AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0233790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233790 MtrunA17_Chr2g0281881 98.015 655 13 0 1 655 1 655 0.0 1328
Msa0233790 MtrunA17_Chr3g0132201 80.892 628 114 3 31 655 27 651 0.0 1067
Msa0233790 MtrunA17_Chr2g0290681 73.520 608 156 2 27 633 10 613 0.0 946
Msa0233790 MtrunA17_Chr6g0449041 24.644 491 330 11 84 550 6 480 5.96e-35 140
Msa0233790 MtrunA17_Chr5g0420011 22.325 542 377 17 52 574 19 535 1.69e-15 80.1
Msa0233790 MtrunA17_Chr4g0007071 22.202 545 374 17 52 574 19 535 1.88e-15 80.1
Msa0233790 MtrunA17_Chr2g0283471 21.942 515 340 17 88 572 26 508 4.87e-14 75.5
Msa0233790 MtrunA17_Chr7g0242961 22.656 512 344 16 88 574 47 531 3.92e-13 72.4
Msa0233790 MtrunA17_Chr7g0242981 23.034 534 345 18 63 574 28 517 4.81e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233790 AT3G48560.1 83.788 586 95 0 70 655 85 670 0.0 1046
Msa0233790 AT5G17380.1 27.328 494 309 12 84 550 14 484 8.58e-47 174
Msa0233790 AT5G01330.1 24.237 524 321 17 88 574 36 520 8.05e-20 94.4
Msa0233790 AT5G01320.1 22.562 523 331 15 88 574 47 531 1.23e-17 87.4
Msa0233790 AT4G33070.1 22.328 524 331 15 88 574 51 535 1.95e-16 83.6
Msa0233790 AT5G54960.1 21.782 505 353 14 88 572 51 533 1.29e-15 80.9

Find 215 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGGGATCAATCGAATTT+TGG 0.232600 2_2:+6189003 Msa0233790:CDS
CCCAATATGTTGAAGTTTGC+AGG 0.240705 2_2:+6189541 Msa0233790:CDS
GATCAACCTATTAGGTTAAC+TGG 0.252439 2_2:+6188548 Msa0233790:CDS
AATATTTCTTTCTCATTGGC+TGG 0.252481 2_2:-6189517 None:intergenic
TTGAGCTTGAAGGGAGTGTT+TGG 0.263351 2_2:-6187906 None:intergenic
TTCAACAACAATATCTTAAC+AGG 0.266547 2_2:-6189415 None:intergenic
GTGTTTGGGGAAGTGGAAAA+TGG 0.269439 2_2:-6187891 None:intergenic
CGCTATGGGATTTGGATTGC+CGG 0.275397 2_2:+6189279 Msa0233790:CDS
ACCTGCAAACTTCAACATAT+TGG 0.275568 2_2:-6189542 None:intergenic
CGAATTGGGATCAACCTATT+AGG 0.276452 2_2:+6188540 Msa0233790:CDS
ACAGATTGTGAGGTTGTTAT+TGG 0.278604 2_2:+6188616 Msa0233790:CDS
GGTCTTGGCGCTATGGGATT+TGG 0.283365 2_2:+6189271 Msa0233790:CDS
AGGTTTGATGATCGGGTTAC+TGG 0.289362 2_2:+6188863 Msa0233790:CDS
CCTGCAAACTTCAACATATT+GGG 0.314608 2_2:-6189541 None:intergenic
CAGGTAGGTGTGAGCTCTAT+TGG 0.318135 2_2:-6189488 None:intergenic
TGCTAGTACTTTGATGGGGT+TGG 0.322703 2_2:+6188730 Msa0233790:CDS
AACAGGTTTCTGTTCCGAAT+TGG 0.337313 2_2:+6188525 Msa0233790:CDS
TGTTCCAAATGTGCCTCTTT+CGG 0.341709 2_2:-6188596 None:intergenic
ATATACCCAGTTAACCTAAT+AGG 0.345011 2_2:-6188554 None:intergenic
ATTTGGATTGCCGGCTGCCA+TGG 0.358680 2_2:+6189288 Msa0233790:CDS
GGGGAATATTTCTTTCTCAT+TGG 0.363131 2_2:-6189521 None:intergenic
GGCACCGAAAGAGGCACATT+TGG 0.369187 2_2:+6188592 Msa0233790:CDS
GATCCATTTGCAGGAATCAT+TGG 0.370032 2_2:-6189691 None:intergenic
TGAGCTTGAAGGGAGTGTTT+GGG 0.371196 2_2:-6187905 None:intergenic
TGATTCTGAAAACGTGGTTT+TGG 0.372112 2_2:-6187863 None:intergenic
GGATTTGAAGTTGGCTTTGA+AGG 0.374802 2_2:+6188985 Msa0233790:CDS
ACCTGTTGCTAGTACTTTGA+TGG 0.375227 2_2:+6188724 Msa0233790:CDS
GAAGGGAGTGTTTGGGGAAG+TGG 0.375779 2_2:-6187898 None:intergenic
CAGCCTCATGTGTCGGTTTG+TGG 0.375821 2_2:+6188962 Msa0233790:CDS
AAGCTTTATGATGAATGTTC+AGG 0.379274 2_2:+6189363 Msa0233790:CDS
ACAGGTTTCTGTTCCGAATT+GGG 0.386257 2_2:+6188526 Msa0233790:CDS
TCCTCAAAGGATCCATTTGC+AGG 0.389166 2_2:-6189700 None:intergenic
ATGTGCCTCTTTCGGTGCCT+TGG 0.389362 2_2:-6188588 None:intergenic
ACCTAAGGATATTCAGCAAC+AGG 0.392227 2_2:+6188508 Msa0233790:CDS
GGTTAACTGGGTATATGAAT+AGG 0.392870 2_2:+6188561 Msa0233790:CDS
TTCTGCTGGTCTTGGCGCTA+TGG 0.393331 2_2:+6189264 Msa0233790:CDS
ACAGCAGCTCCCATGGCAGC+CGG 0.395329 2_2:-6189298 None:intergenic
GATATTGATGCTGCTGAGAT+TGG 0.396931 2_2:+6188929 Msa0233790:CDS
TGGGGTTAGGTTTGATGATC+GGG 0.402613 2_2:+6188856 Msa0233790:CDS
GGTGTCTGCATCGCCACTTC+CGG 0.403895 2_2:+6188230 Msa0233790:CDS
CGTCGAAGCACTCGAACGTC+AGG 0.404386 2_2:+6188055 Msa0233790:CDS
GGGTTCGTTAGGGGCAAATC+GGG 0.405793 2_2:-6188012 None:intergenic
GCTAGTACTTTGATGGGGTT+GGG 0.408704 2_2:+6188731 Msa0233790:CDS
TGGTTGACTTCTGCTGGTCT+TGG 0.411154 2_2:+6189256 Msa0233790:CDS
ATAGAGAGTAAGCTTGATTT+CGG 0.412100 2_2:+6189037 Msa0233790:CDS
GAGAATTCGTTGCAGATGCT+TGG 0.413491 2_2:+6188773 Msa0233790:CDS
AACTGAATGATCAGAAAGTT+AGG 0.416856 2_2:+6189074 Msa0233790:CDS
AGCCTCATGTGTCGGTTTGT+GGG 0.418936 2_2:+6188963 Msa0233790:CDS
TTGGGGTTAGGTTTGATGAT+CGG 0.419793 2_2:+6188855 Msa0233790:CDS
TGTGCCTCTTTCGGTGCCTT+GGG 0.420636 2_2:-6188587 None:intergenic
AGGCGGTTTGTTGAGTTAAC+CGG 0.420654 2_2:+6188698 Msa0233790:CDS
GGGGTTCGTTAGGGGCAAAT+CGG 0.423916 2_2:-6188013 None:intergenic
TCCTCCGCAGTATGCTATAC+AGG 0.426227 2_2:+6189132 Msa0233790:CDS
TGCATCGCCACTTCCGGCCC+AGG 0.426512 2_2:+6188236 Msa0233790:CDS
ATTTCCATTGAAGCGCCGCC+AGG 0.431656 2_2:-6188101 None:intergenic
CCATCACCGGTCAGGTTCCC+CGG 0.439113 2_2:+6188318 Msa0233790:CDS
TCTTATTGCCATCACCGGTC+AGG 0.440205 2_2:+6188310 Msa0233790:CDS
TCTGCTGGTCTTGGCGCTAT+GGG 0.442287 2_2:+6189265 Msa0233790:CDS
GCTCGTTCCTCCGGTCTCCC+TGG 0.442490 2_2:+6188209 Msa0233790:CDS
CAATAGAGCTCACACCTACC+TGG 0.446335 2_2:+6189489 Msa0233790:CDS
TTTGGATTGCCGGCTGCCAT+GGG 0.447144 2_2:+6189289 Msa0233790:CDS
GATTTGAAGTTGGCTTTGAA+GGG 0.448952 2_2:+6188986 Msa0233790:CDS
TCTCATTGGCTGGGTCTCCC+AGG 0.453592 2_2:-6189507 None:intergenic
CCTGTTGCTAGTACTTTGAT+GGG 0.454512 2_2:+6188725 Msa0233790:CDS
GTTGGGTTCCTATCCTAGTT+CGG 0.456275 2_2:+6188748 Msa0233790:CDS
TGTTTGGGGAAGTGGAAAAT+GGG 0.456756 2_2:-6187890 None:intergenic
TGCAGGTGCTTGTGGTATAC+CGG 0.457670 2_2:+6189558 Msa0233790:CDS
CATCAAGAAGGTAGGGGCCA+GGG 0.457929 2_2:-6189639 None:intergenic
ACATCAAGAAGGTAGGGGCC+AGG 0.461753 2_2:-6189640 None:intergenic
CATCAGTACCAATCATTCTC+CGG 0.464538 2_2:-6188337 None:intergenic
TATGATGAATGTTCAGGAGT+TGG 0.465434 2_2:+6189369 Msa0233790:CDS
CAGGTTCCCCGGAGAATGAT+TGG 0.466447 2_2:+6188329 Msa0233790:CDS
ATCAGTACCAATCATTCTCC+GGG 0.467400 2_2:-6188336 None:intergenic
CCGGGGAACCTGACCGGTGA+TGG 0.468521 2_2:-6188318 None:intergenic
TTAGGTATATCGATCAAAAC+AGG 0.472536 2_2:-6188491 None:intergenic
AGTAGGGTTGGAGATGGAAG+CGG 0.473325 2_2:-6187949 None:intergenic
TTGCAGATGCTTGGGATGCA+TGG 0.475365 2_2:+6188782 Msa0233790:CDS
CCCATCAAAGTACTAGCAAC+AGG 0.475566 2_2:-6188725 None:intergenic
TTACCCTGGCGGCGCTTCAA+TGG 0.476078 2_2:+6188097 Msa0233790:CDS
AACCACAATAGCGTCGGGAT+TGG 0.482109 2_2:-6189323 None:intergenic
GTAAGCTTGATTTCGGAGGT+TGG 0.484920 2_2:+6189044 Msa0233790:CDS
AGGCAGTGGTTGACTTCTGC+TGG 0.485926 2_2:+6189250 Msa0233790:CDS
CTAATAGGTTGATCCCAATT+CGG 0.489964 2_2:-6188539 None:intergenic
TTCTTGACGAGCTTACCAAT+GGG 0.490237 2_2:+6189155 Msa0233790:CDS
TTGCCAATGATTCCTGCAAA+TGG 0.490698 2_2:+6189688 Msa0233790:CDS
GATGCAGACACCAGGGAGAC+CGG 0.491267 2_2:-6188219 None:intergenic
ATATTTCTTTCTCATTGGCT+GGG 0.491931 2_2:-6189516 None:intergenic
GAGGGTTACGCTCGTTCCTC+CGG 0.496778 2_2:+6188200 Msa0233790:CDS
CTCTTTGTCACACGAGCTGC+CGG 0.502154 2_2:-6189577 None:intergenic
CCACCACCAACATACAAAAC+AGG 0.502296 2_2:-6188650 None:intergenic
AGTAGCACCTGGGCCGGAAG+TGG 0.502445 2_2:-6188243 None:intergenic
TCCTGCAAATGGATCCTTTG+AGG 0.504950 2_2:+6189699 Msa0233790:CDS
AGAATTCGTTGCAGATGCTT+GGG 0.506752 2_2:+6188774 Msa0233790:CDS
GAAGTGGCGATGCAGACACC+AGG 0.511122 2_2:-6188227 None:intergenic
AGAGCGGTGGTTGAGCTTGA+AGG 0.511308 2_2:-6187916 None:intergenic
GGTTTGTGGGGATTTGAAGT+TGG 0.511799 2_2:+6188976 Msa0233790:CDS
ACCTGTTGCTGAATATCCTT+AGG 0.511983 2_2:-6188509 None:intergenic
TGACCGGTGATGGCAATAAG+AGG 0.515800 2_2:-6188308 None:intergenic
GCCCCTAACGAACCCCGAAA+AGG 0.516458 2_2:+6188020 Msa0233790:CDS
GATCTAGTTACCTCAACAAT+CGG 0.519783 2_2:-6188374 None:intergenic
TGAATTGTAGCGAGGAATTG+AGG 0.520671 2_2:+6188678 Msa0233790:CDS
TCAAACTTCTTATAACTCAT+CGG 0.521295 2_2:-6189100 None:intergenic
ATATTGATGCTGCTGAGATT+GGG 0.522267 2_2:+6188930 Msa0233790:CDS
ATTGGCAACAGCAGCTCCCA+TGG 0.524757 2_2:-6189305 None:intergenic
TCAGGAGTTGGCTACTATCA+AGG 0.529463 2_2:+6189381 Msa0233790:CDS
CATTCTCCGGGGAACCTGAC+CGG 0.531322 2_2:-6188324 None:intergenic
GTTCTTGACGAGCTTACCAA+TGG 0.533777 2_2:+6189154 Msa0233790:CDS
GGGGAGGCTATCATAAGTAC+TGG 0.534253 2_2:+6189175 Msa0233790:CDS
GCCTCATGTGTCGGTTTGTG+GGG 0.534297 2_2:+6188964 Msa0233790:CDS
AACGCTTCATTCACTATCCT+AGG 0.535019 2_2:-6188440 None:intergenic
GGGAAATGAATTGTTGAGGT+GGG 0.536278 2_2:-6187992 None:intergenic
GAGCGGTGGTTGAGCTTGAA+GGG 0.536459 2_2:-6187915 None:intergenic
CTGACGAGATTAGTAGCACC+TGG 0.538331 2_2:-6188254 None:intergenic
ATTGGCTGGGTCTCCCAGGT+AGG 0.539147 2_2:-6189503 None:intergenic
TTGAAGTTTGCAGGTGCTTG+TGG 0.539914 2_2:+6189550 Msa0233790:CDS
ACAAATGTCTTCGCTTACCC+TGG 0.542915 2_2:+6188083 Msa0233790:CDS
ATCAAGAAGGTAGGGGCCAG+GGG 0.543925 2_2:-6189638 None:intergenic
ACAATGACATCAAGAAGGTA+GGG 0.544765 2_2:-6189646 None:intergenic
ATATCGATCAAAACAGGTCC+AGG 0.546128 2_2:-6188485 None:intergenic
TCAAGAAACTCCGATTGTTG+AGG 0.547823 2_2:+6188364 Msa0233790:CDS
CTTGGGTATGGTTGTCCAGT+GGG 0.549540 2_2:+6189447 Msa0233790:CDS
GTTGTTGAACAATCAACACT+TGG 0.549760 2_2:+6189429 Msa0233790:CDS
GTTACCCAAGGCACCGAAAG+AGG 0.549898 2_2:+6188583 Msa0233790:CDS
GAAATGAATTGTTGAGGTGG+GGG 0.552213 2_2:-6187990 None:intergenic
ATGTCAACCACAATAGCGTC+GGG 0.553806 2_2:-6189328 None:intergenic
GTTCCTCTTATTGCCATCAC+CGG 0.554774 2_2:+6188305 Msa0233790:CDS
ATTCTCATCCGAACTAGGAT+AGG 0.554840 2_2:-6188756 None:intergenic
CACATTTGGAACAGATTGTG+AGG 0.555893 2_2:+6188606 Msa0233790:CDS
AACGAATTCTCATCCGAACT+AGG 0.556901 2_2:-6188761 None:intergenic
GAGATTAGTAGCACCTGGGC+CGG 0.558857 2_2:-6188249 None:intergenic
AAGAACAAGATAATTATGCT+TGG 0.559558 2_2:-6188402 None:intergenic
GGTACAAGAGACCGAGGCAG+TGG 0.562380 2_2:+6189236 Msa0233790:CDS
TGCAGATGCTTGGGATGCAT+GGG 0.563717 2_2:+6188783 Msa0233790:CDS
AAATGAATTGTTGAGGTGGG+GGG 0.565609 2_2:-6187989 None:intergenic
GAGGACGTTACGAATGGCGG+TGG 0.567894 2_2:-6188144 None:intergenic
GCAGAAGTCAACCACTGCCT+CGG 0.568184 2_2:-6189247 None:intergenic
CAGAAAATGTTAGATACCCC+TGG 0.568513 2_2:+6189622 Msa0233790:CDS
ATTTGAAGTTGGCTTTGAAG+GGG 0.570043 2_2:+6188987 Msa0233790:CDS
CAATATGAACAATCTTCGCC+CGG 0.571633 2_2:-6188907 None:intergenic
ACTTATCCTGCCATCACCCT+CGG 0.572531 2_2:-6189731 None:intergenic
GGAAATGAATTGTTGAGGTG+GGG 0.573854 2_2:-6187991 None:intergenic
TACAATGACATCAAGAAGGT+AGG 0.574462 2_2:-6189647 None:intergenic
TCATAACCGAGGGTGATGGC+AGG 0.574956 2_2:+6189725 Msa0233790:CDS
TGGTTGTCCAGTGGGAGGAT+CGG 0.577376 2_2:+6189455 Msa0233790:CDS
GAGCTTGAAGGGAGTGTTTG+GGG 0.580053 2_2:-6187904 None:intergenic
GAACAATCAACACTTGGGTA+TGG 0.580544 2_2:+6189435 Msa0233790:CDS
TATAGAACCGATCCTCCCAC+TGG 0.583559 2_2:-6189462 None:intergenic
TTAGCTTCTAGTGGTAGACC+TGG 0.583844 2_2:+6188467 Msa0233790:CDS
CTCGGTTATGACATCCTCAA+AGG 0.584779 2_2:-6189713 None:intergenic
GGGTATGGTTGTCCAGTGGG+AGG 0.585047 2_2:+6189450 Msa0233790:CDS
CGGCAGCTCGTGTGACAAAG+AGG 0.586144 2_2:+6189578 Msa0233790:CDS
CGGGAAATGAATTGTTGAGG+TGG 0.587217 2_2:-6187993 None:intergenic
AGGTGGAATATTCGCTGCCG+AGG 0.587958 2_2:+6188181 Msa0233790:CDS
TTCCACCTTGTTCGTGACGA+GGG 0.588122 2_2:-6188166 None:intergenic
GGTTTGATGATCGGGTTACT+GGG 0.588175 2_2:+6188864 Msa0233790:CDS
GAGAGTAAGCTTGATTTCGG+AGG 0.590245 2_2:+6189040 Msa0233790:CDS
TTGTTGAACAATCAACACTT+GGG 0.590968 2_2:+6189430 Msa0233790:CDS
GCTATCATAAGTACTGGTGT+TGG 0.593538 2_2:+6189181 Msa0233790:CDS
ATCAACCTATTAGGTTAACT+GGG 0.594575 2_2:+6188549 Msa0233790:CDS
GTCCTCCCTCGTCACGAACA+AGG 0.595803 2_2:+6188161 Msa0233790:CDS
GATGTCATAACCGAGGGTGA+TGG 0.596424 2_2:+6189721 Msa0233790:CDS
CTGCAAACTTCAACATATTG+GGG 0.597132 2_2:-6189540 None:intergenic
TGCCAATCCCGACGCTATTG+TGG 0.597385 2_2:+6189321 Msa0233790:CDS
ACTTATGATAGCCTCCCCAT+TGG 0.598564 2_2:-6189170 None:intergenic
ATTCCACCTTGTTCGTGACG+AGG 0.598895 2_2:-6188167 None:intergenic
AATAGAGCTCACACCTACCT+GGG 0.601839 2_2:+6189490 Msa0233790:CDS
TCGGGTTACTGGGAAGCTTG+AGG 0.605782 2_2:+6188874 Msa0233790:CDS
CTGTTGCTAGTACTTTGATG+GGG 0.606374 2_2:+6188726 Msa0233790:CDS
GTGGTTGACATCGATGGTGA+TGG 0.607155 2_2:+6189340 Msa0233790:CDS
GGCAGCTCGTGTGACAAAGA+GGG 0.609397 2_2:+6189579 Msa0233790:CDS
GAATAAGCAGCCTCATGTGT+CGG 0.610801 2_2:+6188955 Msa0233790:CDS
TTTCCATTGAAGCGCCGCCA+GGG 0.615322 2_2:-6188100 None:intergenic
TTGATGTTGATGATATACCT+AGG 0.619737 2_2:+6188423 Msa0233790:CDS
TTTGAGGATGTCATAACCGA+GGG 0.621237 2_2:+6189715 Msa0233790:CDS
ACGAGGGAGGACGTTACGAA+TGG 0.622770 2_2:-6188150 None:intergenic
GATGTCAACCACAATAGCGT+CGG 0.624097 2_2:-6189329 None:intergenic
GGTGGAATATTCGCTGCCGA+GGG 0.624227 2_2:+6188182 Msa0233790:CDS
GGAGGAACGAGCGTAACCCT+CGG 0.628310 2_2:-6188198 None:intergenic
TGGTGAAGATGAAGAGATGG+TGG 0.629345 2_2:-6187826 None:intergenic
TTGTGGTGAAGATGAAGAGA+TGG 0.630262 2_2:-6187829 None:intergenic
CAATGACATCAAGAAGGTAG+GGG 0.631239 2_2:-6189645 None:intergenic
GGCAACACATGCTCTTGATG+CGG 0.634193 2_2:-6189670 None:intergenic
TGACGAGCTTACCAATGGGG+AGG 0.634568 2_2:+6189159 Msa0233790:CDS
GACTGTTTATGCTAATTATG+CGG 0.636569 2_2:+6188805 Msa0233790:CDS
GCAGACACCAGGGAGACCGG+AGG 0.638324 2_2:-6188216 None:intergenic
CACCTTGTTCGTGACGAGGG+AGG 0.638696 2_2:-6188163 None:intergenic
TTTATAGGTACAAGAGACCG+AGG 0.639559 2_2:+6189230 Msa0233790:CDS
GTGTTGGACAACATCAGATG+TGG 0.643554 2_2:+6189197 Msa0233790:CDS
TGGTAGTTTGAATTGTAGCG+AGG 0.644126 2_2:+6188670 Msa0233790:CDS
AGTACTAGCAACAGGTACAC+CGG 0.645359 2_2:-6188717 None:intergenic
GCGGTACAATGACATCAAGA+AGG 0.647744 2_2:-6189651 None:intergenic
GCTATTGTGGTTGACATCGA+TGG 0.649650 2_2:+6189334 Msa0233790:CDS
ACTTGGGTATGGTTGTCCAG+TGG 0.649969 2_2:+6189446 Msa0233790:CDS
GTCGAAGCACTCGAACGTCA+GGG 0.650703 2_2:+6188056 Msa0233790:CDS
GGTAAGTGATTCTGAAAACG+TGG 0.650896 2_2:-6187869 None:intergenic
AGGGAGGACGTTACGAATGG+CGG 0.657905 2_2:-6188147 None:intergenic
AATCGGGAAATGAATTGTTG+AGG 0.661173 2_2:-6187996 None:intergenic
TCCCCACAAACCGACACATG+AGG 0.664573 2_2:-6188965 None:intergenic
GGTGCTACTAATCTCGTCAG+TGG 0.668110 2_2:+6188257 Msa0233790:CDS
ACCTGTATAGCATACTGCGG+AGG 0.674124 2_2:-6189133 None:intergenic
AGAGATGGTGGTTGTGAACG+CGG 0.674476 2_2:-6187814 None:intergenic
CTTTGAGGATGTCATAACCG+AGG 0.677141 2_2:+6189714 Msa0233790:CDS
GTATATGAATAGGTTACCCA+AGG 0.677418 2_2:+6188571 Msa0233790:CDS
TGTTGGACAACATCAGATGT+GGG 0.692591 2_2:+6189198 Msa0233790:CDS
GACGTTCGAGTGCTTCGACG+AGG 0.694030 2_2:-6188052 None:intergenic
AAGTGGCGATGCAGACACCA+GGG 0.695335 2_2:-6188226 None:intergenic
AATGTCTTCGCTTACCCTGG+CGG 0.697805 2_2:+6188086 Msa0233790:CDS
TCTTGACGAGCTTACCAATG+GGG 0.698334 2_2:+6189156 Msa0233790:CDS
TCAACAACAATATCTTAACA+GGG 0.698879 2_2:-6189414 None:intergenic
CTCCCTCGTCACGAACAAGG+TGG 0.705691 2_2:+6188164 Msa0233790:CDS
TGACGAGATTAGTAGCACCT+GGG 0.711329 2_2:-6188253 None:intergenic
GGAGTTGGCTACTATCAAGG+TGG 0.721822 2_2:+6189384 Msa0233790:CDS
AGAACCTGTATAGCATACTG+CGG 0.744810 2_2:-6189136 None:intergenic
TCAGTACCAATCATTCTCCG+GGG 0.748029 2_2:-6188335 None:intergenic
ATTGTAGCGAGGAATTGAGG+CGG 0.749278 2_2:+6188681 Msa0233790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAACAAGATAATTATGCT+TGG - chr2_2:6188405-6188424 None:intergenic 25.0%
! TCAAACTTCTTATAACTCAT+CGG - chr2_2:6189103-6189122 None:intergenic 25.0%
! TCAACAACAATATCTTAACA+GGG - chr2_2:6189417-6189436 None:intergenic 25.0%
! TTCAACAACAATATCTTAAC+AGG - chr2_2:6189418-6189437 None:intergenic 25.0%
! AAGAACAAGATAATTATGCT+TGG - chr2_2:6188405-6188424 None:intergenic 25.0%
! TCAAACTTCTTATAACTCAT+CGG - chr2_2:6189103-6189122 None:intergenic 25.0%
! TCAACAACAATATCTTAACA+GGG - chr2_2:6189417-6189436 None:intergenic 25.0%
! TTCAACAACAATATCTTAAC+AGG - chr2_2:6189418-6189437 None:intergenic 25.0%
!! TTGATGTTGATGATATACCT+AGG + chr2_2:6188423-6188442 Msa0233790:CDS 30.0%
TTAGGTATATCGATCAAAAC+AGG - chr2_2:6188494-6188513 None:intergenic 30.0%
!!! TGTTTTGATCGATATACCTA+AGG + chr2_2:6188493-6188512 Msa0233790:CDS 30.0%
ATCAACCTATTAGGTTAACT+GGG + chr2_2:6188549-6188568 Msa0233790:CDS 30.0%
ATATACCCAGTTAACCTAAT+AGG - chr2_2:6188557-6188576 None:intergenic 30.0%
! AAGAAACCTGTTTTGTATGT+TGG + chr2_2:6188644-6188663 Msa0233790:CDS 30.0%
GACTGTTTATGCTAATTATG+CGG + chr2_2:6188805-6188824 Msa0233790:CDS 30.0%
!! AATCGAATTTTGGAGAGTAA+TGG + chr2_2:6189013-6189032 Msa0233790:CDS 30.0%
!! ATCGAATTTTGGAGAGTAAT+GGG + chr2_2:6189014-6189033 Msa0233790:CDS 30.0%
ATAGAGAGTAAGCTTGATTT+CGG + chr2_2:6189037-6189056 Msa0233790:CDS 30.0%
AACTGAATGATCAGAAAGTT+AGG + chr2_2:6189074-6189093 Msa0233790:CDS 30.0%
! AAGCTTTATGATGAATGTTC+AGG + chr2_2:6189363-6189382 Msa0233790:CDS 30.0%
TTGTTGAACAATCAACACTT+GGG + chr2_2:6189430-6189449 Msa0233790:CDS 30.0%
! ATATTTCTTTCTCATTGGCT+GGG - chr2_2:6189519-6189538 None:intergenic 30.0%
AATATTTCTTTCTCATTGGC+TGG - chr2_2:6189520-6189539 None:intergenic 30.0%
!! TTGATGTTGATGATATACCT+AGG + chr2_2:6188423-6188442 Msa0233790:CDS 30.0%
TTAGGTATATCGATCAAAAC+AGG - chr2_2:6188494-6188513 None:intergenic 30.0%
!!! TGTTTTGATCGATATACCTA+AGG + chr2_2:6188493-6188512 Msa0233790:CDS 30.0%
ATCAACCTATTAGGTTAACT+GGG + chr2_2:6188549-6188568 Msa0233790:CDS 30.0%
ATATACCCAGTTAACCTAAT+AGG - chr2_2:6188557-6188576 None:intergenic 30.0%
! AAGAAACCTGTTTTGTATGT+TGG + chr2_2:6188644-6188663 Msa0233790:CDS 30.0%
GACTGTTTATGCTAATTATG+CGG + chr2_2:6188805-6188824 Msa0233790:CDS 30.0%
!! AATCGAATTTTGGAGAGTAA+TGG + chr2_2:6189013-6189032 Msa0233790:CDS 30.0%
!! ATCGAATTTTGGAGAGTAAT+GGG + chr2_2:6189014-6189033 Msa0233790:CDS 30.0%
ATAGAGAGTAAGCTTGATTT+CGG + chr2_2:6189037-6189056 Msa0233790:CDS 30.0%
AACTGAATGATCAGAAAGTT+AGG + chr2_2:6189074-6189093 Msa0233790:CDS 30.0%
! AAGCTTTATGATGAATGTTC+AGG + chr2_2:6189363-6189382 Msa0233790:CDS 30.0%
TTGTTGAACAATCAACACTT+GGG + chr2_2:6189430-6189449 Msa0233790:CDS 30.0%
! ATATTTCTTTCTCATTGGCT+GGG - chr2_2:6189519-6189538 None:intergenic 30.0%
AATATTTCTTTCTCATTGGC+TGG - chr2_2:6189520-6189539 None:intergenic 30.0%
!!! TTTTGGTTTGGAAGTGATTG+TGG - chr2_2:6187849-6187868 None:intergenic 35.0%
!! TGATTCTGAAAACGTGGTTT+TGG - chr2_2:6187866-6187885 None:intergenic 35.0%
AATCGGGAAATGAATTGTTG+AGG - chr2_2:6187999-6188018 None:intergenic 35.0%
GATCTAGTTACCTCAACAAT+CGG - chr2_2:6188377-6188396 None:intergenic 35.0%
!! GCGTTTTTATTAGCTTCTAG+TGG + chr2_2:6188458-6188477 Msa0233790:CDS 35.0%
!! CTAATAGGTTGATCCCAATT+CGG - chr2_2:6188542-6188561 None:intergenic 35.0%
GATCAACCTATTAGGTTAAC+TGG + chr2_2:6188548-6188567 Msa0233790:CDS 35.0%
GGTTAACTGGGTATATGAAT+AGG + chr2_2:6188561-6188580 Msa0233790:CDS 35.0%
GTATATGAATAGGTTACCCA+AGG + chr2_2:6188571-6188590 Msa0233790:CDS 35.0%
ACAGATTGTGAGGTTGTTAT+TGG + chr2_2:6188616-6188635 Msa0233790:CDS 35.0%
! AAACCTGTTTTGTATGTTGG+TGG + chr2_2:6188647-6188666 Msa0233790:CDS 35.0%
ATATTGATGCTGCTGAGATT+GGG + chr2_2:6188930-6188949 Msa0233790:CDS 35.0%
!! GATTTGAAGTTGGCTTTGAA+GGG + chr2_2:6188986-6189005 Msa0233790:CDS 35.0%
!! ATTTGAAGTTGGCTTTGAAG+GGG + chr2_2:6188987-6189006 Msa0233790:CDS 35.0%
TATGATGAATGTTCAGGAGT+TGG + chr2_2:6189369-6189388 Msa0233790:CDS 35.0%
GTTGTTGAACAATCAACACT+TGG + chr2_2:6189429-6189448 Msa0233790:CDS 35.0%
GGGGAATATTTCTTTCTCAT+TGG - chr2_2:6189524-6189543 None:intergenic 35.0%
CTGCAAACTTCAACATATTG+GGG - chr2_2:6189543-6189562 None:intergenic 35.0%
CCTGCAAACTTCAACATATT+GGG - chr2_2:6189544-6189563 None:intergenic 35.0%
ACCTGCAAACTTCAACATAT+TGG - chr2_2:6189545-6189564 None:intergenic 35.0%
ACAATGACATCAAGAAGGTA+GGG - chr2_2:6189649-6189668 None:intergenic 35.0%
TACAATGACATCAAGAAGGT+AGG - chr2_2:6189650-6189669 None:intergenic 35.0%
!!! TTTTGGTTTGGAAGTGATTG+TGG - chr2_2:6187849-6187868 None:intergenic 35.0%
!! TGATTCTGAAAACGTGGTTT+TGG - chr2_2:6187866-6187885 None:intergenic 35.0%
AATCGGGAAATGAATTGTTG+AGG - chr2_2:6187999-6188018 None:intergenic 35.0%
GATCTAGTTACCTCAACAAT+CGG - chr2_2:6188377-6188396 None:intergenic 35.0%
!! GCGTTTTTATTAGCTTCTAG+TGG + chr2_2:6188458-6188477 Msa0233790:CDS 35.0%
!! CTAATAGGTTGATCCCAATT+CGG - chr2_2:6188542-6188561 None:intergenic 35.0%
GATCAACCTATTAGGTTAAC+TGG + chr2_2:6188548-6188567 Msa0233790:CDS 35.0%
GGTTAACTGGGTATATGAAT+AGG + chr2_2:6188561-6188580 Msa0233790:CDS 35.0%
GTATATGAATAGGTTACCCA+AGG + chr2_2:6188571-6188590 Msa0233790:CDS 35.0%
ACAGATTGTGAGGTTGTTAT+TGG + chr2_2:6188616-6188635 Msa0233790:CDS 35.0%
! AAACCTGTTTTGTATGTTGG+TGG + chr2_2:6188647-6188666 Msa0233790:CDS 35.0%
ATATTGATGCTGCTGAGATT+GGG + chr2_2:6188930-6188949 Msa0233790:CDS 35.0%
!! GATTTGAAGTTGGCTTTGAA+GGG + chr2_2:6188986-6189005 Msa0233790:CDS 35.0%
!! ATTTGAAGTTGGCTTTGAAG+GGG + chr2_2:6188987-6189006 Msa0233790:CDS 35.0%
TATGATGAATGTTCAGGAGT+TGG + chr2_2:6189369-6189388 Msa0233790:CDS 35.0%
GTTGTTGAACAATCAACACT+TGG + chr2_2:6189429-6189448 Msa0233790:CDS 35.0%
GGGGAATATTTCTTTCTCAT+TGG - chr2_2:6189524-6189543 None:intergenic 35.0%
CTGCAAACTTCAACATATTG+GGG - chr2_2:6189543-6189562 None:intergenic 35.0%
CCTGCAAACTTCAACATATT+GGG - chr2_2:6189544-6189563 None:intergenic 35.0%
ACCTGCAAACTTCAACATAT+TGG - chr2_2:6189545-6189564 None:intergenic 35.0%
ACAATGACATCAAGAAGGTA+GGG - chr2_2:6189649-6189668 None:intergenic 35.0%
TACAATGACATCAAGAAGGT+AGG - chr2_2:6189650-6189669 None:intergenic 35.0%
TTGTGGTGAAGATGAAGAGA+TGG - chr2_2:6187832-6187851 None:intergenic 40.0%
!!! CTGAAAACGTGGTTTTGGTT+TGG - chr2_2:6187861-6187880 None:intergenic 40.0%
! GGTAAGTGATTCTGAAAACG+TGG - chr2_2:6187872-6187891 None:intergenic 40.0%
TGTTTGGGGAAGTGGAAAAT+GGG - chr2_2:6187893-6187912 None:intergenic 40.0%
!!! TTTTTGAGTAGGGTTGGAGA+TGG - chr2_2:6187958-6187977 None:intergenic 40.0%
!!! AGTGGTTTTTTGAGTAGGGT+TGG - chr2_2:6187964-6187983 None:intergenic 40.0%
!!! TGGGAGTGGTTTTTTGAGTA+GGG - chr2_2:6187968-6187987 None:intergenic 40.0%
!!! ATGGGAGTGGTTTTTTGAGT+AGG - chr2_2:6187969-6187988 None:intergenic 40.0%
AAATGAATTGTTGAGGTGGG+GGG - chr2_2:6187992-6188011 None:intergenic 40.0%
GAAATGAATTGTTGAGGTGG+GGG - chr2_2:6187993-6188012 None:intergenic 40.0%
GGAAATGAATTGTTGAGGTG+GGG - chr2_2:6187994-6188013 None:intergenic 40.0%
GGGAAATGAATTGTTGAGGT+GGG - chr2_2:6187995-6188014 None:intergenic 40.0%
ATCAGTACCAATCATTCTCC+GGG - chr2_2:6188339-6188358 None:intergenic 40.0%
CATCAGTACCAATCATTCTC+CGG - chr2_2:6188340-6188359 None:intergenic 40.0%
TCAAGAAACTCCGATTGTTG+AGG + chr2_2:6188364-6188383 Msa0233790:CDS 40.0%
AACGCTTCATTCACTATCCT+AGG - chr2_2:6188443-6188462 None:intergenic 40.0%
ATATCGATCAAAACAGGTCC+AGG - chr2_2:6188488-6188507 None:intergenic 40.0%
ACCTAAGGATATTCAGCAAC+AGG + chr2_2:6188508-6188527 Msa0233790:CDS 40.0%
ACCTGTTGCTGAATATCCTT+AGG - chr2_2:6188512-6188531 None:intergenic 40.0%
AACAGGTTTCTGTTCCGAAT+TGG + chr2_2:6188525-6188544 Msa0233790:CDS 40.0%
ACAGGTTTCTGTTCCGAATT+GGG + chr2_2:6188526-6188545 Msa0233790:CDS 40.0%
CGAATTGGGATCAACCTATT+AGG + chr2_2:6188540-6188559 Msa0233790:CDS 40.0%
TGTTCCAAATGTGCCTCTTT+CGG - chr2_2:6188599-6188618 None:intergenic 40.0%
! CACATTTGGAACAGATTGTG+AGG + chr2_2:6188606-6188625 Msa0233790:CDS 40.0%
TGGTAGTTTGAATTGTAGCG+AGG + chr2_2:6188670-6188689 Msa0233790:CDS 40.0%
TGAATTGTAGCGAGGAATTG+AGG + chr2_2:6188678-6188697 Msa0233790:CDS 40.0%
ACCTGTTGCTAGTACTTTGA+TGG + chr2_2:6188724-6188743 Msa0233790:CDS 40.0%
CCTGTTGCTAGTACTTTGAT+GGG + chr2_2:6188725-6188744 Msa0233790:CDS 40.0%
CTGTTGCTAGTACTTTGATG+GGG + chr2_2:6188726-6188745 Msa0233790:CDS 40.0%
ATTCTCATCCGAACTAGGAT+AGG - chr2_2:6188759-6188778 None:intergenic 40.0%
AACGAATTCTCATCCGAACT+AGG - chr2_2:6188764-6188783 None:intergenic 40.0%
AGAATTCGTTGCAGATGCTT+GGG + chr2_2:6188774-6188793 Msa0233790:CDS 40.0%
! AGTGATCTTTTGCTTGCGTT+TGG + chr2_2:6188836-6188855 Msa0233790:CDS 40.0%
! GTGATCTTTTGCTTGCGTTT+GGG + chr2_2:6188837-6188856 Msa0233790:CDS 40.0%
! TGATCTTTTGCTTGCGTTTG+GGG + chr2_2:6188838-6188857 Msa0233790:CDS 40.0%
! TTGGGGTTAGGTTTGATGAT+CGG + chr2_2:6188855-6188874 Msa0233790:CDS 40.0%
CAATATGAACAATCTTCGCC+CGG - chr2_2:6188910-6188929 None:intergenic 40.0%
GATATTGATGCTGCTGAGAT+TGG + chr2_2:6188929-6188948 Msa0233790:CDS 40.0%
!! GGATTTGAAGTTGGCTTTGA+AGG + chr2_2:6188985-6189004 Msa0233790:CDS 40.0%
! GAAGGGGATCAATCGAATTT+TGG + chr2_2:6189003-6189022 Msa0233790:CDS 40.0%
AGAACCTGTATAGCATACTG+CGG - chr2_2:6189139-6189158 None:intergenic 40.0%
TTCTTGACGAGCTTACCAAT+GGG + chr2_2:6189155-6189174 Msa0233790:CDS 40.0%
!! GCTATCATAAGTACTGGTGT+TGG + chr2_2:6189181-6189200 Msa0233790:CDS 40.0%
TGTTGGACAACATCAGATGT+GGG + chr2_2:6189198-6189217 Msa0233790:CDS 40.0%
TTTATAGGTACAAGAGACCG+AGG + chr2_2:6189230-6189249 Msa0233790:CDS 40.0%
GAACAATCAACACTTGGGTA+TGG + chr2_2:6189435-6189454 Msa0233790:CDS 40.0%
CCCAATATGTTGAAGTTTGC+AGG + chr2_2:6189541-6189560 Msa0233790:CDS 40.0%
! TTTTCTGAATCGCTGCTCTA+AGG - chr2_2:6189609-6189628 None:intergenic 40.0%
CAGAAAATGTTAGATACCCC+TGG + chr2_2:6189622-6189641 Msa0233790:CDS 40.0%
CAATGACATCAAGAAGGTAG+GGG - chr2_2:6189648-6189667 None:intergenic 40.0%
TTGCCAATGATTCCTGCAAA+TGG + chr2_2:6189688-6189707 Msa0233790:CDS 40.0%
GATCCATTTGCAGGAATCAT+TGG - chr2_2:6189694-6189713 None:intergenic 40.0%
TTTGAGGATGTCATAACCGA+GGG + chr2_2:6189715-6189734 Msa0233790:CDS 40.0%
TTGTGGTGAAGATGAAGAGA+TGG - chr2_2:6187832-6187851 None:intergenic 40.0%
!!! CTGAAAACGTGGTTTTGGTT+TGG - chr2_2:6187861-6187880 None:intergenic 40.0%
! GGTAAGTGATTCTGAAAACG+TGG - chr2_2:6187872-6187891 None:intergenic 40.0%
TGTTTGGGGAAGTGGAAAAT+GGG - chr2_2:6187893-6187912 None:intergenic 40.0%
!!! TTTTTGAGTAGGGTTGGAGA+TGG - chr2_2:6187958-6187977 None:intergenic 40.0%
!!! AGTGGTTTTTTGAGTAGGGT+TGG - chr2_2:6187964-6187983 None:intergenic 40.0%
!!! TGGGAGTGGTTTTTTGAGTA+GGG - chr2_2:6187968-6187987 None:intergenic 40.0%
!!! ATGGGAGTGGTTTTTTGAGT+AGG - chr2_2:6187969-6187988 None:intergenic 40.0%
AAATGAATTGTTGAGGTGGG+GGG - chr2_2:6187992-6188011 None:intergenic 40.0%
GAAATGAATTGTTGAGGTGG+GGG - chr2_2:6187993-6188012 None:intergenic 40.0%
GGAAATGAATTGTTGAGGTG+GGG - chr2_2:6187994-6188013 None:intergenic 40.0%
GGGAAATGAATTGTTGAGGT+GGG - chr2_2:6187995-6188014 None:intergenic 40.0%
ATCAGTACCAATCATTCTCC+GGG - chr2_2:6188339-6188358 None:intergenic 40.0%
CATCAGTACCAATCATTCTC+CGG - chr2_2:6188340-6188359 None:intergenic 40.0%
TCAAGAAACTCCGATTGTTG+AGG + chr2_2:6188364-6188383 Msa0233790:CDS 40.0%
AACGCTTCATTCACTATCCT+AGG - chr2_2:6188443-6188462 None:intergenic 40.0%
ATATCGATCAAAACAGGTCC+AGG - chr2_2:6188488-6188507 None:intergenic 40.0%
ACCTAAGGATATTCAGCAAC+AGG + chr2_2:6188508-6188527 Msa0233790:CDS 40.0%
ACCTGTTGCTGAATATCCTT+AGG - chr2_2:6188512-6188531 None:intergenic 40.0%
AACAGGTTTCTGTTCCGAAT+TGG + chr2_2:6188525-6188544 Msa0233790:CDS 40.0%
ACAGGTTTCTGTTCCGAATT+GGG + chr2_2:6188526-6188545 Msa0233790:CDS 40.0%
CGAATTGGGATCAACCTATT+AGG + chr2_2:6188540-6188559 Msa0233790:CDS 40.0%
TGTTCCAAATGTGCCTCTTT+CGG - chr2_2:6188599-6188618 None:intergenic 40.0%
! CACATTTGGAACAGATTGTG+AGG + chr2_2:6188606-6188625 Msa0233790:CDS 40.0%
TGGTAGTTTGAATTGTAGCG+AGG + chr2_2:6188670-6188689 Msa0233790:CDS 40.0%
TGAATTGTAGCGAGGAATTG+AGG + chr2_2:6188678-6188697 Msa0233790:CDS 40.0%
ACCTGTTGCTAGTACTTTGA+TGG + chr2_2:6188724-6188743 Msa0233790:CDS 40.0%
CCTGTTGCTAGTACTTTGAT+GGG + chr2_2:6188725-6188744 Msa0233790:CDS 40.0%
CTGTTGCTAGTACTTTGATG+GGG + chr2_2:6188726-6188745 Msa0233790:CDS 40.0%
ATTCTCATCCGAACTAGGAT+AGG - chr2_2:6188759-6188778 None:intergenic 40.0%
AACGAATTCTCATCCGAACT+AGG - chr2_2:6188764-6188783 None:intergenic 40.0%
AGAATTCGTTGCAGATGCTT+GGG + chr2_2:6188774-6188793 Msa0233790:CDS 40.0%
! AGTGATCTTTTGCTTGCGTT+TGG + chr2_2:6188836-6188855 Msa0233790:CDS 40.0%
! GTGATCTTTTGCTTGCGTTT+GGG + chr2_2:6188837-6188856 Msa0233790:CDS 40.0%
! TGATCTTTTGCTTGCGTTTG+GGG + chr2_2:6188838-6188857 Msa0233790:CDS 40.0%
! TTGGGGTTAGGTTTGATGAT+CGG + chr2_2:6188855-6188874 Msa0233790:CDS 40.0%
CAATATGAACAATCTTCGCC+CGG - chr2_2:6188910-6188929 None:intergenic 40.0%
GATATTGATGCTGCTGAGAT+TGG + chr2_2:6188929-6188948 Msa0233790:CDS 40.0%
!! GGATTTGAAGTTGGCTTTGA+AGG + chr2_2:6188985-6189004 Msa0233790:CDS 40.0%
! GAAGGGGATCAATCGAATTT+TGG + chr2_2:6189003-6189022 Msa0233790:CDS 40.0%
AGAACCTGTATAGCATACTG+CGG - chr2_2:6189139-6189158 None:intergenic 40.0%
TTCTTGACGAGCTTACCAAT+GGG + chr2_2:6189155-6189174 Msa0233790:CDS 40.0%
!! GCTATCATAAGTACTGGTGT+TGG + chr2_2:6189181-6189200 Msa0233790:CDS 40.0%
TGTTGGACAACATCAGATGT+GGG + chr2_2:6189198-6189217 Msa0233790:CDS 40.0%
TTTATAGGTACAAGAGACCG+AGG + chr2_2:6189230-6189249 Msa0233790:CDS 40.0%
GAACAATCAACACTTGGGTA+TGG + chr2_2:6189435-6189454 Msa0233790:CDS 40.0%
CCCAATATGTTGAAGTTTGC+AGG + chr2_2:6189541-6189560 Msa0233790:CDS 40.0%
! TTTTCTGAATCGCTGCTCTA+AGG - chr2_2:6189609-6189628 None:intergenic 40.0%
CAGAAAATGTTAGATACCCC+TGG + chr2_2:6189622-6189641 Msa0233790:CDS 40.0%
CAATGACATCAAGAAGGTAG+GGG - chr2_2:6189648-6189667 None:intergenic 40.0%
TTGCCAATGATTCCTGCAAA+TGG + chr2_2:6189688-6189707 Msa0233790:CDS 40.0%
GATCCATTTGCAGGAATCAT+TGG - chr2_2:6189694-6189713 None:intergenic 40.0%
TTTGAGGATGTCATAACCGA+GGG + chr2_2:6189715-6189734 Msa0233790:CDS 40.0%
TGGTGAAGATGAAGAGATGG+TGG - chr2_2:6187829-6187848 None:intergenic 45.0%
GTGTTTGGGGAAGTGGAAAA+TGG - chr2_2:6187894-6187913 None:intergenic 45.0%
!! TGAGCTTGAAGGGAGTGTTT+GGG - chr2_2:6187908-6187927 None:intergenic 45.0%
!! TTGAGCTTGAAGGGAGTGTT+TGG - chr2_2:6187909-6187928 None:intergenic 45.0%
!! AAGCGGAGATTTTGAGAGAG+CGG - chr2_2:6187935-6187954 None:intergenic 45.0%
CGGGAAATGAATTGTTGAGG+TGG - chr2_2:6187996-6188015 None:intergenic 45.0%
ACAAATGTCTTCGCTTACCC+TGG + chr2_2:6188083-6188102 Msa0233790:CDS 45.0%
TGACGAGATTAGTAGCACCT+GGG - chr2_2:6188256-6188275 None:intergenic 45.0%
GTTCCTCTTATTGCCATCAC+CGG + chr2_2:6188305-6188324 Msa0233790:CDS 45.0%
TCAGTACCAATCATTCTCCG+GGG - chr2_2:6188338-6188357 None:intergenic 45.0%
TTAGCTTCTAGTGGTAGACC+TGG + chr2_2:6188467-6188486 Msa0233790:CDS 45.0%
CCACCACCAACATACAAAAC+AGG - chr2_2:6188653-6188672 None:intergenic 45.0%
!! CCTGTTTTGTATGTTGGTGG+TGG + chr2_2:6188650-6188669 Msa0233790:CDS 45.0%
ATTGTAGCGAGGAATTGAGG+CGG + chr2_2:6188681-6188700 Msa0233790:CDS 45.0%
!! AGGCGGTTTGTTGAGTTAAC+CGG + chr2_2:6188698-6188717 Msa0233790:CDS 45.0%
AGTACTAGCAACAGGTACAC+CGG - chr2_2:6188720-6188739 None:intergenic 45.0%
! CCCATCAAAGTACTAGCAAC+AGG - chr2_2:6188728-6188747 None:intergenic 45.0%
TGCTAGTACTTTGATGGGGT+TGG + chr2_2:6188730-6188749 Msa0233790:CDS 45.0%
GCTAGTACTTTGATGGGGTT+GGG + chr2_2:6188731-6188750 Msa0233790:CDS 45.0%
GTTGGGTTCCTATCCTAGTT+CGG + chr2_2:6188748-6188767 Msa0233790:CDS 45.0%
GAGAATTCGTTGCAGATGCT+TGG + chr2_2:6188773-6188792 Msa0233790:CDS 45.0%
!! TTTTGCTTGCGTTTGGGGTT+AGG + chr2_2:6188843-6188862 Msa0233790:CDS 45.0%
! TGGGGTTAGGTTTGATGATC+GGG + chr2_2:6188856-6188875 Msa0233790:CDS 45.0%
! AGGTTTGATGATCGGGTTAC+TGG + chr2_2:6188863-6188882 Msa0233790:CDS 45.0%
! GGTTTGATGATCGGGTTACT+GGG + chr2_2:6188864-6188883 Msa0233790:CDS 45.0%
GAATAAGCAGCCTCATGTGT+CGG + chr2_2:6188955-6188974 Msa0233790:CDS 45.0%
! GGTTTGTGGGGATTTGAAGT+TGG + chr2_2:6188976-6188995 Msa0233790:CDS 45.0%
GAGAGTAAGCTTGATTTCGG+AGG + chr2_2:6189040-6189059 Msa0233790:CDS 45.0%
GTAAGCTTGATTTCGGAGGT+TGG + chr2_2:6189044-6189063 Msa0233790:CDS 45.0%
GTTCTTGACGAGCTTACCAA+TGG + chr2_2:6189154-6189173 Msa0233790:CDS 45.0%
TCTTGACGAGCTTACCAATG+GGG + chr2_2:6189156-6189175 Msa0233790:CDS 45.0%
ACTTATGATAGCCTCCCCAT+TGG - chr2_2:6189173-6189192 None:intergenic 45.0%
GTGTTGGACAACATCAGATG+TGG + chr2_2:6189197-6189216 Msa0233790:CDS 45.0%
!! TGTGGGCTGCTCAGTTTTAT+AGG + chr2_2:6189215-6189234 Msa0233790:CDS 45.0%
ATGTCAACCACAATAGCGTC+GGG - chr2_2:6189331-6189350 None:intergenic 45.0%
GATGTCAACCACAATAGCGT+CGG - chr2_2:6189332-6189351 None:intergenic 45.0%
GCTATTGTGGTTGACATCGA+TGG + chr2_2:6189334-6189353 Msa0233790:CDS 45.0%
TCAGGAGTTGGCTACTATCA+AGG + chr2_2:6189381-6189400 Msa0233790:CDS 45.0%
AATAGAGCTCACACCTACCT+GGG + chr2_2:6189490-6189509 Msa0233790:CDS 45.0%
TTGAAGTTTGCAGGTGCTTG+TGG + chr2_2:6189550-6189569 Msa0233790:CDS 45.0%
GCGGTACAATGACATCAAGA+AGG - chr2_2:6189654-6189673 None:intergenic 45.0%
TCCTGCAAATGGATCCTTTG+AGG + chr2_2:6189699-6189718 Msa0233790:CDS 45.0%
TCCTCAAAGGATCCATTTGC+AGG - chr2_2:6189703-6189722 None:intergenic 45.0%
CTCGGTTATGACATCCTCAA+AGG - chr2_2:6189716-6189735 None:intergenic 45.0%
! CTTTGAGGATGTCATAACCG+AGG + chr2_2:6189714-6189733 Msa0233790:CDS 45.0%
TGGTGAAGATGAAGAGATGG+TGG - chr2_2:6187829-6187848 None:intergenic 45.0%
GTGTTTGGGGAAGTGGAAAA+TGG - chr2_2:6187894-6187913 None:intergenic 45.0%
!! TGAGCTTGAAGGGAGTGTTT+GGG - chr2_2:6187908-6187927 None:intergenic 45.0%
!! TTGAGCTTGAAGGGAGTGTT+TGG - chr2_2:6187909-6187928 None:intergenic 45.0%
!! AAGCGGAGATTTTGAGAGAG+CGG - chr2_2:6187935-6187954 None:intergenic 45.0%
CGGGAAATGAATTGTTGAGG+TGG - chr2_2:6187996-6188015 None:intergenic 45.0%
ACAAATGTCTTCGCTTACCC+TGG + chr2_2:6188083-6188102 Msa0233790:CDS 45.0%
TGACGAGATTAGTAGCACCT+GGG - chr2_2:6188256-6188275 None:intergenic 45.0%
GTTCCTCTTATTGCCATCAC+CGG + chr2_2:6188305-6188324 Msa0233790:CDS 45.0%
TCAGTACCAATCATTCTCCG+GGG - chr2_2:6188338-6188357 None:intergenic 45.0%
TTAGCTTCTAGTGGTAGACC+TGG + chr2_2:6188467-6188486 Msa0233790:CDS 45.0%
CCACCACCAACATACAAAAC+AGG - chr2_2:6188653-6188672 None:intergenic 45.0%
!! CCTGTTTTGTATGTTGGTGG+TGG + chr2_2:6188650-6188669 Msa0233790:CDS 45.0%
ATTGTAGCGAGGAATTGAGG+CGG + chr2_2:6188681-6188700 Msa0233790:CDS 45.0%
!! AGGCGGTTTGTTGAGTTAAC+CGG + chr2_2:6188698-6188717 Msa0233790:CDS 45.0%
AGTACTAGCAACAGGTACAC+CGG - chr2_2:6188720-6188739 None:intergenic 45.0%
! CCCATCAAAGTACTAGCAAC+AGG - chr2_2:6188728-6188747 None:intergenic 45.0%
TGCTAGTACTTTGATGGGGT+TGG + chr2_2:6188730-6188749 Msa0233790:CDS 45.0%
GCTAGTACTTTGATGGGGTT+GGG + chr2_2:6188731-6188750 Msa0233790:CDS 45.0%
GTTGGGTTCCTATCCTAGTT+CGG + chr2_2:6188748-6188767 Msa0233790:CDS 45.0%
GAGAATTCGTTGCAGATGCT+TGG + chr2_2:6188773-6188792 Msa0233790:CDS 45.0%
!! TTTTGCTTGCGTTTGGGGTT+AGG + chr2_2:6188843-6188862 Msa0233790:CDS 45.0%
! TGGGGTTAGGTTTGATGATC+GGG + chr2_2:6188856-6188875 Msa0233790:CDS 45.0%
! AGGTTTGATGATCGGGTTAC+TGG + chr2_2:6188863-6188882 Msa0233790:CDS 45.0%
! GGTTTGATGATCGGGTTACT+GGG + chr2_2:6188864-6188883 Msa0233790:CDS 45.0%
GAATAAGCAGCCTCATGTGT+CGG + chr2_2:6188955-6188974 Msa0233790:CDS 45.0%
! GGTTTGTGGGGATTTGAAGT+TGG + chr2_2:6188976-6188995 Msa0233790:CDS 45.0%
GAGAGTAAGCTTGATTTCGG+AGG + chr2_2:6189040-6189059 Msa0233790:CDS 45.0%
GTAAGCTTGATTTCGGAGGT+TGG + chr2_2:6189044-6189063 Msa0233790:CDS 45.0%
GTTCTTGACGAGCTTACCAA+TGG + chr2_2:6189154-6189173 Msa0233790:CDS 45.0%
TCTTGACGAGCTTACCAATG+GGG + chr2_2:6189156-6189175 Msa0233790:CDS 45.0%
ACTTATGATAGCCTCCCCAT+TGG - chr2_2:6189173-6189192 None:intergenic 45.0%
GTGTTGGACAACATCAGATG+TGG + chr2_2:6189197-6189216 Msa0233790:CDS 45.0%
!! TGTGGGCTGCTCAGTTTTAT+AGG + chr2_2:6189215-6189234 Msa0233790:CDS 45.0%
ATGTCAACCACAATAGCGTC+GGG - chr2_2:6189331-6189350 None:intergenic 45.0%
GATGTCAACCACAATAGCGT+CGG - chr2_2:6189332-6189351 None:intergenic 45.0%
GCTATTGTGGTTGACATCGA+TGG + chr2_2:6189334-6189353 Msa0233790:CDS 45.0%
TCAGGAGTTGGCTACTATCA+AGG + chr2_2:6189381-6189400 Msa0233790:CDS 45.0%
AATAGAGCTCACACCTACCT+GGG + chr2_2:6189490-6189509 Msa0233790:CDS 45.0%
TTGAAGTTTGCAGGTGCTTG+TGG + chr2_2:6189550-6189569 Msa0233790:CDS 45.0%
GCGGTACAATGACATCAAGA+AGG - chr2_2:6189654-6189673 None:intergenic 45.0%
TCCTGCAAATGGATCCTTTG+AGG + chr2_2:6189699-6189718 Msa0233790:CDS 45.0%
TCCTCAAAGGATCCATTTGC+AGG - chr2_2:6189703-6189722 None:intergenic 45.0%
CTCGGTTATGACATCCTCAA+AGG - chr2_2:6189716-6189735 None:intergenic 45.0%
! CTTTGAGGATGTCATAACCG+AGG + chr2_2:6189714-6189733 Msa0233790:CDS 45.0%
! AGAGATGGTGGTTGTGAACG+CGG - chr2_2:6187817-6187836 None:intergenic 50.0%
!! GAGCTTGAAGGGAGTGTTTG+GGG - chr2_2:6187907-6187926 None:intergenic 50.0%
AGTAGGGTTGGAGATGGAAG+CGG - chr2_2:6187952-6187971 None:intergenic 50.0%
AATTGTTGAGGTGGGGGGAT+GGG - chr2_2:6187987-6188006 None:intergenic 50.0%
! AGGATATCTGCGCCTTTTCG+GGG - chr2_2:6188035-6188054 None:intergenic 50.0%
! GAGGATATCTGCGCCTTTTC+GGG - chr2_2:6188036-6188055 None:intergenic 50.0%
! CGAGGATATCTGCGCCTTTT+CGG - chr2_2:6188037-6188056 None:intergenic 50.0%
AATGTCTTCGCTTACCCTGG+CGG + chr2_2:6188086-6188105 Msa0233790:CDS 50.0%
TTCCACCTTGTTCGTGACGA+GGG - chr2_2:6188169-6188188 None:intergenic 50.0%
ATTCCACCTTGTTCGTGACG+AGG - chr2_2:6188170-6188189 None:intergenic 50.0%
CTGACGAGATTAGTAGCACC+TGG - chr2_2:6188257-6188276 None:intergenic 50.0%
!! GGTGCTACTAATCTCGTCAG+TGG + chr2_2:6188257-6188276 Msa0233790:CDS 50.0%
! TGACCGGTGATGGCAATAAG+AGG - chr2_2:6188311-6188330 None:intergenic 50.0%
TCTTATTGCCATCACCGGTC+AGG + chr2_2:6188310-6188329 Msa0233790:CDS 50.0%
TTGCAGATGCTTGGGATGCA+TGG + chr2_2:6188782-6188801 Msa0233790:CDS 50.0%
TGCAGATGCTTGGGATGCAT+GGG + chr2_2:6188783-6188802 Msa0233790:CDS 50.0%
!! AGCCTCATGTGTCGGTTTGT+GGG + chr2_2:6188963-6188982 Msa0233790:CDS 50.0%
TCCTCCGCAGTATGCTATAC+AGG + chr2_2:6189132-6189151 Msa0233790:CDS 50.0%
ACCTGTATAGCATACTGCGG+AGG - chr2_2:6189136-6189155 None:intergenic 50.0%
GGGGAGGCTATCATAAGTAC+TGG + chr2_2:6189175-6189194 Msa0233790:CDS 50.0%
! TGGTTGACTTCTGCTGGTCT+TGG + chr2_2:6189256-6189275 Msa0233790:CDS 50.0%
CGCTATGGGATTTGGATTGC+CGG + chr2_2:6189279-6189298 Msa0233790:CDS 50.0%
! AACCACAATAGCGTCGGGAT+TGG - chr2_2:6189326-6189345 None:intergenic 50.0%
GTGGTTGACATCGATGGTGA+TGG + chr2_2:6189340-6189359 Msa0233790:CDS 50.0%
GGAGTTGGCTACTATCAAGG+TGG + chr2_2:6189384-6189403 Msa0233790:CDS 50.0%
ACTTGGGTATGGTTGTCCAG+TGG + chr2_2:6189446-6189465 Msa0233790:CDS 50.0%
CTTGGGTATGGTTGTCCAGT+GGG + chr2_2:6189447-6189466 Msa0233790:CDS 50.0%
TATAGAACCGATCCTCCCAC+TGG - chr2_2:6189465-6189484 None:intergenic 50.0%
CAGGTAGGTGTGAGCTCTAT+TGG - chr2_2:6189491-6189510 None:intergenic 50.0%
CAATAGAGCTCACACCTACC+TGG + chr2_2:6189489-6189508 Msa0233790:CDS 50.0%
TGCAGGTGCTTGTGGTATAC+CGG + chr2_2:6189558-6189577 Msa0233790:CDS 50.0%
GGCAACACATGCTCTTGATG+CGG - chr2_2:6189673-6189692 None:intergenic 50.0%
GATGTCATAACCGAGGGTGA+TGG + chr2_2:6189721-6189740 Msa0233790:CDS 50.0%
ACTTATCCTGCCATCACCCT+CGG - chr2_2:6189734-6189753 None:intergenic 50.0%
! AGAGATGGTGGTTGTGAACG+CGG - chr2_2:6187817-6187836 None:intergenic 50.0%
!! GAGCTTGAAGGGAGTGTTTG+GGG - chr2_2:6187907-6187926 None:intergenic 50.0%
AGTAGGGTTGGAGATGGAAG+CGG - chr2_2:6187952-6187971 None:intergenic 50.0%
AATTGTTGAGGTGGGGGGAT+GGG - chr2_2:6187987-6188006 None:intergenic 50.0%
! AGGATATCTGCGCCTTTTCG+GGG - chr2_2:6188035-6188054 None:intergenic 50.0%
! GAGGATATCTGCGCCTTTTC+GGG - chr2_2:6188036-6188055 None:intergenic 50.0%
! CGAGGATATCTGCGCCTTTT+CGG - chr2_2:6188037-6188056 None:intergenic 50.0%
AATGTCTTCGCTTACCCTGG+CGG + chr2_2:6188086-6188105 Msa0233790:CDS 50.0%
TTCCACCTTGTTCGTGACGA+GGG - chr2_2:6188169-6188188 None:intergenic 50.0%
ATTCCACCTTGTTCGTGACG+AGG - chr2_2:6188170-6188189 None:intergenic 50.0%
CTGACGAGATTAGTAGCACC+TGG - chr2_2:6188257-6188276 None:intergenic 50.0%
!! GGTGCTACTAATCTCGTCAG+TGG + chr2_2:6188257-6188276 Msa0233790:CDS 50.0%
! TGACCGGTGATGGCAATAAG+AGG - chr2_2:6188311-6188330 None:intergenic 50.0%
TCTTATTGCCATCACCGGTC+AGG + chr2_2:6188310-6188329 Msa0233790:CDS 50.0%
TTGCAGATGCTTGGGATGCA+TGG + chr2_2:6188782-6188801 Msa0233790:CDS 50.0%
TGCAGATGCTTGGGATGCAT+GGG + chr2_2:6188783-6188802 Msa0233790:CDS 50.0%
!! AGCCTCATGTGTCGGTTTGT+GGG + chr2_2:6188963-6188982 Msa0233790:CDS 50.0%
TCCTCCGCAGTATGCTATAC+AGG + chr2_2:6189132-6189151 Msa0233790:CDS 50.0%
ACCTGTATAGCATACTGCGG+AGG - chr2_2:6189136-6189155 None:intergenic 50.0%
GGGGAGGCTATCATAAGTAC+TGG + chr2_2:6189175-6189194 Msa0233790:CDS 50.0%
! TGGTTGACTTCTGCTGGTCT+TGG + chr2_2:6189256-6189275 Msa0233790:CDS 50.0%
CGCTATGGGATTTGGATTGC+CGG + chr2_2:6189279-6189298 Msa0233790:CDS 50.0%
! AACCACAATAGCGTCGGGAT+TGG - chr2_2:6189326-6189345 None:intergenic 50.0%
GTGGTTGACATCGATGGTGA+TGG + chr2_2:6189340-6189359 Msa0233790:CDS 50.0%
GGAGTTGGCTACTATCAAGG+TGG + chr2_2:6189384-6189403 Msa0233790:CDS 50.0%
ACTTGGGTATGGTTGTCCAG+TGG + chr2_2:6189446-6189465 Msa0233790:CDS 50.0%
CTTGGGTATGGTTGTCCAGT+GGG + chr2_2:6189447-6189466 Msa0233790:CDS 50.0%
TATAGAACCGATCCTCCCAC+TGG - chr2_2:6189465-6189484 None:intergenic 50.0%
CAGGTAGGTGTGAGCTCTAT+TGG - chr2_2:6189491-6189510 None:intergenic 50.0%
CAATAGAGCTCACACCTACC+TGG + chr2_2:6189489-6189508 Msa0233790:CDS 50.0%
TGCAGGTGCTTGTGGTATAC+CGG + chr2_2:6189558-6189577 Msa0233790:CDS 50.0%
GGCAACACATGCTCTTGATG+CGG - chr2_2:6189673-6189692 None:intergenic 50.0%
GATGTCATAACCGAGGGTGA+TGG + chr2_2:6189721-6189740 Msa0233790:CDS 50.0%
ACTTATCCTGCCATCACCCT+CGG - chr2_2:6189734-6189753 None:intergenic 50.0%
! GAACGCGGTTTTTGCAGCAG+TGG - chr2_2:6187802-6187821 None:intergenic 55.0%
!! GAAGGGAGTGTTTGGGGAAG+TGG - chr2_2:6187901-6187920 None:intergenic 55.0%
GAGCGGTGGTTGAGCTTGAA+GGG - chr2_2:6187918-6187937 None:intergenic 55.0%
AGAGCGGTGGTTGAGCTTGA+AGG - chr2_2:6187919-6187938 None:intergenic 55.0%
!! CGGAGATTTTGAGAGAGCGG+TGG - chr2_2:6187932-6187951 None:intergenic 55.0%
GAATTGTTGAGGTGGGGGGA+TGG - chr2_2:6187988-6188007 None:intergenic 55.0%
GGGTTCGTTAGGGGCAAATC+GGG - chr2_2:6188015-6188034 None:intergenic 55.0%
GGGGTTCGTTAGGGGCAAAT+CGG - chr2_2:6188016-6188035 None:intergenic 55.0%
!! GCCTTTTCGGGGTTCGTTAG+GGG - chr2_2:6188024-6188043 None:intergenic 55.0%
!! CGCCTTTTCGGGGTTCGTTA+GGG - chr2_2:6188025-6188044 None:intergenic 55.0%
! GTCGAAGCACTCGAACGTCA+GGG + chr2_2:6188056-6188075 Msa0233790:CDS 55.0%
!! TTTCCATTGAAGCGCCGCCA+GGG - chr2_2:6188103-6188122 None:intergenic 55.0%
!! ATTTCCATTGAAGCGCCGCC+AGG - chr2_2:6188104-6188123 None:intergenic 55.0%
AGGGAGGACGTTACGAATGG+CGG - chr2_2:6188150-6188169 None:intergenic 55.0%
ACGAGGGAGGACGTTACGAA+TGG - chr2_2:6188153-6188172 None:intergenic 55.0%
AGGTGGAATATTCGCTGCCG+AGG + chr2_2:6188181-6188200 Msa0233790:CDS 55.0%
GGTGGAATATTCGCTGCCGA+GGG + chr2_2:6188182-6188201 Msa0233790:CDS 55.0%
AAGTGGCGATGCAGACACCA+GGG - chr2_2:6188229-6188248 None:intergenic 55.0%
GAGATTAGTAGCACCTGGGC+CGG - chr2_2:6188252-6188271 None:intergenic 55.0%
CAGGTTCCCCGGAGAATGAT+TGG + chr2_2:6188329-6188348 Msa0233790:CDS 55.0%
!! GTTACCCAAGGCACCGAAAG+AGG + chr2_2:6188583-6188602 Msa0233790:CDS 55.0%
!! TGTGCCTCTTTCGGTGCCTT+GGG - chr2_2:6188590-6188609 None:intergenic 55.0%
!! ATGTGCCTCTTTCGGTGCCT+TGG - chr2_2:6188591-6188610 None:intergenic 55.0%
! GGCACCGAAAGAGGCACATT+TGG + chr2_2:6188592-6188611 Msa0233790:CDS 55.0%
TCGGGTTACTGGGAAGCTTG+AGG + chr2_2:6188874-6188893 Msa0233790:CDS 55.0%
! AGCTTGAGGCTTTTGCGAGC+CGG + chr2_2:6188888-6188907 Msa0233790:CDS 55.0%
!! CAGCCTCATGTGTCGGTTTG+TGG + chr2_2:6188962-6188981 Msa0233790:CDS 55.0%
!! GCCTCATGTGTCGGTTTGTG+GGG + chr2_2:6188964-6188983 Msa0233790:CDS 55.0%
TCCCCACAAACCGACACATG+AGG - chr2_2:6188968-6188987 None:intergenic 55.0%
TGACGAGCTTACCAATGGGG+AGG + chr2_2:6189159-6189178 Msa0233790:CDS 55.0%
GCAGAAGTCAACCACTGCCT+CGG - chr2_2:6189250-6189269 None:intergenic 55.0%
! AGGCAGTGGTTGACTTCTGC+TGG + chr2_2:6189250-6189269 Msa0233790:CDS 55.0%
!! TTCTGCTGGTCTTGGCGCTA+TGG + chr2_2:6189264-6189283 Msa0233790:CDS 55.0%
!! TCTGCTGGTCTTGGCGCTAT+GGG + chr2_2:6189265-6189284 Msa0233790:CDS 55.0%
GGTCTTGGCGCTATGGGATT+TGG + chr2_2:6189271-6189290 Msa0233790:CDS 55.0%
! ATTTGGATTGCCGGCTGCCA+TGG + chr2_2:6189288-6189307 Msa0233790:CDS 55.0%
! TTTGGATTGCCGGCTGCCAT+GGG + chr2_2:6189289-6189308 Msa0233790:CDS 55.0%
ATTGGCAACAGCAGCTCCCA+TGG - chr2_2:6189308-6189327 None:intergenic 55.0%
TGCCAATCCCGACGCTATTG+TGG + chr2_2:6189321-6189340 Msa0233790:CDS 55.0%
TGGTTGTCCAGTGGGAGGAT+CGG + chr2_2:6189455-6189474 Msa0233790:CDS 55.0%
CTCTTTGTCACACGAGCTGC+CGG - chr2_2:6189580-6189599 None:intergenic 55.0%
GGCAGCTCGTGTGACAAAGA+GGG + chr2_2:6189579-6189598 Msa0233790:CDS 55.0%
ATCAAGAAGGTAGGGGCCAG+GGG - chr2_2:6189641-6189660 None:intergenic 55.0%
CATCAAGAAGGTAGGGGCCA+GGG - chr2_2:6189642-6189661 None:intergenic 55.0%
ACATCAAGAAGGTAGGGGCC+AGG - chr2_2:6189643-6189662 None:intergenic 55.0%
! TCATAACCGAGGGTGATGGC+AGG + chr2_2:6189725-6189744 Msa0233790:CDS 55.0%
! GAACGCGGTTTTTGCAGCAG+TGG - chr2_2:6187802-6187821 None:intergenic 55.0%
!! GAAGGGAGTGTTTGGGGAAG+TGG - chr2_2:6187901-6187920 None:intergenic 55.0%
GAGCGGTGGTTGAGCTTGAA+GGG - chr2_2:6187918-6187937 None:intergenic 55.0%
AGAGCGGTGGTTGAGCTTGA+AGG - chr2_2:6187919-6187938 None:intergenic 55.0%
!! CGGAGATTTTGAGAGAGCGG+TGG - chr2_2:6187932-6187951 None:intergenic 55.0%
GAATTGTTGAGGTGGGGGGA+TGG - chr2_2:6187988-6188007 None:intergenic 55.0%
GGGTTCGTTAGGGGCAAATC+GGG - chr2_2:6188015-6188034 None:intergenic 55.0%
GGGGTTCGTTAGGGGCAAAT+CGG - chr2_2:6188016-6188035 None:intergenic 55.0%
!! GCCTTTTCGGGGTTCGTTAG+GGG - chr2_2:6188024-6188043 None:intergenic 55.0%
!! CGCCTTTTCGGGGTTCGTTA+GGG - chr2_2:6188025-6188044 None:intergenic 55.0%
! GTCGAAGCACTCGAACGTCA+GGG + chr2_2:6188056-6188075 Msa0233790:CDS 55.0%
!! TTTCCATTGAAGCGCCGCCA+GGG - chr2_2:6188103-6188122 None:intergenic 55.0%
!! ATTTCCATTGAAGCGCCGCC+AGG - chr2_2:6188104-6188123 None:intergenic 55.0%
AGGGAGGACGTTACGAATGG+CGG - chr2_2:6188150-6188169 None:intergenic 55.0%
ACGAGGGAGGACGTTACGAA+TGG - chr2_2:6188153-6188172 None:intergenic 55.0%
AGGTGGAATATTCGCTGCCG+AGG + chr2_2:6188181-6188200 Msa0233790:CDS 55.0%
GGTGGAATATTCGCTGCCGA+GGG + chr2_2:6188182-6188201 Msa0233790:CDS 55.0%
AAGTGGCGATGCAGACACCA+GGG - chr2_2:6188229-6188248 None:intergenic 55.0%
GAGATTAGTAGCACCTGGGC+CGG - chr2_2:6188252-6188271 None:intergenic 55.0%
CAGGTTCCCCGGAGAATGAT+TGG + chr2_2:6188329-6188348 Msa0233790:CDS 55.0%
!! GTTACCCAAGGCACCGAAAG+AGG + chr2_2:6188583-6188602 Msa0233790:CDS 55.0%
!! TGTGCCTCTTTCGGTGCCTT+GGG - chr2_2:6188590-6188609 None:intergenic 55.0%
!! ATGTGCCTCTTTCGGTGCCT+TGG - chr2_2:6188591-6188610 None:intergenic 55.0%
! GGCACCGAAAGAGGCACATT+TGG + chr2_2:6188592-6188611 Msa0233790:CDS 55.0%
TCGGGTTACTGGGAAGCTTG+AGG + chr2_2:6188874-6188893 Msa0233790:CDS 55.0%
! AGCTTGAGGCTTTTGCGAGC+CGG + chr2_2:6188888-6188907 Msa0233790:CDS 55.0%
!! CAGCCTCATGTGTCGGTTTG+TGG + chr2_2:6188962-6188981 Msa0233790:CDS 55.0%
!! GCCTCATGTGTCGGTTTGTG+GGG + chr2_2:6188964-6188983 Msa0233790:CDS 55.0%
TCCCCACAAACCGACACATG+AGG - chr2_2:6188968-6188987 None:intergenic 55.0%
TGACGAGCTTACCAATGGGG+AGG + chr2_2:6189159-6189178 Msa0233790:CDS 55.0%
GCAGAAGTCAACCACTGCCT+CGG - chr2_2:6189250-6189269 None:intergenic 55.0%
! AGGCAGTGGTTGACTTCTGC+TGG + chr2_2:6189250-6189269 Msa0233790:CDS 55.0%
!! TTCTGCTGGTCTTGGCGCTA+TGG + chr2_2:6189264-6189283 Msa0233790:CDS 55.0%
!! TCTGCTGGTCTTGGCGCTAT+GGG + chr2_2:6189265-6189284 Msa0233790:CDS 55.0%
GGTCTTGGCGCTATGGGATT+TGG + chr2_2:6189271-6189290 Msa0233790:CDS 55.0%
! ATTTGGATTGCCGGCTGCCA+TGG + chr2_2:6189288-6189307 Msa0233790:CDS 55.0%
! TTTGGATTGCCGGCTGCCAT+GGG + chr2_2:6189289-6189308 Msa0233790:CDS 55.0%
ATTGGCAACAGCAGCTCCCA+TGG - chr2_2:6189308-6189327 None:intergenic 55.0%
TGCCAATCCCGACGCTATTG+TGG + chr2_2:6189321-6189340 Msa0233790:CDS 55.0%
TGGTTGTCCAGTGGGAGGAT+CGG + chr2_2:6189455-6189474 Msa0233790:CDS 55.0%
CTCTTTGTCACACGAGCTGC+CGG - chr2_2:6189580-6189599 None:intergenic 55.0%
GGCAGCTCGTGTGACAAAGA+GGG + chr2_2:6189579-6189598 Msa0233790:CDS 55.0%
ATCAAGAAGGTAGGGGCCAG+GGG - chr2_2:6189641-6189660 None:intergenic 55.0%
CATCAAGAAGGTAGGGGCCA+GGG - chr2_2:6189642-6189661 None:intergenic 55.0%
ACATCAAGAAGGTAGGGGCC+AGG - chr2_2:6189643-6189662 None:intergenic 55.0%
! TCATAACCGAGGGTGATGGC+AGG + chr2_2:6189725-6189744 Msa0233790:CDS 55.0%
GCCCCTAACGAACCCCGAAA+AGG + chr2_2:6188020-6188039 Msa0233790:CDS 60.0%
!! GCGCCTTTTCGGGGTTCGTT+AGG - chr2_2:6188026-6188045 None:intergenic 60.0%
GACGTTCGAGTGCTTCGACG+AGG - chr2_2:6188055-6188074 None:intergenic 60.0%
! CGTCGAAGCACTCGAACGTC+AGG + chr2_2:6188055-6188074 Msa0233790:CDS 60.0%
TTACCCTGGCGGCGCTTCAA+TGG + chr2_2:6188097-6188116 Msa0233790:CDS 60.0%
GAGGACGTTACGAATGGCGG+TGG - chr2_2:6188147-6188166 None:intergenic 60.0%
GTCCTCCCTCGTCACGAACA+AGG + chr2_2:6188161-6188180 Msa0233790:CDS 60.0%
CACCTTGTTCGTGACGAGGG+AGG - chr2_2:6188166-6188185 None:intergenic 60.0%
CTCCCTCGTCACGAACAAGG+TGG + chr2_2:6188164-6188183 Msa0233790:CDS 60.0%
GGAGGAACGAGCGTAACCCT+CGG - chr2_2:6188201-6188220 None:intergenic 60.0%
GAGGGTTACGCTCGTTCCTC+CGG + chr2_2:6188200-6188219 Msa0233790:CDS 60.0%
GATGCAGACACCAGGGAGAC+CGG - chr2_2:6188222-6188241 None:intergenic 60.0%
GAAGTGGCGATGCAGACACC+AGG - chr2_2:6188230-6188249 None:intergenic 60.0%
GGTGTCTGCATCGCCACTTC+CGG + chr2_2:6188230-6188249 Msa0233790:CDS 60.0%
CATTCTCCGGGGAACCTGAC+CGG - chr2_2:6188327-6188346 None:intergenic 60.0%
! GCTTGAGGCTTTTGCGAGCC+GGG + chr2_2:6188889-6188908 Msa0233790:CDS 60.0%
GGTACAAGAGACCGAGGCAG+TGG + chr2_2:6189236-6189255 Msa0233790:CDS 60.0%
GGGTATGGTTGTCCAGTGGG+AGG + chr2_2:6189450-6189469 Msa0233790:CDS 60.0%
ATTGGCTGGGTCTCCCAGGT+AGG - chr2_2:6189506-6189525 None:intergenic 60.0%
! TCTCATTGGCTGGGTCTCCC+AGG - chr2_2:6189510-6189529 None:intergenic 60.0%
CGGCAGCTCGTGTGACAAAG+AGG + chr2_2:6189578-6189597 Msa0233790:CDS 60.0%
GCCCCTAACGAACCCCGAAA+AGG + chr2_2:6188020-6188039 Msa0233790:CDS 60.0%
!! GCGCCTTTTCGGGGTTCGTT+AGG - chr2_2:6188026-6188045 None:intergenic 60.0%
GACGTTCGAGTGCTTCGACG+AGG - chr2_2:6188055-6188074 None:intergenic 60.0%
! CGTCGAAGCACTCGAACGTC+AGG + chr2_2:6188055-6188074 Msa0233790:CDS 60.0%
TTACCCTGGCGGCGCTTCAA+TGG + chr2_2:6188097-6188116 Msa0233790:CDS 60.0%
GAGGACGTTACGAATGGCGG+TGG - chr2_2:6188147-6188166 None:intergenic 60.0%
GTCCTCCCTCGTCACGAACA+AGG + chr2_2:6188161-6188180 Msa0233790:CDS 60.0%
CACCTTGTTCGTGACGAGGG+AGG - chr2_2:6188166-6188185 None:intergenic 60.0%
CTCCCTCGTCACGAACAAGG+TGG + chr2_2:6188164-6188183 Msa0233790:CDS 60.0%
GGAGGAACGAGCGTAACCCT+CGG - chr2_2:6188201-6188220 None:intergenic 60.0%
GAGGGTTACGCTCGTTCCTC+CGG + chr2_2:6188200-6188219 Msa0233790:CDS 60.0%
GATGCAGACACCAGGGAGAC+CGG - chr2_2:6188222-6188241 None:intergenic 60.0%
GAAGTGGCGATGCAGACACC+AGG - chr2_2:6188230-6188249 None:intergenic 60.0%
GGTGTCTGCATCGCCACTTC+CGG + chr2_2:6188230-6188249 Msa0233790:CDS 60.0%
CATTCTCCGGGGAACCTGAC+CGG - chr2_2:6188327-6188346 None:intergenic 60.0%
! GCTTGAGGCTTTTGCGAGCC+GGG + chr2_2:6188889-6188908 Msa0233790:CDS 60.0%
GGTACAAGAGACCGAGGCAG+TGG + chr2_2:6189236-6189255 Msa0233790:CDS 60.0%
GGGTATGGTTGTCCAGTGGG+AGG + chr2_2:6189450-6189469 Msa0233790:CDS 60.0%
ATTGGCTGGGTCTCCCAGGT+AGG - chr2_2:6189506-6189525 None:intergenic 60.0%
! TCTCATTGGCTGGGTCTCCC+AGG - chr2_2:6189510-6189529 None:intergenic 60.0%
CGGCAGCTCGTGTGACAAAG+AGG + chr2_2:6189578-6189597 Msa0233790:CDS 60.0%
TTGAGGTGGGGGGATGGGAG+TGG - chr2_2:6187982-6188001 None:intergenic 65.0%
AGTAGCACCTGGGCCGGAAG+TGG - chr2_2:6188246-6188265 None:intergenic 65.0%
CCATCACCGGTCAGGTTCCC+CGG + chr2_2:6188318-6188337 Msa0233790:CDS 65.0%
ACAGCAGCTCCCATGGCAGC+CGG - chr2_2:6189301-6189320 None:intergenic 65.0%
TTGAGGTGGGGGGATGGGAG+TGG - chr2_2:6187982-6188001 None:intergenic 65.0%
AGTAGCACCTGGGCCGGAAG+TGG - chr2_2:6188246-6188265 None:intergenic 65.0%
CCATCACCGGTCAGGTTCCC+CGG + chr2_2:6188318-6188337 Msa0233790:CDS 65.0%
ACAGCAGCTCCCATGGCAGC+CGG - chr2_2:6189301-6189320 None:intergenic 65.0%
GCTCGTTCCTCCGGTCTCCC+TGG + chr2_2:6188209-6188228 Msa0233790:CDS 70.0%
GCAGACACCAGGGAGACCGG+AGG - chr2_2:6188219-6188238 None:intergenic 70.0%
TGCATCGCCACTTCCGGCCC+AGG + chr2_2:6188236-6188255 Msa0233790:CDS 70.0%
CCGGGGAACCTGACCGGTGA+TGG - chr2_2:6188321-6188340 None:intergenic 70.0%
GCTCGTTCCTCCGGTCTCCC+TGG + chr2_2:6188209-6188228 Msa0233790:CDS 70.0%
GCAGACACCAGGGAGACCGG+AGG - chr2_2:6188219-6188238 None:intergenic 70.0%
TGCATCGCCACTTCCGGCCC+AGG + chr2_2:6188236-6188255 Msa0233790:CDS 70.0%
CCGGGGAACCTGACCGGTGA+TGG - chr2_2:6188321-6188340 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 6187792 6189759 6187792 ID=Msa0233790;Name=Msa0233790
chr2_2 mRNA 6187792 6189759 6187792 ID=Msa0233790-mRNA-1;Parent=Msa0233790;Name=Msa0233790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|655
chr2_2 exon 6187792 6189759 6187792 ID=Msa0233790-mRNA-1:exon:2718;Parent=Msa0233790-mRNA-1
chr2_2 CDS 6187792 6189759 6187792 ID=Msa0233790-mRNA-1:cds;Parent=Msa0233790-mRNA-1
Gene Sequence

>Msa0233790

ATGGCAGCCACTGCTGCAAAAACCGCGTTCACAACCACCATCTCTTCATCTTCACCACAATCACTTCCAAACCAAAACCACGTTTTCAGAATCACTTACCCATTTTCCACTTCCCCAAACACTCCCTTCAAGCTCAACCACCGCTCTCTCAAAATCTCCGCTTCCATCTCCAACCCTACTCAAAAAACCACTCCCATCCCCCCACCTCAACAATTCATTTCCCGATTTGCCCCTAACGAACCCCGAAAAGGCGCAGATATCCTCGTCGAAGCACTCGAACGTCAGGGAGTTACAAATGTCTTCGCTTACCCTGGCGGCGCTTCAATGGAAATTCATCAAGCACTCACGCGCTCCACCGCCATTCGTAACGTCCTCCCTCGTCACGAACAAGGTGGAATATTCGCTGCCGAGGGTTACGCTCGTTCCTCCGGTCTCCCTGGTGTCTGCATCGCCACTTCCGGCCCAGGTGCTACTAATCTCGTCAGTGGACTTGCTGATGCTATGCTTGACAGTGTTCCTCTTATTGCCATCACCGGTCAGGTTCCCCGGAGAATGATTGGTACTGATGCTTTTCAAGAAACTCCGATTGTTGAGGTAACTAGATCAATCACCAAGCATAATTATCTTGTTCTTGATGTTGATGATATACCTAGGATAGTGAATGAAGCGTTTTTATTAGCTTCTAGTGGTAGACCTGGACCTGTTTTGATCGATATACCTAAGGATATTCAGCAACAGGTTTCTGTTCCGAATTGGGATCAACCTATTAGGTTAACTGGGTATATGAATAGGTTACCCAAGGCACCGAAAGAGGCACATTTGGAACAGATTGTGAGGTTGTTATTGGAGTCTAAGAAACCTGTTTTGTATGTTGGTGGTGGTAGTTTGAATTGTAGCGAGGAATTGAGGCGGTTTGTTGAGTTAACCGGTGTACCTGTTGCTAGTACTTTGATGGGGTTGGGTTCCTATCCTAGTTCGGATGAGAATTCGTTGCAGATGCTTGGGATGCATGGGACTGTTTATGCTAATTATGCGGTTGATAAGAGTGATCTTTTGCTTGCGTTTGGGGTTAGGTTTGATGATCGGGTTACTGGGAAGCTTGAGGCTTTTGCGAGCCGGGCGAAGATTGTTCATATTGATATTGATGCTGCTGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTTTGTGGGGATTTGAAGTTGGCTTTGAAGGGGATCAATCGAATTTTGGAGAGTAATGGGATAGAGAGTAAGCTTGATTTCGGAGGTTGGAGAGAAGAACTGAATGATCAGAAAGTTAGGTTTCCGATGAGTTATAAGAAGTTTGATGAAGCTATTCCTCCGCAGTATGCTATACAGGTTCTTGACGAGCTTACCAATGGGGAGGCTATCATAAGTACTGGTGTTGGACAACATCAGATGTGGGCTGCTCAGTTTTATAGGTACAAGAGACCGAGGCAGTGGTTGACTTCTGCTGGTCTTGGCGCTATGGGATTTGGATTGCCGGCTGCCATGGGAGCTGCTGTTGCCAATCCCGACGCTATTGTGGTTGACATCGATGGTGATGGAAGCTTTATGATGAATGTTCAGGAGTTGGCTACTATCAAGGTGGAGAATCTCCCTGTTAAGATATTGTTGTTGAACAATCAACACTTGGGTATGGTTGTCCAGTGGGAGGATCGGTTCTATAAAGCCAATAGAGCTCACACCTACCTGGGAGACCCAGCCAATGAGAAAGAAATATTCCCCAATATGTTGAAGTTTGCAGGTGCTTGTGGTATACCGGCAGCTCGTGTGACAAAGAGGGCAGACCTTAGAGCAGCGATTCAGAAAATGTTAGATACCCCTGGCCCCTACCTTCTTGATGTCATTGTACCGCATCAAGAGCATGTGTTGCCAATGATTCCTGCAAATGGATCCTTTGAGGATGTCATAACCGAGGGTGATGGCAGGATAAGTTACTGA
Protein sequence

>Msa0233790

MAATAAKTAFTTTISSSSPQSLPNQNHVFRITYPFSTSPNTPFKLNHRSLKISASISNPTQKTTPIPPPQQFISRFAPNEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSTAIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADAMLDSVPLIAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVNEAFLLASSGRPGPVLIDIPKDIQQQVSVPNWDQPIRLTGYMNRLPKAPKEAHLEQIVRLLLESKKPVLYVGGGSLNCSEELRRFVELTGVPVASTLMGLGSYPSSDENSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDAAEIGKNKQPHVSVCGDLKLALKGINRILESNGIESKLDFGGWREELNDQKVRFPMSYKKFDEAIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYRYKRPRQWLTSAGLGAMGFGLPAAMGAAVANPDAIVVDIDGDGSFMMNVQELATIKVENLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPANEKEIFPNMLKFAGACGIPAARVTKRADLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPANGSFEDVITEGDGRISY*