AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0192500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192500 MtrunA17_Chr2g0282681 94.000 150 9 0 12 161 1 150 1.03e-95 273
Msa0192500 MtrunA17_Chr4g0046611 65.734 143 35 6 14 148 4 140 6.72e-48 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 41 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGATTTCTAGTCATTTC+AGG 0.214636 2_1:-8322459 Msa0192500:three_prime_UTR
CAGAATGATGAAATGGTTAT+TGG 0.234836 2_1:-8323552 Msa0192500:CDS
TGTACTTCCCCAACTCATTA+AGG 0.252236 2_1:-8322700 Msa0192500:CDS
TTGGATTTAGTTCATATATA+TGG 0.254306 2_1:-8322385 Msa0192500:three_prime_UTR
TAGTCATTTCAGGTTGATTT+TGG 0.263727 2_1:-8322449 Msa0192500:three_prime_UTR
ATTAACTTATCTTAAAAGTT+TGG 0.290888 2_1:-8322271 None:intergenic
TATATATGGTAATGGCCTTA+TGG 0.313072 2_1:-8322371 Msa0192500:three_prime_UTR
CTCTCAGGTTCCTTTCAACT+TGG 0.340707 2_1:-8322404 Msa0192500:three_prime_UTR
CATGTCCCTCCCTTGTACTT+TGG 0.343100 2_1:+8322628 None:intergenic
TCTTCAAACCTTAATGAGTT+GGG 0.346774 2_1:+8322692 None:intergenic
GAAACAGTAAGAAGAGTTCA+AGG 0.410800 2_1:-8322556 Msa0192500:CDS
GTATCCCTTGCACAGCTGAT+TGG 0.412108 2_1:-8322749 Msa0192500:CDS
GTCTTCTCAGAATGATGAAA+TGG 0.422507 2_1:-8323559 Msa0192500:CDS
TTCTTCAAACCTTAATGAGT+TGG 0.423337 2_1:+8322691 None:intergenic
TTATCCGTTGTAACTCTCTC+AGG 0.427679 2_1:-8322419 Msa0192500:three_prime_UTR
CACCTCAGTATCAAGGTTAG+AGG 0.432523 2_1:+8323419 None:intergenic
GATGGCATGTGCAATTGATA+TGG 0.436483 2_1:+8323465 None:intergenic
TTAGTTCATATATATGGTAA+TGG 0.462346 2_1:-8322379 Msa0192500:three_prime_UTR
CAGCTGATTGGATTTAGATC+AGG 0.462446 2_1:-8322737 Msa0192500:CDS
AGACATATATATTCTCCATA+AGG 0.488048 2_1:+8322356 None:intergenic
TAGCAGTGTATCAAGAAGTA+CGG 0.492333 2_1:+8322586 None:intergenic
ATAATTCTGTTGTTGCTCCT+AGG 0.502338 2_1:-8322492 Msa0192500:exon
TCTCATGACTCCAAAGTACA+AGG 0.521096 2_1:-8322638 Msa0192500:CDS
AACACAACACCTCAGTATCA+AGG 0.536128 2_1:+8323412 None:intergenic
ATGGTTATTGGATGGCCACT+TGG 0.552969 2_1:-8323540 Msa0192500:CDS
CTTCAAACCTTAATGAGTTG+GGG 0.554475 2_1:+8322693 None:intergenic
TGAACTAAATCCAAGTTGAA+AGG 0.570714 2_1:+8322394 None:intergenic
TAAATCCAATCAGCTGTGCA+AGG 0.572675 2_1:+8322744 None:intergenic
TAAGAAGAGTTCAAGGAACA+AGG 0.576086 2_1:-8322549 Msa0192500:CDS
AGCAGTGTATCAAGAAGTAC+GGG 0.579439 2_1:+8322587 None:intergenic
TGAAAATGAAGAGAAACTAG+TGG 0.592179 2_1:+8323443 None:intergenic
AAATCCAATCAGCTGTGCAA+GGG 0.607337 2_1:+8322745 None:intergenic
AATGAAGAGAAACTAGTGGA+TGG 0.617629 2_1:+8323447 None:intergenic
AACCTCTAACCTTGATACTG+AGG 0.629450 2_1:-8323421 Msa0192500:intron
GAATATGAGACTTAGAGTTG+TGG 0.632329 2_1:-8323505 Msa0192500:CDS
TTCAAGAAGCTAAGACCAAG+TGG 0.634705 2_1:+8323525 None:intergenic
TGACTCCAAAGTACAAGGGA+GGG 0.644573 2_1:-8322633 Msa0192500:CDS
ATGATGAAATGGTTATTGGA+TGG 0.654206 2_1:-8323548 Msa0192500:CDS
ATGACTCCAAAGTACAAGGG+AGG 0.660763 2_1:-8322634 Msa0192500:CDS
GGAACCTGAGAGAGTTACAA+CGG 0.669873 2_1:+8322415 None:intergenic
CTCATGACTCCAAAGTACAA+GGG 0.674749 2_1:-8322637 Msa0192500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAATTCTAAGAAAAAT+AGG + chr2_1:8323555-8323574 None:intergenic 10.0%
!!! TATTTTTCTTAGAATTTAAT+TGG - chr2_1:8323554-8323573 Msa0192500:CDS 10.0%
!!! AATTAAATTCTAAGAAAAAT+AGG + chr2_1:8323555-8323574 None:intergenic 10.0%
!!! TATTTTTCTTAGAATTTAAT+TGG - chr2_1:8323554-8323573 Msa0192500:CDS 10.0%
!! AAAAAACAAGAAATTACAGA+AGG - chr2_1:8323198-8323217 Msa0192500:intron 20.0%
!! AAAAACAAGAAATTACAGAA+GGG - chr2_1:8323199-8323218 Msa0192500:intron 20.0%
!!! TTGGATTTAGTTCATATATA+TGG - chr2_1:8323482-8323501 Msa0192500:CDS 20.0%
!! TTAGTTCATATATATGGTAA+TGG - chr2_1:8323488-8323507 Msa0192500:CDS 20.0%
!! AAAAAACAAGAAATTACAGA+AGG - chr2_1:8323198-8323217 Msa0192500:intron 20.0%
!! AAAAACAAGAAATTACAGAA+GGG - chr2_1:8323199-8323218 Msa0192500:intron 20.0%
!!! TTGGATTTAGTTCATATATA+TGG - chr2_1:8323482-8323501 Msa0192500:CDS 20.0%
!! TTAGTTCATATATATGGTAA+TGG - chr2_1:8323488-8323507 Msa0192500:CDS 20.0%
! ATAGTGTTTATGTTACTAAG+TGG + chr2_1:8322529-8322548 None:intergenic 25.0%
! AGTGACTATTAACAACTTAT+AGG - chr2_1:8322612-8322631 Msa0192500:CDS 25.0%
!!! TTCAAGTGATTTTTAAGTAC+CGG + chr2_1:8322664-8322683 None:intergenic 25.0%
! TTGTTGAATTGACATTTATC+AGG + chr2_1:8322764-8322783 None:intergenic 25.0%
! ATGTCAATTCAACAAAAACA+AGG - chr2_1:8322769-8322788 Msa0192500:CDS 25.0%
! AGACATATATATTCTCCATA+AGG + chr2_1:8323514-8323533 None:intergenic 25.0%
! CTAAGAAAAATAGGTCAAAA+AGG + chr2_1:8323546-8323565 None:intergenic 25.0%
! ATAGTGTTTATGTTACTAAG+TGG + chr2_1:8322529-8322548 None:intergenic 25.0%
! AGTGACTATTAACAACTTAT+AGG - chr2_1:8322612-8322631 Msa0192500:CDS 25.0%
!!! TTCAAGTGATTTTTAAGTAC+CGG + chr2_1:8322664-8322683 None:intergenic 25.0%
! TTGTTGAATTGACATTTATC+AGG + chr2_1:8322764-8322783 None:intergenic 25.0%
! ATGTCAATTCAACAAAAACA+AGG - chr2_1:8322769-8322788 Msa0192500:CDS 25.0%
! AGACATATATATTCTCCATA+AGG + chr2_1:8323514-8323533 None:intergenic 25.0%
! CTAAGAAAAATAGGTCAAAA+AGG + chr2_1:8323546-8323565 None:intergenic 25.0%
CAGAATGATGAAATGGTTAT+TGG - chr2_1:8322315-8322334 Msa0192500:three_prime_UTR 30.0%
ATGATGAAATGGTTATTGGA+TGG - chr2_1:8322319-8322338 Msa0192500:three_prime_UTR 30.0%
TGAAAATGAAGAGAAACTAG+TGG + chr2_1:8322427-8322446 None:intergenic 30.0%
TCTTATTCCTTTCTCAACTT+TGG - chr2_1:8322477-8322496 Msa0192500:three_prime_UTR 30.0%
! TTACAAGAAGTACATTTCCT+TGG + chr2_1:8322592-8322611 None:intergenic 30.0%
GACTATTAACAACTTATAGG+CGG - chr2_1:8322615-8322634 Msa0192500:CDS 30.0%
ACTATTAACAACTTATAGGC+GGG - chr2_1:8322616-8322635 Msa0192500:CDS 30.0%
TCTTCAAACCTTAATGAGTT+GGG + chr2_1:8323178-8323197 None:intergenic 30.0%
TTCTTCAAACCTTAATGAGT+TGG + chr2_1:8323179-8323198 None:intergenic 30.0%
!! TACAGATTTCTAGTCATTTC+AGG - chr2_1:8323408-8323427 Msa0192500:intron 30.0%
!!! TAGTCATTTCAGGTTGATTT+TGG - chr2_1:8323418-8323437 Msa0192500:intron 30.0%
! TGAACTAAATCCAAGTTGAA+AGG + chr2_1:8323476-8323495 None:intergenic 30.0%
!! TATATATGGTAATGGCCTTA+TGG - chr2_1:8323496-8323515 Msa0192500:CDS 30.0%
CAGAATGATGAAATGGTTAT+TGG - chr2_1:8322315-8322334 Msa0192500:three_prime_UTR 30.0%
ATGATGAAATGGTTATTGGA+TGG - chr2_1:8322319-8322338 Msa0192500:three_prime_UTR 30.0%
TGAAAATGAAGAGAAACTAG+TGG + chr2_1:8322427-8322446 None:intergenic 30.0%
TCTTATTCCTTTCTCAACTT+TGG - chr2_1:8322477-8322496 Msa0192500:three_prime_UTR 30.0%
! TTACAAGAAGTACATTTCCT+TGG + chr2_1:8322592-8322611 None:intergenic 30.0%
GACTATTAACAACTTATAGG+CGG - chr2_1:8322615-8322634 Msa0192500:CDS 30.0%
ACTATTAACAACTTATAGGC+GGG - chr2_1:8322616-8322635 Msa0192500:CDS 30.0%
TCTTCAAACCTTAATGAGTT+GGG + chr2_1:8323178-8323197 None:intergenic 30.0%
TTCTTCAAACCTTAATGAGT+TGG + chr2_1:8323179-8323198 None:intergenic 30.0%
!! TACAGATTTCTAGTCATTTC+AGG - chr2_1:8323408-8323427 Msa0192500:intron 30.0%
!!! TAGTCATTTCAGGTTGATTT+TGG - chr2_1:8323418-8323437 Msa0192500:intron 30.0%
! TGAACTAAATCCAAGTTGAA+AGG + chr2_1:8323476-8323495 None:intergenic 30.0%
!! TATATATGGTAATGGCCTTA+TGG - chr2_1:8323496-8323515 Msa0192500:CDS 30.0%
GTCTTCTCAGAATGATGAAA+TGG - chr2_1:8322308-8322327 Msa0192500:three_prime_UTR 35.0%
GAATATGAGACTTAGAGTTG+TGG - chr2_1:8322362-8322381 Msa0192500:three_prime_UTR 35.0%
AATGAAGAGAAACTAGTGGA+TGG + chr2_1:8322423-8322442 None:intergenic 35.0%
TGTCAAACCAAAGTTGAGAA+AGG + chr2_1:8322487-8322506 None:intergenic 35.0%
!! TGTTGGTTCGACAAAAACAA+TGG + chr2_1:8322818-8322837 None:intergenic 35.0%
GATAATAGCTTGATTGGTGT+TGG + chr2_1:8322835-8322854 None:intergenic 35.0%
GGATGAGATAATAGCTTGAT+TGG + chr2_1:8322841-8322860 None:intergenic 35.0%
CGATCATCTTTATCTCTTCA+TGG + chr2_1:8322862-8322881 None:intergenic 35.0%
! GATTTTCAAATACCCGTCTA+CGG - chr2_1:8322930-8322949 Msa0192500:intron 35.0%
CTTCAAACCTTAATGAGTTG+GGG + chr2_1:8323177-8323196 None:intergenic 35.0%
TAGCAGTGTATCAAGAAGTA+CGG + chr2_1:8323284-8323303 None:intergenic 35.0%
GAAACAGTAAGAAGAGTTCA+AGG - chr2_1:8323311-8323330 Msa0192500:intron 35.0%
TAAGAAGAGTTCAAGGAACA+AGG - chr2_1:8323318-8323337 Msa0192500:intron 35.0%
ATAATTCTGTTGTTGCTCCT+AGG - chr2_1:8323375-8323394 Msa0192500:intron 35.0%
! ATCTGTAGTGAATTTTGCCT+AGG + chr2_1:8323395-8323414 None:intergenic 35.0%
GTCTTCTCAGAATGATGAAA+TGG - chr2_1:8322308-8322327 Msa0192500:three_prime_UTR 35.0%
GAATATGAGACTTAGAGTTG+TGG - chr2_1:8322362-8322381 Msa0192500:three_prime_UTR 35.0%
AATGAAGAGAAACTAGTGGA+TGG + chr2_1:8322423-8322442 None:intergenic 35.0%
TGTCAAACCAAAGTTGAGAA+AGG + chr2_1:8322487-8322506 None:intergenic 35.0%
!! TGTTGGTTCGACAAAAACAA+TGG + chr2_1:8322818-8322837 None:intergenic 35.0%
GATAATAGCTTGATTGGTGT+TGG + chr2_1:8322835-8322854 None:intergenic 35.0%
GGATGAGATAATAGCTTGAT+TGG + chr2_1:8322841-8322860 None:intergenic 35.0%
CGATCATCTTTATCTCTTCA+TGG + chr2_1:8322862-8322881 None:intergenic 35.0%
! GATTTTCAAATACCCGTCTA+CGG - chr2_1:8322930-8322949 Msa0192500:intron 35.0%
CTTCAAACCTTAATGAGTTG+GGG + chr2_1:8323177-8323196 None:intergenic 35.0%
TAGCAGTGTATCAAGAAGTA+CGG + chr2_1:8323284-8323303 None:intergenic 35.0%
GAAACAGTAAGAAGAGTTCA+AGG - chr2_1:8323311-8323330 Msa0192500:intron 35.0%
TAAGAAGAGTTCAAGGAACA+AGG - chr2_1:8323318-8323337 Msa0192500:intron 35.0%
ATAATTCTGTTGTTGCTCCT+AGG - chr2_1:8323375-8323394 Msa0192500:intron 35.0%
! ATCTGTAGTGAATTTTGCCT+AGG + chr2_1:8323395-8323414 None:intergenic 35.0%
TTCAAGAAGCTAAGACCAAG+TGG + chr2_1:8322345-8322364 None:intergenic 40.0%
GATGGCATGTGCAATTGATA+TGG + chr2_1:8322405-8322424 None:intergenic 40.0%
AACCTCTAACCTTGATACTG+AGG - chr2_1:8322446-8322465 Msa0192500:three_prime_UTR 40.0%
AACACAACACCTCAGTATCA+AGG + chr2_1:8322458-8322477 None:intergenic 40.0%
AGTACATTTCCTTGGACAGT+TGG + chr2_1:8322584-8322603 None:intergenic 40.0%
!!! TTTTAAGTACCGGTCCATTG+TGG + chr2_1:8322654-8322673 None:intergenic 40.0%
! CACGATCCTCCTTTTTCTTA+CGG - chr2_1:8322726-8322745 Msa0192500:CDS 40.0%
TTGACTCAGCCGTAAGAAAA+AGG + chr2_1:8322738-8322757 None:intergenic 40.0%
ATCGTCCTTCTACTTTCAGA+AGG - chr2_1:8322878-8322897 Msa0192500:intron 40.0%
! TGTTGCCTTCTGAAAGTAGA+AGG + chr2_1:8322886-8322905 None:intergenic 40.0%
TGAAGAAAGATGCTGTAGAC+TGG + chr2_1:8323087-8323106 None:intergenic 40.0%
AAATCCAATCAGCTGTGCAA+GGG + chr2_1:8323125-8323144 None:intergenic 40.0%
TAAATCCAATCAGCTGTGCA+AGG + chr2_1:8323126-8323145 None:intergenic 40.0%
CAGCTGATTGGATTTAGATC+AGG - chr2_1:8323130-8323149 Msa0192500:intron 40.0%
TGTACTTCCCCAACTCATTA+AGG - chr2_1:8323167-8323186 Msa0192500:intron 40.0%
TCTCATGACTCCAAAGTACA+AGG - chr2_1:8323229-8323248 Msa0192500:intron 40.0%
CTCATGACTCCAAAGTACAA+GGG - chr2_1:8323230-8323249 Msa0192500:intron 40.0%
! AGCAGTGTATCAAGAAGTAC+GGG + chr2_1:8323283-8323302 None:intergenic 40.0%
TTATCCGTTGTAACTCTCTC+AGG - chr2_1:8323448-8323467 Msa0192500:CDS 40.0%
TTCAAGAAGCTAAGACCAAG+TGG + chr2_1:8322345-8322364 None:intergenic 40.0%
GATGGCATGTGCAATTGATA+TGG + chr2_1:8322405-8322424 None:intergenic 40.0%
AACCTCTAACCTTGATACTG+AGG - chr2_1:8322446-8322465 Msa0192500:three_prime_UTR 40.0%
AACACAACACCTCAGTATCA+AGG + chr2_1:8322458-8322477 None:intergenic 40.0%
AGTACATTTCCTTGGACAGT+TGG + chr2_1:8322584-8322603 None:intergenic 40.0%
!!! TTTTAAGTACCGGTCCATTG+TGG + chr2_1:8322654-8322673 None:intergenic 40.0%
! CACGATCCTCCTTTTTCTTA+CGG - chr2_1:8322726-8322745 Msa0192500:CDS 40.0%
TTGACTCAGCCGTAAGAAAA+AGG + chr2_1:8322738-8322757 None:intergenic 40.0%
ATCGTCCTTCTACTTTCAGA+AGG - chr2_1:8322878-8322897 Msa0192500:intron 40.0%
! TGTTGCCTTCTGAAAGTAGA+AGG + chr2_1:8322886-8322905 None:intergenic 40.0%
TGAAGAAAGATGCTGTAGAC+TGG + chr2_1:8323087-8323106 None:intergenic 40.0%
AAATCCAATCAGCTGTGCAA+GGG + chr2_1:8323125-8323144 None:intergenic 40.0%
TAAATCCAATCAGCTGTGCA+AGG + chr2_1:8323126-8323145 None:intergenic 40.0%
CAGCTGATTGGATTTAGATC+AGG - chr2_1:8323130-8323149 Msa0192500:intron 40.0%
TGTACTTCCCCAACTCATTA+AGG - chr2_1:8323167-8323186 Msa0192500:intron 40.0%
TCTCATGACTCCAAAGTACA+AGG - chr2_1:8323229-8323248 Msa0192500:intron 40.0%
CTCATGACTCCAAAGTACAA+GGG - chr2_1:8323230-8323249 Msa0192500:intron 40.0%
! AGCAGTGTATCAAGAAGTAC+GGG + chr2_1:8323283-8323302 None:intergenic 40.0%
TTATCCGTTGTAACTCTCTC+AGG - chr2_1:8323448-8323467 Msa0192500:CDS 40.0%
ATGGTTATTGGATGGCCACT+TGG - chr2_1:8322327-8322346 Msa0192500:three_prime_UTR 45.0%
CACCTCAGTATCAAGGTTAG+AGG + chr2_1:8322451-8322470 None:intergenic 45.0%
ATTTCACCTCCAACTGTCCA+AGG - chr2_1:8322572-8322591 Msa0192500:CDS 45.0%
ACATTTCCTTGGACAGTTGG+AGG + chr2_1:8322581-8322600 None:intergenic 45.0%
ACTCAGCCGTAAGAAAAAGG+AGG + chr2_1:8322735-8322754 None:intergenic 45.0%
TTTCAAATACCCGTCTACGG+TGG - chr2_1:8322933-8322952 Msa0192500:intron 45.0%
! TTTGAAGTCTCCACCGTAGA+CGG + chr2_1:8322946-8322965 None:intergenic 45.0%
ATGACTCCAAAGTACAAGGG+AGG - chr2_1:8323233-8323252 Msa0192500:intron 45.0%
TGACTCCAAAGTACAAGGGA+GGG - chr2_1:8323234-8323253 Msa0192500:intron 45.0%
GGAACCTGAGAGAGTTACAA+CGG + chr2_1:8323455-8323474 None:intergenic 45.0%
CTCTCAGGTTCCTTTCAACT+TGG - chr2_1:8323463-8323482 Msa0192500:CDS 45.0%
ATGGTTATTGGATGGCCACT+TGG - chr2_1:8322327-8322346 Msa0192500:three_prime_UTR 45.0%
CACCTCAGTATCAAGGTTAG+AGG + chr2_1:8322451-8322470 None:intergenic 45.0%
ATTTCACCTCCAACTGTCCA+AGG - chr2_1:8322572-8322591 Msa0192500:CDS 45.0%
ACATTTCCTTGGACAGTTGG+AGG + chr2_1:8322581-8322600 None:intergenic 45.0%
ACTCAGCCGTAAGAAAAAGG+AGG + chr2_1:8322735-8322754 None:intergenic 45.0%
TTTCAAATACCCGTCTACGG+TGG - chr2_1:8322933-8322952 Msa0192500:intron 45.0%
! TTTGAAGTCTCCACCGTAGA+CGG + chr2_1:8322946-8322965 None:intergenic 45.0%
ATGACTCCAAAGTACAAGGG+AGG - chr2_1:8323233-8323252 Msa0192500:intron 45.0%
TGACTCCAAAGTACAAGGGA+GGG - chr2_1:8323234-8323253 Msa0192500:intron 45.0%
GGAACCTGAGAGAGTTACAA+CGG + chr2_1:8323455-8323474 None:intergenic 45.0%
CTCTCAGGTTCCTTTCAACT+TGG - chr2_1:8323463-8323482 Msa0192500:CDS 45.0%
! CTTATAGGCGGGTTCTACCA+TGG - chr2_1:8322627-8322646 Msa0192500:CDS 50.0%
GGTTCTACCATGGACCACAA+TGG - chr2_1:8322637-8322656 Msa0192500:CDS 50.0%
TACCATGGACCACAATGGAC+CGG - chr2_1:8322642-8322661 Msa0192500:CDS 50.0%
TTGAAGTCTCCACCGTAGAC+GGG + chr2_1:8322945-8322964 None:intergenic 50.0%
GTATCCCTTGCACAGCTGAT+TGG - chr2_1:8323118-8323137 Msa0192500:intron 50.0%
CATGTCCCTCCCTTGTACTT+TGG + chr2_1:8323242-8323261 None:intergenic 50.0%
! CTTATAGGCGGGTTCTACCA+TGG - chr2_1:8322627-8322646 Msa0192500:CDS 50.0%
GGTTCTACCATGGACCACAA+TGG - chr2_1:8322637-8322656 Msa0192500:CDS 50.0%
TACCATGGACCACAATGGAC+CGG - chr2_1:8322642-8322661 Msa0192500:CDS 50.0%
TTGAAGTCTCCACCGTAGAC+GGG + chr2_1:8322945-8322964 None:intergenic 50.0%
GTATCCCTTGCACAGCTGAT+TGG - chr2_1:8323118-8323137 Msa0192500:intron 50.0%
CATGTCCCTCCCTTGTACTT+TGG + chr2_1:8323242-8323261 None:intergenic 50.0%
TACCGGTCCATTGTGGTCCA+TGG + chr2_1:8322647-8322666 None:intergenic 55.0%
TACCGGTCCATTGTGGTCCA+TGG + chr2_1:8322647-8322666 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 8322273 8323616 8322273 ID=Msa0192500;Name=Msa0192500
chr2_1 mRNA 8322273 8323616 8322273 ID=Msa0192500-mRNA-1;Parent=Msa0192500;Name=Msa0192500-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|1|0.5|1|1|1|2|238|161
chr2_1 exon 8322273 8322801 8322273 ID=Msa0192500-mRNA-1:exon:3843;Parent=Msa0192500-mRNA-1
chr2_1 exon 8323422 8323616 8323422 ID=Msa0192500-mRNA-1:exon:3842;Parent=Msa0192500-mRNA-1
chr2_1 CDS 8323422 8323616 8323422 ID=Msa0192500-mRNA-1:cds;Parent=Msa0192500-mRNA-1
chr2_1 CDS 8322511 8322801 8322511 ID=Msa0192500-mRNA-1:cds;Parent=Msa0192500-mRNA-1
chr2_1 three_prime_UTR 8322273 8322510 8322273 ID=Msa0192500-mRNA-1:three_prime_utr;Parent=Msa0192500-mRNA-1
Gene Sequence

>Msa0192500

ATGTATTTTGTATTGCTTAAAACAATTGCTGTCATGTCTTCTCAGAATGATGAAATGGTTATTGGATGGCCACTTGGTCTTAGCTTCTTGAATATGAGACTTAGAGTTGTGGAAGCTTCTTCAGTGAAACCATATCAATTGCACATGCCATCCACTAGTTTCTCTTCATTTTCAACCTCTAACCTTGATACTGAGTCTACAGCATCTTTCTTCAAAGACAACAGTGTATCCCTTGCACAGCTGATTGGATTTAGATCAGGTGACAGAGAACGCATGTACTTCCCCAACTCATTAAGGTTTGAAGAAAAAAACAAGAAATTACAGAAGGGTTCTTGTTCTCATGACTCCAAAGTACAAGGGAGGGACATGTCTAGAGTCATATGCATACCCGTACTTCTTGATACACTGCTAAAGTTTAGAAACAGTAAGAAGAGTTCAAGGAACAAGGATGATATGATTAATACGTTTGAGACTAGAAATTCATAA
Protein sequence

>Msa0192500

MYFVLLKTIAVMSSQNDEMVIGWPLGLSFLNMRLRVVEASSVKPYQLHMPSTSFSSFSTSNLDTESTASFFKDNSVSLAQLIGFRSGDRERMYFPNSLRFEEKNKKLQKGSCSHDSKVQGRDMSRVICIPVLLDTLLKFRNSKKSSRNKDDMINTFETRNS*