAAAGATCAGGCCGCGTAG+CGG | + | tig0025900:786-805 | Msa1425840:intergenic | 55.0% | |
| GCCGTGAAGGTTAGACATCC+TGG | - | tig0025900:1027-1046 | Msa1425840:intron | 55.0% | |
| AATGGGCAGCTTCCCTAGCA+AGG | + | tig0025900:1191-1210 | Msa1425840:intergenic | 55.0% | |
| GGGTGCACAAGTGGATAGAC+AGG | + | tig0025900:1267-1286 | Msa1425840:intergenic | 55.0% | |
| TCTGGCTGTCGCTCTTCGTT+GGG | - | tig0025900:1889-1908 | Msa1425840:CDS | 55.0% | |
| AATGGGCCAATTGTCCCGGT+TGG | - | tig0025900:152-171 | Msa1425840:intron | 55.0% | |
| GGTGGGTATTTGGTCCAACC+GGG | + | tig0025900:169-188 | Msa1425840:intergenic | 55.0% | |
| GACCAAATACCCACCACTGC+CGG | - | tig0025900:174-193 | Msa1425840:intron | 55.0% | |
| !! | AACCGGCAGTGGTGGGTATT+TGG | + | tig0025900:179-198 | Msa1425840:intergenic | 55.0% |
| CATGTAGAACCGGCAGTGGT+GGG | + | tig0025900:186-205 | Msa1425840:intergenic | 55.0% | |
| GATTGCTCAGGCAGTGAGCT+TGG | - | tig0025900:412-431 | Msa1425840:intron | 55.0% | |
| GCATTCTCCCAGCGAAGTTG+GGG | - | tig0025900:494-513 | Msa1425840:intron | 55.0% | |
| TGCATCTCCCCAACTTCGCT+GGG | + | tig0025900:504-523 | Msa1425840:intergenic | 55.0% | |
| GAAAAGATCAGGCCGCGTAG+CGG | + | tig0025900:786-805 | Msa1425840:intergenic | 55.0% | |
| GCCGTGAAGGTTAGACATCC+TGG | - | tig0025900:1027-1046 | Msa1425840:intron | 55.0% | |
| AATGGGCAGCTTCCCTAGCA+AGG | + | tig0025900:1191-1210 | Msa1425840:intergenic | 55.0% | |
| GGGTGCACAAGTGGATAGAC+AGG | + | tig0025900:1267-1286 | Msa1425840:intergenic | 55.0% | |
| TCTGGCTGTCGCTCTTCGTT+GGG | - | tig0025900:1889-1908 | Msa1425840:CDS | 55.0% | |
| GCATGTAGAACCGGCAGTGG+TGG | + | tig0025900:187-206 | Msa1425840:intergenic | 60.0% | |
| ACGGCATGTAGAACCGGCAG+TGG | + | tig0025900:190-209 | Msa1425840:intergenic | 60.0% | |
| CTGCATCTCCCCAACTTCGC+TGG | + | tig0025900:505-524 | Msa1425840:intergenic | 60.0% | |
| ACCACTGGTGGTTGCCGTGA+AGG | - | tig0025900:1014-1033 | Msa1425840:intron | 60.0% | |
| ACCTTCACGGCAACCACCAG+TGG | + | tig0025900:1018-1037 | Msa1425840:intergenic | 60.0% | |
| CTCTGGCTGTCGCTCTTCGT+TGG | - | tig0025900:1888-1907 | Msa1425840:CDS | 60.0% | |
| GCATGTAGAACCGGCAGTGG+TGG | + | tig0025900:187-206 | Msa1425840:intergenic | 60.0% | |
| ACGGCATGTAGAACCGGCAG+TGG | + | tig0025900:190-209 | Msa1425840:intergenic | 60.0% | |
| CTGCATCTCCCCAACTTCGC+TGG | + | tig0025900:505-524 | Msa1425840:intergenic | 60.0% | |
| ACCACTGGTGGTTGCCGTGA+AGG | - | tig0025900:1014-1033 | Msa1425840:intron | 60.0% | |
| ACCTTCACGGCAACCACCAG+TGG | + | tig0025900:1018-1037 | Msa1425840:intergenic | 60.0% | |
| CTCTGGCTGTCGCTCTTCGT+TGG | - | tig0025900:1888-1907 | Msa1425840:CDS | 60.0% | |
| GGGGTCAGTGGGCCGCTACG+CGG | - | tig0025900:771-790 | Msa1425840:intron | 75.0% | |
| GGGGTCAGTGGGCCGCTACG+CGG | - | tig0025900:771-790 | Msa1425840:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025900 | gene | 77 | 2389 | 77 | ID=Msa1425840;Name=Msa1425840 |
| tig0025900 | mRNA | 77 | 2389 | 77 | ID=Msa1425840-mRNA-1;Parent=Msa1425840;Name=Msa1425840-mRNA-1;_AED=0.13;_eAED=0.15;_QI=0|0|0|1|1|1|3|0|418 |
| tig0025900 | exon | 1739 | 2389 | 1739 | ID=Msa1425840-mRNA-1:exon:4509;Parent=Msa1425840-mRNA-1 |
| tig0025900 | exon | 1125 | 1640 | 1125 | ID=Msa1425840-mRNA-1:exon:4508;Parent=Msa1425840-mRNA-1 |
| tig0025900 | exon | 77 | 163 | 77 | ID=Msa1425840-mRNA-1:exon:4507;Parent=Msa1425840-mRNA-1 |
| tig0025900 | CDS | 1739 | 2389 | 1739 | ID=Msa1425840-mRNA-1:cds;Parent=Msa1425840-mRNA-1 |
| tig0025900 | CDS | 1125 | 1640 | 1125 | ID=Msa1425840-mRNA-1:cds;Parent=Msa1425840-mRNA-1 |
| tig0025900 | CDS | 77 | 163 | 77 | ID=Msa1425840-mRNA-1:cds;Parent=Msa1425840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
