AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191960 MtrunA17_Chr2g0281881 98.015 655 13 0 1 655 1 655 0.0 1328
Msa0191960 MtrunA17_Chr3g0132201 80.892 628 114 3 31 655 27 651 0.0 1067
Msa0191960 MtrunA17_Chr2g0290681 73.520 608 156 2 27 633 10 613 0.0 946
Msa0191960 MtrunA17_Chr6g0449041 24.644 491 330 11 84 550 6 480 5.96e-35 140
Msa0191960 MtrunA17_Chr5g0420011 22.325 542 377 17 52 574 19 535 1.69e-15 80.1
Msa0191960 MtrunA17_Chr4g0007071 22.202 545 374 17 52 574 19 535 1.88e-15 80.1
Msa0191960 MtrunA17_Chr2g0283471 21.942 515 340 17 88 572 26 508 4.87e-14 75.5
Msa0191960 MtrunA17_Chr7g0242961 22.656 512 344 16 88 574 47 531 3.92e-13 72.4
Msa0191960 MtrunA17_Chr7g0242981 23.034 534 345 18 63 574 28 517 4.81e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191960 AT3G48560.1 83.788 586 95 0 70 655 85 670 0.0 1046
Msa0191960 AT5G17380.1 27.328 494 309 12 84 550 14 484 8.58e-47 174
Msa0191960 AT5G01330.1 24.237 524 321 17 88 574 36 520 8.05e-20 94.4
Msa0191960 AT5G01320.1 22.562 523 331 15 88 574 47 531 1.23e-17 87.4
Msa0191960 AT4G33070.1 22.328 524 331 15 88 574 51 535 1.95e-16 83.6
Msa0191960 AT5G54960.1 21.782 505 353 14 88 572 51 533 1.29e-15 80.9

Find 215 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGGGATCAATCGAATTT+TGG 0.232600 2_1:+7689444 Msa0191960:CDS
CCCAATATGTTGAAGTTTGC+AGG 0.240705 2_1:+7689982 Msa0191960:CDS
GATCAACCTATTAGGTTAAC+TGG 0.252439 2_1:+7688989 Msa0191960:CDS
AATATTTCTTTCTCATTGGC+TGG 0.252481 2_1:-7689958 None:intergenic
TTGAGCTTGAAGGGAGTGTT+TGG 0.263351 2_1:-7688347 None:intergenic
TTCAACAACAATATCTTAAC+AGG 0.266547 2_1:-7689856 None:intergenic
GTGTTTGGGGAAGTGGAAAA+TGG 0.269439 2_1:-7688332 None:intergenic
CGCTATGGGATTTGGATTGC+CGG 0.275397 2_1:+7689720 Msa0191960:CDS
ACCTGCAAACTTCAACATAT+TGG 0.275568 2_1:-7689983 None:intergenic
CGAATTGGGATCAACCTATT+AGG 0.276452 2_1:+7688981 Msa0191960:CDS
ACAGATTGTGAGGTTGTTAT+TGG 0.278604 2_1:+7689057 Msa0191960:CDS
GGTCTTGGCGCTATGGGATT+TGG 0.283365 2_1:+7689712 Msa0191960:CDS
AGGTTTGATGATCGGGTTAC+TGG 0.289362 2_1:+7689304 Msa0191960:CDS
CCTGCAAACTTCAACATATT+GGG 0.314608 2_1:-7689982 None:intergenic
CAGGTAGGTGTGAGCTCTAT+TGG 0.318135 2_1:-7689929 None:intergenic
TGCTAGTACTTTGATGGGGT+TGG 0.322703 2_1:+7689171 Msa0191960:CDS
AACAGGTTTCTGTTCCGAAT+TGG 0.337313 2_1:+7688966 Msa0191960:CDS
TGTTCCAAATGTGCCTCTTT+CGG 0.341709 2_1:-7689037 None:intergenic
ATATACCCAGTTAACCTAAT+AGG 0.345011 2_1:-7688995 None:intergenic
ATTTGGATTGCCGGCTGCCA+TGG 0.358680 2_1:+7689729 Msa0191960:CDS
GGGGAATATTTCTTTCTCAT+TGG 0.363131 2_1:-7689962 None:intergenic
GGCACCGAAAGAGGCACATT+TGG 0.369187 2_1:+7689033 Msa0191960:CDS
GATCCATTTGCAGGAATCAT+TGG 0.370032 2_1:-7690132 None:intergenic
TGAGCTTGAAGGGAGTGTTT+GGG 0.371196 2_1:-7688346 None:intergenic
TGATTCTGAAAACGTGGTTT+TGG 0.372112 2_1:-7688304 None:intergenic
GGATTTGAAGTTGGCTTTGA+AGG 0.374802 2_1:+7689426 Msa0191960:CDS
ACCTGTTGCTAGTACTTTGA+TGG 0.375227 2_1:+7689165 Msa0191960:CDS
GAAGGGAGTGTTTGGGGAAG+TGG 0.375779 2_1:-7688339 None:intergenic
CAGCCTCATGTGTCGGTTTG+TGG 0.375821 2_1:+7689403 Msa0191960:CDS
AAGCTTTATGATGAATGTTC+AGG 0.379274 2_1:+7689804 Msa0191960:CDS
ACAGGTTTCTGTTCCGAATT+GGG 0.386257 2_1:+7688967 Msa0191960:CDS
TCCTCAAAGGATCCATTTGC+AGG 0.389166 2_1:-7690141 None:intergenic
ATGTGCCTCTTTCGGTGCCT+TGG 0.389362 2_1:-7689029 None:intergenic
ACCTAAGGATATTCAGCAAC+AGG 0.392227 2_1:+7688949 Msa0191960:CDS
GGTTAACTGGGTATATGAAT+AGG 0.392870 2_1:+7689002 Msa0191960:CDS
TTCTGCTGGTCTTGGCGCTA+TGG 0.393331 2_1:+7689705 Msa0191960:CDS
ACAGCAGCTCCCATGGCAGC+CGG 0.395329 2_1:-7689739 None:intergenic
GATATTGATGCTGCTGAGAT+TGG 0.396931 2_1:+7689370 Msa0191960:CDS
TGGGGTTAGGTTTGATGATC+GGG 0.402613 2_1:+7689297 Msa0191960:CDS
GGTGTCTGCATCGCCACTTC+CGG 0.403895 2_1:+7688671 Msa0191960:CDS
CGTCGAAGCACTCGAACGTC+AGG 0.404386 2_1:+7688496 Msa0191960:CDS
GGGTTCGTTAGGGGCAAATC+GGG 0.405793 2_1:-7688453 None:intergenic
GCTAGTACTTTGATGGGGTT+GGG 0.408704 2_1:+7689172 Msa0191960:CDS
TGGTTGACTTCTGCTGGTCT+TGG 0.411154 2_1:+7689697 Msa0191960:CDS
ATAGAGAGTAAGCTTGATTT+CGG 0.412100 2_1:+7689478 Msa0191960:CDS
GAGAATTCGTTGCAGATGCT+TGG 0.413491 2_1:+7689214 Msa0191960:CDS
AACTGAATGATCAGAAAGTT+AGG 0.416856 2_1:+7689515 Msa0191960:CDS
AGCCTCATGTGTCGGTTTGT+GGG 0.418936 2_1:+7689404 Msa0191960:CDS
TTGGGGTTAGGTTTGATGAT+CGG 0.419793 2_1:+7689296 Msa0191960:CDS
TGTGCCTCTTTCGGTGCCTT+GGG 0.420636 2_1:-7689028 None:intergenic
AGGCGGTTTGTTGAGTTAAC+CGG 0.420654 2_1:+7689139 Msa0191960:CDS
GGGGTTCGTTAGGGGCAAAT+CGG 0.423916 2_1:-7688454 None:intergenic
TCCTCCGCAGTATGCTATAC+AGG 0.426227 2_1:+7689573 Msa0191960:CDS
TGCATCGCCACTTCCGGCCC+AGG 0.426512 2_1:+7688677 Msa0191960:CDS
ATTTCCATTGAAGCGCCGCC+AGG 0.431656 2_1:-7688542 None:intergenic
CCATCACCGGTCAGGTTCCC+CGG 0.439113 2_1:+7688759 Msa0191960:CDS
TCTTATTGCCATCACCGGTC+AGG 0.440205 2_1:+7688751 Msa0191960:CDS
TCTGCTGGTCTTGGCGCTAT+GGG 0.442287 2_1:+7689706 Msa0191960:CDS
GCTCGTTCCTCCGGTCTCCC+TGG 0.442490 2_1:+7688650 Msa0191960:CDS
CAATAGAGCTCACACCTACC+TGG 0.446335 2_1:+7689930 Msa0191960:CDS
TTTGGATTGCCGGCTGCCAT+GGG 0.447144 2_1:+7689730 Msa0191960:CDS
GATTTGAAGTTGGCTTTGAA+GGG 0.448952 2_1:+7689427 Msa0191960:CDS
TCTCATTGGCTGGGTCTCCC+AGG 0.453592 2_1:-7689948 None:intergenic
CCTGTTGCTAGTACTTTGAT+GGG 0.454512 2_1:+7689166 Msa0191960:CDS
GTTGGGTTCCTATCCTAGTT+CGG 0.456275 2_1:+7689189 Msa0191960:CDS
TGTTTGGGGAAGTGGAAAAT+GGG 0.456756 2_1:-7688331 None:intergenic
TGCAGGTGCTTGTGGTATAC+CGG 0.457670 2_1:+7689999 Msa0191960:CDS
CATCAAGAAGGTAGGGGCCA+GGG 0.457929 2_1:-7690080 None:intergenic
ACATCAAGAAGGTAGGGGCC+AGG 0.461753 2_1:-7690081 None:intergenic
CATCAGTACCAATCATTCTC+CGG 0.464538 2_1:-7688778 None:intergenic
TATGATGAATGTTCAGGAGT+TGG 0.465434 2_1:+7689810 Msa0191960:CDS
CAGGTTCCCCGGAGAATGAT+TGG 0.466447 2_1:+7688770 Msa0191960:CDS
ATCAGTACCAATCATTCTCC+GGG 0.467400 2_1:-7688777 None:intergenic
CCGGGGAACCTGACCGGTGA+TGG 0.468521 2_1:-7688759 None:intergenic
TTAGGTATATCGATCAAAAC+AGG 0.472536 2_1:-7688932 None:intergenic
AGTAGGGTTGGAGATGGAAG+CGG 0.473325 2_1:-7688390 None:intergenic
TTGCAGATGCTTGGGATGCA+TGG 0.475365 2_1:+7689223 Msa0191960:CDS
CCCATCAAAGTACTAGCAAC+AGG 0.475566 2_1:-7689166 None:intergenic
TTACCCTGGCGGCGCTTCAA+TGG 0.476078 2_1:+7688538 Msa0191960:CDS
AACCACAATAGCGTCGGGAT+TGG 0.482109 2_1:-7689764 None:intergenic
GTAAGCTTGATTTCGGAGGT+TGG 0.484920 2_1:+7689485 Msa0191960:CDS
AGGCAGTGGTTGACTTCTGC+TGG 0.485926 2_1:+7689691 Msa0191960:CDS
CTAATAGGTTGATCCCAATT+CGG 0.489964 2_1:-7688980 None:intergenic
TTCTTGACGAGCTTACCAAT+GGG 0.490237 2_1:+7689596 Msa0191960:CDS
TTGCCAATGATTCCTGCAAA+TGG 0.490698 2_1:+7690129 Msa0191960:CDS
GATGCAGACACCAGGGAGAC+CGG 0.491267 2_1:-7688660 None:intergenic
ATATTTCTTTCTCATTGGCT+GGG 0.491931 2_1:-7689957 None:intergenic
GAGGGTTACGCTCGTTCCTC+CGG 0.496778 2_1:+7688641 Msa0191960:CDS
CTCTTTGTCACACGAGCTGC+CGG 0.502154 2_1:-7690018 None:intergenic
CCACCACCAACATACAAAAC+AGG 0.502296 2_1:-7689091 None:intergenic
AGTAGCACCTGGGCCGGAAG+TGG 0.502445 2_1:-7688684 None:intergenic
TCCTGCAAATGGATCCTTTG+AGG 0.504950 2_1:+7690140 Msa0191960:CDS
AGAATTCGTTGCAGATGCTT+GGG 0.506752 2_1:+7689215 Msa0191960:CDS
GAAGTGGCGATGCAGACACC+AGG 0.511122 2_1:-7688668 None:intergenic
AGAGCGGTGGTTGAGCTTGA+AGG 0.511308 2_1:-7688357 None:intergenic
GGTTTGTGGGGATTTGAAGT+TGG 0.511799 2_1:+7689417 Msa0191960:CDS
ACCTGTTGCTGAATATCCTT+AGG 0.511983 2_1:-7688950 None:intergenic
TGACCGGTGATGGCAATAAG+AGG 0.515800 2_1:-7688749 None:intergenic
GCCCCTAACGAACCCCGAAA+AGG 0.516458 2_1:+7688461 Msa0191960:CDS
GATCTAGTTACCTCAACAAT+CGG 0.519783 2_1:-7688815 None:intergenic
TGAATTGTAGCGAGGAATTG+AGG 0.520671 2_1:+7689119 Msa0191960:CDS
TCAAACTTCTTATAACTCAT+CGG 0.521295 2_1:-7689541 None:intergenic
ATATTGATGCTGCTGAGATT+GGG 0.522267 2_1:+7689371 Msa0191960:CDS
ATTGGCAACAGCAGCTCCCA+TGG 0.524757 2_1:-7689746 None:intergenic
TCAGGAGTTGGCTACTATCA+AGG 0.529463 2_1:+7689822 Msa0191960:CDS
CATTCTCCGGGGAACCTGAC+CGG 0.531322 2_1:-7688765 None:intergenic
GTTCTTGACGAGCTTACCAA+TGG 0.533777 2_1:+7689595 Msa0191960:CDS
GGGGAGGCTATCATAAGTAC+TGG 0.534253 2_1:+7689616 Msa0191960:CDS
GCCTCATGTGTCGGTTTGTG+GGG 0.534297 2_1:+7689405 Msa0191960:CDS
AACGCTTCATTCACTATCCT+AGG 0.535019 2_1:-7688881 None:intergenic
GGGAAATGAATTGTTGAGGT+GGG 0.536278 2_1:-7688433 None:intergenic
GAGCGGTGGTTGAGCTTGAA+GGG 0.536459 2_1:-7688356 None:intergenic
CTGACGAGATTAGTAGCACC+TGG 0.538331 2_1:-7688695 None:intergenic
ATTGGCTGGGTCTCCCAGGT+AGG 0.539147 2_1:-7689944 None:intergenic
TTGAAGTTTGCAGGTGCTTG+TGG 0.539914 2_1:+7689991 Msa0191960:CDS
ACAAATGTCTTCGCTTACCC+TGG 0.542915 2_1:+7688524 Msa0191960:CDS
ATCAAGAAGGTAGGGGCCAG+GGG 0.543925 2_1:-7690079 None:intergenic
ACAATGACATCAAGAAGGTA+GGG 0.544765 2_1:-7690087 None:intergenic
ATATCGATCAAAACAGGTCC+AGG 0.546128 2_1:-7688926 None:intergenic
TCAAGAAACTCCGATTGTTG+AGG 0.547823 2_1:+7688805 Msa0191960:CDS
CTTGGGTATGGTTGTCCAGT+GGG 0.549540 2_1:+7689888 Msa0191960:CDS
GTTGTTGAACAATCAACACT+TGG 0.549760 2_1:+7689870 Msa0191960:CDS
GTTACCCAAGGCACCGAAAG+AGG 0.549898 2_1:+7689024 Msa0191960:CDS
GAAATGAATTGTTGAGGTGG+GGG 0.552213 2_1:-7688431 None:intergenic
ATGTCAACCACAATAGCGTC+GGG 0.553806 2_1:-7689769 None:intergenic
GTTCCTCTTATTGCCATCAC+CGG 0.554774 2_1:+7688746 Msa0191960:CDS
ATTCTCATCCGAACTAGGAT+AGG 0.554840 2_1:-7689197 None:intergenic
CACATTTGGAACAGATTGTG+AGG 0.555893 2_1:+7689047 Msa0191960:CDS
AACGAATTCTCATCCGAACT+AGG 0.556901 2_1:-7689202 None:intergenic
GAGATTAGTAGCACCTGGGC+CGG 0.558857 2_1:-7688690 None:intergenic
AAGAACAAGATAATTATGCT+TGG 0.559558 2_1:-7688843 None:intergenic
GGTACAAGAGACCGAGGCAG+TGG 0.562380 2_1:+7689677 Msa0191960:CDS
TGCAGATGCTTGGGATGCAT+GGG 0.563717 2_1:+7689224 Msa0191960:CDS
AAATGAATTGTTGAGGTGGG+GGG 0.565609 2_1:-7688430 None:intergenic
GAGGACGTTACGAATGGCGG+TGG 0.567894 2_1:-7688585 None:intergenic
GCAGAAGTCAACCACTGCCT+CGG 0.568184 2_1:-7689688 None:intergenic
CAGAAAATGTTAGATACCCC+TGG 0.568513 2_1:+7690063 Msa0191960:CDS
ATTTGAAGTTGGCTTTGAAG+GGG 0.570043 2_1:+7689428 Msa0191960:CDS
CAATATGAACAATCTTCGCC+CGG 0.571633 2_1:-7689348 None:intergenic
ACTTATCCTGCCATCACCCT+CGG 0.572531 2_1:-7690172 None:intergenic
GGAAATGAATTGTTGAGGTG+GGG 0.573854 2_1:-7688432 None:intergenic
TACAATGACATCAAGAAGGT+AGG 0.574462 2_1:-7690088 None:intergenic
TCATAACCGAGGGTGATGGC+AGG 0.574956 2_1:+7690166 Msa0191960:CDS
TGGTTGTCCAGTGGGAGGAT+CGG 0.577376 2_1:+7689896 Msa0191960:CDS
GAGCTTGAAGGGAGTGTTTG+GGG 0.580053 2_1:-7688345 None:intergenic
GAACAATCAACACTTGGGTA+TGG 0.580544 2_1:+7689876 Msa0191960:CDS
TATAGAACCGATCCTCCCAC+TGG 0.583559 2_1:-7689903 None:intergenic
TTAGCTTCTAGTGGTAGACC+TGG 0.583844 2_1:+7688908 Msa0191960:CDS
CTCGGTTATGACATCCTCAA+AGG 0.584779 2_1:-7690154 None:intergenic
GGGTATGGTTGTCCAGTGGG+AGG 0.585047 2_1:+7689891 Msa0191960:CDS
CGGCAGCTCGTGTGACAAAG+AGG 0.586144 2_1:+7690019 Msa0191960:CDS
CGGGAAATGAATTGTTGAGG+TGG 0.587217 2_1:-7688434 None:intergenic
AGGTGGAATATTCGCTGCCG+AGG 0.587958 2_1:+7688622 Msa0191960:CDS
TTCCACCTTGTTCGTGACGA+GGG 0.588122 2_1:-7688607 None:intergenic
GGTTTGATGATCGGGTTACT+GGG 0.588175 2_1:+7689305 Msa0191960:CDS
GAGAGTAAGCTTGATTTCGG+AGG 0.590245 2_1:+7689481 Msa0191960:CDS
TTGTTGAACAATCAACACTT+GGG 0.590968 2_1:+7689871 Msa0191960:CDS
GCTATCATAAGTACTGGTGT+TGG 0.593538 2_1:+7689622 Msa0191960:CDS
ATCAACCTATTAGGTTAACT+GGG 0.594575 2_1:+7688990 Msa0191960:CDS
GTCCTCCCTCGTCACGAACA+AGG 0.595803 2_1:+7688602 Msa0191960:CDS
GATGTCATAACCGAGGGTGA+TGG 0.596424 2_1:+7690162 Msa0191960:CDS
CTGCAAACTTCAACATATTG+GGG 0.597132 2_1:-7689981 None:intergenic
TGCCAATCCCGACGCTATTG+TGG 0.597385 2_1:+7689762 Msa0191960:CDS
ACTTATGATAGCCTCCCCAT+TGG 0.598564 2_1:-7689611 None:intergenic
ATTCCACCTTGTTCGTGACG+AGG 0.598895 2_1:-7688608 None:intergenic
AATAGAGCTCACACCTACCT+GGG 0.601839 2_1:+7689931 Msa0191960:CDS
TCGGGTTACTGGGAAGCTTG+AGG 0.605782 2_1:+7689315 Msa0191960:CDS
CTGTTGCTAGTACTTTGATG+GGG 0.606374 2_1:+7689167 Msa0191960:CDS
GTGGTTGACATCGATGGTGA+TGG 0.607155 2_1:+7689781 Msa0191960:CDS
GGCAGCTCGTGTGACAAAGA+GGG 0.609397 2_1:+7690020 Msa0191960:CDS
GAATAAGCAGCCTCATGTGT+CGG 0.610801 2_1:+7689396 Msa0191960:CDS
TTTCCATTGAAGCGCCGCCA+GGG 0.615322 2_1:-7688541 None:intergenic
TTGATGTTGATGATATACCT+AGG 0.619737 2_1:+7688864 Msa0191960:CDS
TTTGAGGATGTCATAACCGA+GGG 0.621237 2_1:+7690156 Msa0191960:CDS
ACGAGGGAGGACGTTACGAA+TGG 0.622770 2_1:-7688591 None:intergenic
GATGTCAACCACAATAGCGT+CGG 0.624097 2_1:-7689770 None:intergenic
GGTGGAATATTCGCTGCCGA+GGG 0.624227 2_1:+7688623 Msa0191960:CDS
GGAGGAACGAGCGTAACCCT+CGG 0.628310 2_1:-7688639 None:intergenic
TGGTGAAGATGAAGAGATGG+TGG 0.629345 2_1:-7688267 None:intergenic
TTGTGGTGAAGATGAAGAGA+TGG 0.630262 2_1:-7688270 None:intergenic
CAATGACATCAAGAAGGTAG+GGG 0.631239 2_1:-7690086 None:intergenic
GGCAACACATGCTCTTGATG+CGG 0.634193 2_1:-7690111 None:intergenic
TGACGAGCTTACCAATGGGG+AGG 0.634568 2_1:+7689600 Msa0191960:CDS
GACTGTTTATGCTAATTATG+CGG 0.636569 2_1:+7689246 Msa0191960:CDS
GCAGACACCAGGGAGACCGG+AGG 0.638324 2_1:-7688657 None:intergenic
CACCTTGTTCGTGACGAGGG+AGG 0.638696 2_1:-7688604 None:intergenic
TTTATAGGTACAAGAGACCG+AGG 0.639559 2_1:+7689671 Msa0191960:CDS
GTGTTGGACAACATCAGATG+TGG 0.643554 2_1:+7689638 Msa0191960:CDS
TGGTAGTTTGAATTGTAGCG+AGG 0.644126 2_1:+7689111 Msa0191960:CDS
AGTACTAGCAACAGGTACAC+CGG 0.645359 2_1:-7689158 None:intergenic
GCGGTACAATGACATCAAGA+AGG 0.647744 2_1:-7690092 None:intergenic
GCTATTGTGGTTGACATCGA+TGG 0.649650 2_1:+7689775 Msa0191960:CDS
ACTTGGGTATGGTTGTCCAG+TGG 0.649969 2_1:+7689887 Msa0191960:CDS
GTCGAAGCACTCGAACGTCA+GGG 0.650703 2_1:+7688497 Msa0191960:CDS
GGTAAGTGATTCTGAAAACG+TGG 0.650896 2_1:-7688310 None:intergenic
AGGGAGGACGTTACGAATGG+CGG 0.657905 2_1:-7688588 None:intergenic
AATCGGGAAATGAATTGTTG+AGG 0.661173 2_1:-7688437 None:intergenic
TCCCCACAAACCGACACATG+AGG 0.664573 2_1:-7689406 None:intergenic
GGTGCTACTAATCTCGTCAG+TGG 0.668110 2_1:+7688698 Msa0191960:CDS
ACCTGTATAGCATACTGCGG+AGG 0.674124 2_1:-7689574 None:intergenic
AGAGATGGTGGTTGTGAACG+CGG 0.674476 2_1:-7688255 None:intergenic
CTTTGAGGATGTCATAACCG+AGG 0.677141 2_1:+7690155 Msa0191960:CDS
GTATATGAATAGGTTACCCA+AGG 0.677418 2_1:+7689012 Msa0191960:CDS
TGTTGGACAACATCAGATGT+GGG 0.692591 2_1:+7689639 Msa0191960:CDS
GACGTTCGAGTGCTTCGACG+AGG 0.694030 2_1:-7688493 None:intergenic
AAGTGGCGATGCAGACACCA+GGG 0.695335 2_1:-7688667 None:intergenic
AATGTCTTCGCTTACCCTGG+CGG 0.697805 2_1:+7688527 Msa0191960:CDS
TCTTGACGAGCTTACCAATG+GGG 0.698334 2_1:+7689597 Msa0191960:CDS
TCAACAACAATATCTTAACA+GGG 0.698879 2_1:-7689855 None:intergenic
CTCCCTCGTCACGAACAAGG+TGG 0.705691 2_1:+7688605 Msa0191960:CDS
TGACGAGATTAGTAGCACCT+GGG 0.711329 2_1:-7688694 None:intergenic
GGAGTTGGCTACTATCAAGG+TGG 0.721822 2_1:+7689825 Msa0191960:CDS
AGAACCTGTATAGCATACTG+CGG 0.744810 2_1:-7689577 None:intergenic
TCAGTACCAATCATTCTCCG+GGG 0.748029 2_1:-7688776 None:intergenic
ATTGTAGCGAGGAATTGAGG+CGG 0.749278 2_1:+7689122 Msa0191960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAACAAGATAATTATGCT+TGG - chr2_1:7688846-7688865 None:intergenic 25.0%
! TCAAACTTCTTATAACTCAT+CGG - chr2_1:7689544-7689563 None:intergenic 25.0%
! TCAACAACAATATCTTAACA+GGG - chr2_1:7689858-7689877 None:intergenic 25.0%
! TTCAACAACAATATCTTAAC+AGG - chr2_1:7689859-7689878 None:intergenic 25.0%
! AAGAACAAGATAATTATGCT+TGG - chr2_1:7688846-7688865 None:intergenic 25.0%
! TCAAACTTCTTATAACTCAT+CGG - chr2_1:7689544-7689563 None:intergenic 25.0%
! TCAACAACAATATCTTAACA+GGG - chr2_1:7689858-7689877 None:intergenic 25.0%
! TTCAACAACAATATCTTAAC+AGG - chr2_1:7689859-7689878 None:intergenic 25.0%
!! TTGATGTTGATGATATACCT+AGG + chr2_1:7688864-7688883 Msa0191960:CDS 30.0%
TTAGGTATATCGATCAAAAC+AGG - chr2_1:7688935-7688954 None:intergenic 30.0%
!!! TGTTTTGATCGATATACCTA+AGG + chr2_1:7688934-7688953 Msa0191960:CDS 30.0%
ATCAACCTATTAGGTTAACT+GGG + chr2_1:7688990-7689009 Msa0191960:CDS 30.0%
ATATACCCAGTTAACCTAAT+AGG - chr2_1:7688998-7689017 None:intergenic 30.0%
! AAGAAACCTGTTTTGTATGT+TGG + chr2_1:7689085-7689104 Msa0191960:CDS 30.0%
GACTGTTTATGCTAATTATG+CGG + chr2_1:7689246-7689265 Msa0191960:CDS 30.0%
!! AATCGAATTTTGGAGAGTAA+TGG + chr2_1:7689454-7689473 Msa0191960:CDS 30.0%
!! ATCGAATTTTGGAGAGTAAT+GGG + chr2_1:7689455-7689474 Msa0191960:CDS 30.0%
ATAGAGAGTAAGCTTGATTT+CGG + chr2_1:7689478-7689497 Msa0191960:CDS 30.0%
AACTGAATGATCAGAAAGTT+AGG + chr2_1:7689515-7689534 Msa0191960:CDS 30.0%
! AAGCTTTATGATGAATGTTC+AGG + chr2_1:7689804-7689823 Msa0191960:CDS 30.0%
TTGTTGAACAATCAACACTT+GGG + chr2_1:7689871-7689890 Msa0191960:CDS 30.0%
! ATATTTCTTTCTCATTGGCT+GGG - chr2_1:7689960-7689979 None:intergenic 30.0%
AATATTTCTTTCTCATTGGC+TGG - chr2_1:7689961-7689980 None:intergenic 30.0%
!! TTGATGTTGATGATATACCT+AGG + chr2_1:7688864-7688883 Msa0191960:CDS 30.0%
TTAGGTATATCGATCAAAAC+AGG - chr2_1:7688935-7688954 None:intergenic 30.0%
!!! TGTTTTGATCGATATACCTA+AGG + chr2_1:7688934-7688953 Msa0191960:CDS 30.0%
ATCAACCTATTAGGTTAACT+GGG + chr2_1:7688990-7689009 Msa0191960:CDS 30.0%
ATATACCCAGTTAACCTAAT+AGG - chr2_1:7688998-7689017 None:intergenic 30.0%
! AAGAAACCTGTTTTGTATGT+TGG + chr2_1:7689085-7689104 Msa0191960:CDS 30.0%
GACTGTTTATGCTAATTATG+CGG + chr2_1:7689246-7689265 Msa0191960:CDS 30.0%
!! AATCGAATTTTGGAGAGTAA+TGG + chr2_1:7689454-7689473 Msa0191960:CDS 30.0%
!! ATCGAATTTTGGAGAGTAAT+GGG + chr2_1:7689455-7689474 Msa0191960:CDS 30.0%
ATAGAGAGTAAGCTTGATTT+CGG + chr2_1:7689478-7689497 Msa0191960:CDS 30.0%
AACTGAATGATCAGAAAGTT+AGG + chr2_1:7689515-7689534 Msa0191960:CDS 30.0%
! AAGCTTTATGATGAATGTTC+AGG + chr2_1:7689804-7689823 Msa0191960:CDS 30.0%
TTGTTGAACAATCAACACTT+GGG + chr2_1:7689871-7689890 Msa0191960:CDS 30.0%
! ATATTTCTTTCTCATTGGCT+GGG - chr2_1:7689960-7689979 None:intergenic 30.0%
AATATTTCTTTCTCATTGGC+TGG - chr2_1:7689961-7689980 None:intergenic 30.0%
!!! TTTTGGTTTGGAAGTGATTG+TGG - chr2_1:7688290-7688309 None:intergenic 35.0%
!! TGATTCTGAAAACGTGGTTT+TGG - chr2_1:7688307-7688326 None:intergenic 35.0%
AATCGGGAAATGAATTGTTG+AGG - chr2_1:7688440-7688459 None:intergenic 35.0%
GATCTAGTTACCTCAACAAT+CGG - chr2_1:7688818-7688837 None:intergenic 35.0%
!! GCGTTTTTATTAGCTTCTAG+TGG + chr2_1:7688899-7688918 Msa0191960:CDS 35.0%
!! CTAATAGGTTGATCCCAATT+CGG - chr2_1:7688983-7689002 None:intergenic 35.0%
GATCAACCTATTAGGTTAAC+TGG + chr2_1:7688989-7689008 Msa0191960:CDS 35.0%
GGTTAACTGGGTATATGAAT+AGG + chr2_1:7689002-7689021 Msa0191960:CDS 35.0%
GTATATGAATAGGTTACCCA+AGG + chr2_1:7689012-7689031 Msa0191960:CDS 35.0%
ACAGATTGTGAGGTTGTTAT+TGG + chr2_1:7689057-7689076 Msa0191960:CDS 35.0%
! AAACCTGTTTTGTATGTTGG+TGG + chr2_1:7689088-7689107 Msa0191960:CDS 35.0%
ATATTGATGCTGCTGAGATT+GGG + chr2_1:7689371-7689390 Msa0191960:CDS 35.0%
!! GATTTGAAGTTGGCTTTGAA+GGG + chr2_1:7689427-7689446 Msa0191960:CDS 35.0%
!! ATTTGAAGTTGGCTTTGAAG+GGG + chr2_1:7689428-7689447 Msa0191960:CDS 35.0%
TATGATGAATGTTCAGGAGT+TGG + chr2_1:7689810-7689829 Msa0191960:CDS 35.0%
GTTGTTGAACAATCAACACT+TGG + chr2_1:7689870-7689889 Msa0191960:CDS 35.0%
GGGGAATATTTCTTTCTCAT+TGG - chr2_1:7689965-7689984 None:intergenic 35.0%
CTGCAAACTTCAACATATTG+GGG - chr2_1:7689984-7690003 None:intergenic 35.0%
CCTGCAAACTTCAACATATT+GGG - chr2_1:7689985-7690004 None:intergenic 35.0%
ACCTGCAAACTTCAACATAT+TGG - chr2_1:7689986-7690005 None:intergenic 35.0%
ACAATGACATCAAGAAGGTA+GGG - chr2_1:7690090-7690109 None:intergenic 35.0%
TACAATGACATCAAGAAGGT+AGG - chr2_1:7690091-7690110 None:intergenic 35.0%
!!! TTTTGGTTTGGAAGTGATTG+TGG - chr2_1:7688290-7688309 None:intergenic 35.0%
!! TGATTCTGAAAACGTGGTTT+TGG - chr2_1:7688307-7688326 None:intergenic 35.0%
AATCGGGAAATGAATTGTTG+AGG - chr2_1:7688440-7688459 None:intergenic 35.0%
GATCTAGTTACCTCAACAAT+CGG - chr2_1:7688818-7688837 None:intergenic 35.0%
!! GCGTTTTTATTAGCTTCTAG+TGG + chr2_1:7688899-7688918 Msa0191960:CDS 35.0%
!! CTAATAGGTTGATCCCAATT+CGG - chr2_1:7688983-7689002 None:intergenic 35.0%
GATCAACCTATTAGGTTAAC+TGG + chr2_1:7688989-7689008 Msa0191960:CDS 35.0%
GGTTAACTGGGTATATGAAT+AGG + chr2_1:7689002-7689021 Msa0191960:CDS 35.0%
GTATATGAATAGGTTACCCA+AGG + chr2_1:7689012-7689031 Msa0191960:CDS 35.0%
ACAGATTGTGAGGTTGTTAT+TGG + chr2_1:7689057-7689076 Msa0191960:CDS 35.0%
! AAACCTGTTTTGTATGTTGG+TGG + chr2_1:7689088-7689107 Msa0191960:CDS 35.0%
ATATTGATGCTGCTGAGATT+GGG + chr2_1:7689371-7689390 Msa0191960:CDS 35.0%
!! GATTTGAAGTTGGCTTTGAA+GGG + chr2_1:7689427-7689446 Msa0191960:CDS 35.0%
!! ATTTGAAGTTGGCTTTGAAG+GGG + chr2_1:7689428-7689447 Msa0191960:CDS 35.0%
TATGATGAATGTTCAGGAGT+TGG + chr2_1:7689810-7689829 Msa0191960:CDS 35.0%
GTTGTTGAACAATCAACACT+TGG + chr2_1:7689870-7689889 Msa0191960:CDS 35.0%
GGGGAATATTTCTTTCTCAT+TGG - chr2_1:7689965-7689984 None:intergenic 35.0%
CTGCAAACTTCAACATATTG+GGG - chr2_1:7689984-7690003 None:intergenic 35.0%
CCTGCAAACTTCAACATATT+GGG - chr2_1:7689985-7690004 None:intergenic 35.0%
ACCTGCAAACTTCAACATAT+TGG - chr2_1:7689986-7690005 None:intergenic 35.0%
ACAATGACATCAAGAAGGTA+GGG - chr2_1:7690090-7690109 None:intergenic 35.0%
TACAATGACATCAAGAAGGT+AGG - chr2_1:7690091-7690110 None:intergenic 35.0%
TTGTGGTGAAGATGAAGAGA+TGG - chr2_1:7688273-7688292 None:intergenic 40.0%
!!! CTGAAAACGTGGTTTTGGTT+TGG - chr2_1:7688302-7688321 None:intergenic 40.0%
! GGTAAGTGATTCTGAAAACG+TGG - chr2_1:7688313-7688332 None:intergenic 40.0%
TGTTTGGGGAAGTGGAAAAT+GGG - chr2_1:7688334-7688353 None:intergenic 40.0%
!!! TTTTTGAGTAGGGTTGGAGA+TGG - chr2_1:7688399-7688418 None:intergenic 40.0%
!!! AGTGGTTTTTTGAGTAGGGT+TGG - chr2_1:7688405-7688424 None:intergenic 40.0%
!!! TGGGAGTGGTTTTTTGAGTA+GGG - chr2_1:7688409-7688428 None:intergenic 40.0%
!!! ATGGGAGTGGTTTTTTGAGT+AGG - chr2_1:7688410-7688429 None:intergenic 40.0%
AAATGAATTGTTGAGGTGGG+GGG - chr2_1:7688433-7688452 None:intergenic 40.0%
GAAATGAATTGTTGAGGTGG+GGG - chr2_1:7688434-7688453 None:intergenic 40.0%
GGAAATGAATTGTTGAGGTG+GGG - chr2_1:7688435-7688454 None:intergenic 40.0%
GGGAAATGAATTGTTGAGGT+GGG - chr2_1:7688436-7688455 None:intergenic 40.0%
ATCAGTACCAATCATTCTCC+GGG - chr2_1:7688780-7688799 None:intergenic 40.0%
CATCAGTACCAATCATTCTC+CGG - chr2_1:7688781-7688800 None:intergenic 40.0%
TCAAGAAACTCCGATTGTTG+AGG + chr2_1:7688805-7688824 Msa0191960:CDS 40.0%
AACGCTTCATTCACTATCCT+AGG - chr2_1:7688884-7688903 None:intergenic 40.0%
ATATCGATCAAAACAGGTCC+AGG - chr2_1:7688929-7688948 None:intergenic 40.0%
ACCTAAGGATATTCAGCAAC+AGG + chr2_1:7688949-7688968 Msa0191960:CDS 40.0%
ACCTGTTGCTGAATATCCTT+AGG - chr2_1:7688953-7688972 None:intergenic 40.0%
AACAGGTTTCTGTTCCGAAT+TGG + chr2_1:7688966-7688985 Msa0191960:CDS 40.0%
ACAGGTTTCTGTTCCGAATT+GGG + chr2_1:7688967-7688986 Msa0191960:CDS 40.0%
CGAATTGGGATCAACCTATT+AGG + chr2_1:7688981-7689000 Msa0191960:CDS 40.0%
TGTTCCAAATGTGCCTCTTT+CGG - chr2_1:7689040-7689059 None:intergenic 40.0%
! CACATTTGGAACAGATTGTG+AGG + chr2_1:7689047-7689066 Msa0191960:CDS 40.0%
TGGTAGTTTGAATTGTAGCG+AGG + chr2_1:7689111-7689130 Msa0191960:CDS 40.0%
TGAATTGTAGCGAGGAATTG+AGG + chr2_1:7689119-7689138 Msa0191960:CDS 40.0%
ACCTGTTGCTAGTACTTTGA+TGG + chr2_1:7689165-7689184 Msa0191960:CDS 40.0%
CCTGTTGCTAGTACTTTGAT+GGG + chr2_1:7689166-7689185 Msa0191960:CDS 40.0%
CTGTTGCTAGTACTTTGATG+GGG + chr2_1:7689167-7689186 Msa0191960:CDS 40.0%
ATTCTCATCCGAACTAGGAT+AGG - chr2_1:7689200-7689219 None:intergenic 40.0%
AACGAATTCTCATCCGAACT+AGG - chr2_1:7689205-7689224 None:intergenic 40.0%
AGAATTCGTTGCAGATGCTT+GGG + chr2_1:7689215-7689234 Msa0191960:CDS 40.0%
! AGTGATCTTTTGCTTGCGTT+TGG + chr2_1:7689277-7689296 Msa0191960:CDS 40.0%
! GTGATCTTTTGCTTGCGTTT+GGG + chr2_1:7689278-7689297 Msa0191960:CDS 40.0%
! TGATCTTTTGCTTGCGTTTG+GGG + chr2_1:7689279-7689298 Msa0191960:CDS 40.0%
! TTGGGGTTAGGTTTGATGAT+CGG + chr2_1:7689296-7689315 Msa0191960:CDS 40.0%
CAATATGAACAATCTTCGCC+CGG - chr2_1:7689351-7689370 None:intergenic 40.0%
GATATTGATGCTGCTGAGAT+TGG + chr2_1:7689370-7689389 Msa0191960:CDS 40.0%
!! GGATTTGAAGTTGGCTTTGA+AGG + chr2_1:7689426-7689445 Msa0191960:CDS 40.0%
! GAAGGGGATCAATCGAATTT+TGG + chr2_1:7689444-7689463 Msa0191960:CDS 40.0%
AGAACCTGTATAGCATACTG+CGG - chr2_1:7689580-7689599 None:intergenic 40.0%
TTCTTGACGAGCTTACCAAT+GGG + chr2_1:7689596-7689615 Msa0191960:CDS 40.0%
!! GCTATCATAAGTACTGGTGT+TGG + chr2_1:7689622-7689641 Msa0191960:CDS 40.0%
TGTTGGACAACATCAGATGT+GGG + chr2_1:7689639-7689658 Msa0191960:CDS 40.0%
TTTATAGGTACAAGAGACCG+AGG + chr2_1:7689671-7689690 Msa0191960:CDS 40.0%
GAACAATCAACACTTGGGTA+TGG + chr2_1:7689876-7689895 Msa0191960:CDS 40.0%
CCCAATATGTTGAAGTTTGC+AGG + chr2_1:7689982-7690001 Msa0191960:CDS 40.0%
! TTTTCTGAATCGCTGCTCTA+AGG - chr2_1:7690050-7690069 None:intergenic 40.0%
CAGAAAATGTTAGATACCCC+TGG + chr2_1:7690063-7690082 Msa0191960:CDS 40.0%
CAATGACATCAAGAAGGTAG+GGG - chr2_1:7690089-7690108 None:intergenic 40.0%
TTGCCAATGATTCCTGCAAA+TGG + chr2_1:7690129-7690148 Msa0191960:CDS 40.0%
GATCCATTTGCAGGAATCAT+TGG - chr2_1:7690135-7690154 None:intergenic 40.0%
TTTGAGGATGTCATAACCGA+GGG + chr2_1:7690156-7690175 Msa0191960:CDS 40.0%
TTGTGGTGAAGATGAAGAGA+TGG - chr2_1:7688273-7688292 None:intergenic 40.0%
!!! CTGAAAACGTGGTTTTGGTT+TGG - chr2_1:7688302-7688321 None:intergenic 40.0%
! GGTAAGTGATTCTGAAAACG+TGG - chr2_1:7688313-7688332 None:intergenic 40.0%
TGTTTGGGGAAGTGGAAAAT+GGG - chr2_1:7688334-7688353 None:intergenic 40.0%
!!! TTTTTGAGTAGGGTTGGAGA+TGG - chr2_1:7688399-7688418 None:intergenic 40.0%
!!! AGTGGTTTTTTGAGTAGGGT+TGG - chr2_1:7688405-7688424 None:intergenic 40.0%
!!! TGGGAGTGGTTTTTTGAGTA+GGG - chr2_1:7688409-7688428 None:intergenic 40.0%
!!! ATGGGAGTGGTTTTTTGAGT+AGG - chr2_1:7688410-7688429 None:intergenic 40.0%
AAATGAATTGTTGAGGTGGG+GGG - chr2_1:7688433-7688452 None:intergenic 40.0%
GAAATGAATTGTTGAGGTGG+GGG - chr2_1:7688434-7688453 None:intergenic 40.0%
GGAAATGAATTGTTGAGGTG+GGG - chr2_1:7688435-7688454 None:intergenic 40.0%
GGGAAATGAATTGTTGAGGT+GGG - chr2_1:7688436-7688455 None:intergenic 40.0%
ATCAGTACCAATCATTCTCC+GGG - chr2_1:7688780-7688799 None:intergenic 40.0%
CATCAGTACCAATCATTCTC+CGG - chr2_1:7688781-7688800 None:intergenic 40.0%
TCAAGAAACTCCGATTGTTG+AGG + chr2_1:7688805-7688824 Msa0191960:CDS 40.0%
AACGCTTCATTCACTATCCT+AGG - chr2_1:7688884-7688903 None:intergenic 40.0%
ATATCGATCAAAACAGGTCC+AGG - chr2_1:7688929-7688948 None:intergenic 40.0%
ACCTAAGGATATTCAGCAAC+AGG + chr2_1:7688949-7688968 Msa0191960:CDS 40.0%
ACCTGTTGCTGAATATCCTT+AGG - chr2_1:7688953-7688972 None:intergenic 40.0%
AACAGGTTTCTGTTCCGAAT+TGG + chr2_1:7688966-7688985 Msa0191960:CDS 40.0%
ACAGGTTTCTGTTCCGAATT+GGG + chr2_1:7688967-7688986 Msa0191960:CDS 40.0%
CGAATTGGGATCAACCTATT+AGG + chr2_1:7688981-7689000 Msa0191960:CDS 40.0%
TGTTCCAAATGTGCCTCTTT+CGG - chr2_1:7689040-7689059 None:intergenic 40.0%
! CACATTTGGAACAGATTGTG+AGG + chr2_1:7689047-7689066 Msa0191960:CDS 40.0%
TGGTAGTTTGAATTGTAGCG+AGG + chr2_1:7689111-7689130 Msa0191960:CDS 40.0%
TGAATTGTAGCGAGGAATTG+AGG + chr2_1:7689119-7689138 Msa0191960:CDS 40.0%
ACCTGTTGCTAGTACTTTGA+TGG + chr2_1:7689165-7689184 Msa0191960:CDS 40.0%
CCTGTTGCTAGTACTTTGAT+GGG + chr2_1:7689166-7689185 Msa0191960:CDS 40.0%
CTGTTGCTAGTACTTTGATG+GGG + chr2_1:7689167-7689186 Msa0191960:CDS 40.0%
ATTCTCATCCGAACTAGGAT+AGG - chr2_1:7689200-7689219 None:intergenic 40.0%
AACGAATTCTCATCCGAACT+AGG - chr2_1:7689205-7689224 None:intergenic 40.0%
AGAATTCGTTGCAGATGCTT+GGG + chr2_1:7689215-7689234 Msa0191960:CDS 40.0%
! AGTGATCTTTTGCTTGCGTT+TGG + chr2_1:7689277-7689296 Msa0191960:CDS 40.0%
! GTGATCTTTTGCTTGCGTTT+GGG + chr2_1:7689278-7689297 Msa0191960:CDS 40.0%
! TGATCTTTTGCTTGCGTTTG+GGG + chr2_1:7689279-7689298 Msa0191960:CDS 40.0%
! TTGGGGTTAGGTTTGATGAT+CGG + chr2_1:7689296-7689315 Msa0191960:CDS 40.0%
CAATATGAACAATCTTCGCC+CGG - chr2_1:7689351-7689370 None:intergenic 40.0%
GATATTGATGCTGCTGAGAT+TGG + chr2_1:7689370-7689389 Msa0191960:CDS 40.0%
!! GGATTTGAAGTTGGCTTTGA+AGG + chr2_1:7689426-7689445 Msa0191960:CDS 40.0%
! GAAGGGGATCAATCGAATTT+TGG + chr2_1:7689444-7689463 Msa0191960:CDS 40.0%
AGAACCTGTATAGCATACTG+CGG - chr2_1:7689580-7689599 None:intergenic 40.0%
TTCTTGACGAGCTTACCAAT+GGG + chr2_1:7689596-7689615 Msa0191960:CDS 40.0%
!! GCTATCATAAGTACTGGTGT+TGG + chr2_1:7689622-7689641 Msa0191960:CDS 40.0%
TGTTGGACAACATCAGATGT+GGG + chr2_1:7689639-7689658 Msa0191960:CDS 40.0%
TTTATAGGTACAAGAGACCG+AGG + chr2_1:7689671-7689690 Msa0191960:CDS 40.0%
GAACAATCAACACTTGGGTA+TGG + chr2_1:7689876-7689895 Msa0191960:CDS 40.0%
CCCAATATGTTGAAGTTTGC+AGG + chr2_1:7689982-7690001 Msa0191960:CDS 40.0%
! TTTTCTGAATCGCTGCTCTA+AGG - chr2_1:7690050-7690069 None:intergenic 40.0%
CAGAAAATGTTAGATACCCC+TGG + chr2_1:7690063-7690082 Msa0191960:CDS 40.0%
CAATGACATCAAGAAGGTAG+GGG - chr2_1:7690089-7690108 None:intergenic 40.0%
TTGCCAATGATTCCTGCAAA+TGG + chr2_1:7690129-7690148 Msa0191960:CDS 40.0%
GATCCATTTGCAGGAATCAT+TGG - chr2_1:7690135-7690154 None:intergenic 40.0%
TTTGAGGATGTCATAACCGA+GGG + chr2_1:7690156-7690175 Msa0191960:CDS 40.0%
TGGTGAAGATGAAGAGATGG+TGG - chr2_1:7688270-7688289 None:intergenic 45.0%
GTGTTTGGGGAAGTGGAAAA+TGG - chr2_1:7688335-7688354 None:intergenic 45.0%
!! TGAGCTTGAAGGGAGTGTTT+GGG - chr2_1:7688349-7688368 None:intergenic 45.0%
!! TTGAGCTTGAAGGGAGTGTT+TGG - chr2_1:7688350-7688369 None:intergenic 45.0%
!! AAGCGGAGATTTTGAGAGAG+CGG - chr2_1:7688376-7688395 None:intergenic 45.0%
CGGGAAATGAATTGTTGAGG+TGG - chr2_1:7688437-7688456 None:intergenic 45.0%
ACAAATGTCTTCGCTTACCC+TGG + chr2_1:7688524-7688543 Msa0191960:CDS 45.0%
TGACGAGATTAGTAGCACCT+GGG - chr2_1:7688697-7688716 None:intergenic 45.0%
GTTCCTCTTATTGCCATCAC+CGG + chr2_1:7688746-7688765 Msa0191960:CDS 45.0%
TCAGTACCAATCATTCTCCG+GGG - chr2_1:7688779-7688798 None:intergenic 45.0%
TTAGCTTCTAGTGGTAGACC+TGG + chr2_1:7688908-7688927 Msa0191960:CDS 45.0%
CCACCACCAACATACAAAAC+AGG - chr2_1:7689094-7689113 None:intergenic 45.0%
!! CCTGTTTTGTATGTTGGTGG+TGG + chr2_1:7689091-7689110 Msa0191960:CDS 45.0%
ATTGTAGCGAGGAATTGAGG+CGG + chr2_1:7689122-7689141 Msa0191960:CDS 45.0%
!! AGGCGGTTTGTTGAGTTAAC+CGG + chr2_1:7689139-7689158 Msa0191960:CDS 45.0%
AGTACTAGCAACAGGTACAC+CGG - chr2_1:7689161-7689180 None:intergenic 45.0%
! CCCATCAAAGTACTAGCAAC+AGG - chr2_1:7689169-7689188 None:intergenic 45.0%
TGCTAGTACTTTGATGGGGT+TGG + chr2_1:7689171-7689190 Msa0191960:CDS 45.0%
GCTAGTACTTTGATGGGGTT+GGG + chr2_1:7689172-7689191 Msa0191960:CDS 45.0%
GTTGGGTTCCTATCCTAGTT+CGG + chr2_1:7689189-7689208 Msa0191960:CDS 45.0%
GAGAATTCGTTGCAGATGCT+TGG + chr2_1:7689214-7689233 Msa0191960:CDS 45.0%
!! TTTTGCTTGCGTTTGGGGTT+AGG + chr2_1:7689284-7689303 Msa0191960:CDS 45.0%
! TGGGGTTAGGTTTGATGATC+GGG + chr2_1:7689297-7689316 Msa0191960:CDS 45.0%
! AGGTTTGATGATCGGGTTAC+TGG + chr2_1:7689304-7689323 Msa0191960:CDS 45.0%
! GGTTTGATGATCGGGTTACT+GGG + chr2_1:7689305-7689324 Msa0191960:CDS 45.0%
GAATAAGCAGCCTCATGTGT+CGG + chr2_1:7689396-7689415 Msa0191960:CDS 45.0%
! GGTTTGTGGGGATTTGAAGT+TGG + chr2_1:7689417-7689436 Msa0191960:CDS 45.0%
GAGAGTAAGCTTGATTTCGG+AGG + chr2_1:7689481-7689500 Msa0191960:CDS 45.0%
GTAAGCTTGATTTCGGAGGT+TGG + chr2_1:7689485-7689504 Msa0191960:CDS 45.0%
GTTCTTGACGAGCTTACCAA+TGG + chr2_1:7689595-7689614 Msa0191960:CDS 45.0%
TCTTGACGAGCTTACCAATG+GGG + chr2_1:7689597-7689616 Msa0191960:CDS 45.0%
ACTTATGATAGCCTCCCCAT+TGG - chr2_1:7689614-7689633 None:intergenic 45.0%
GTGTTGGACAACATCAGATG+TGG + chr2_1:7689638-7689657 Msa0191960:CDS 45.0%
!! TGTGGGCTGCTCAGTTTTAT+AGG + chr2_1:7689656-7689675 Msa0191960:CDS 45.0%
ATGTCAACCACAATAGCGTC+GGG - chr2_1:7689772-7689791 None:intergenic 45.0%
GATGTCAACCACAATAGCGT+CGG - chr2_1:7689773-7689792 None:intergenic 45.0%
GCTATTGTGGTTGACATCGA+TGG + chr2_1:7689775-7689794 Msa0191960:CDS 45.0%
TCAGGAGTTGGCTACTATCA+AGG + chr2_1:7689822-7689841 Msa0191960:CDS 45.0%
AATAGAGCTCACACCTACCT+GGG + chr2_1:7689931-7689950 Msa0191960:CDS 45.0%
TTGAAGTTTGCAGGTGCTTG+TGG + chr2_1:7689991-7690010 Msa0191960:CDS 45.0%
GCGGTACAATGACATCAAGA+AGG - chr2_1:7690095-7690114 None:intergenic 45.0%
TCCTGCAAATGGATCCTTTG+AGG + chr2_1:7690140-7690159 Msa0191960:CDS 45.0%
TCCTCAAAGGATCCATTTGC+AGG - chr2_1:7690144-7690163 None:intergenic 45.0%
CTCGGTTATGACATCCTCAA+AGG - chr2_1:7690157-7690176 None:intergenic 45.0%
! CTTTGAGGATGTCATAACCG+AGG + chr2_1:7690155-7690174 Msa0191960:CDS 45.0%
TGGTGAAGATGAAGAGATGG+TGG - chr2_1:7688270-7688289 None:intergenic 45.0%
GTGTTTGGGGAAGTGGAAAA+TGG - chr2_1:7688335-7688354 None:intergenic 45.0%
!! TGAGCTTGAAGGGAGTGTTT+GGG - chr2_1:7688349-7688368 None:intergenic 45.0%
!! TTGAGCTTGAAGGGAGTGTT+TGG - chr2_1:7688350-7688369 None:intergenic 45.0%
!! AAGCGGAGATTTTGAGAGAG+CGG - chr2_1:7688376-7688395 None:intergenic 45.0%
CGGGAAATGAATTGTTGAGG+TGG - chr2_1:7688437-7688456 None:intergenic 45.0%
ACAAATGTCTTCGCTTACCC+TGG + chr2_1:7688524-7688543 Msa0191960:CDS 45.0%
TGACGAGATTAGTAGCACCT+GGG - chr2_1:7688697-7688716 None:intergenic 45.0%
GTTCCTCTTATTGCCATCAC+CGG + chr2_1:7688746-7688765 Msa0191960:CDS 45.0%
TCAGTACCAATCATTCTCCG+GGG - chr2_1:7688779-7688798 None:intergenic 45.0%
TTAGCTTCTAGTGGTAGACC+TGG + chr2_1:7688908-7688927 Msa0191960:CDS 45.0%
CCACCACCAACATACAAAAC+AGG - chr2_1:7689094-7689113 None:intergenic 45.0%
!! CCTGTTTTGTATGTTGGTGG+TGG + chr2_1:7689091-7689110 Msa0191960:CDS 45.0%
ATTGTAGCGAGGAATTGAGG+CGG + chr2_1:7689122-7689141 Msa0191960:CDS 45.0%
!! AGGCGGTTTGTTGAGTTAAC+CGG + chr2_1:7689139-7689158 Msa0191960:CDS 45.0%
AGTACTAGCAACAGGTACAC+CGG - chr2_1:7689161-7689180 None:intergenic 45.0%
! CCCATCAAAGTACTAGCAAC+AGG - chr2_1:7689169-7689188 None:intergenic 45.0%
TGCTAGTACTTTGATGGGGT+TGG + chr2_1:7689171-7689190 Msa0191960:CDS 45.0%
GCTAGTACTTTGATGGGGTT+GGG + chr2_1:7689172-7689191 Msa0191960:CDS 45.0%
GTTGGGTTCCTATCCTAGTT+CGG + chr2_1:7689189-7689208 Msa0191960:CDS 45.0%
GAGAATTCGTTGCAGATGCT+TGG + chr2_1:7689214-7689233 Msa0191960:CDS 45.0%
!! TTTTGCTTGCGTTTGGGGTT+AGG + chr2_1:7689284-7689303 Msa0191960:CDS 45.0%
! TGGGGTTAGGTTTGATGATC+GGG + chr2_1:7689297-7689316 Msa0191960:CDS 45.0%
! AGGTTTGATGATCGGGTTAC+TGG + chr2_1:7689304-7689323 Msa0191960:CDS 45.0%
! GGTTTGATGATCGGGTTACT+GGG + chr2_1:7689305-7689324 Msa0191960:CDS 45.0%
GAATAAGCAGCCTCATGTGT+CGG + chr2_1:7689396-7689415 Msa0191960:CDS 45.0%
! GGTTTGTGGGGATTTGAAGT+TGG + chr2_1:7689417-7689436 Msa0191960:CDS 45.0%
GAGAGTAAGCTTGATTTCGG+AGG + chr2_1:7689481-7689500 Msa0191960:CDS 45.0%
GTAAGCTTGATTTCGGAGGT+TGG + chr2_1:7689485-7689504 Msa0191960:CDS 45.0%
GTTCTTGACGAGCTTACCAA+TGG + chr2_1:7689595-7689614 Msa0191960:CDS 45.0%
TCTTGACGAGCTTACCAATG+GGG + chr2_1:7689597-7689616 Msa0191960:CDS 45.0%
ACTTATGATAGCCTCCCCAT+TGG - chr2_1:7689614-7689633 None:intergenic 45.0%
GTGTTGGACAACATCAGATG+TGG + chr2_1:7689638-7689657 Msa0191960:CDS 45.0%
!! TGTGGGCTGCTCAGTTTTAT+AGG + chr2_1:7689656-7689675 Msa0191960:CDS 45.0%
ATGTCAACCACAATAGCGTC+GGG - chr2_1:7689772-7689791 None:intergenic 45.0%
GATGTCAACCACAATAGCGT+CGG - chr2_1:7689773-7689792 None:intergenic 45.0%
GCTATTGTGGTTGACATCGA+TGG + chr2_1:7689775-7689794 Msa0191960:CDS 45.0%
TCAGGAGTTGGCTACTATCA+AGG + chr2_1:7689822-7689841 Msa0191960:CDS 45.0%
AATAGAGCTCACACCTACCT+GGG + chr2_1:7689931-7689950 Msa0191960:CDS 45.0%
TTGAAGTTTGCAGGTGCTTG+TGG + chr2_1:7689991-7690010 Msa0191960:CDS 45.0%
GCGGTACAATGACATCAAGA+AGG - chr2_1:7690095-7690114 None:intergenic 45.0%
TCCTGCAAATGGATCCTTTG+AGG + chr2_1:7690140-7690159 Msa0191960:CDS 45.0%
TCCTCAAAGGATCCATTTGC+AGG - chr2_1:7690144-7690163 None:intergenic 45.0%
CTCGGTTATGACATCCTCAA+AGG - chr2_1:7690157-7690176 None:intergenic 45.0%
! CTTTGAGGATGTCATAACCG+AGG + chr2_1:7690155-7690174 Msa0191960:CDS 45.0%
! AGAGATGGTGGTTGTGAACG+CGG - chr2_1:7688258-7688277 None:intergenic 50.0%
!! GAGCTTGAAGGGAGTGTTTG+GGG - chr2_1:7688348-7688367 None:intergenic 50.0%
AGTAGGGTTGGAGATGGAAG+CGG - chr2_1:7688393-7688412 None:intergenic 50.0%
AATTGTTGAGGTGGGGGGAT+GGG - chr2_1:7688428-7688447 None:intergenic 50.0%
! AGGATATCTGCGCCTTTTCG+GGG - chr2_1:7688476-7688495 None:intergenic 50.0%
! GAGGATATCTGCGCCTTTTC+GGG - chr2_1:7688477-7688496 None:intergenic 50.0%
! CGAGGATATCTGCGCCTTTT+CGG - chr2_1:7688478-7688497 None:intergenic 50.0%
AATGTCTTCGCTTACCCTGG+CGG + chr2_1:7688527-7688546 Msa0191960:CDS 50.0%
TTCCACCTTGTTCGTGACGA+GGG - chr2_1:7688610-7688629 None:intergenic 50.0%
ATTCCACCTTGTTCGTGACG+AGG - chr2_1:7688611-7688630 None:intergenic 50.0%
CTGACGAGATTAGTAGCACC+TGG - chr2_1:7688698-7688717 None:intergenic 50.0%
!! GGTGCTACTAATCTCGTCAG+TGG + chr2_1:7688698-7688717 Msa0191960:CDS 50.0%
! TGACCGGTGATGGCAATAAG+AGG - chr2_1:7688752-7688771 None:intergenic 50.0%
TCTTATTGCCATCACCGGTC+AGG + chr2_1:7688751-7688770 Msa0191960:CDS 50.0%
TTGCAGATGCTTGGGATGCA+TGG + chr2_1:7689223-7689242 Msa0191960:CDS 50.0%
TGCAGATGCTTGGGATGCAT+GGG + chr2_1:7689224-7689243 Msa0191960:CDS 50.0%
!! AGCCTCATGTGTCGGTTTGT+GGG + chr2_1:7689404-7689423 Msa0191960:CDS 50.0%
TCCTCCGCAGTATGCTATAC+AGG + chr2_1:7689573-7689592 Msa0191960:CDS 50.0%
ACCTGTATAGCATACTGCGG+AGG - chr2_1:7689577-7689596 None:intergenic 50.0%
GGGGAGGCTATCATAAGTAC+TGG + chr2_1:7689616-7689635 Msa0191960:CDS 50.0%
! TGGTTGACTTCTGCTGGTCT+TGG + chr2_1:7689697-7689716 Msa0191960:CDS 50.0%
CGCTATGGGATTTGGATTGC+CGG + chr2_1:7689720-7689739 Msa0191960:CDS 50.0%
! AACCACAATAGCGTCGGGAT+TGG - chr2_1:7689767-7689786 None:intergenic 50.0%
GTGGTTGACATCGATGGTGA+TGG + chr2_1:7689781-7689800 Msa0191960:CDS 50.0%
GGAGTTGGCTACTATCAAGG+TGG + chr2_1:7689825-7689844 Msa0191960:CDS 50.0%
ACTTGGGTATGGTTGTCCAG+TGG + chr2_1:7689887-7689906 Msa0191960:CDS 50.0%
CTTGGGTATGGTTGTCCAGT+GGG + chr2_1:7689888-7689907 Msa0191960:CDS 50.0%
TATAGAACCGATCCTCCCAC+TGG - chr2_1:7689906-7689925 None:intergenic 50.0%
CAGGTAGGTGTGAGCTCTAT+TGG - chr2_1:7689932-7689951 None:intergenic 50.0%
CAATAGAGCTCACACCTACC+TGG + chr2_1:7689930-7689949 Msa0191960:CDS 50.0%
TGCAGGTGCTTGTGGTATAC+CGG + chr2_1:7689999-7690018 Msa0191960:CDS 50.0%
GGCAACACATGCTCTTGATG+CGG - chr2_1:7690114-7690133 None:intergenic 50.0%
GATGTCATAACCGAGGGTGA+TGG + chr2_1:7690162-7690181 Msa0191960:CDS 50.0%
ACTTATCCTGCCATCACCCT+CGG - chr2_1:7690175-7690194 None:intergenic 50.0%
! AGAGATGGTGGTTGTGAACG+CGG - chr2_1:7688258-7688277 None:intergenic 50.0%
!! GAGCTTGAAGGGAGTGTTTG+GGG - chr2_1:7688348-7688367 None:intergenic 50.0%
AGTAGGGTTGGAGATGGAAG+CGG - chr2_1:7688393-7688412 None:intergenic 50.0%
AATTGTTGAGGTGGGGGGAT+GGG - chr2_1:7688428-7688447 None:intergenic 50.0%
! AGGATATCTGCGCCTTTTCG+GGG - chr2_1:7688476-7688495 None:intergenic 50.0%
! GAGGATATCTGCGCCTTTTC+GGG - chr2_1:7688477-7688496 None:intergenic 50.0%
! CGAGGATATCTGCGCCTTTT+CGG - chr2_1:7688478-7688497 None:intergenic 50.0%
AATGTCTTCGCTTACCCTGG+CGG + chr2_1:7688527-7688546 Msa0191960:CDS 50.0%
TTCCACCTTGTTCGTGACGA+GGG - chr2_1:7688610-7688629 None:intergenic 50.0%
ATTCCACCTTGTTCGTGACG+AGG - chr2_1:7688611-7688630 None:intergenic 50.0%
CTGACGAGATTAGTAGCACC+TGG - chr2_1:7688698-7688717 None:intergenic 50.0%
!! GGTGCTACTAATCTCGTCAG+TGG + chr2_1:7688698-7688717 Msa0191960:CDS 50.0%
! TGACCGGTGATGGCAATAAG+AGG - chr2_1:7688752-7688771 None:intergenic 50.0%
TCTTATTGCCATCACCGGTC+AGG + chr2_1:7688751-7688770 Msa0191960:CDS 50.0%
TTGCAGATGCTTGGGATGCA+TGG + chr2_1:7689223-7689242 Msa0191960:CDS 50.0%
TGCAGATGCTTGGGATGCAT+GGG + chr2_1:7689224-7689243 Msa0191960:CDS 50.0%
!! AGCCTCATGTGTCGGTTTGT+GGG + chr2_1:7689404-7689423 Msa0191960:CDS 50.0%
TCCTCCGCAGTATGCTATAC+AGG + chr2_1:7689573-7689592 Msa0191960:CDS 50.0%
ACCTGTATAGCATACTGCGG+AGG - chr2_1:7689577-7689596 None:intergenic 50.0%
GGGGAGGCTATCATAAGTAC+TGG + chr2_1:7689616-7689635 Msa0191960:CDS 50.0%
! TGGTTGACTTCTGCTGGTCT+TGG + chr2_1:7689697-7689716 Msa0191960:CDS 50.0%
CGCTATGGGATTTGGATTGC+CGG + chr2_1:7689720-7689739 Msa0191960:CDS 50.0%
! AACCACAATAGCGTCGGGAT+TGG - chr2_1:7689767-7689786 None:intergenic 50.0%
GTGGTTGACATCGATGGTGA+TGG + chr2_1:7689781-7689800 Msa0191960:CDS 50.0%
GGAGTTGGCTACTATCAAGG+TGG + chr2_1:7689825-7689844 Msa0191960:CDS 50.0%
ACTTGGGTATGGTTGTCCAG+TGG + chr2_1:7689887-7689906 Msa0191960:CDS 50.0%
CTTGGGTATGGTTGTCCAGT+GGG + chr2_1:7689888-7689907 Msa0191960:CDS 50.0%
TATAGAACCGATCCTCCCAC+TGG - chr2_1:7689906-7689925 None:intergenic 50.0%
CAGGTAGGTGTGAGCTCTAT+TGG - chr2_1:7689932-7689951 None:intergenic 50.0%
CAATAGAGCTCACACCTACC+TGG + chr2_1:7689930-7689949 Msa0191960:CDS 50.0%
TGCAGGTGCTTGTGGTATAC+CGG + chr2_1:7689999-7690018 Msa0191960:CDS 50.0%
GGCAACACATGCTCTTGATG+CGG - chr2_1:7690114-7690133 None:intergenic 50.0%
GATGTCATAACCGAGGGTGA+TGG + chr2_1:7690162-7690181 Msa0191960:CDS 50.0%
ACTTATCCTGCCATCACCCT+CGG - chr2_1:7690175-7690194 None:intergenic 50.0%
! GAACGCGGTTTTTGCAGCAG+TGG - chr2_1:7688243-7688262 None:intergenic 55.0%
!! GAAGGGAGTGTTTGGGGAAG+TGG - chr2_1:7688342-7688361 None:intergenic 55.0%
GAGCGGTGGTTGAGCTTGAA+GGG - chr2_1:7688359-7688378 None:intergenic 55.0%
AGAGCGGTGGTTGAGCTTGA+AGG - chr2_1:7688360-7688379 None:intergenic 55.0%
!! CGGAGATTTTGAGAGAGCGG+TGG - chr2_1:7688373-7688392 None:intergenic 55.0%
GAATTGTTGAGGTGGGGGGA+TGG - chr2_1:7688429-7688448 None:intergenic 55.0%
GGGTTCGTTAGGGGCAAATC+GGG - chr2_1:7688456-7688475 None:intergenic 55.0%
GGGGTTCGTTAGGGGCAAAT+CGG - chr2_1:7688457-7688476 None:intergenic 55.0%
!! GCCTTTTCGGGGTTCGTTAG+GGG - chr2_1:7688465-7688484 None:intergenic 55.0%
!! CGCCTTTTCGGGGTTCGTTA+GGG - chr2_1:7688466-7688485 None:intergenic 55.0%
! GTCGAAGCACTCGAACGTCA+GGG + chr2_1:7688497-7688516 Msa0191960:CDS 55.0%
!! TTTCCATTGAAGCGCCGCCA+GGG - chr2_1:7688544-7688563 None:intergenic 55.0%
!! ATTTCCATTGAAGCGCCGCC+AGG - chr2_1:7688545-7688564 None:intergenic 55.0%
AGGGAGGACGTTACGAATGG+CGG - chr2_1:7688591-7688610 None:intergenic 55.0%
ACGAGGGAGGACGTTACGAA+TGG - chr2_1:7688594-7688613 None:intergenic 55.0%
AGGTGGAATATTCGCTGCCG+AGG + chr2_1:7688622-7688641 Msa0191960:CDS 55.0%
GGTGGAATATTCGCTGCCGA+GGG + chr2_1:7688623-7688642 Msa0191960:CDS 55.0%
AAGTGGCGATGCAGACACCA+GGG - chr2_1:7688670-7688689 None:intergenic 55.0%
GAGATTAGTAGCACCTGGGC+CGG - chr2_1:7688693-7688712 None:intergenic 55.0%
CAGGTTCCCCGGAGAATGAT+TGG + chr2_1:7688770-7688789 Msa0191960:CDS 55.0%
!! GTTACCCAAGGCACCGAAAG+AGG + chr2_1:7689024-7689043 Msa0191960:CDS 55.0%
!! TGTGCCTCTTTCGGTGCCTT+GGG - chr2_1:7689031-7689050 None:intergenic 55.0%
!! ATGTGCCTCTTTCGGTGCCT+TGG - chr2_1:7689032-7689051 None:intergenic 55.0%
! GGCACCGAAAGAGGCACATT+TGG + chr2_1:7689033-7689052 Msa0191960:CDS 55.0%
TCGGGTTACTGGGAAGCTTG+AGG + chr2_1:7689315-7689334 Msa0191960:CDS 55.0%
! AGCTTGAGGCTTTTGCGAGC+CGG + chr2_1:7689329-7689348 Msa0191960:CDS 55.0%
!! CAGCCTCATGTGTCGGTTTG+TGG + chr2_1:7689403-7689422 Msa0191960:CDS 55.0%
!! GCCTCATGTGTCGGTTTGTG+GGG + chr2_1:7689405-7689424 Msa0191960:CDS 55.0%
TCCCCACAAACCGACACATG+AGG - chr2_1:7689409-7689428 None:intergenic 55.0%
TGACGAGCTTACCAATGGGG+AGG + chr2_1:7689600-7689619 Msa0191960:CDS 55.0%
GCAGAAGTCAACCACTGCCT+CGG - chr2_1:7689691-7689710 None:intergenic 55.0%
! AGGCAGTGGTTGACTTCTGC+TGG + chr2_1:7689691-7689710 Msa0191960:CDS 55.0%
!! TTCTGCTGGTCTTGGCGCTA+TGG + chr2_1:7689705-7689724 Msa0191960:CDS 55.0%
!! TCTGCTGGTCTTGGCGCTAT+GGG + chr2_1:7689706-7689725 Msa0191960:CDS 55.0%
GGTCTTGGCGCTATGGGATT+TGG + chr2_1:7689712-7689731 Msa0191960:CDS 55.0%
! ATTTGGATTGCCGGCTGCCA+TGG + chr2_1:7689729-7689748 Msa0191960:CDS 55.0%
! TTTGGATTGCCGGCTGCCAT+GGG + chr2_1:7689730-7689749 Msa0191960:CDS 55.0%
ATTGGCAACAGCAGCTCCCA+TGG - chr2_1:7689749-7689768 None:intergenic 55.0%
TGCCAATCCCGACGCTATTG+TGG + chr2_1:7689762-7689781 Msa0191960:CDS 55.0%
TGGTTGTCCAGTGGGAGGAT+CGG + chr2_1:7689896-7689915 Msa0191960:CDS 55.0%
CTCTTTGTCACACGAGCTGC+CGG - chr2_1:7690021-7690040 None:intergenic 55.0%
GGCAGCTCGTGTGACAAAGA+GGG + chr2_1:7690020-7690039 Msa0191960:CDS 55.0%
ATCAAGAAGGTAGGGGCCAG+GGG - chr2_1:7690082-7690101 None:intergenic 55.0%
CATCAAGAAGGTAGGGGCCA+GGG - chr2_1:7690083-7690102 None:intergenic 55.0%
ACATCAAGAAGGTAGGGGCC+AGG - chr2_1:7690084-7690103 None:intergenic 55.0%
! TCATAACCGAGGGTGATGGC+AGG + chr2_1:7690166-7690185 Msa0191960:CDS 55.0%
! GAACGCGGTTTTTGCAGCAG+TGG - chr2_1:7688243-7688262 None:intergenic 55.0%
!! GAAGGGAGTGTTTGGGGAAG+TGG - chr2_1:7688342-7688361 None:intergenic 55.0%
GAGCGGTGGTTGAGCTTGAA+GGG - chr2_1:7688359-7688378 None:intergenic 55.0%
AGAGCGGTGGTTGAGCTTGA+AGG - chr2_1:7688360-7688379 None:intergenic 55.0%
!! CGGAGATTTTGAGAGAGCGG+TGG - chr2_1:7688373-7688392 None:intergenic 55.0%
GAATTGTTGAGGTGGGGGGA+TGG - chr2_1:7688429-7688448 None:intergenic 55.0%
GGGTTCGTTAGGGGCAAATC+GGG - chr2_1:7688456-7688475 None:intergenic 55.0%
GGGGTTCGTTAGGGGCAAAT+CGG - chr2_1:7688457-7688476 None:intergenic 55.0%
!! GCCTTTTCGGGGTTCGTTAG+GGG - chr2_1:7688465-7688484 None:intergenic 55.0%
!! CGCCTTTTCGGGGTTCGTTA+GGG - chr2_1:7688466-7688485 None:intergenic 55.0%
! GTCGAAGCACTCGAACGTCA+GGG + chr2_1:7688497-7688516 Msa0191960:CDS 55.0%
!! TTTCCATTGAAGCGCCGCCA+GGG - chr2_1:7688544-7688563 None:intergenic 55.0%
!! ATTTCCATTGAAGCGCCGCC+AGG - chr2_1:7688545-7688564 None:intergenic 55.0%
AGGGAGGACGTTACGAATGG+CGG - chr2_1:7688591-7688610 None:intergenic 55.0%
ACGAGGGAGGACGTTACGAA+TGG - chr2_1:7688594-7688613 None:intergenic 55.0%
AGGTGGAATATTCGCTGCCG+AGG + chr2_1:7688622-7688641 Msa0191960:CDS 55.0%
GGTGGAATATTCGCTGCCGA+GGG + chr2_1:7688623-7688642 Msa0191960:CDS 55.0%
AAGTGGCGATGCAGACACCA+GGG - chr2_1:7688670-7688689 None:intergenic 55.0%
GAGATTAGTAGCACCTGGGC+CGG - chr2_1:7688693-7688712 None:intergenic 55.0%
CAGGTTCCCCGGAGAATGAT+TGG + chr2_1:7688770-7688789 Msa0191960:CDS 55.0%
!! GTTACCCAAGGCACCGAAAG+AGG + chr2_1:7689024-7689043 Msa0191960:CDS 55.0%
!! TGTGCCTCTTTCGGTGCCTT+GGG - chr2_1:7689031-7689050 None:intergenic 55.0%
!! ATGTGCCTCTTTCGGTGCCT+TGG - chr2_1:7689032-7689051 None:intergenic 55.0%
! GGCACCGAAAGAGGCACATT+TGG + chr2_1:7689033-7689052 Msa0191960:CDS 55.0%
TCGGGTTACTGGGAAGCTTG+AGG + chr2_1:7689315-7689334 Msa0191960:CDS 55.0%
! AGCTTGAGGCTTTTGCGAGC+CGG + chr2_1:7689329-7689348 Msa0191960:CDS 55.0%
!! CAGCCTCATGTGTCGGTTTG+TGG + chr2_1:7689403-7689422 Msa0191960:CDS 55.0%
!! GCCTCATGTGTCGGTTTGTG+GGG + chr2_1:7689405-7689424 Msa0191960:CDS 55.0%
TCCCCACAAACCGACACATG+AGG - chr2_1:7689409-7689428 None:intergenic 55.0%
TGACGAGCTTACCAATGGGG+AGG + chr2_1:7689600-7689619 Msa0191960:CDS 55.0%
GCAGAAGTCAACCACTGCCT+CGG - chr2_1:7689691-7689710 None:intergenic 55.0%
! AGGCAGTGGTTGACTTCTGC+TGG + chr2_1:7689691-7689710 Msa0191960:CDS 55.0%
!! TTCTGCTGGTCTTGGCGCTA+TGG + chr2_1:7689705-7689724 Msa0191960:CDS 55.0%
!! TCTGCTGGTCTTGGCGCTAT+GGG + chr2_1:7689706-7689725 Msa0191960:CDS 55.0%
GGTCTTGGCGCTATGGGATT+TGG + chr2_1:7689712-7689731 Msa0191960:CDS 55.0%
! ATTTGGATTGCCGGCTGCCA+TGG + chr2_1:7689729-7689748 Msa0191960:CDS 55.0%
! TTTGGATTGCCGGCTGCCAT+GGG + chr2_1:7689730-7689749 Msa0191960:CDS 55.0%
ATTGGCAACAGCAGCTCCCA+TGG - chr2_1:7689749-7689768 None:intergenic 55.0%
TGCCAATCCCGACGCTATTG+TGG + chr2_1:7689762-7689781 Msa0191960:CDS 55.0%
TGGTTGTCCAGTGGGAGGAT+CGG + chr2_1:7689896-7689915 Msa0191960:CDS 55.0%
CTCTTTGTCACACGAGCTGC+CGG - chr2_1:7690021-7690040 None:intergenic 55.0%
GGCAGCTCGTGTGACAAAGA+GGG + chr2_1:7690020-7690039 Msa0191960:CDS 55.0%
ATCAAGAAGGTAGGGGCCAG+GGG - chr2_1:7690082-7690101 None:intergenic 55.0%
CATCAAGAAGGTAGGGGCCA+GGG - chr2_1:7690083-7690102 None:intergenic 55.0%
ACATCAAGAAGGTAGGGGCC+AGG - chr2_1:7690084-7690103 None:intergenic 55.0%
! TCATAACCGAGGGTGATGGC+AGG + chr2_1:7690166-7690185 Msa0191960:CDS 55.0%
GCCCCTAACGAACCCCGAAA+AGG + chr2_1:7688461-7688480 Msa0191960:CDS 60.0%
!! GCGCCTTTTCGGGGTTCGTT+AGG - chr2_1:7688467-7688486 None:intergenic 60.0%
GACGTTCGAGTGCTTCGACG+AGG - chr2_1:7688496-7688515 None:intergenic 60.0%
! CGTCGAAGCACTCGAACGTC+AGG + chr2_1:7688496-7688515 Msa0191960:CDS 60.0%
TTACCCTGGCGGCGCTTCAA+TGG + chr2_1:7688538-7688557 Msa0191960:CDS 60.0%
GAGGACGTTACGAATGGCGG+TGG - chr2_1:7688588-7688607 None:intergenic 60.0%
GTCCTCCCTCGTCACGAACA+AGG + chr2_1:7688602-7688621 Msa0191960:CDS 60.0%
CACCTTGTTCGTGACGAGGG+AGG - chr2_1:7688607-7688626 None:intergenic 60.0%
CTCCCTCGTCACGAACAAGG+TGG + chr2_1:7688605-7688624 Msa0191960:CDS 60.0%
GGAGGAACGAGCGTAACCCT+CGG - chr2_1:7688642-7688661 None:intergenic 60.0%
GAGGGTTACGCTCGTTCCTC+CGG + chr2_1:7688641-7688660 Msa0191960:CDS 60.0%
GATGCAGACACCAGGGAGAC+CGG - chr2_1:7688663-7688682 None:intergenic 60.0%
GAAGTGGCGATGCAGACACC+AGG - chr2_1:7688671-7688690 None:intergenic 60.0%
GGTGTCTGCATCGCCACTTC+CGG + chr2_1:7688671-7688690 Msa0191960:CDS 60.0%
CATTCTCCGGGGAACCTGAC+CGG - chr2_1:7688768-7688787 None:intergenic 60.0%
! GCTTGAGGCTTTTGCGAGCC+GGG + chr2_1:7689330-7689349 Msa0191960:CDS 60.0%
GGTACAAGAGACCGAGGCAG+TGG + chr2_1:7689677-7689696 Msa0191960:CDS 60.0%
GGGTATGGTTGTCCAGTGGG+AGG + chr2_1:7689891-7689910 Msa0191960:CDS 60.0%
ATTGGCTGGGTCTCCCAGGT+AGG - chr2_1:7689947-7689966 None:intergenic 60.0%
! TCTCATTGGCTGGGTCTCCC+AGG - chr2_1:7689951-7689970 None:intergenic 60.0%
CGGCAGCTCGTGTGACAAAG+AGG + chr2_1:7690019-7690038 Msa0191960:CDS 60.0%
GCCCCTAACGAACCCCGAAA+AGG + chr2_1:7688461-7688480 Msa0191960:CDS 60.0%
!! GCGCCTTTTCGGGGTTCGTT+AGG - chr2_1:7688467-7688486 None:intergenic 60.0%
GACGTTCGAGTGCTTCGACG+AGG - chr2_1:7688496-7688515 None:intergenic 60.0%
! CGTCGAAGCACTCGAACGTC+AGG + chr2_1:7688496-7688515 Msa0191960:CDS 60.0%
TTACCCTGGCGGCGCTTCAA+TGG + chr2_1:7688538-7688557 Msa0191960:CDS 60.0%
GAGGACGTTACGAATGGCGG+TGG - chr2_1:7688588-7688607 None:intergenic 60.0%
GTCCTCCCTCGTCACGAACA+AGG + chr2_1:7688602-7688621 Msa0191960:CDS 60.0%
CACCTTGTTCGTGACGAGGG+AGG - chr2_1:7688607-7688626 None:intergenic 60.0%
CTCCCTCGTCACGAACAAGG+TGG + chr2_1:7688605-7688624 Msa0191960:CDS 60.0%
GGAGGAACGAGCGTAACCCT+CGG - chr2_1:7688642-7688661 None:intergenic 60.0%
GAGGGTTACGCTCGTTCCTC+CGG + chr2_1:7688641-7688660 Msa0191960:CDS 60.0%
GATGCAGACACCAGGGAGAC+CGG - chr2_1:7688663-7688682 None:intergenic 60.0%
GAAGTGGCGATGCAGACACC+AGG - chr2_1:7688671-7688690 None:intergenic 60.0%
GGTGTCTGCATCGCCACTTC+CGG + chr2_1:7688671-7688690 Msa0191960:CDS 60.0%
CATTCTCCGGGGAACCTGAC+CGG - chr2_1:7688768-7688787 None:intergenic 60.0%
! GCTTGAGGCTTTTGCGAGCC+GGG + chr2_1:7689330-7689349 Msa0191960:CDS 60.0%
GGTACAAGAGACCGAGGCAG+TGG + chr2_1:7689677-7689696 Msa0191960:CDS 60.0%
GGGTATGGTTGTCCAGTGGG+AGG + chr2_1:7689891-7689910 Msa0191960:CDS 60.0%
ATTGGCTGGGTCTCCCAGGT+AGG - chr2_1:7689947-7689966 None:intergenic 60.0%
! TCTCATTGGCTGGGTCTCCC+AGG - chr2_1:7689951-7689970 None:intergenic 60.0%
CGGCAGCTCGTGTGACAAAG+AGG + chr2_1:7690019-7690038 Msa0191960:CDS 60.0%
TTGAGGTGGGGGGATGGGAG+TGG - chr2_1:7688423-7688442 None:intergenic 65.0%
AGTAGCACCTGGGCCGGAAG+TGG - chr2_1:7688687-7688706 None:intergenic 65.0%
CCATCACCGGTCAGGTTCCC+CGG + chr2_1:7688759-7688778 Msa0191960:CDS 65.0%
ACAGCAGCTCCCATGGCAGC+CGG - chr2_1:7689742-7689761 None:intergenic 65.0%
TTGAGGTGGGGGGATGGGAG+TGG - chr2_1:7688423-7688442 None:intergenic 65.0%
AGTAGCACCTGGGCCGGAAG+TGG - chr2_1:7688687-7688706 None:intergenic 65.0%
CCATCACCGGTCAGGTTCCC+CGG + chr2_1:7688759-7688778 Msa0191960:CDS 65.0%
ACAGCAGCTCCCATGGCAGC+CGG - chr2_1:7689742-7689761 None:intergenic 65.0%
GCTCGTTCCTCCGGTCTCCC+TGG + chr2_1:7688650-7688669 Msa0191960:CDS 70.0%
GCAGACACCAGGGAGACCGG+AGG - chr2_1:7688660-7688679 None:intergenic 70.0%
TGCATCGCCACTTCCGGCCC+AGG + chr2_1:7688677-7688696 Msa0191960:CDS 70.0%
CCGGGGAACCTGACCGGTGA+TGG - chr2_1:7688762-7688781 None:intergenic 70.0%
GCTCGTTCCTCCGGTCTCCC+TGG + chr2_1:7688650-7688669 Msa0191960:CDS 70.0%
GCAGACACCAGGGAGACCGG+AGG - chr2_1:7688660-7688679 None:intergenic 70.0%
TGCATCGCCACTTCCGGCCC+AGG + chr2_1:7688677-7688696 Msa0191960:CDS 70.0%
CCGGGGAACCTGACCGGTGA+TGG - chr2_1:7688762-7688781 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 7688233 7690200 7688233 ID=Msa0191960;Name=Msa0191960
chr2_1 mRNA 7688233 7690200 7688233 ID=Msa0191960-mRNA-1;Parent=Msa0191960;Name=Msa0191960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|655
chr2_1 exon 7688233 7690200 7688233 ID=Msa0191960-mRNA-1:exon:3539;Parent=Msa0191960-mRNA-1
chr2_1 CDS 7688233 7690200 7688233 ID=Msa0191960-mRNA-1:cds;Parent=Msa0191960-mRNA-1
Gene Sequence

>Msa0191960

ATGGCAGCCACTGCTGCAAAAACCGCGTTCACAACCACCATCTCTTCATCTTCACCACAATCACTTCCAAACCAAAACCACGTTTTCAGAATCACTTACCCATTTTCCACTTCCCCAAACACTCCCTTCAAGCTCAACCACCGCTCTCTCAAAATCTCCGCTTCCATCTCCAACCCTACTCAAAAAACCACTCCCATCCCCCCACCTCAACAATTCATTTCCCGATTTGCCCCTAACGAACCCCGAAAAGGCGCAGATATCCTCGTCGAAGCACTCGAACGTCAGGGAGTTACAAATGTCTTCGCTTACCCTGGCGGCGCTTCAATGGAAATTCATCAAGCACTCACGCGCTCCACCGCCATTCGTAACGTCCTCCCTCGTCACGAACAAGGTGGAATATTCGCTGCCGAGGGTTACGCTCGTTCCTCCGGTCTCCCTGGTGTCTGCATCGCCACTTCCGGCCCAGGTGCTACTAATCTCGTCAGTGGACTTGCTGATGCTATGCTTGACAGTGTTCCTCTTATTGCCATCACCGGTCAGGTTCCCCGGAGAATGATTGGTACTGATGCTTTTCAAGAAACTCCGATTGTTGAGGTAACTAGATCAATCACCAAGCATAATTATCTTGTTCTTGATGTTGATGATATACCTAGGATAGTGAATGAAGCGTTTTTATTAGCTTCTAGTGGTAGACCTGGACCTGTTTTGATCGATATACCTAAGGATATTCAGCAACAGGTTTCTGTTCCGAATTGGGATCAACCTATTAGGTTAACTGGGTATATGAATAGGTTACCCAAGGCACCGAAAGAGGCACATTTGGAACAGATTGTGAGGTTGTTATTGGAGTCTAAGAAACCTGTTTTGTATGTTGGTGGTGGTAGTTTGAATTGTAGCGAGGAATTGAGGCGGTTTGTTGAGTTAACCGGTGTACCTGTTGCTAGTACTTTGATGGGGTTGGGTTCCTATCCTAGTTCGGATGAGAATTCGTTGCAGATGCTTGGGATGCATGGGACTGTTTATGCTAATTATGCGGTTGATAAGAGTGATCTTTTGCTTGCGTTTGGGGTTAGGTTTGATGATCGGGTTACTGGGAAGCTTGAGGCTTTTGCGAGCCGGGCGAAGATTGTTCATATTGATATTGATGCTGCTGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTTTGTGGGGATTTGAAGTTGGCTTTGAAGGGGATCAATCGAATTTTGGAGAGTAATGGGATAGAGAGTAAGCTTGATTTCGGAGGTTGGAGAGAAGAACTGAATGATCAGAAAGTTAGGTTTCCGATGAGTTATAAGAAGTTTGATGAAGCTATTCCTCCGCAGTATGCTATACAGGTTCTTGACGAGCTTACCAATGGGGAGGCTATCATAAGTACTGGTGTTGGACAACATCAGATGTGGGCTGCTCAGTTTTATAGGTACAAGAGACCGAGGCAGTGGTTGACTTCTGCTGGTCTTGGCGCTATGGGATTTGGATTGCCGGCTGCCATGGGAGCTGCTGTTGCCAATCCCGACGCTATTGTGGTTGACATCGATGGTGATGGAAGCTTTATGATGAATGTTCAGGAGTTGGCTACTATCAAGGTGGAGAATCTCCCTGTTAAGATATTGTTGTTGAACAATCAACACTTGGGTATGGTTGTCCAGTGGGAGGATCGGTTCTATAAAGCCAATAGAGCTCACACCTACCTGGGAGACCCAGCCAATGAGAAAGAAATATTCCCCAATATGTTGAAGTTTGCAGGTGCTTGTGGTATACCGGCAGCTCGTGTGACAAAGAGGGCAGACCTTAGAGCAGCGATTCAGAAAATGTTAGATACCCCTGGCCCCTACCTTCTTGATGTCATTGTACCGCATCAAGAGCATGTGTTGCCAATGATTCCTGCAAATGGATCCTTTGAGGATGTCATAACCGAGGGTGATGGCAGGATAAGTTACTGA
Protein sequence

>Msa0191960

MAATAAKTAFTTTISSSSPQSLPNQNHVFRITYPFSTSPNTPFKLNHRSLKISASISNPTQKTTPIPPPQQFISRFAPNEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSTAIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADAMLDSVPLIAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVNEAFLLASSGRPGPVLIDIPKDIQQQVSVPNWDQPIRLTGYMNRLPKAPKEAHLEQIVRLLLESKKPVLYVGGGSLNCSEELRRFVELTGVPVASTLMGLGSYPSSDENSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDAAEIGKNKQPHVSVCGDLKLALKGINRILESNGIESKLDFGGWREELNDQKVRFPMSYKKFDEAIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYRYKRPRQWLTSAGLGAMGFGLPAAMGAAVANPDAIVVDIDGDGSFMMNVQELATIKVENLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPANEKEIFPNMLKFAGACGIPAARVTKRADLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPANGSFEDVITEGDGRISY*