AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1417130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417130 MtrunA17_Chr2g0281881 98.015 655 13 0 1 655 1 655 0.0 1328
Msa1417130 MtrunA17_Chr3g0132201 80.892 628 114 3 31 655 27 651 0.0 1067
Msa1417130 MtrunA17_Chr2g0290681 73.520 608 156 2 27 633 10 613 0.0 946
Msa1417130 MtrunA17_Chr6g0449041 24.644 491 330 11 84 550 6 480 5.96e-35 140
Msa1417130 MtrunA17_Chr5g0420011 22.325 542 377 17 52 574 19 535 1.69e-15 80.1
Msa1417130 MtrunA17_Chr4g0007071 22.202 545 374 17 52 574 19 535 1.88e-15 80.1
Msa1417130 MtrunA17_Chr2g0283471 21.942 515 340 17 88 572 26 508 4.87e-14 75.5
Msa1417130 MtrunA17_Chr7g0242961 22.656 512 344 16 88 574 47 531 3.92e-13 72.4
Msa1417130 MtrunA17_Chr7g0242981 23.034 534 345 18 63 574 28 517 4.81e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417130 AT3G48560.1 83.788 586 95 0 70 655 85 670 0.0 1046
Msa1417130 AT5G17380.1 27.328 494 309 12 84 550 14 484 8.58e-47 174
Msa1417130 AT5G01330.1 24.237 524 321 17 88 574 36 520 8.05e-20 94.4
Msa1417130 AT5G01320.1 22.562 523 331 15 88 574 47 531 1.23e-17 87.4
Msa1417130 AT4G33070.1 22.328 524 331 15 88 574 51 535 1.95e-16 83.6
Msa1417130 AT5G54960.1 21.782 505 353 14 88 572 51 533 1.29e-15 80.9

Find 215 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGGGATCAATCGAATTT+TGG 0.232600 tig0024442:-57702 Msa1417130:CDS
CCCAATATGTTGAAGTTTGC+AGG 0.240705 tig0024442:-57164 Msa1417130:CDS
GATCAACCTATTAGGTTAAC+TGG 0.252439 tig0024442:-58157 Msa1417130:CDS
AATATTTCTTTCTCATTGGC+TGG 0.252481 tig0024442:+57188 None:intergenic
TTGAGCTTGAAGGGAGTGTT+TGG 0.263351 tig0024442:+58799 None:intergenic
TTCAACAACAATATCTTAAC+AGG 0.266547 tig0024442:+57290 None:intergenic
GTGTTTGGGGAAGTGGAAAA+TGG 0.269439 tig0024442:+58814 None:intergenic
CGCTATGGGATTTGGATTGC+CGG 0.275397 tig0024442:-57426 Msa1417130:CDS
ACCTGCAAACTTCAACATAT+TGG 0.275568 tig0024442:+57163 None:intergenic
CGAATTGGGATCAACCTATT+AGG 0.276452 tig0024442:-58165 Msa1417130:CDS
ACAGATTGTGAGGTTGTTAT+TGG 0.278604 tig0024442:-58089 Msa1417130:CDS
GGTCTTGGCGCTATGGGATT+TGG 0.283365 tig0024442:-57434 Msa1417130:CDS
AGGTTTGATGATCGGGTTAC+TGG 0.289362 tig0024442:-57842 Msa1417130:CDS
CCTGCAAACTTCAACATATT+GGG 0.314608 tig0024442:+57164 None:intergenic
CAGGTAGGTGTGAGCTCTAT+TGG 0.318135 tig0024442:+57217 None:intergenic
TGCTAGTACTTTGATGGGGT+TGG 0.322703 tig0024442:-57975 Msa1417130:CDS
AACAGGTTTCTGTTCCGAAT+TGG 0.337313 tig0024442:-58180 Msa1417130:CDS
TGTTCCAAATGTGCCTCTTT+CGG 0.341709 tig0024442:+58109 None:intergenic
ATATACCCAGTTAACCTAAT+AGG 0.345011 tig0024442:+58151 None:intergenic
ATTTGGATTGCCGGCTGCCA+TGG 0.358680 tig0024442:-57417 Msa1417130:CDS
GGGGAATATTTCTTTCTCAT+TGG 0.363131 tig0024442:+57184 None:intergenic
GGCACCGAAAGAGGCACATT+TGG 0.369187 tig0024442:-58113 Msa1417130:CDS
GATCCATTTGCAGGAATCAT+TGG 0.370032 tig0024442:+57014 None:intergenic
TGAGCTTGAAGGGAGTGTTT+GGG 0.371196 tig0024442:+58800 None:intergenic
TGATTCTGAAAACGTGGTTT+TGG 0.372112 tig0024442:+58842 None:intergenic
GGATTTGAAGTTGGCTTTGA+AGG 0.374802 tig0024442:-57720 Msa1417130:CDS
ACCTGTTGCTAGTACTTTGA+TGG 0.375227 tig0024442:-57981 Msa1417130:CDS
GAAGGGAGTGTTTGGGGAAG+TGG 0.375779 tig0024442:+58807 None:intergenic
CAGCCTCATGTGTCGGTTTG+TGG 0.375821 tig0024442:-57743 Msa1417130:CDS
AAGCTTTATGATGAATGTTC+AGG 0.379274 tig0024442:-57342 Msa1417130:CDS
ACAGGTTTCTGTTCCGAATT+GGG 0.386257 tig0024442:-58179 Msa1417130:CDS
TCCTCAAAGGATCCATTTGC+AGG 0.389166 tig0024442:+57005 None:intergenic
ATGTGCCTCTTTCGGTGCCT+TGG 0.389362 tig0024442:+58117 None:intergenic
ACCTAAGGATATTCAGCAAC+AGG 0.392227 tig0024442:-58197 Msa1417130:CDS
GGTTAACTGGGTATATGAAT+AGG 0.392870 tig0024442:-58144 Msa1417130:CDS
TTCTGCTGGTCTTGGCGCTA+TGG 0.393331 tig0024442:-57441 Msa1417130:CDS
ACAGCAGCTCCCATGGCAGC+CGG 0.395329 tig0024442:+57407 None:intergenic
GATATTGATGCTGCTGAGAT+TGG 0.396931 tig0024442:-57776 Msa1417130:CDS
TGGGGTTAGGTTTGATGATC+GGG 0.402613 tig0024442:-57849 Msa1417130:CDS
GGTGTCTGCATCGCCACTTC+CGG 0.403895 tig0024442:-58475 Msa1417130:CDS
CGTCGAAGCACTCGAACGTC+AGG 0.404386 tig0024442:-58650 Msa1417130:CDS
GGGTTCGTTAGGGGCAAATC+GGG 0.405793 tig0024442:+58693 None:intergenic
GCTAGTACTTTGATGGGGTT+GGG 0.408704 tig0024442:-57974 Msa1417130:CDS
TGGTTGACTTCTGCTGGTCT+TGG 0.411154 tig0024442:-57449 Msa1417130:CDS
ATAGAGAGTAAGCTTGATTT+CGG 0.412100 tig0024442:-57668 Msa1417130:CDS
GAGAATTCGTTGCAGATGCT+TGG 0.413491 tig0024442:-57932 Msa1417130:CDS
AACTGAATGATCAGAAAGTT+AGG 0.416856 tig0024442:-57631 Msa1417130:CDS
AGCCTCATGTGTCGGTTTGT+GGG 0.418936 tig0024442:-57742 Msa1417130:CDS
TTGGGGTTAGGTTTGATGAT+CGG 0.419793 tig0024442:-57850 Msa1417130:CDS
TGTGCCTCTTTCGGTGCCTT+GGG 0.420636 tig0024442:+58118 None:intergenic
AGGCGGTTTGTTGAGTTAAC+CGG 0.420654 tig0024442:-58007 Msa1417130:CDS
GGGGTTCGTTAGGGGCAAAT+CGG 0.423916 tig0024442:+58692 None:intergenic
TCCTCCGCAGTATGCTATAC+AGG 0.426227 tig0024442:-57573 Msa1417130:CDS
TGCATCGCCACTTCCGGCCC+AGG 0.426512 tig0024442:-58469 Msa1417130:CDS
ATTTCCATTGAAGCGCCGCC+AGG 0.431656 tig0024442:+58604 None:intergenic
CCATCACCGGTCAGGTTCCC+CGG 0.439113 tig0024442:-58387 Msa1417130:CDS
TCTTATTGCCATCACCGGTC+AGG 0.440205 tig0024442:-58395 Msa1417130:CDS
TCTGCTGGTCTTGGCGCTAT+GGG 0.442287 tig0024442:-57440 Msa1417130:CDS
GCTCGTTCCTCCGGTCTCCC+TGG 0.442490 tig0024442:-58496 Msa1417130:CDS
CAATAGAGCTCACACCTACC+TGG 0.446335 tig0024442:-57216 Msa1417130:CDS
TTTGGATTGCCGGCTGCCAT+GGG 0.447144 tig0024442:-57416 Msa1417130:CDS
GATTTGAAGTTGGCTTTGAA+GGG 0.448952 tig0024442:-57719 Msa1417130:CDS
TCTCATTGGCTGGGTCTCCC+AGG 0.453592 tig0024442:+57198 None:intergenic
CCTGTTGCTAGTACTTTGAT+GGG 0.454512 tig0024442:-57980 Msa1417130:CDS
GTTGGGTTCCTATCCTAGTT+CGG 0.456275 tig0024442:-57957 Msa1417130:CDS
TGTTTGGGGAAGTGGAAAAT+GGG 0.456756 tig0024442:+58815 None:intergenic
TGCAGGTGCTTGTGGTATAC+CGG 0.457670 tig0024442:-57147 Msa1417130:CDS
CATCAAGAAGGTAGGGGCCA+GGG 0.457929 tig0024442:+57066 None:intergenic
ACATCAAGAAGGTAGGGGCC+AGG 0.461753 tig0024442:+57065 None:intergenic
CATCAGTACCAATCATTCTC+CGG 0.464538 tig0024442:+58368 None:intergenic
TATGATGAATGTTCAGGAGT+TGG 0.465434 tig0024442:-57336 Msa1417130:CDS
CAGGTTCCCCGGAGAATGAT+TGG 0.466447 tig0024442:-58376 Msa1417130:CDS
ATCAGTACCAATCATTCTCC+GGG 0.467400 tig0024442:+58369 None:intergenic
CCGGGGAACCTGACCGGTGA+TGG 0.468521 tig0024442:+58387 None:intergenic
TTAGGTATATCGATCAAAAC+AGG 0.472536 tig0024442:+58214 None:intergenic
AGTAGGGTTGGAGATGGAAG+CGG 0.473325 tig0024442:+58756 None:intergenic
TTGCAGATGCTTGGGATGCA+TGG 0.475365 tig0024442:-57923 Msa1417130:CDS
CCCATCAAAGTACTAGCAAC+AGG 0.475566 tig0024442:+57980 None:intergenic
TTACCCTGGCGGCGCTTCAA+TGG 0.476078 tig0024442:-58608 Msa1417130:CDS
AACCACAATAGCGTCGGGAT+TGG 0.482109 tig0024442:+57382 None:intergenic
GTAAGCTTGATTTCGGAGGT+TGG 0.484920 tig0024442:-57661 Msa1417130:CDS
AGGCAGTGGTTGACTTCTGC+TGG 0.485926 tig0024442:-57455 Msa1417130:CDS
CTAATAGGTTGATCCCAATT+CGG 0.489964 tig0024442:+58166 None:intergenic
TTCTTGACGAGCTTACCAAT+GGG 0.490237 tig0024442:-57550 Msa1417130:CDS
TTGCCAATGATTCCTGCAAA+TGG 0.490698 tig0024442:-57017 Msa1417130:CDS
GATGCAGACACCAGGGAGAC+CGG 0.491267 tig0024442:+58486 None:intergenic
ATATTTCTTTCTCATTGGCT+GGG 0.491931 tig0024442:+57189 None:intergenic
GAGGGTTACGCTCGTTCCTC+CGG 0.496778 tig0024442:-58505 Msa1417130:CDS
CTCTTTGTCACACGAGCTGC+CGG 0.502154 tig0024442:+57128 None:intergenic
CCACCACCAACATACAAAAC+AGG 0.502296 tig0024442:+58055 None:intergenic
AGTAGCACCTGGGCCGGAAG+TGG 0.502445 tig0024442:+58462 None:intergenic
TCCTGCAAATGGATCCTTTG+AGG 0.504950 tig0024442:-57006 Msa1417130:CDS
AGAATTCGTTGCAGATGCTT+GGG 0.506752 tig0024442:-57931 Msa1417130:CDS
GAAGTGGCGATGCAGACACC+AGG 0.511122 tig0024442:+58478 None:intergenic
AGAGCGGTGGTTGAGCTTGA+AGG 0.511308 tig0024442:+58789 None:intergenic
GGTTTGTGGGGATTTGAAGT+TGG 0.511799 tig0024442:-57729 Msa1417130:CDS
ACCTGTTGCTGAATATCCTT+AGG 0.511983 tig0024442:+58196 None:intergenic
TGACCGGTGATGGCAATAAG+AGG 0.515800 tig0024442:+58397 None:intergenic
GCCCCTAACGAACCCCGAAA+AGG 0.516458 tig0024442:-58685 Msa1417130:CDS
GATCTAGTTACCTCAACAAT+CGG 0.519783 tig0024442:+58331 None:intergenic
TGAATTGTAGCGAGGAATTG+AGG 0.520671 tig0024442:-58027 Msa1417130:CDS
TCAAACTTCTTATAACTCAT+CGG 0.521295 tig0024442:+57605 None:intergenic
ATATTGATGCTGCTGAGATT+GGG 0.522267 tig0024442:-57775 Msa1417130:CDS
ATTGGCAACAGCAGCTCCCA+TGG 0.524757 tig0024442:+57400 None:intergenic
TCAGGAGTTGGCTACTATCA+AGG 0.529463 tig0024442:-57324 Msa1417130:CDS
CATTCTCCGGGGAACCTGAC+CGG 0.531322 tig0024442:+58381 None:intergenic
GTTCTTGACGAGCTTACCAA+TGG 0.533777 tig0024442:-57551 Msa1417130:CDS
GGGGAGGCTATCATAAGTAC+TGG 0.534253 tig0024442:-57530 Msa1417130:CDS
GCCTCATGTGTCGGTTTGTG+GGG 0.534297 tig0024442:-57741 Msa1417130:CDS
AACGCTTCATTCACTATCCT+AGG 0.535019 tig0024442:+58265 None:intergenic
GGGAAATGAATTGTTGAGGT+GGG 0.536278 tig0024442:+58713 None:intergenic
GAGCGGTGGTTGAGCTTGAA+GGG 0.536459 tig0024442:+58790 None:intergenic
CTGACGAGATTAGTAGCACC+TGG 0.538331 tig0024442:+58451 None:intergenic
ATTGGCTGGGTCTCCCAGGT+AGG 0.539147 tig0024442:+57202 None:intergenic
TTGAAGTTTGCAGGTGCTTG+TGG 0.539914 tig0024442:-57155 Msa1417130:CDS
ACAAATGTCTTCGCTTACCC+TGG 0.542915 tig0024442:-58622 Msa1417130:CDS
ATCAAGAAGGTAGGGGCCAG+GGG 0.543925 tig0024442:+57067 None:intergenic
ACAATGACATCAAGAAGGTA+GGG 0.544765 tig0024442:+57059 None:intergenic
ATATCGATCAAAACAGGTCC+AGG 0.546128 tig0024442:+58220 None:intergenic
TCAAGAAACTCCGATTGTTG+AGG 0.547823 tig0024442:-58341 Msa1417130:CDS
CTTGGGTATGGTTGTCCAGT+GGG 0.549540 tig0024442:-57258 Msa1417130:CDS
GTTGTTGAACAATCAACACT+TGG 0.549760 tig0024442:-57276 Msa1417130:CDS
GTTACCCAAGGCACCGAAAG+AGG 0.549898 tig0024442:-58122 Msa1417130:CDS
GAAATGAATTGTTGAGGTGG+GGG 0.552213 tig0024442:+58715 None:intergenic
ATGTCAACCACAATAGCGTC+GGG 0.553806 tig0024442:+57377 None:intergenic
GTTCCTCTTATTGCCATCAC+CGG 0.554774 tig0024442:-58400 Msa1417130:CDS
ATTCTCATCCGAACTAGGAT+AGG 0.554840 tig0024442:+57949 None:intergenic
CACATTTGGAACAGATTGTG+AGG 0.555893 tig0024442:-58099 Msa1417130:CDS
AACGAATTCTCATCCGAACT+AGG 0.556901 tig0024442:+57944 None:intergenic
GAGATTAGTAGCACCTGGGC+CGG 0.558857 tig0024442:+58456 None:intergenic
AAGAACAAGATAATTATGCT+TGG 0.559558 tig0024442:+58303 None:intergenic
GGTACAAGAGACCGAGGCAG+TGG 0.562380 tig0024442:-57469 Msa1417130:CDS
TGCAGATGCTTGGGATGCAT+GGG 0.563717 tig0024442:-57922 Msa1417130:CDS
AAATGAATTGTTGAGGTGGG+GGG 0.565609 tig0024442:+58716 None:intergenic
GAGGACGTTACGAATGGCGG+TGG 0.567894 tig0024442:+58561 None:intergenic
GCAGAAGTCAACCACTGCCT+CGG 0.568184 tig0024442:+57458 None:intergenic
CAGAAAATGTTAGATACCCC+TGG 0.568513 tig0024442:-57083 Msa1417130:CDS
ATTTGAAGTTGGCTTTGAAG+GGG 0.570043 tig0024442:-57718 Msa1417130:CDS
CAATATGAACAATCTTCGCC+CGG 0.571633 tig0024442:+57798 None:intergenic
ACTTATCCTGCCATCACCCT+CGG 0.572531 tig0024442:+56974 None:intergenic
GGAAATGAATTGTTGAGGTG+GGG 0.573854 tig0024442:+58714 None:intergenic
TACAATGACATCAAGAAGGT+AGG 0.574462 tig0024442:+57058 None:intergenic
TCATAACCGAGGGTGATGGC+AGG 0.574956 tig0024442:-56980 Msa1417130:CDS
TGGTTGTCCAGTGGGAGGAT+CGG 0.577376 tig0024442:-57250 Msa1417130:CDS
GAGCTTGAAGGGAGTGTTTG+GGG 0.580053 tig0024442:+58801 None:intergenic
GAACAATCAACACTTGGGTA+TGG 0.580544 tig0024442:-57270 Msa1417130:CDS
TATAGAACCGATCCTCCCAC+TGG 0.583559 tig0024442:+57243 None:intergenic
TTAGCTTCTAGTGGTAGACC+TGG 0.583844 tig0024442:-58238 Msa1417130:CDS
CTCGGTTATGACATCCTCAA+AGG 0.584779 tig0024442:+56992 None:intergenic
GGGTATGGTTGTCCAGTGGG+AGG 0.585047 tig0024442:-57255 Msa1417130:CDS
CGGCAGCTCGTGTGACAAAG+AGG 0.586144 tig0024442:-57127 Msa1417130:CDS
CGGGAAATGAATTGTTGAGG+TGG 0.587217 tig0024442:+58712 None:intergenic
AGGTGGAATATTCGCTGCCG+AGG 0.587958 tig0024442:-58524 Msa1417130:CDS
TTCCACCTTGTTCGTGACGA+GGG 0.588122 tig0024442:+58539 None:intergenic
GGTTTGATGATCGGGTTACT+GGG 0.588175 tig0024442:-57841 Msa1417130:CDS
GAGAGTAAGCTTGATTTCGG+AGG 0.590245 tig0024442:-57665 Msa1417130:CDS
TTGTTGAACAATCAACACTT+GGG 0.590968 tig0024442:-57275 Msa1417130:CDS
GCTATCATAAGTACTGGTGT+TGG 0.593538 tig0024442:-57524 Msa1417130:CDS
ATCAACCTATTAGGTTAACT+GGG 0.594575 tig0024442:-58156 Msa1417130:CDS
GTCCTCCCTCGTCACGAACA+AGG 0.595803 tig0024442:-58544 Msa1417130:CDS
GATGTCATAACCGAGGGTGA+TGG 0.596424 tig0024442:-56984 Msa1417130:CDS
CTGCAAACTTCAACATATTG+GGG 0.597132 tig0024442:+57165 None:intergenic
TGCCAATCCCGACGCTATTG+TGG 0.597385 tig0024442:-57384 Msa1417130:CDS
ACTTATGATAGCCTCCCCAT+TGG 0.598564 tig0024442:+57535 None:intergenic
ATTCCACCTTGTTCGTGACG+AGG 0.598895 tig0024442:+58538 None:intergenic
AATAGAGCTCACACCTACCT+GGG 0.601839 tig0024442:-57215 Msa1417130:CDS
TCGGGTTACTGGGAAGCTTG+AGG 0.605782 tig0024442:-57831 Msa1417130:CDS
CTGTTGCTAGTACTTTGATG+GGG 0.606374 tig0024442:-57979 Msa1417130:CDS
GTGGTTGACATCGATGGTGA+TGG 0.607155 tig0024442:-57365 Msa1417130:CDS
GGCAGCTCGTGTGACAAAGA+GGG 0.609397 tig0024442:-57126 Msa1417130:CDS
GAATAAGCAGCCTCATGTGT+CGG 0.610801 tig0024442:-57750 Msa1417130:CDS
TTTCCATTGAAGCGCCGCCA+GGG 0.615322 tig0024442:+58605 None:intergenic
TTGATGTTGATGATATACCT+AGG 0.619737 tig0024442:-58282 Msa1417130:CDS
TTTGAGGATGTCATAACCGA+GGG 0.621237 tig0024442:-56990 Msa1417130:CDS
ACGAGGGAGGACGTTACGAA+TGG 0.622770 tig0024442:+58555 None:intergenic
GATGTCAACCACAATAGCGT+CGG 0.624097 tig0024442:+57376 None:intergenic
GGTGGAATATTCGCTGCCGA+GGG 0.624227 tig0024442:-58523 Msa1417130:CDS
GGAGGAACGAGCGTAACCCT+CGG 0.628310 tig0024442:+58507 None:intergenic
TGGTGAAGATGAAGAGATGG+TGG 0.629345 tig0024442:+58879 None:intergenic
TTGTGGTGAAGATGAAGAGA+TGG 0.630262 tig0024442:+58876 None:intergenic
CAATGACATCAAGAAGGTAG+GGG 0.631239 tig0024442:+57060 None:intergenic
GGCAACACATGCTCTTGATG+CGG 0.634193 tig0024442:+57035 None:intergenic
TGACGAGCTTACCAATGGGG+AGG 0.634568 tig0024442:-57546 Msa1417130:CDS
GACTGTTTATGCTAATTATG+CGG 0.636569 tig0024442:-57900 Msa1417130:CDS
GCAGACACCAGGGAGACCGG+AGG 0.638324 tig0024442:+58489 None:intergenic
CACCTTGTTCGTGACGAGGG+AGG 0.638696 tig0024442:+58542 None:intergenic
TTTATAGGTACAAGAGACCG+AGG 0.639559 tig0024442:-57475 Msa1417130:CDS
GTGTTGGACAACATCAGATG+TGG 0.643554 tig0024442:-57508 Msa1417130:CDS
TGGTAGTTTGAATTGTAGCG+AGG 0.644126 tig0024442:-58035 Msa1417130:CDS
AGTACTAGCAACAGGTACAC+CGG 0.645359 tig0024442:+57988 None:intergenic
GCGGTACAATGACATCAAGA+AGG 0.647744 tig0024442:+57054 None:intergenic
GCTATTGTGGTTGACATCGA+TGG 0.649650 tig0024442:-57371 Msa1417130:CDS
ACTTGGGTATGGTTGTCCAG+TGG 0.649969 tig0024442:-57259 Msa1417130:CDS
GTCGAAGCACTCGAACGTCA+GGG 0.650703 tig0024442:-58649 Msa1417130:CDS
GGTAAGTGATTCTGAAAACG+TGG 0.650896 tig0024442:+58836 None:intergenic
AGGGAGGACGTTACGAATGG+CGG 0.657905 tig0024442:+58558 None:intergenic
AATCGGGAAATGAATTGTTG+AGG 0.661173 tig0024442:+58709 None:intergenic
TCCCCACAAACCGACACATG+AGG 0.664573 tig0024442:+57740 None:intergenic
GGTGCTACTAATCTCGTCAG+TGG 0.668110 tig0024442:-58448 Msa1417130:CDS
ACCTGTATAGCATACTGCGG+AGG 0.674124 tig0024442:+57572 None:intergenic
AGAGATGGTGGTTGTGAACG+CGG 0.674476 tig0024442:+58891 None:intergenic
CTTTGAGGATGTCATAACCG+AGG 0.677141 tig0024442:-56991 Msa1417130:CDS
GTATATGAATAGGTTACCCA+AGG 0.677418 tig0024442:-58134 Msa1417130:CDS
TGTTGGACAACATCAGATGT+GGG 0.692591 tig0024442:-57507 Msa1417130:CDS
GACGTTCGAGTGCTTCGACG+AGG 0.694030 tig0024442:+58653 None:intergenic
AAGTGGCGATGCAGACACCA+GGG 0.695335 tig0024442:+58479 None:intergenic
AATGTCTTCGCTTACCCTGG+CGG 0.697805 tig0024442:-58619 Msa1417130:CDS
TCTTGACGAGCTTACCAATG+GGG 0.698334 tig0024442:-57549 Msa1417130:CDS
TCAACAACAATATCTTAACA+GGG 0.698879 tig0024442:+57291 None:intergenic
CTCCCTCGTCACGAACAAGG+TGG 0.705691 tig0024442:-58541 Msa1417130:CDS
TGACGAGATTAGTAGCACCT+GGG 0.711329 tig0024442:+58452 None:intergenic
GGAGTTGGCTACTATCAAGG+TGG 0.721822 tig0024442:-57321 Msa1417130:CDS
AGAACCTGTATAGCATACTG+CGG 0.744810 tig0024442:+57569 None:intergenic
TCAGTACCAATCATTCTCCG+GGG 0.748029 tig0024442:+58370 None:intergenic
ATTGTAGCGAGGAATTGAGG+CGG 0.749278 tig0024442:-58024 Msa1417130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAACAAGATAATTATGCT+TGG + tig0024442:57581-57600 None:intergenic 25.0%
! TCAAACTTCTTATAACTCAT+CGG + tig0024442:58279-58298 None:intergenic 25.0%
! TCAACAACAATATCTTAACA+GGG + tig0024442:58593-58612 None:intergenic 25.0%
! TTCAACAACAATATCTTAAC+AGG + tig0024442:58594-58613 None:intergenic 25.0%
! AAGAACAAGATAATTATGCT+TGG + tig0024442:57581-57600 None:intergenic 25.0%
! TCAAACTTCTTATAACTCAT+CGG + tig0024442:58279-58298 None:intergenic 25.0%
! TCAACAACAATATCTTAACA+GGG + tig0024442:58593-58612 None:intergenic 25.0%
! TTCAACAACAATATCTTAAC+AGG + tig0024442:58594-58613 None:intergenic 25.0%
!! TTGATGTTGATGATATACCT+AGG - tig0024442:57599-57618 Msa1417130:CDS 30.0%
TTAGGTATATCGATCAAAAC+AGG + tig0024442:57670-57689 None:intergenic 30.0%
!!! TGTTTTGATCGATATACCTA+AGG - tig0024442:57669-57688 Msa1417130:CDS 30.0%
ATCAACCTATTAGGTTAACT+GGG - tig0024442:57725-57744 Msa1417130:CDS 30.0%
ATATACCCAGTTAACCTAAT+AGG + tig0024442:57733-57752 None:intergenic 30.0%
! AAGAAACCTGTTTTGTATGT+TGG - tig0024442:57820-57839 Msa1417130:CDS 30.0%
GACTGTTTATGCTAATTATG+CGG - tig0024442:57981-58000 Msa1417130:CDS 30.0%
!! AATCGAATTTTGGAGAGTAA+TGG - tig0024442:58189-58208 Msa1417130:CDS 30.0%
!! ATCGAATTTTGGAGAGTAAT+GGG - tig0024442:58190-58209 Msa1417130:CDS 30.0%
ATAGAGAGTAAGCTTGATTT+CGG - tig0024442:58213-58232 Msa1417130:CDS 30.0%
AACTGAATGATCAGAAAGTT+AGG - tig0024442:58250-58269 Msa1417130:CDS 30.0%
! AAGCTTTATGATGAATGTTC+AGG - tig0024442:58539-58558 Msa1417130:CDS 30.0%
TTGTTGAACAATCAACACTT+GGG - tig0024442:58606-58625 Msa1417130:CDS 30.0%
! ATATTTCTTTCTCATTGGCT+GGG + tig0024442:58695-58714 None:intergenic 30.0%
AATATTTCTTTCTCATTGGC+TGG + tig0024442:58696-58715 None:intergenic 30.0%
!! TTGATGTTGATGATATACCT+AGG - tig0024442:57599-57618 Msa1417130:CDS 30.0%
TTAGGTATATCGATCAAAAC+AGG + tig0024442:57670-57689 None:intergenic 30.0%
!!! TGTTTTGATCGATATACCTA+AGG - tig0024442:57669-57688 Msa1417130:CDS 30.0%
ATCAACCTATTAGGTTAACT+GGG - tig0024442:57725-57744 Msa1417130:CDS 30.0%
ATATACCCAGTTAACCTAAT+AGG + tig0024442:57733-57752 None:intergenic 30.0%
! AAGAAACCTGTTTTGTATGT+TGG - tig0024442:57820-57839 Msa1417130:CDS 30.0%
GACTGTTTATGCTAATTATG+CGG - tig0024442:57981-58000 Msa1417130:CDS 30.0%
!! AATCGAATTTTGGAGAGTAA+TGG - tig0024442:58189-58208 Msa1417130:CDS 30.0%
!! ATCGAATTTTGGAGAGTAAT+GGG - tig0024442:58190-58209 Msa1417130:CDS 30.0%
ATAGAGAGTAAGCTTGATTT+CGG - tig0024442:58213-58232 Msa1417130:CDS 30.0%
AACTGAATGATCAGAAAGTT+AGG - tig0024442:58250-58269 Msa1417130:CDS 30.0%
! AAGCTTTATGATGAATGTTC+AGG - tig0024442:58539-58558 Msa1417130:CDS 30.0%
TTGTTGAACAATCAACACTT+GGG - tig0024442:58606-58625 Msa1417130:CDS 30.0%
! ATATTTCTTTCTCATTGGCT+GGG + tig0024442:58695-58714 None:intergenic 30.0%
AATATTTCTTTCTCATTGGC+TGG + tig0024442:58696-58715 None:intergenic 30.0%
!!! TTTTGGTTTGGAAGTGATTG+TGG + tig0024442:57025-57044 None:intergenic 35.0%
!! TGATTCTGAAAACGTGGTTT+TGG + tig0024442:57042-57061 None:intergenic 35.0%
AATCGGGAAATGAATTGTTG+AGG + tig0024442:57175-57194 None:intergenic 35.0%
GATCTAGTTACCTCAACAAT+CGG + tig0024442:57553-57572 None:intergenic 35.0%
!! GCGTTTTTATTAGCTTCTAG+TGG - tig0024442:57634-57653 Msa1417130:CDS 35.0%
!! CTAATAGGTTGATCCCAATT+CGG + tig0024442:57718-57737 None:intergenic 35.0%
GATCAACCTATTAGGTTAAC+TGG - tig0024442:57724-57743 Msa1417130:CDS 35.0%
GGTTAACTGGGTATATGAAT+AGG - tig0024442:57737-57756 Msa1417130:CDS 35.0%
GTATATGAATAGGTTACCCA+AGG - tig0024442:57747-57766 Msa1417130:CDS 35.0%
ACAGATTGTGAGGTTGTTAT+TGG - tig0024442:57792-57811 Msa1417130:CDS 35.0%
! AAACCTGTTTTGTATGTTGG+TGG - tig0024442:57823-57842 Msa1417130:CDS 35.0%
ATATTGATGCTGCTGAGATT+GGG - tig0024442:58106-58125 Msa1417130:CDS 35.0%
!! GATTTGAAGTTGGCTTTGAA+GGG - tig0024442:58162-58181 Msa1417130:CDS 35.0%
!! ATTTGAAGTTGGCTTTGAAG+GGG - tig0024442:58163-58182 Msa1417130:CDS 35.0%
TATGATGAATGTTCAGGAGT+TGG - tig0024442:58545-58564 Msa1417130:CDS 35.0%
GTTGTTGAACAATCAACACT+TGG - tig0024442:58605-58624 Msa1417130:CDS 35.0%
GGGGAATATTTCTTTCTCAT+TGG + tig0024442:58700-58719 None:intergenic 35.0%
CTGCAAACTTCAACATATTG+GGG + tig0024442:58719-58738 None:intergenic 35.0%
CCTGCAAACTTCAACATATT+GGG + tig0024442:58720-58739 None:intergenic 35.0%
ACCTGCAAACTTCAACATAT+TGG + tig0024442:58721-58740 None:intergenic 35.0%
ACAATGACATCAAGAAGGTA+GGG + tig0024442:58825-58844 None:intergenic 35.0%
TACAATGACATCAAGAAGGT+AGG + tig0024442:58826-58845 None:intergenic 35.0%
!!! TTTTGGTTTGGAAGTGATTG+TGG + tig0024442:57025-57044 None:intergenic 35.0%
!! TGATTCTGAAAACGTGGTTT+TGG + tig0024442:57042-57061 None:intergenic 35.0%
AATCGGGAAATGAATTGTTG+AGG + tig0024442:57175-57194 None:intergenic 35.0%
GATCTAGTTACCTCAACAAT+CGG + tig0024442:57553-57572 None:intergenic 35.0%
!! GCGTTTTTATTAGCTTCTAG+TGG - tig0024442:57634-57653 Msa1417130:CDS 35.0%
!! CTAATAGGTTGATCCCAATT+CGG + tig0024442:57718-57737 None:intergenic 35.0%
GATCAACCTATTAGGTTAAC+TGG - tig0024442:57724-57743 Msa1417130:CDS 35.0%
GGTTAACTGGGTATATGAAT+AGG - tig0024442:57737-57756 Msa1417130:CDS 35.0%
GTATATGAATAGGTTACCCA+AGG - tig0024442:57747-57766 Msa1417130:CDS 35.0%
ACAGATTGTGAGGTTGTTAT+TGG - tig0024442:57792-57811 Msa1417130:CDS 35.0%
! AAACCTGTTTTGTATGTTGG+TGG - tig0024442:57823-57842 Msa1417130:CDS 35.0%
ATATTGATGCTGCTGAGATT+GGG - tig0024442:58106-58125 Msa1417130:CDS 35.0%
!! GATTTGAAGTTGGCTTTGAA+GGG - tig0024442:58162-58181 Msa1417130:CDS 35.0%
!! ATTTGAAGTTGGCTTTGAAG+GGG - tig0024442:58163-58182 Msa1417130:CDS 35.0%
TATGATGAATGTTCAGGAGT+TGG - tig0024442:58545-58564 Msa1417130:CDS 35.0%
GTTGTTGAACAATCAACACT+TGG - tig0024442:58605-58624 Msa1417130:CDS 35.0%
GGGGAATATTTCTTTCTCAT+TGG + tig0024442:58700-58719 None:intergenic 35.0%
CTGCAAACTTCAACATATTG+GGG + tig0024442:58719-58738 None:intergenic 35.0%
CCTGCAAACTTCAACATATT+GGG + tig0024442:58720-58739 None:intergenic 35.0%
ACCTGCAAACTTCAACATAT+TGG + tig0024442:58721-58740 None:intergenic 35.0%
ACAATGACATCAAGAAGGTA+GGG + tig0024442:58825-58844 None:intergenic 35.0%
TACAATGACATCAAGAAGGT+AGG + tig0024442:58826-58845 None:intergenic 35.0%
TTGTGGTGAAGATGAAGAGA+TGG + tig0024442:57008-57027 None:intergenic 40.0%
!!! CTGAAAACGTGGTTTTGGTT+TGG + tig0024442:57037-57056 None:intergenic 40.0%
! GGTAAGTGATTCTGAAAACG+TGG + tig0024442:57048-57067 None:intergenic 40.0%
TGTTTGGGGAAGTGGAAAAT+GGG + tig0024442:57069-57088 None:intergenic 40.0%
!!! TTTTTGAGTAGGGTTGGAGA+TGG + tig0024442:57134-57153 None:intergenic 40.0%
!!! AGTGGTTTTTTGAGTAGGGT+TGG + tig0024442:57140-57159 None:intergenic 40.0%
!!! TGGGAGTGGTTTTTTGAGTA+GGG + tig0024442:57144-57163 None:intergenic 40.0%
!!! ATGGGAGTGGTTTTTTGAGT+AGG + tig0024442:57145-57164 None:intergenic 40.0%
AAATGAATTGTTGAGGTGGG+GGG + tig0024442:57168-57187 None:intergenic 40.0%
GAAATGAATTGTTGAGGTGG+GGG + tig0024442:57169-57188 None:intergenic 40.0%
GGAAATGAATTGTTGAGGTG+GGG + tig0024442:57170-57189 None:intergenic 40.0%
GGGAAATGAATTGTTGAGGT+GGG + tig0024442:57171-57190 None:intergenic 40.0%
ATCAGTACCAATCATTCTCC+GGG + tig0024442:57515-57534 None:intergenic 40.0%
CATCAGTACCAATCATTCTC+CGG + tig0024442:57516-57535 None:intergenic 40.0%
TCAAGAAACTCCGATTGTTG+AGG - tig0024442:57540-57559 Msa1417130:CDS 40.0%
AACGCTTCATTCACTATCCT+AGG + tig0024442:57619-57638 None:intergenic 40.0%
ATATCGATCAAAACAGGTCC+AGG + tig0024442:57664-57683 None:intergenic 40.0%
ACCTAAGGATATTCAGCAAC+AGG - tig0024442:57684-57703 Msa1417130:CDS 40.0%
ACCTGTTGCTGAATATCCTT+AGG + tig0024442:57688-57707 None:intergenic 40.0%
AACAGGTTTCTGTTCCGAAT+TGG - tig0024442:57701-57720 Msa1417130:CDS 40.0%
ACAGGTTTCTGTTCCGAATT+GGG - tig0024442:57702-57721 Msa1417130:CDS 40.0%
CGAATTGGGATCAACCTATT+AGG - tig0024442:57716-57735 Msa1417130:CDS 40.0%
TGTTCCAAATGTGCCTCTTT+CGG + tig0024442:57775-57794 None:intergenic 40.0%
! CACATTTGGAACAGATTGTG+AGG - tig0024442:57782-57801 Msa1417130:CDS 40.0%
TGGTAGTTTGAATTGTAGCG+AGG - tig0024442:57846-57865 Msa1417130:CDS 40.0%
TGAATTGTAGCGAGGAATTG+AGG - tig0024442:57854-57873 Msa1417130:CDS 40.0%
ACCTGTTGCTAGTACTTTGA+TGG - tig0024442:57900-57919 Msa1417130:CDS 40.0%
CCTGTTGCTAGTACTTTGAT+GGG - tig0024442:57901-57920 Msa1417130:CDS 40.0%
CTGTTGCTAGTACTTTGATG+GGG - tig0024442:57902-57921 Msa1417130:CDS 40.0%
ATTCTCATCCGAACTAGGAT+AGG + tig0024442:57935-57954 None:intergenic 40.0%
AACGAATTCTCATCCGAACT+AGG + tig0024442:57940-57959 None:intergenic 40.0%
AGAATTCGTTGCAGATGCTT+GGG - tig0024442:57950-57969 Msa1417130:CDS 40.0%
! AGTGATCTTTTGCTTGCGTT+TGG - tig0024442:58012-58031 Msa1417130:CDS 40.0%
! GTGATCTTTTGCTTGCGTTT+GGG - tig0024442:58013-58032 Msa1417130:CDS 40.0%
! TGATCTTTTGCTTGCGTTTG+GGG - tig0024442:58014-58033 Msa1417130:CDS 40.0%
! TTGGGGTTAGGTTTGATGAT+CGG - tig0024442:58031-58050 Msa1417130:CDS 40.0%
CAATATGAACAATCTTCGCC+CGG + tig0024442:58086-58105 None:intergenic 40.0%
GATATTGATGCTGCTGAGAT+TGG - tig0024442:58105-58124 Msa1417130:CDS 40.0%
!! GGATTTGAAGTTGGCTTTGA+AGG - tig0024442:58161-58180 Msa1417130:CDS 40.0%
! GAAGGGGATCAATCGAATTT+TGG - tig0024442:58179-58198 Msa1417130:CDS 40.0%
AGAACCTGTATAGCATACTG+CGG + tig0024442:58315-58334 None:intergenic 40.0%
TTCTTGACGAGCTTACCAAT+GGG - tig0024442:58331-58350 Msa1417130:CDS 40.0%
!! GCTATCATAAGTACTGGTGT+TGG - tig0024442:58357-58376 Msa1417130:CDS 40.0%
TGTTGGACAACATCAGATGT+GGG - tig0024442:58374-58393 Msa1417130:CDS 40.0%
TTTATAGGTACAAGAGACCG+AGG - tig0024442:58406-58425 Msa1417130:CDS 40.0%
GAACAATCAACACTTGGGTA+TGG - tig0024442:58611-58630 Msa1417130:CDS 40.0%
CCCAATATGTTGAAGTTTGC+AGG - tig0024442:58717-58736 Msa1417130:CDS 40.0%
! TTTTCTGAATCGCTGCTCTA+AGG + tig0024442:58785-58804 None:intergenic 40.0%
CAGAAAATGTTAGATACCCC+TGG - tig0024442:58798-58817 Msa1417130:CDS 40.0%
CAATGACATCAAGAAGGTAG+GGG + tig0024442:58824-58843 None:intergenic 40.0%
TTGCCAATGATTCCTGCAAA+TGG - tig0024442:58864-58883 Msa1417130:CDS 40.0%
GATCCATTTGCAGGAATCAT+TGG + tig0024442:58870-58889 None:intergenic 40.0%
TTTGAGGATGTCATAACCGA+GGG - tig0024442:58891-58910 Msa1417130:CDS 40.0%
TTGTGGTGAAGATGAAGAGA+TGG + tig0024442:57008-57027 None:intergenic 40.0%
!!! CTGAAAACGTGGTTTTGGTT+TGG + tig0024442:57037-57056 None:intergenic 40.0%
! GGTAAGTGATTCTGAAAACG+TGG + tig0024442:57048-57067 None:intergenic 40.0%
TGTTTGGGGAAGTGGAAAAT+GGG + tig0024442:57069-57088 None:intergenic 40.0%
!!! TTTTTGAGTAGGGTTGGAGA+TGG + tig0024442:57134-57153 None:intergenic 40.0%
!!! AGTGGTTTTTTGAGTAGGGT+TGG + tig0024442:57140-57159 None:intergenic 40.0%
!!! TGGGAGTGGTTTTTTGAGTA+GGG + tig0024442:57144-57163 None:intergenic 40.0%
!!! ATGGGAGTGGTTTTTTGAGT+AGG + tig0024442:57145-57164 None:intergenic 40.0%
AAATGAATTGTTGAGGTGGG+GGG + tig0024442:57168-57187 None:intergenic 40.0%
GAAATGAATTGTTGAGGTGG+GGG + tig0024442:57169-57188 None:intergenic 40.0%
GGAAATGAATTGTTGAGGTG+GGG + tig0024442:57170-57189 None:intergenic 40.0%
GGGAAATGAATTGTTGAGGT+GGG + tig0024442:57171-57190 None:intergenic 40.0%
ATCAGTACCAATCATTCTCC+GGG + tig0024442:57515-57534 None:intergenic 40.0%
CATCAGTACCAATCATTCTC+CGG + tig0024442:57516-57535 None:intergenic 40.0%
TCAAGAAACTCCGATTGTTG+AGG - tig0024442:57540-57559 Msa1417130:CDS 40.0%
AACGCTTCATTCACTATCCT+AGG + tig0024442:57619-57638 None:intergenic 40.0%
ATATCGATCAAAACAGGTCC+AGG + tig0024442:57664-57683 None:intergenic 40.0%
ACCTAAGGATATTCAGCAAC+AGG - tig0024442:57684-57703 Msa1417130:CDS 40.0%
ACCTGTTGCTGAATATCCTT+AGG + tig0024442:57688-57707 None:intergenic 40.0%
AACAGGTTTCTGTTCCGAAT+TGG - tig0024442:57701-57720 Msa1417130:CDS 40.0%
ACAGGTTTCTGTTCCGAATT+GGG - tig0024442:57702-57721 Msa1417130:CDS 40.0%
CGAATTGGGATCAACCTATT+AGG - tig0024442:57716-57735 Msa1417130:CDS 40.0%
TGTTCCAAATGTGCCTCTTT+CGG + tig0024442:57775-57794 None:intergenic 40.0%
! CACATTTGGAACAGATTGTG+AGG - tig0024442:57782-57801 Msa1417130:CDS 40.0%
TGGTAGTTTGAATTGTAGCG+AGG - tig0024442:57846-57865 Msa1417130:CDS 40.0%
TGAATTGTAGCGAGGAATTG+AGG - tig0024442:57854-57873 Msa1417130:CDS 40.0%
ACCTGTTGCTAGTACTTTGA+TGG - tig0024442:57900-57919 Msa1417130:CDS 40.0%
CCTGTTGCTAGTACTTTGAT+GGG - tig0024442:57901-57920 Msa1417130:CDS 40.0%
CTGTTGCTAGTACTTTGATG+GGG - tig0024442:57902-57921 Msa1417130:CDS 40.0%
ATTCTCATCCGAACTAGGAT+AGG + tig0024442:57935-57954 None:intergenic 40.0%
AACGAATTCTCATCCGAACT+AGG + tig0024442:57940-57959 None:intergenic 40.0%
AGAATTCGTTGCAGATGCTT+GGG - tig0024442:57950-57969 Msa1417130:CDS 40.0%
! AGTGATCTTTTGCTTGCGTT+TGG - tig0024442:58012-58031 Msa1417130:CDS 40.0%
! GTGATCTTTTGCTTGCGTTT+GGG - tig0024442:58013-58032 Msa1417130:CDS 40.0%
! TGATCTTTTGCTTGCGTTTG+GGG - tig0024442:58014-58033 Msa1417130:CDS 40.0%
! TTGGGGTTAGGTTTGATGAT+CGG - tig0024442:58031-58050 Msa1417130:CDS 40.0%
CAATATGAACAATCTTCGCC+CGG + tig0024442:58086-58105 None:intergenic 40.0%
GATATTGATGCTGCTGAGAT+TGG - tig0024442:58105-58124 Msa1417130:CDS 40.0%
!! GGATTTGAAGTTGGCTTTGA+AGG - tig0024442:58161-58180 Msa1417130:CDS 40.0%
! GAAGGGGATCAATCGAATTT+TGG - tig0024442:58179-58198 Msa1417130:CDS 40.0%
AGAACCTGTATAGCATACTG+CGG + tig0024442:58315-58334 None:intergenic 40.0%
TTCTTGACGAGCTTACCAAT+GGG - tig0024442:58331-58350 Msa1417130:CDS 40.0%
!! GCTATCATAAGTACTGGTGT+TGG - tig0024442:58357-58376 Msa1417130:CDS 40.0%
TGTTGGACAACATCAGATGT+GGG - tig0024442:58374-58393 Msa1417130:CDS 40.0%
TTTATAGGTACAAGAGACCG+AGG - tig0024442:58406-58425 Msa1417130:CDS 40.0%
GAACAATCAACACTTGGGTA+TGG - tig0024442:58611-58630 Msa1417130:CDS 40.0%
CCCAATATGTTGAAGTTTGC+AGG - tig0024442:58717-58736 Msa1417130:CDS 40.0%
! TTTTCTGAATCGCTGCTCTA+AGG + tig0024442:58785-58804 None:intergenic 40.0%
CAGAAAATGTTAGATACCCC+TGG - tig0024442:58798-58817 Msa1417130:CDS 40.0%
CAATGACATCAAGAAGGTAG+GGG + tig0024442:58824-58843 None:intergenic 40.0%
TTGCCAATGATTCCTGCAAA+TGG - tig0024442:58864-58883 Msa1417130:CDS 40.0%
GATCCATTTGCAGGAATCAT+TGG + tig0024442:58870-58889 None:intergenic 40.0%
TTTGAGGATGTCATAACCGA+GGG - tig0024442:58891-58910 Msa1417130:CDS 40.0%
TGGTGAAGATGAAGAGATGG+TGG + tig0024442:57005-57024 None:intergenic 45.0%
GTGTTTGGGGAAGTGGAAAA+TGG + tig0024442:57070-57089 None:intergenic 45.0%
!! TGAGCTTGAAGGGAGTGTTT+GGG + tig0024442:57084-57103 None:intergenic 45.0%
!! TTGAGCTTGAAGGGAGTGTT+TGG + tig0024442:57085-57104 None:intergenic 45.0%
!! AAGCGGAGATTTTGAGAGAG+CGG + tig0024442:57111-57130 None:intergenic 45.0%
CGGGAAATGAATTGTTGAGG+TGG + tig0024442:57172-57191 None:intergenic 45.0%
ACAAATGTCTTCGCTTACCC+TGG - tig0024442:57259-57278 Msa1417130:CDS 45.0%
TGACGAGATTAGTAGCACCT+GGG + tig0024442:57432-57451 None:intergenic 45.0%
GTTCCTCTTATTGCCATCAC+CGG - tig0024442:57481-57500 Msa1417130:CDS 45.0%
TCAGTACCAATCATTCTCCG+GGG + tig0024442:57514-57533 None:intergenic 45.0%
TTAGCTTCTAGTGGTAGACC+TGG - tig0024442:57643-57662 Msa1417130:CDS 45.0%
CCACCACCAACATACAAAAC+AGG + tig0024442:57829-57848 None:intergenic 45.0%
!! CCTGTTTTGTATGTTGGTGG+TGG - tig0024442:57826-57845 Msa1417130:CDS 45.0%
ATTGTAGCGAGGAATTGAGG+CGG - tig0024442:57857-57876 Msa1417130:CDS 45.0%
!! AGGCGGTTTGTTGAGTTAAC+CGG - tig0024442:57874-57893 Msa1417130:CDS 45.0%
AGTACTAGCAACAGGTACAC+CGG + tig0024442:57896-57915 None:intergenic 45.0%
! CCCATCAAAGTACTAGCAAC+AGG + tig0024442:57904-57923 None:intergenic 45.0%
TGCTAGTACTTTGATGGGGT+TGG - tig0024442:57906-57925 Msa1417130:CDS 45.0%
GCTAGTACTTTGATGGGGTT+GGG - tig0024442:57907-57926 Msa1417130:CDS 45.0%
GTTGGGTTCCTATCCTAGTT+CGG - tig0024442:57924-57943 Msa1417130:CDS 45.0%
GAGAATTCGTTGCAGATGCT+TGG - tig0024442:57949-57968 Msa1417130:CDS 45.0%
!! TTTTGCTTGCGTTTGGGGTT+AGG - tig0024442:58019-58038 Msa1417130:CDS 45.0%
! TGGGGTTAGGTTTGATGATC+GGG - tig0024442:58032-58051 Msa1417130:CDS 45.0%
! AGGTTTGATGATCGGGTTAC+TGG - tig0024442:58039-58058 Msa1417130:CDS 45.0%
! GGTTTGATGATCGGGTTACT+GGG - tig0024442:58040-58059 Msa1417130:CDS 45.0%
GAATAAGCAGCCTCATGTGT+CGG - tig0024442:58131-58150 Msa1417130:CDS 45.0%
! GGTTTGTGGGGATTTGAAGT+TGG - tig0024442:58152-58171 Msa1417130:CDS 45.0%
GAGAGTAAGCTTGATTTCGG+AGG - tig0024442:58216-58235 Msa1417130:CDS 45.0%
GTAAGCTTGATTTCGGAGGT+TGG - tig0024442:58220-58239 Msa1417130:CDS 45.0%
GTTCTTGACGAGCTTACCAA+TGG - tig0024442:58330-58349 Msa1417130:CDS 45.0%
TCTTGACGAGCTTACCAATG+GGG - tig0024442:58332-58351 Msa1417130:CDS 45.0%
ACTTATGATAGCCTCCCCAT+TGG + tig0024442:58349-58368 None:intergenic 45.0%
GTGTTGGACAACATCAGATG+TGG - tig0024442:58373-58392 Msa1417130:CDS 45.0%
!! TGTGGGCTGCTCAGTTTTAT+AGG - tig0024442:58391-58410 Msa1417130:CDS 45.0%
ATGTCAACCACAATAGCGTC+GGG + tig0024442:58507-58526 None:intergenic 45.0%
GATGTCAACCACAATAGCGT+CGG + tig0024442:58508-58527 None:intergenic 45.0%
GCTATTGTGGTTGACATCGA+TGG - tig0024442:58510-58529 Msa1417130:CDS 45.0%
TCAGGAGTTGGCTACTATCA+AGG - tig0024442:58557-58576 Msa1417130:CDS 45.0%
AATAGAGCTCACACCTACCT+GGG - tig0024442:58666-58685 Msa1417130:CDS 45.0%
TTGAAGTTTGCAGGTGCTTG+TGG - tig0024442:58726-58745 Msa1417130:CDS 45.0%
GCGGTACAATGACATCAAGA+AGG + tig0024442:58830-58849 None:intergenic 45.0%
TCCTGCAAATGGATCCTTTG+AGG - tig0024442:58875-58894 Msa1417130:CDS 45.0%
TCCTCAAAGGATCCATTTGC+AGG + tig0024442:58879-58898 None:intergenic 45.0%
CTCGGTTATGACATCCTCAA+AGG + tig0024442:58892-58911 None:intergenic 45.0%
! CTTTGAGGATGTCATAACCG+AGG - tig0024442:58890-58909 Msa1417130:CDS 45.0%
TGGTGAAGATGAAGAGATGG+TGG + tig0024442:57005-57024 None:intergenic 45.0%
GTGTTTGGGGAAGTGGAAAA+TGG + tig0024442:57070-57089 None:intergenic 45.0%
!! TGAGCTTGAAGGGAGTGTTT+GGG + tig0024442:57084-57103 None:intergenic 45.0%
!! TTGAGCTTGAAGGGAGTGTT+TGG + tig0024442:57085-57104 None:intergenic 45.0%
!! AAGCGGAGATTTTGAGAGAG+CGG + tig0024442:57111-57130 None:intergenic 45.0%
CGGGAAATGAATTGTTGAGG+TGG + tig0024442:57172-57191 None:intergenic 45.0%
ACAAATGTCTTCGCTTACCC+TGG - tig0024442:57259-57278 Msa1417130:CDS 45.0%
TGACGAGATTAGTAGCACCT+GGG + tig0024442:57432-57451 None:intergenic 45.0%
GTTCCTCTTATTGCCATCAC+CGG - tig0024442:57481-57500 Msa1417130:CDS 45.0%
TCAGTACCAATCATTCTCCG+GGG + tig0024442:57514-57533 None:intergenic 45.0%
TTAGCTTCTAGTGGTAGACC+TGG - tig0024442:57643-57662 Msa1417130:CDS 45.0%
CCACCACCAACATACAAAAC+AGG + tig0024442:57829-57848 None:intergenic 45.0%
!! CCTGTTTTGTATGTTGGTGG+TGG - tig0024442:57826-57845 Msa1417130:CDS 45.0%
ATTGTAGCGAGGAATTGAGG+CGG - tig0024442:57857-57876 Msa1417130:CDS 45.0%
!! AGGCGGTTTGTTGAGTTAAC+CGG - tig0024442:57874-57893 Msa1417130:CDS 45.0%
AGTACTAGCAACAGGTACAC+CGG + tig0024442:57896-57915 None:intergenic 45.0%
! CCCATCAAAGTACTAGCAAC+AGG + tig0024442:57904-57923 None:intergenic 45.0%
TGCTAGTACTTTGATGGGGT+TGG - tig0024442:57906-57925 Msa1417130:CDS 45.0%
GCTAGTACTTTGATGGGGTT+GGG - tig0024442:57907-57926 Msa1417130:CDS 45.0%
GTTGGGTTCCTATCCTAGTT+CGG - tig0024442:57924-57943 Msa1417130:CDS 45.0%
GAGAATTCGTTGCAGATGCT+TGG - tig0024442:57949-57968 Msa1417130:CDS 45.0%
!! TTTTGCTTGCGTTTGGGGTT+AGG - tig0024442:58019-58038 Msa1417130:CDS 45.0%
! TGGGGTTAGGTTTGATGATC+GGG - tig0024442:58032-58051 Msa1417130:CDS 45.0%
! AGGTTTGATGATCGGGTTAC+TGG - tig0024442:58039-58058 Msa1417130:CDS 45.0%
! GGTTTGATGATCGGGTTACT+GGG - tig0024442:58040-58059 Msa1417130:CDS 45.0%
GAATAAGCAGCCTCATGTGT+CGG - tig0024442:58131-58150 Msa1417130:CDS 45.0%
! GGTTTGTGGGGATTTGAAGT+TGG - tig0024442:58152-58171 Msa1417130:CDS 45.0%
GAGAGTAAGCTTGATTTCGG+AGG - tig0024442:58216-58235 Msa1417130:CDS 45.0%
GTAAGCTTGATTTCGGAGGT+TGG - tig0024442:58220-58239 Msa1417130:CDS 45.0%
GTTCTTGACGAGCTTACCAA+TGG - tig0024442:58330-58349 Msa1417130:CDS 45.0%
TCTTGACGAGCTTACCAATG+GGG - tig0024442:58332-58351 Msa1417130:CDS 45.0%
ACTTATGATAGCCTCCCCAT+TGG + tig0024442:58349-58368 None:intergenic 45.0%
GTGTTGGACAACATCAGATG+TGG - tig0024442:58373-58392 Msa1417130:CDS 45.0%
!! TGTGGGCTGCTCAGTTTTAT+AGG - tig0024442:58391-58410 Msa1417130:CDS 45.0%
ATGTCAACCACAATAGCGTC+GGG + tig0024442:58507-58526 None:intergenic 45.0%
GATGTCAACCACAATAGCGT+CGG + tig0024442:58508-58527 None:intergenic 45.0%
GCTATTGTGGTTGACATCGA+TGG - tig0024442:58510-58529 Msa1417130:CDS 45.0%
TCAGGAGTTGGCTACTATCA+AGG - tig0024442:58557-58576 Msa1417130:CDS 45.0%
AATAGAGCTCACACCTACCT+GGG - tig0024442:58666-58685 Msa1417130:CDS 45.0%
TTGAAGTTTGCAGGTGCTTG+TGG - tig0024442:58726-58745 Msa1417130:CDS 45.0%
GCGGTACAATGACATCAAGA+AGG + tig0024442:58830-58849 None:intergenic 45.0%
TCCTGCAAATGGATCCTTTG+AGG - tig0024442:58875-58894 Msa1417130:CDS 45.0%
TCCTCAAAGGATCCATTTGC+AGG + tig0024442:58879-58898 None:intergenic 45.0%
CTCGGTTATGACATCCTCAA+AGG + tig0024442:58892-58911 None:intergenic 45.0%
! CTTTGAGGATGTCATAACCG+AGG - tig0024442:58890-58909 Msa1417130:CDS 45.0%
! AGAGATGGTGGTTGTGAACG+CGG + tig0024442:56993-57012 None:intergenic 50.0%
!! GAGCTTGAAGGGAGTGTTTG+GGG + tig0024442:57083-57102 None:intergenic 50.0%
AGTAGGGTTGGAGATGGAAG+CGG + tig0024442:57128-57147 None:intergenic 50.0%
AATTGTTGAGGTGGGGGGAT+GGG + tig0024442:57163-57182 None:intergenic 50.0%
! AGGATATCTGCGCCTTTTCG+GGG + tig0024442:57211-57230 None:intergenic 50.0%
! GAGGATATCTGCGCCTTTTC+GGG + tig0024442:57212-57231 None:intergenic 50.0%
! CGAGGATATCTGCGCCTTTT+CGG + tig0024442:57213-57232 None:intergenic 50.0%
AATGTCTTCGCTTACCCTGG+CGG - tig0024442:57262-57281 Msa1417130:CDS 50.0%
TTCCACCTTGTTCGTGACGA+GGG + tig0024442:57345-57364 None:intergenic 50.0%
ATTCCACCTTGTTCGTGACG+AGG + tig0024442:57346-57365 None:intergenic 50.0%
CTGACGAGATTAGTAGCACC+TGG + tig0024442:57433-57452 None:intergenic 50.0%
!! GGTGCTACTAATCTCGTCAG+TGG - tig0024442:57433-57452 Msa1417130:CDS 50.0%
! TGACCGGTGATGGCAATAAG+AGG + tig0024442:57487-57506 None:intergenic 50.0%
TCTTATTGCCATCACCGGTC+AGG - tig0024442:57486-57505 Msa1417130:CDS 50.0%
TTGCAGATGCTTGGGATGCA+TGG - tig0024442:57958-57977 Msa1417130:CDS 50.0%
TGCAGATGCTTGGGATGCAT+GGG - tig0024442:57959-57978 Msa1417130:CDS 50.0%
!! AGCCTCATGTGTCGGTTTGT+GGG - tig0024442:58139-58158 Msa1417130:CDS 50.0%
TCCTCCGCAGTATGCTATAC+AGG - tig0024442:58308-58327 Msa1417130:CDS 50.0%
ACCTGTATAGCATACTGCGG+AGG + tig0024442:58312-58331 None:intergenic 50.0%
GGGGAGGCTATCATAAGTAC+TGG - tig0024442:58351-58370 Msa1417130:CDS 50.0%
! TGGTTGACTTCTGCTGGTCT+TGG - tig0024442:58432-58451 Msa1417130:CDS 50.0%
CGCTATGGGATTTGGATTGC+CGG - tig0024442:58455-58474 Msa1417130:CDS 50.0%
! AACCACAATAGCGTCGGGAT+TGG + tig0024442:58502-58521 None:intergenic 50.0%
GTGGTTGACATCGATGGTGA+TGG - tig0024442:58516-58535 Msa1417130:CDS 50.0%
GGAGTTGGCTACTATCAAGG+TGG - tig0024442:58560-58579 Msa1417130:CDS 50.0%
ACTTGGGTATGGTTGTCCAG+TGG - tig0024442:58622-58641 Msa1417130:CDS 50.0%
CTTGGGTATGGTTGTCCAGT+GGG - tig0024442:58623-58642 Msa1417130:CDS 50.0%
TATAGAACCGATCCTCCCAC+TGG + tig0024442:58641-58660 None:intergenic 50.0%
CAGGTAGGTGTGAGCTCTAT+TGG + tig0024442:58667-58686 None:intergenic 50.0%
CAATAGAGCTCACACCTACC+TGG - tig0024442:58665-58684 Msa1417130:CDS 50.0%
TGCAGGTGCTTGTGGTATAC+CGG - tig0024442:58734-58753 Msa1417130:CDS 50.0%
GGCAACACATGCTCTTGATG+CGG + tig0024442:58849-58868 None:intergenic 50.0%
GATGTCATAACCGAGGGTGA+TGG - tig0024442:58897-58916 Msa1417130:CDS 50.0%
ACTTATCCTGCCATCACCCT+CGG + tig0024442:58910-58929 None:intergenic 50.0%
! AGAGATGGTGGTTGTGAACG+CGG + tig0024442:56993-57012 None:intergenic 50.0%
!! GAGCTTGAAGGGAGTGTTTG+GGG + tig0024442:57083-57102 None:intergenic 50.0%
AGTAGGGTTGGAGATGGAAG+CGG + tig0024442:57128-57147 None:intergenic 50.0%
AATTGTTGAGGTGGGGGGAT+GGG + tig0024442:57163-57182 None:intergenic 50.0%
! AGGATATCTGCGCCTTTTCG+GGG + tig0024442:57211-57230 None:intergenic 50.0%
! GAGGATATCTGCGCCTTTTC+GGG + tig0024442:57212-57231 None:intergenic 50.0%
! CGAGGATATCTGCGCCTTTT+CGG + tig0024442:57213-57232 None:intergenic 50.0%
AATGTCTTCGCTTACCCTGG+CGG - tig0024442:57262-57281 Msa1417130:CDS 50.0%
TTCCACCTTGTTCGTGACGA+GGG + tig0024442:57345-57364 None:intergenic 50.0%
ATTCCACCTTGTTCGTGACG+AGG + tig0024442:57346-57365 None:intergenic 50.0%
CTGACGAGATTAGTAGCACC+TGG + tig0024442:57433-57452 None:intergenic 50.0%
!! GGTGCTACTAATCTCGTCAG+TGG - tig0024442:57433-57452 Msa1417130:CDS 50.0%
! TGACCGGTGATGGCAATAAG+AGG + tig0024442:57487-57506 None:intergenic 50.0%
TCTTATTGCCATCACCGGTC+AGG - tig0024442:57486-57505 Msa1417130:CDS 50.0%
TTGCAGATGCTTGGGATGCA+TGG - tig0024442:57958-57977 Msa1417130:CDS 50.0%
TGCAGATGCTTGGGATGCAT+GGG - tig0024442:57959-57978 Msa1417130:CDS 50.0%
!! AGCCTCATGTGTCGGTTTGT+GGG - tig0024442:58139-58158 Msa1417130:CDS 50.0%
TCCTCCGCAGTATGCTATAC+AGG - tig0024442:58308-58327 Msa1417130:CDS 50.0%
ACCTGTATAGCATACTGCGG+AGG + tig0024442:58312-58331 None:intergenic 50.0%
GGGGAGGCTATCATAAGTAC+TGG - tig0024442:58351-58370 Msa1417130:CDS 50.0%
! TGGTTGACTTCTGCTGGTCT+TGG - tig0024442:58432-58451 Msa1417130:CDS 50.0%
CGCTATGGGATTTGGATTGC+CGG - tig0024442:58455-58474 Msa1417130:CDS 50.0%
! AACCACAATAGCGTCGGGAT+TGG + tig0024442:58502-58521 None:intergenic 50.0%
GTGGTTGACATCGATGGTGA+TGG - tig0024442:58516-58535 Msa1417130:CDS 50.0%
GGAGTTGGCTACTATCAAGG+TGG - tig0024442:58560-58579 Msa1417130:CDS 50.0%
ACTTGGGTATGGTTGTCCAG+TGG - tig0024442:58622-58641 Msa1417130:CDS 50.0%
CTTGGGTATGGTTGTCCAGT+GGG - tig0024442:58623-58642 Msa1417130:CDS 50.0%
TATAGAACCGATCCTCCCAC+TGG + tig0024442:58641-58660 None:intergenic 50.0%
CAGGTAGGTGTGAGCTCTAT+TGG + tig0024442:58667-58686 None:intergenic 50.0%
CAATAGAGCTCACACCTACC+TGG - tig0024442:58665-58684 Msa1417130:CDS 50.0%
TGCAGGTGCTTGTGGTATAC+CGG - tig0024442:58734-58753 Msa1417130:CDS 50.0%
GGCAACACATGCTCTTGATG+CGG + tig0024442:58849-58868 None:intergenic 50.0%
GATGTCATAACCGAGGGTGA+TGG - tig0024442:58897-58916 Msa1417130:CDS 50.0%
ACTTATCCTGCCATCACCCT+CGG + tig0024442:58910-58929 None:intergenic 50.0%
! GAACGCGGTTTTTGCAGCAG+TGG + tig0024442:56978-56997 None:intergenic 55.0%
!! GAAGGGAGTGTTTGGGGAAG+TGG + tig0024442:57077-57096 None:intergenic 55.0%
GAGCGGTGGTTGAGCTTGAA+GGG + tig0024442:57094-57113 None:intergenic 55.0%
AGAGCGGTGGTTGAGCTTGA+AGG + tig0024442:57095-57114 None:intergenic 55.0%
!! CGGAGATTTTGAGAGAGCGG+TGG + tig0024442:57108-57127 None:intergenic 55.0%
GAATTGTTGAGGTGGGGGGA+TGG + tig0024442:57164-57183 None:intergenic 55.0%
GGGTTCGTTAGGGGCAAATC+GGG + tig0024442:57191-57210 None:intergenic 55.0%
GGGGTTCGTTAGGGGCAAAT+CGG + tig0024442:57192-57211 None:intergenic 55.0%
!! GCCTTTTCGGGGTTCGTTAG+GGG + tig0024442:57200-57219 None:intergenic 55.0%
!! CGCCTTTTCGGGGTTCGTTA+GGG + tig0024442:57201-57220 None:intergenic 55.0%
! GTCGAAGCACTCGAACGTCA+GGG - tig0024442:57232-57251 Msa1417130:CDS 55.0%
!! TTTCCATTGAAGCGCCGCCA+GGG + tig0024442:57279-57298 None:intergenic 55.0%
!! ATTTCCATTGAAGCGCCGCC+AGG + tig0024442:57280-57299 None:intergenic 55.0%
AGGGAGGACGTTACGAATGG+CGG + tig0024442:57326-57345 None:intergenic 55.0%
ACGAGGGAGGACGTTACGAA+TGG + tig0024442:57329-57348 None:intergenic 55.0%
AGGTGGAATATTCGCTGCCG+AGG - tig0024442:57357-57376 Msa1417130:CDS 55.0%
GGTGGAATATTCGCTGCCGA+GGG - tig0024442:57358-57377 Msa1417130:CDS 55.0%
AAGTGGCGATGCAGACACCA+GGG + tig0024442:57405-57424 None:intergenic 55.0%
GAGATTAGTAGCACCTGGGC+CGG + tig0024442:57428-57447 None:intergenic 55.0%
CAGGTTCCCCGGAGAATGAT+TGG - tig0024442:57505-57524 Msa1417130:CDS 55.0%
!! GTTACCCAAGGCACCGAAAG+AGG - tig0024442:57759-57778 Msa1417130:CDS 55.0%
!! TGTGCCTCTTTCGGTGCCTT+GGG + tig0024442:57766-57785 None:intergenic 55.0%
!! ATGTGCCTCTTTCGGTGCCT+TGG + tig0024442:57767-57786 None:intergenic 55.0%
! GGCACCGAAAGAGGCACATT+TGG - tig0024442:57768-57787 Msa1417130:CDS 55.0%
TCGGGTTACTGGGAAGCTTG+AGG - tig0024442:58050-58069 Msa1417130:CDS 55.0%
! AGCTTGAGGCTTTTGCGAGC+CGG - tig0024442:58064-58083 Msa1417130:CDS 55.0%
!! CAGCCTCATGTGTCGGTTTG+TGG - tig0024442:58138-58157 Msa1417130:CDS 55.0%
!! GCCTCATGTGTCGGTTTGTG+GGG - tig0024442:58140-58159 Msa1417130:CDS 55.0%
TCCCCACAAACCGACACATG+AGG + tig0024442:58144-58163 None:intergenic 55.0%
TGACGAGCTTACCAATGGGG+AGG - tig0024442:58335-58354 Msa1417130:CDS 55.0%
GCAGAAGTCAACCACTGCCT+CGG + tig0024442:58426-58445 None:intergenic 55.0%
! AGGCAGTGGTTGACTTCTGC+TGG - tig0024442:58426-58445 Msa1417130:CDS 55.0%
!! TTCTGCTGGTCTTGGCGCTA+TGG - tig0024442:58440-58459 Msa1417130:CDS 55.0%
!! TCTGCTGGTCTTGGCGCTAT+GGG - tig0024442:58441-58460 Msa1417130:CDS 55.0%
GGTCTTGGCGCTATGGGATT+TGG - tig0024442:58447-58466 Msa1417130:CDS 55.0%
! ATTTGGATTGCCGGCTGCCA+TGG - tig0024442:58464-58483 Msa1417130:CDS 55.0%
! TTTGGATTGCCGGCTGCCAT+GGG - tig0024442:58465-58484 Msa1417130:CDS 55.0%
ATTGGCAACAGCAGCTCCCA+TGG + tig0024442:58484-58503 None:intergenic 55.0%
TGCCAATCCCGACGCTATTG+TGG - tig0024442:58497-58516 Msa1417130:CDS 55.0%
TGGTTGTCCAGTGGGAGGAT+CGG - tig0024442:58631-58650 Msa1417130:CDS 55.0%
CTCTTTGTCACACGAGCTGC+CGG + tig0024442:58756-58775 None:intergenic 55.0%
GGCAGCTCGTGTGACAAAGA+GGG - tig0024442:58755-58774 Msa1417130:CDS 55.0%
ATCAAGAAGGTAGGGGCCAG+GGG + tig0024442:58817-58836 None:intergenic 55.0%
CATCAAGAAGGTAGGGGCCA+GGG + tig0024442:58818-58837 None:intergenic 55.0%
ACATCAAGAAGGTAGGGGCC+AGG + tig0024442:58819-58838 None:intergenic 55.0%
! TCATAACCGAGGGTGATGGC+AGG - tig0024442:58901-58920 Msa1417130:CDS 55.0%
! GAACGCGGTTTTTGCAGCAG+TGG + tig0024442:56978-56997 None:intergenic 55.0%
!! GAAGGGAGTGTTTGGGGAAG+TGG + tig0024442:57077-57096 None:intergenic 55.0%
GAGCGGTGGTTGAGCTTGAA+GGG + tig0024442:57094-57113 None:intergenic 55.0%
AGAGCGGTGGTTGAGCTTGA+AGG + tig0024442:57095-57114 None:intergenic 55.0%
!! CGGAGATTTTGAGAGAGCGG+TGG + tig0024442:57108-57127 None:intergenic 55.0%
GAATTGTTGAGGTGGGGGGA+TGG + tig0024442:57164-57183 None:intergenic 55.0%
GGGTTCGTTAGGGGCAAATC+GGG + tig0024442:57191-57210 None:intergenic 55.0%
GGGGTTCGTTAGGGGCAAAT+CGG + tig0024442:57192-57211 None:intergenic 55.0%
!! GCCTTTTCGGGGTTCGTTAG+GGG + tig0024442:57200-57219 None:intergenic 55.0%
!! CGCCTTTTCGGGGTTCGTTA+GGG + tig0024442:57201-57220 None:intergenic 55.0%
! GTCGAAGCACTCGAACGTCA+GGG - tig0024442:57232-57251 Msa1417130:CDS 55.0%
!! TTTCCATTGAAGCGCCGCCA+GGG + tig0024442:57279-57298 None:intergenic 55.0%
!! ATTTCCATTGAAGCGCCGCC+AGG + tig0024442:57280-57299 None:intergenic 55.0%
AGGGAGGACGTTACGAATGG+CGG + tig0024442:57326-57345 None:intergenic 55.0%
ACGAGGGAGGACGTTACGAA+TGG + tig0024442:57329-57348 None:intergenic 55.0%
AGGTGGAATATTCGCTGCCG+AGG - tig0024442:57357-57376 Msa1417130:CDS 55.0%
GGTGGAATATTCGCTGCCGA+GGG - tig0024442:57358-57377 Msa1417130:CDS 55.0%
AAGTGGCGATGCAGACACCA+GGG + tig0024442:57405-57424 None:intergenic 55.0%
GAGATTAGTAGCACCTGGGC+CGG + tig0024442:57428-57447 None:intergenic 55.0%
CAGGTTCCCCGGAGAATGAT+TGG - tig0024442:57505-57524 Msa1417130:CDS 55.0%
!! GTTACCCAAGGCACCGAAAG+AGG - tig0024442:57759-57778 Msa1417130:CDS 55.0%
!! TGTGCCTCTTTCGGTGCCTT+GGG + tig0024442:57766-57785 None:intergenic 55.0%
!! ATGTGCCTCTTTCGGTGCCT+TGG + tig0024442:57767-57786 None:intergenic 55.0%
! GGCACCGAAAGAGGCACATT+TGG - tig0024442:57768-57787 Msa1417130:CDS 55.0%
TCGGGTTACTGGGAAGCTTG+AGG - tig0024442:58050-58069 Msa1417130:CDS 55.0%
! AGCTTGAGGCTTTTGCGAGC+CGG - tig0024442:58064-58083 Msa1417130:CDS 55.0%
!! CAGCCTCATGTGTCGGTTTG+TGG - tig0024442:58138-58157 Msa1417130:CDS 55.0%
!! GCCTCATGTGTCGGTTTGTG+GGG - tig0024442:58140-58159 Msa1417130:CDS 55.0%
TCCCCACAAACCGACACATG+AGG + tig0024442:58144-58163 None:intergenic 55.0%
TGACGAGCTTACCAATGGGG+AGG - tig0024442:58335-58354 Msa1417130:CDS 55.0%
GCAGAAGTCAACCACTGCCT+CGG + tig0024442:58426-58445 None:intergenic 55.0%
! AGGCAGTGGTTGACTTCTGC+TGG - tig0024442:58426-58445 Msa1417130:CDS 55.0%
!! TTCTGCTGGTCTTGGCGCTA+TGG - tig0024442:58440-58459 Msa1417130:CDS 55.0%
!! TCTGCTGGTCTTGGCGCTAT+GGG - tig0024442:58441-58460 Msa1417130:CDS 55.0%
GGTCTTGGCGCTATGGGATT+TGG - tig0024442:58447-58466 Msa1417130:CDS 55.0%
! ATTTGGATTGCCGGCTGCCA+TGG - tig0024442:58464-58483 Msa1417130:CDS 55.0%
! TTTGGATTGCCGGCTGCCAT+GGG - tig0024442:58465-58484 Msa1417130:CDS 55.0%
ATTGGCAACAGCAGCTCCCA+TGG + tig0024442:58484-58503 None:intergenic 55.0%
TGCCAATCCCGACGCTATTG+TGG - tig0024442:58497-58516 Msa1417130:CDS 55.0%
TGGTTGTCCAGTGGGAGGAT+CGG - tig0024442:58631-58650 Msa1417130:CDS 55.0%
CTCTTTGTCACACGAGCTGC+CGG + tig0024442:58756-58775 None:intergenic 55.0%
GGCAGCTCGTGTGACAAAGA+GGG - tig0024442:58755-58774 Msa1417130:CDS 55.0%
ATCAAGAAGGTAGGGGCCAG+GGG + tig0024442:58817-58836 None:intergenic 55.0%
CATCAAGAAGGTAGGGGCCA+GGG + tig0024442:58818-58837 None:intergenic 55.0%
ACATCAAGAAGGTAGGGGCC+AGG + tig0024442:58819-58838 None:intergenic 55.0%
! TCATAACCGAGGGTGATGGC+AGG - tig0024442:58901-58920 Msa1417130:CDS 55.0%
GCCCCTAACGAACCCCGAAA+AGG - tig0024442:57196-57215 Msa1417130:CDS 60.0%
!! GCGCCTTTTCGGGGTTCGTT+AGG + tig0024442:57202-57221 None:intergenic 60.0%
GACGTTCGAGTGCTTCGACG+AGG + tig0024442:57231-57250 None:intergenic 60.0%
! CGTCGAAGCACTCGAACGTC+AGG - tig0024442:57231-57250 Msa1417130:CDS 60.0%
TTACCCTGGCGGCGCTTCAA+TGG - tig0024442:57273-57292 Msa1417130:CDS 60.0%
GAGGACGTTACGAATGGCGG+TGG + tig0024442:57323-57342 None:intergenic 60.0%
GTCCTCCCTCGTCACGAACA+AGG - tig0024442:57337-57356 Msa1417130:CDS 60.0%
CACCTTGTTCGTGACGAGGG+AGG + tig0024442:57342-57361 None:intergenic 60.0%
CTCCCTCGTCACGAACAAGG+TGG - tig0024442:57340-57359 Msa1417130:CDS 60.0%
GGAGGAACGAGCGTAACCCT+CGG + tig0024442:57377-57396 None:intergenic 60.0%
GAGGGTTACGCTCGTTCCTC+CGG - tig0024442:57376-57395 Msa1417130:CDS 60.0%
GATGCAGACACCAGGGAGAC+CGG + tig0024442:57398-57417 None:intergenic 60.0%
GAAGTGGCGATGCAGACACC+AGG + tig0024442:57406-57425 None:intergenic 60.0%
GGTGTCTGCATCGCCACTTC+CGG - tig0024442:57406-57425 Msa1417130:CDS 60.0%
CATTCTCCGGGGAACCTGAC+CGG + tig0024442:57503-57522 None:intergenic 60.0%
! GCTTGAGGCTTTTGCGAGCC+GGG - tig0024442:58065-58084 Msa1417130:CDS 60.0%
GGTACAAGAGACCGAGGCAG+TGG - tig0024442:58412-58431 Msa1417130:CDS 60.0%
GGGTATGGTTGTCCAGTGGG+AGG - tig0024442:58626-58645 Msa1417130:CDS 60.0%
ATTGGCTGGGTCTCCCAGGT+AGG + tig0024442:58682-58701 None:intergenic 60.0%
! TCTCATTGGCTGGGTCTCCC+AGG + tig0024442:58686-58705 None:intergenic 60.0%
CGGCAGCTCGTGTGACAAAG+AGG - tig0024442:58754-58773 Msa1417130:CDS 60.0%
GCCCCTAACGAACCCCGAAA+AGG - tig0024442:57196-57215 Msa1417130:CDS 60.0%
!! GCGCCTTTTCGGGGTTCGTT+AGG + tig0024442:57202-57221 None:intergenic 60.0%
GACGTTCGAGTGCTTCGACG+AGG + tig0024442:57231-57250 None:intergenic 60.0%
! CGTCGAAGCACTCGAACGTC+AGG - tig0024442:57231-57250 Msa1417130:CDS 60.0%
TTACCCTGGCGGCGCTTCAA+TGG - tig0024442:57273-57292 Msa1417130:CDS 60.0%
GAGGACGTTACGAATGGCGG+TGG + tig0024442:57323-57342 None:intergenic 60.0%
GTCCTCCCTCGTCACGAACA+AGG - tig0024442:57337-57356 Msa1417130:CDS 60.0%
CACCTTGTTCGTGACGAGGG+AGG + tig0024442:57342-57361 None:intergenic 60.0%
CTCCCTCGTCACGAACAAGG+TGG - tig0024442:57340-57359 Msa1417130:CDS 60.0%
GGAGGAACGAGCGTAACCCT+CGG + tig0024442:57377-57396 None:intergenic 60.0%
GAGGGTTACGCTCGTTCCTC+CGG - tig0024442:57376-57395 Msa1417130:CDS 60.0%
GATGCAGACACCAGGGAGAC+CGG + tig0024442:57398-57417 None:intergenic 60.0%
GAAGTGGCGATGCAGACACC+AGG + tig0024442:57406-57425 None:intergenic 60.0%
GGTGTCTGCATCGCCACTTC+CGG - tig0024442:57406-57425 Msa1417130:CDS 60.0%
CATTCTCCGGGGAACCTGAC+CGG + tig0024442:57503-57522 None:intergenic 60.0%
! GCTTGAGGCTTTTGCGAGCC+GGG - tig0024442:58065-58084 Msa1417130:CDS 60.0%
GGTACAAGAGACCGAGGCAG+TGG - tig0024442:58412-58431 Msa1417130:CDS 60.0%
GGGTATGGTTGTCCAGTGGG+AGG - tig0024442:58626-58645 Msa1417130:CDS 60.0%
ATTGGCTGGGTCTCCCAGGT+AGG + tig0024442:58682-58701 None:intergenic 60.0%
! TCTCATTGGCTGGGTCTCCC+AGG + tig0024442:58686-58705 None:intergenic 60.0%
CGGCAGCTCGTGTGACAAAG+AGG - tig0024442:58754-58773 Msa1417130:CDS 60.0%
TTGAGGTGGGGGGATGGGAG+TGG + tig0024442:57158-57177 None:intergenic 65.0%
AGTAGCACCTGGGCCGGAAG+TGG + tig0024442:57422-57441 None:intergenic 65.0%
CCATCACCGGTCAGGTTCCC+CGG - tig0024442:57494-57513 Msa1417130:CDS 65.0%
ACAGCAGCTCCCATGGCAGC+CGG + tig0024442:58477-58496 None:intergenic 65.0%
TTGAGGTGGGGGGATGGGAG+TGG + tig0024442:57158-57177 None:intergenic 65.0%
AGTAGCACCTGGGCCGGAAG+TGG + tig0024442:57422-57441 None:intergenic 65.0%
CCATCACCGGTCAGGTTCCC+CGG - tig0024442:57494-57513 Msa1417130:CDS 65.0%
ACAGCAGCTCCCATGGCAGC+CGG + tig0024442:58477-58496 None:intergenic 65.0%
GCTCGTTCCTCCGGTCTCCC+TGG - tig0024442:57385-57404 Msa1417130:CDS 70.0%
GCAGACACCAGGGAGACCGG+AGG + tig0024442:57395-57414 None:intergenic 70.0%
TGCATCGCCACTTCCGGCCC+AGG - tig0024442:57412-57431 Msa1417130:CDS 70.0%
CCGGGGAACCTGACCGGTGA+TGG + tig0024442:57497-57516 None:intergenic 70.0%
GCTCGTTCCTCCGGTCTCCC+TGG - tig0024442:57385-57404 Msa1417130:CDS 70.0%
GCAGACACCAGGGAGACCGG+AGG + tig0024442:57395-57414 None:intergenic 70.0%
TGCATCGCCACTTCCGGCCC+AGG - tig0024442:57412-57431 Msa1417130:CDS 70.0%
CCGGGGAACCTGACCGGTGA+TGG + tig0024442:57497-57516 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0024442 gene 56968 58935 56968 ID=Msa1417130;Name=Msa1417130
tig0024442 mRNA 56968 58935 56968 ID=Msa1417130-mRNA-1;Parent=Msa1417130;Name=Msa1417130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|655
tig0024442 exon 56968 58935 56968 ID=Msa1417130-mRNA-1:exon:23232;Parent=Msa1417130-mRNA-1
tig0024442 CDS 56968 58935 56968 ID=Msa1417130-mRNA-1:cds;Parent=Msa1417130-mRNA-1
Gene Sequence

>Msa1417130

ATGGCAGCCACTGCTGCAAAAACCGCGTTCACAACCACCATCTCTTCATCTTCACCACAATCACTTCCAAACCAAAACCACGTTTTCAGAATCACTTACCCATTTTCCACTTCCCCAAACACTCCCTTCAAGCTCAACCACCGCTCTCTCAAAATCTCCGCTTCCATCTCCAACCCTACTCAAAAAACCACTCCCATCCCCCCACCTCAACAATTCATTTCCCGATTTGCCCCTAACGAACCCCGAAAAGGCGCAGATATCCTCGTCGAAGCACTCGAACGTCAGGGAGTTACAAATGTCTTCGCTTACCCTGGCGGCGCTTCAATGGAAATTCATCAAGCACTCACGCGCTCCACCGCCATTCGTAACGTCCTCCCTCGTCACGAACAAGGTGGAATATTCGCTGCCGAGGGTTACGCTCGTTCCTCCGGTCTCCCTGGTGTCTGCATCGCCACTTCCGGCCCAGGTGCTACTAATCTCGTCAGTGGACTTGCTGATGCTATGCTTGACAGTGTTCCTCTTATTGCCATCACCGGTCAGGTTCCCCGGAGAATGATTGGTACTGATGCTTTTCAAGAAACTCCGATTGTTGAGGTAACTAGATCAATCACCAAGCATAATTATCTTGTTCTTGATGTTGATGATATACCTAGGATAGTGAATGAAGCGTTTTTATTAGCTTCTAGTGGTAGACCTGGACCTGTTTTGATCGATATACCTAAGGATATTCAGCAACAGGTTTCTGTTCCGAATTGGGATCAACCTATTAGGTTAACTGGGTATATGAATAGGTTACCCAAGGCACCGAAAGAGGCACATTTGGAACAGATTGTGAGGTTGTTATTGGAGTCTAAGAAACCTGTTTTGTATGTTGGTGGTGGTAGTTTGAATTGTAGCGAGGAATTGAGGCGGTTTGTTGAGTTAACCGGTGTACCTGTTGCTAGTACTTTGATGGGGTTGGGTTCCTATCCTAGTTCGGATGAGAATTCGTTGCAGATGCTTGGGATGCATGGGACTGTTTATGCTAATTATGCGGTTGATAAGAGTGATCTTTTGCTTGCGTTTGGGGTTAGGTTTGATGATCGGGTTACTGGGAAGCTTGAGGCTTTTGCGAGCCGGGCGAAGATTGTTCATATTGATATTGATGCTGCTGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTTTGTGGGGATTTGAAGTTGGCTTTGAAGGGGATCAATCGAATTTTGGAGAGTAATGGGATAGAGAGTAAGCTTGATTTCGGAGGTTGGAGAGAAGAACTGAATGATCAGAAAGTTAGGTTTCCGATGAGTTATAAGAAGTTTGATGAAGCTATTCCTCCGCAGTATGCTATACAGGTTCTTGACGAGCTTACCAATGGGGAGGCTATCATAAGTACTGGTGTTGGACAACATCAGATGTGGGCTGCTCAGTTTTATAGGTACAAGAGACCGAGGCAGTGGTTGACTTCTGCTGGTCTTGGCGCTATGGGATTTGGATTGCCGGCTGCCATGGGAGCTGCTGTTGCCAATCCCGACGCTATTGTGGTTGACATCGATGGTGATGGAAGCTTTATGATGAATGTTCAGGAGTTGGCTACTATCAAGGTGGAGAATCTCCCTGTTAAGATATTGTTGTTGAACAATCAACACTTGGGTATGGTTGTCCAGTGGGAGGATCGGTTCTATAAAGCCAATAGAGCTCACACCTACCTGGGAGACCCAGCCAATGAGAAAGAAATATTCCCCAATATGTTGAAGTTTGCAGGTGCTTGTGGTATACCGGCAGCTCGTGTGACAAAGAGGGCAGACCTTAGAGCAGCGATTCAGAAAATGTTAGATACCCCTGGCCCCTACCTTCTTGATGTCATTGTACCGCATCAAGAGCATGTGTTGCCAATGATTCCTGCAAATGGATCCTTTGAGGATGTCATAACCGAGGGTGATGGCAGGATAAGTTACTGA
Protein sequence

>Msa1417130

MAATAAKTAFTTTISSSSPQSLPNQNHVFRITYPFSTSPNTPFKLNHRSLKISASISNPTQKTTPIPPPQQFISRFAPNEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSTAIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADAMLDSVPLIAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVNEAFLLASSGRPGPVLIDIPKDIQQQVSVPNWDQPIRLTGYMNRLPKAPKEAHLEQIVRLLLESKKPVLYVGGGSLNCSEELRRFVELTGVPVASTLMGLGSYPSSDENSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDAAEIGKNKQPHVSVCGDLKLALKGINRILESNGIESKLDFGGWREELNDQKVRFPMSYKKFDEAIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYRYKRPRQWLTSAGLGAMGFGLPAAMGAAVANPDAIVVDIDGDGSFMMNVQELATIKVENLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPANEKEIFPNMLKFAGACGIPAARVTKRADLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPANGSFEDVITEGDGRISY*