Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223250 | XP_024632082.1 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 1.92e-93 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223250 | A0A396J1U2 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 9.17e-94 | 277 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa0223250 | 0.834640 | 2.666686e-56 | -8.615850e-47 |
| Msa0021810 | Msa0223250 | 0.801340 | 9.431619e-49 | -8.615850e-47 |
| Msa0024680 | Msa0223250 | 0.804141 | 2.490267e-49 | -8.615850e-47 |
| Msa0032840 | Msa0223250 | -0.833249 | 5.945427e-56 | -8.615850e-47 |
| Msa0036430 | Msa0223250 | 0.815463 | 9.124878e-52 | -8.615850e-47 |
| Msa0046750 | Msa0223250 | 0.821871 | 3.206013e-53 | -8.615850e-47 |
| Msa0089200 | Msa0223250 | 0.829278 | 5.628692e-55 | -8.615850e-47 |
| Msa0095380 | Msa0223250 | 0.802218 | 6.227392e-49 | -8.615850e-47 |
| Msa0110970 | Msa0223250 | 0.820608 | 6.268434e-53 | -8.615850e-47 |
| Msa0114540 | Msa0223250 | -0.813131 | 2.990151e-51 | -8.615850e-47 |
| Msa0115160 | Msa0223250 | 0.813994 | 1.931044e-51 | -8.615850e-47 |
| Msa0120330 | Msa0223250 | 0.800476 | 1.415837e-48 | -8.615850e-47 |
| Msa0124340 | Msa0223250 | 0.810225 | 1.281145e-50 | -8.615850e-47 |
| Msa0124990 | Msa0223250 | 0.801919 | 7.175502e-49 | -8.615850e-47 |
| Msa0130570 | Msa0223250 | 0.817949 | 2.529466e-52 | -8.615850e-47 |
| Msa0143430 | Msa0223250 | 0.804294 | 2.314680e-49 | -8.615850e-47 |
| Msa0172350 | Msa0223250 | 0.807802 | 4.230355e-50 | -8.615850e-47 |
| Msa0172960 | Msa0223250 | -0.819200 | 1.315539e-52 | -8.615850e-47 |
| Msa0186890 | Msa0223250 | 0.819916 | 9.031124e-53 | -8.615850e-47 |
| Msa0192500 | Msa0223250 | 0.930443 | 1.625058e-93 | -8.615850e-47 |
| Msa0203030 | Msa0223250 | 0.811937 | 5.452197e-51 | -8.615850e-47 |
| Msa0222920 | Msa0223250 | 0.825990 | 3.468233e-54 | -8.615850e-47 |
| Msa0223250 | Msa0230550 | -0.830006 | 3.744986e-55 | -8.615850e-47 |
| Msa0223250 | Msa0264350 | 0.823627 | 1.250870e-53 | -8.615850e-47 |
| Msa0223250 | Msa0267760 | 0.812511 | 4.086501e-51 | -8.615850e-47 |
| Msa0223250 | Msa0280900 | 0.826054 | 3.348307e-54 | -8.615850e-47 |
| Msa0223250 | Msa0282850 | 0.803106 | 4.084475e-49 | -8.615850e-47 |
| Msa0223250 | Msa0302450 | 0.804126 | 2.508768e-49 | -8.615850e-47 |
| Msa0223250 | Msa0313180 | 0.811139 | 8.130197e-51 | -8.615850e-47 |
| Msa0223250 | Msa0351500 | 0.802874 | 4.561149e-49 | -8.615850e-47 |
| Msa0223250 | Msa0393680 | 0.813516 | 2.461008e-51 | -8.615850e-47 |
| Msa0223250 | Msa0419820 | 0.806816 | 6.844326e-50 | -8.615850e-47 |
| Msa0223250 | Msa0423360 | -0.807565 | 4.751560e-50 | -8.615850e-47 |
| Msa0223250 | Msa0467300 | 0.805255 | 1.457983e-49 | -8.615850e-47 |
| Msa0223250 | Msa0485990 | 0.837019 | 6.654149e-57 | -8.615850e-47 |
| Msa0223250 | Msa0526710 | 0.811764 | 5.945944e-51 | -8.615850e-47 |
| Msa0223250 | Msa0541860 | 0.821248 | 4.465717e-53 | -8.615850e-47 |
| Msa0223250 | Msa0555910 | 0.806185 | 9.302250e-50 | -8.615850e-47 |
| Msa0223250 | Msa0591770 | 0.811000 | 8.711847e-51 | -8.615850e-47 |
| Msa0223250 | Msa0604360 | 0.806639 | 7.462269e-50 | -8.615850e-47 |
| Msa0223250 | Msa0609450 | 0.812197 | 4.785071e-51 | -8.615850e-47 |
| Msa0223250 | Msa0618040 | 0.828750 | 7.556705e-55 | -8.615850e-47 |
| Msa0223250 | Msa0647130 | 0.822453 | 2.349501e-53 | -8.615850e-47 |
| Msa0223250 | Msa0650090 | 0.807602 | 4.664982e-50 | -8.615850e-47 |
| Msa0223250 | Msa0677400 | 0.803246 | 3.821018e-49 | -8.615850e-47 |
| Msa0223250 | Msa0692080 | 0.813501 | 2.478673e-51 | -8.615850e-47 |
| Msa0223250 | Msa0701280 | 0.839905 | 1.197842e-57 | -8.615850e-47 |
| Msa0223250 | Msa0703230 | 0.821473 | 3.963653e-53 | -8.615850e-47 |
| Msa0223250 | Msa0760380 | 0.810536 | 1.097664e-50 | -8.615850e-47 |
| Msa0223250 | Msa0822990 | 0.818195 | 2.224327e-52 | -8.615850e-47 |
| Msa0223250 | Msa0845750 | 0.809944 | 1.473222e-50 | -8.615850e-47 |
| Msa0223250 | Msa0850960 | 0.803905 | 2.788371e-49 | -8.615850e-47 |
| Msa0223250 | Msa0862100 | 0.803509 | 3.369112e-49 | -8.615850e-47 |
| Msa0223250 | Msa0872310 | 0.801931 | 7.134866e-49 | -8.615850e-47 |
| Msa0223250 | Msa0896970 | 0.801531 | 8.617011e-49 | -8.615850e-47 |
| Msa0223250 | Msa0905550 | 0.802655 | 5.061109e-49 | -8.615850e-47 |
| Msa0223250 | Msa0930780 | 0.822457 | 2.345392e-53 | -8.615850e-47 |
| Msa0223250 | Msa0937550 | 0.800518 | 1.387841e-48 | -8.615850e-47 |
| Msa0223250 | Msa1012700 | 0.803620 | 3.196400e-49 | -8.615850e-47 |
| Msa0223250 | Msa1012810 | 0.805644 | 1.208639e-49 | -8.615850e-47 |
| Msa0223250 | Msa1018050 | 0.802762 | 4.809111e-49 | -8.615850e-47 |
| Msa0223250 | Msa1018790 | 0.807573 | 4.731501e-50 | -8.615850e-47 |
| Msa0223250 | Msa1037920 | 0.804802 | 1.813790e-49 | -8.615850e-47 |
| Msa0223250 | Msa1040120 | 0.809395 | 1.932450e-50 | -8.615850e-47 |
| Msa0223250 | Msa1040830 | 0.820664 | 6.087251e-53 | -8.615850e-47 |
| Msa0223250 | Msa1044340 | 0.810082 | 1.375542e-50 | -8.615850e-47 |
| Msa0223250 | Msa1054240 | 0.801816 | 7.530908e-49 | -8.615850e-47 |
| Msa0223250 | Msa1082700 | 0.824919 | 6.218690e-54 | -8.615850e-47 |
| Msa0223250 | Msa1097640 | 0.840838 | 6.833299e-58 | -8.615850e-47 |
| Msa0223250 | Msa1139810 | 0.856257 | 3.636735e-62 | -8.615850e-47 |
| Msa0223250 | Msa1145220 | 0.876678 | 1.153368e-68 | -8.615850e-47 |
| Msa0223250 | Msa1221560 | 0.810805 | 9.603453e-51 | -8.615850e-47 |
| Msa0223250 | Msa1226620 | 0.818756 | 1.660355e-52 | -8.615850e-47 |
| Msa0223250 | Msa1236100 | 0.803783 | 2.955702e-49 | -8.615850e-47 |
| Msa0223250 | Msa1242240 | 0.802018 | 6.846926e-49 | -8.615850e-47 |
| Msa0223250 | Msa1249870 | 0.800547 | 1.369224e-48 | -8.615850e-47 |
| Msa0223250 | Msa1252190 | 0.802271 | 6.072441e-49 | -8.615850e-47 |
| Msa0223250 | Msa1292830 | 0.800055 | 1.724770e-48 | -8.615850e-47 |
| Msa0223250 | Msa1390310 | 0.803134 | 4.030042e-49 | -8.615850e-47 |
| Msa0223250 | Msa1466990 | 0.824480 | 7.888582e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223250 | MtrunA17_Chr2g0282681 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 1.77e-97 | 277 |
| Msa0223250 | MtrunA17_Chr4g0046611 | 63.448 | 145 | 39 | 6 | 1 | 137 | 2 | 140 | 1.73e-47 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGATTTCTAGTCATTTC+AGG | 0.214636 | 2_1:-72792935 | Msa0223250:three_prime_UTR |
| CAGAATGATGAAATGGTTAT+TGG | 0.234836 | 2_1:-72794029 | Msa0223250:CDS |
| TGTACTTCCCCAACTCATTA+AGG | 0.252236 | 2_1:-72793176 | Msa0223250:CDS |
| TTGGATTTAGTTCATATATA+TGG | 0.254306 | 2_1:-72792861 | Msa0223250:three_prime_UTR |
| TAGTCATTTCAGGTTGATTT+TGG | 0.263727 | 2_1:-72792925 | Msa0223250:three_prime_UTR |
| ATTAACTTATCTTAAAAGTT+TGG | 0.297709 | 2_1:-72792747 | None:intergenic |
| TATATATGGTAATGGCCTTA+TGG | 0.313072 | 2_1:-72792847 | Msa0223250:three_prime_UTR |
| CTCTCAGGTTCCTTTCAACT+TGG | 0.340707 | 2_1:-72792880 | Msa0223250:three_prime_UTR |
| CATGTCCCTCCCTTGTACTT+TGG | 0.343100 | 2_1:+72793104 | None:intergenic |
| TCTTCAAACCTTAATGAGTT+GGG | 0.346774 | 2_1:+72793168 | None:intergenic |
| GAAACAGTAAGAAGAGTTCA+AGG | 0.410800 | 2_1:-72793032 | Msa0223250:CDS |
| GTATCCCTTGCACAGCTGAT+TGG | 0.412108 | 2_1:-72793225 | Msa0223250:CDS |
| GTCTTCTCAGAATGATGAAA+TGG | 0.422507 | 2_1:-72794036 | Msa0223250:intron |
| TTCTTCAAACCTTAATGAGT+TGG | 0.423337 | 2_1:+72793167 | None:intergenic |
| TTATCCGTTGTAACTCTCTC+AGG | 0.427679 | 2_1:-72792895 | Msa0223250:three_prime_UTR |
| CACCTCAGTATCAAGGTTAG+AGG | 0.432523 | 2_1:+72793896 | None:intergenic |
| GATGGCATGTGCAATTGATA+TGG | 0.436483 | 2_1:+72793942 | None:intergenic |
| TTAGTTCATATATATGGTAA+TGG | 0.462346 | 2_1:-72792855 | Msa0223250:three_prime_UTR |
| CAGCTGATTGGATTTAGATC+AGG | 0.462446 | 2_1:-72793213 | Msa0223250:CDS |
| AGACATATATATTCTCCATA+AGG | 0.488048 | 2_1:+72792832 | None:intergenic |
| TAGCAGTGTATCAAGAAGTA+CGG | 0.492333 | 2_1:+72793062 | None:intergenic |
| ATAATTCTGTTGTTGCTCCT+AGG | 0.502338 | 2_1:-72792968 | Msa0223250:exon |
| TCTCATGACTCCAAAGTACA+AGG | 0.521096 | 2_1:-72793114 | Msa0223250:CDS |
| AACACAACACCTCAGTATCA+AGG | 0.536128 | 2_1:+72793889 | None:intergenic |
| ATGGTTATTGGATGGCCACT+TGG | 0.552969 | 2_1:-72794017 | Msa0223250:CDS |
| AATTATTACCTCTGTAACCA+TGG | 0.553319 | 2_1:+72795330 | None:intergenic |
| CTTCAAACCTTAATGAGTTG+GGG | 0.554475 | 2_1:+72793169 | None:intergenic |
| TGAACTAAATCCAAGTTGAA+AGG | 0.570714 | 2_1:+72792870 | None:intergenic |
| TAAATCCAATCAGCTGTGCA+AGG | 0.572675 | 2_1:+72793220 | None:intergenic |
| TAAGAAGAGTTCAAGGAACA+AGG | 0.576086 | 2_1:-72793025 | Msa0223250:CDS |
| AGCAGTGTATCAAGAAGTAC+GGG | 0.579439 | 2_1:+72793063 | None:intergenic |
| TGAAAATGAAGAGAAACTAG+TGG | 0.592179 | 2_1:+72793920 | None:intergenic |
| AAATCCAATCAGCTGTGCAA+GGG | 0.607337 | 2_1:+72793221 | None:intergenic |
| AATGAAGAGAAACTAGTGGA+TGG | 0.617629 | 2_1:+72793924 | None:intergenic |
| AACCTCTAACCTTGATACTG+AGG | 0.629450 | 2_1:-72793898 | Msa0223250:intron |
| GAATATGAGACTTAGAGTTG+TGG | 0.632329 | 2_1:-72793982 | Msa0223250:CDS |
| TTCAAGAAGCTAAGACCAAG+TGG | 0.634705 | 2_1:+72794002 | None:intergenic |
| TCAGGGAGGCAGAGACACCA+TGG | 0.635878 | 2_1:-72795347 | Msa0223250:exon |
| TGACTCCAAAGTACAAGGGA+GGG | 0.644573 | 2_1:-72793109 | Msa0223250:CDS |
| TTCACATCAGTTTCTCAGGG+AGG | 0.653000 | 2_1:-72795361 | Msa0223250:five_prime_UTR |
| ATGATGAAATGGTTATTGGA+TGG | 0.654206 | 2_1:-72794025 | Msa0223250:CDS |
| CAGAGACACCATGGTTACAG+AGG | 0.658814 | 2_1:-72795338 | Msa0223250:intron |
| ATGACTCCAAAGTACAAGGG+AGG | 0.660763 | 2_1:-72793110 | Msa0223250:CDS |
| GGAACCTGAGAGAGTTACAA+CGG | 0.669873 | 2_1:+72792891 | None:intergenic |
| CTCATGACTCCAAAGTACAA+GGG | 0.674749 | 2_1:-72793113 | Msa0223250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGTATTTTTTTCATT+TGG | - | chr2_1:72793434-72793453 | Msa0223250:intron | 10.0% |
| !! | ATTTATATAAATATAGACAA+TGG | + | chr2_1:72793826-72793845 | None:intergenic | 10.0% |
| !! | ATTTATATAAATACATTGAT+AGG | - | chr2_1:72793834-72793853 | Msa0223250:intron | 10.0% |
| !!! | AATTAAATTCTAAGAAAAAT+AGG | + | chr2_1:72795345-72795364 | None:intergenic | 10.0% |
| !!! | TATTTTTCTTAGAATTTAAT+TGG | - | chr2_1:72795344-72795363 | Msa0223250:exon | 10.0% |
| !!! | ATTAATAGTTTAAAGTTGAA+AGG | - | chr2_1:72793047-72793066 | Msa0223250:CDS | 15.0% |
| !! | TTACTAACATATATAACATA+AGG | + | chr2_1:72793124-72793143 | None:intergenic | 15.0% |
| !!! | CTAAATTTGTATTTTTCAAA+TGG | - | chr2_1:72793367-72793386 | Msa0223250:intron | 15.0% |
| !! | TGTACTACATAAAAAAATAT+AGG | + | chr2_1:72793656-72793675 | None:intergenic | 15.0% |
| !! | AAAATTTACTATATGATTGA+GGG | + | chr2_1:72793800-72793819 | None:intergenic | 15.0% |
| !! | AAAAATTTACTATATGATTG+AGG | + | chr2_1:72793801-72793820 | None:intergenic | 15.0% |
| !!! | TAATCATTTTCTAATTGTTA+AGG | - | chr2_1:72793995-72794014 | Msa0223250:CDS | 15.0% |
| !!! | AATCATTTTCTAATTGTTAA+GGG | - | chr2_1:72793996-72794015 | Msa0223250:CDS | 15.0% |
| !!! | AAAGATCATGACATTTTTTT+GGG | - | chr2_1:72792978-72792997 | Msa0223250:exon | 20.0% |
| !! | ATGTTAGTAAAACTTATAAG+AGG | - | chr2_1:72793134-72793153 | Msa0223250:CDS | 20.0% |
| !! | TTATGTAGTACAGAAAATAT+TGG | - | chr2_1:72793664-72793683 | Msa0223250:intron | 20.0% |
| !! | TATGTAGTACAGAAAATATT+GGG | - | chr2_1:72793665-72793684 | Msa0223250:intron | 20.0% |
| !! | AATAATGATCATCTAGATAA+AGG | + | chr2_1:72793708-72793727 | None:intergenic | 20.0% |
| !! | AAAATATCTAGTTGAATGAT+TGG | - | chr2_1:72793948-72793967 | Msa0223250:CDS | 20.0% |
| !! | AAAAAACAAGAAATTACAGA+AGG | - | chr2_1:72794988-72795007 | Msa0223250:intron | 20.0% |
| !! | AAAAACAAGAAATTACAGAA+GGG | - | chr2_1:72794989-72795008 | Msa0223250:intron | 20.0% |
| !!! | TTGGATTTAGTTCATATATA+TGG | - | chr2_1:72795272-72795291 | Msa0223250:intron | 20.0% |
| !! | TTAGTTCATATATATGGTAA+TGG | - | chr2_1:72795278-72795297 | Msa0223250:intron | 20.0% |
| ! | AAAAAAAAACAAGTCAAGCA+TGG | + | chr2_1:72792829-72792848 | None:intergenic | 25.0% |
| !!! | GAAAGATCATGACATTTTTT+TGG | - | chr2_1:72792977-72792996 | Msa0223250:exon | 25.0% |
| ! | TTCATCTTCATGAAATAGAT+TGG | + | chr2_1:72793182-72793201 | None:intergenic | 25.0% |
| ! | GATGAATTAATCAGTTTGTA+AGG | - | chr2_1:72793196-72793215 | Msa0223250:CDS | 25.0% |
| ! | CAATAAAAAACACACATTCT+AGG | + | chr2_1:72793300-72793319 | None:intergenic | 25.0% |
| ! | TAGGATCATAATAATAGTAC+TGG | - | chr2_1:72793499-72793518 | Msa0223250:intron | 25.0% |
| !! | ATTAAAATCCATCAGAGTTT+TGG | - | chr2_1:72793556-72793575 | Msa0223250:intron | 25.0% |
| ! | ATGTAGTACAGAAAATATTG+GGG | - | chr2_1:72793666-72793685 | Msa0223250:intron | 25.0% |
| !! | TGATCATTATTTGACAGTTT+TGG | - | chr2_1:72793717-72793736 | Msa0223250:intron | 25.0% |
| ! | TCAAAATGAACAATCTATTC+TGG | + | chr2_1:72793761-72793780 | None:intergenic | 25.0% |
| !!! | AATTATTTTAGATGTACAGC+AGG | - | chr2_1:72793915-72793934 | Msa0223250:CDS | 25.0% |
| ! | TCAATAAATATGCATGTATG+TGG | + | chr2_1:72794034-72794053 | None:intergenic | 25.0% |
| ! | ATAGTGTTTATGTTACTAAG+TGG | + | chr2_1:72794318-72794337 | None:intergenic | 25.0% |
| ! | AGTGACTATTAACAACTTAT+AGG | - | chr2_1:72794401-72794420 | Msa0223250:intron | 25.0% |
| !!! | TTCAAGTGATTTTTAAGTAC+CGG | + | chr2_1:72794453-72794472 | None:intergenic | 25.0% |
| !! | TGTTGAATTGACATTTTATC+AGG | + | chr2_1:72794553-72794572 | None:intergenic | 25.0% |
| ! | ATGTCAATTCAACAAAAACA+AGG | - | chr2_1:72794559-72794578 | Msa0223250:intron | 25.0% |
| ! | AGACATATATATTCTCCATA+AGG | + | chr2_1:72795304-72795323 | None:intergenic | 25.0% |
| ! | CTAAGAAAAATAGGTCAAAA+AGG | + | chr2_1:72795336-72795355 | None:intergenic | 25.0% |
| ! | ATTTTCACATCAGTTTCTCA+GGG | - | chr2_1:72792769-72792788 | Msa0223250:three_prime_UTR | 30.0% |
| AATTATTACCTCTGTAACCA+TGG | + | chr2_1:72792806-72792825 | None:intergenic | 30.0% | |
| TAAACCAGCTCAAAATAGTA+TGG | + | chr2_1:72792932-72792951 | None:intergenic | 30.0% | |
| TTCATATAGAGAAAAGCAAG+AGG | + | chr2_1:72793092-72793111 | None:intergenic | 30.0% | |
| TTTCTATCATGTTAGACTGT+CGG | - | chr2_1:72793234-72793253 | Msa0223250:CDS | 30.0% | |
| TCCTAGCAAAGAACATTAAT+GGG | + | chr2_1:72793484-72793503 | None:intergenic | 30.0% | |
| ATCCTAGCAAAGAACATTAA+TGG | + | chr2_1:72793485-72793504 | None:intergenic | 30.0% | |
| TAGGACATGTCGATATTATT+AGG | + | chr2_1:72793637-72793656 | None:intergenic | 30.0% | |
| ! | TGTTCATTTTGAGCATAAGT+AGG | - | chr2_1:72793769-72793788 | Msa0223250:intron | 30.0% |
| CAGAATGATGAAATGGTTAT+TGG | - | chr2_1:72794104-72794123 | Msa0223250:intron | 30.0% | |
| ATGATGAAATGGTTATTGGA+TGG | - | chr2_1:72794108-72794127 | Msa0223250:intron | 30.0% | |
| TGAAAATGAAGAGAAACTAG+TGG | + | chr2_1:72794216-72794235 | None:intergenic | 30.0% | |
| TCTTATTCCTTTCTCAACTT+TGG | - | chr2_1:72794266-72794285 | Msa0223250:intron | 30.0% | |
| ! | TTACAAGAAGTACATTTCCT+TGG | + | chr2_1:72794381-72794400 | None:intergenic | 30.0% |
| GACTATTAACAACTTATAGG+CGG | - | chr2_1:72794404-72794423 | Msa0223250:intron | 30.0% | |
| ACTATTAACAACTTATAGGC+GGG | - | chr2_1:72794405-72794424 | Msa0223250:intron | 30.0% | |
| TCTTCAAACCTTAATGAGTT+GGG | + | chr2_1:72794968-72794987 | None:intergenic | 30.0% | |
| TTCTTCAAACCTTAATGAGT+TGG | + | chr2_1:72794969-72794988 | None:intergenic | 30.0% | |
| !! | TACAGATTTCTAGTCATTTC+AGG | - | chr2_1:72795198-72795217 | Msa0223250:intron | 30.0% |
| !!! | TAGTCATTTCAGGTTGATTT+TGG | - | chr2_1:72795208-72795227 | Msa0223250:intron | 30.0% |
| ! | TGAACTAAATCCAAGTTGAA+AGG | + | chr2_1:72795266-72795285 | None:intergenic | 30.0% |
| !! | TATATATGGTAATGGCCTTA+TGG | - | chr2_1:72795286-72795305 | Msa0223250:intron | 30.0% |
| ! | CATTTTCACATCAGTTTCTC+AGG | - | chr2_1:72792768-72792787 | Msa0223250:three_prime_UTR | 35.0% |
| TGCTGAATGGCAAAAGAAAA+TGG | + | chr2_1:72792901-72792920 | None:intergenic | 35.0% | |
| !! | TTGTCCATACTATTTTGAGC+TGG | - | chr2_1:72792925-72792944 | Msa0223250:three_prime_UTR | 35.0% |
| CCTAGCAAAGAACATTAATG+GGG | + | chr2_1:72793483-72793502 | None:intergenic | 35.0% | |
| TATTGGGGTGAAAAAAATGC+TGG | - | chr2_1:72793681-72793700 | Msa0223250:intron | 35.0% | |
| ! | ATTCTGGCTATGTAACTCTT+AGG | + | chr2_1:72793745-72793764 | None:intergenic | 35.0% |
| ! | TCATTTTGAGCATAAGTAGG+AGG | - | chr2_1:72793772-72793791 | Msa0223250:intron | 35.0% |
| ! | CATTTTGAGCATAAGTAGGA+GGG | - | chr2_1:72793773-72793792 | Msa0223250:intron | 35.0% |
| TAAGTGAGCTTCACTTTATG+TGG | - | chr2_1:72793859-72793878 | Msa0223250:intron | 35.0% | |
| AAGTGAGCTTCACTTTATGT+GGG | - | chr2_1:72793860-72793879 | Msa0223250:intron | 35.0% | |
| ! | TATTTAGTTCCCTCCTACTT+TGG | + | chr2_1:72793892-72793911 | None:intergenic | 35.0% |
| GTCTTCTCAGAATGATGAAA+TGG | - | chr2_1:72794097-72794116 | Msa0223250:intron | 35.0% | |
| GAATATGAGACTTAGAGTTG+TGG | - | chr2_1:72794151-72794170 | Msa0223250:intron | 35.0% | |
| AATGAAGAGAAACTAGTGGA+TGG | + | chr2_1:72794212-72794231 | None:intergenic | 35.0% | |
| TGTCAAACCAAAGTTGAGAA+AGG | + | chr2_1:72794276-72794295 | None:intergenic | 35.0% | |
| GATAATAGCTTGATTGGTGT+TGG | + | chr2_1:72794625-72794644 | None:intergenic | 35.0% | |
| GGATGAGATAATAGCTTGAT+TGG | + | chr2_1:72794631-72794650 | None:intergenic | 35.0% | |
| CGATCATCTTTATCTCTTCA+TGG | + | chr2_1:72794652-72794671 | None:intergenic | 35.0% | |
| ! | GATTTTCAAATACCCGTCTA+CGG | - | chr2_1:72794720-72794739 | Msa0223250:intron | 35.0% |
| CTTCAAACCTTAATGAGTTG+GGG | + | chr2_1:72794967-72794986 | None:intergenic | 35.0% | |
| TAGCAGTGTATCAAGAAGTA+CGG | + | chr2_1:72795074-72795093 | None:intergenic | 35.0% | |
| GAAACAGTAAGAAGAGTTCA+AGG | - | chr2_1:72795101-72795120 | Msa0223250:intron | 35.0% | |
| TAAGAAGAGTTCAAGGAACA+AGG | - | chr2_1:72795108-72795127 | Msa0223250:intron | 35.0% | |
| ATAATTCTGTTGTTGCTCCT+AGG | - | chr2_1:72795165-72795184 | Msa0223250:intron | 35.0% | |
| ! | ATCTGTAGTGAATTTTGCCT+AGG | + | chr2_1:72795185-72795204 | None:intergenic | 35.0% |
| TATGGACAAGAGATGCTGAA+TGG | + | chr2_1:72792914-72792933 | None:intergenic | 40.0% | |
| TATCATGTTAGACTGTCGGT+AGG | - | chr2_1:72793238-72793257 | Msa0223250:CDS | 40.0% | |
| CCCCATTAATGTTCTTTGCT+AGG | - | chr2_1:72793480-72793499 | Msa0223250:intron | 40.0% | |
| TTCAAGAAGCTAAGACCAAG+TGG | + | chr2_1:72794134-72794153 | None:intergenic | 40.0% | |
| GATGGCATGTGCAATTGATA+TGG | + | chr2_1:72794194-72794213 | None:intergenic | 40.0% | |
| AACCTCTAACCTTGATACTG+AGG | - | chr2_1:72794235-72794254 | Msa0223250:intron | 40.0% | |
| AACACAACACCTCAGTATCA+AGG | + | chr2_1:72794247-72794266 | None:intergenic | 40.0% | |
| AGTACATTTCCTTGGACAGT+TGG | + | chr2_1:72794373-72794392 | None:intergenic | 40.0% | |
| !!! | TTTTAAGTACCGGTCCATTG+TGG | + | chr2_1:72794443-72794462 | None:intergenic | 40.0% |
| CACGATCCTCCTTATTCTTA+CGG | - | chr2_1:72794515-72794534 | Msa0223250:intron | 40.0% | |
| TTGACTCAGCCGTAAGAATA+AGG | + | chr2_1:72794527-72794546 | None:intergenic | 40.0% | |
| !! | TGTTGGTTCGACAAAGACAA+TGG | + | chr2_1:72794608-72794627 | None:intergenic | 40.0% |
| ATCGTCCTTCTACTTTCAGA+AGG | - | chr2_1:72794668-72794687 | Msa0223250:intron | 40.0% | |
| ! | TGTTGCCTTCTGAAAGTAGA+AGG | + | chr2_1:72794676-72794695 | None:intergenic | 40.0% |
| TGAAGAAAGATGCTGTAGAC+TGG | + | chr2_1:72794877-72794896 | None:intergenic | 40.0% | |
| AAATCCAATCAGCTGTGCAA+GGG | + | chr2_1:72794915-72794934 | None:intergenic | 40.0% | |
| TAAATCCAATCAGCTGTGCA+AGG | + | chr2_1:72794916-72794935 | None:intergenic | 40.0% | |
| CAGCTGATTGGATTTAGATC+AGG | - | chr2_1:72794920-72794939 | Msa0223250:intron | 40.0% | |
| TGTACTTCCCCAACTCATTA+AGG | - | chr2_1:72794957-72794976 | Msa0223250:intron | 40.0% | |
| TCTCATGACTCCAAAGTACA+AGG | - | chr2_1:72795019-72795038 | Msa0223250:intron | 40.0% | |
| CTCATGACTCCAAAGTACAA+GGG | - | chr2_1:72795020-72795039 | Msa0223250:intron | 40.0% | |
| ! | AGCAGTGTATCAAGAAGTAC+GGG | + | chr2_1:72795073-72795092 | None:intergenic | 40.0% |
| TTATCCGTTGTAACTCTCTC+AGG | - | chr2_1:72795238-72795257 | Msa0223250:intron | 40.0% | |
| TTCACATCAGTTTCTCAGGG+AGG | - | chr2_1:72792772-72792791 | Msa0223250:three_prime_UTR | 45.0% | |
| TCAGCACACCAAAACTCTGA+TGG | + | chr2_1:72793567-72793586 | None:intergenic | 45.0% | |
| ATGTGGGCCAAATCCAAAGT+AGG | - | chr2_1:72793876-72793895 | Msa0223250:intron | 45.0% | |
| GTTCCCTCCTACTTTGGATT+TGG | + | chr2_1:72793886-72793905 | None:intergenic | 45.0% | |
| ATGGTTATTGGATGGCCACT+TGG | - | chr2_1:72794116-72794135 | Msa0223250:intron | 45.0% | |
| CACCTCAGTATCAAGGTTAG+AGG | + | chr2_1:72794240-72794259 | None:intergenic | 45.0% | |
| ATTTCACCTCCAACTGTCCA+AGG | - | chr2_1:72794361-72794380 | Msa0223250:intron | 45.0% | |
| ACATTTCCTTGGACAGTTGG+AGG | + | chr2_1:72794370-72794389 | None:intergenic | 45.0% | |
| ! | CTTATAGGCGGGTTCTACTA+TGG | - | chr2_1:72794416-72794435 | Msa0223250:intron | 45.0% |
| GGTTCTACTATGGACCACAA+TGG | - | chr2_1:72794426-72794445 | Msa0223250:intron | 45.0% | |
| TACTATGGACCACAATGGAC+CGG | - | chr2_1:72794431-72794450 | Msa0223250:intron | 45.0% | |
| ACTCAGCCGTAAGAATAAGG+AGG | + | chr2_1:72794524-72794543 | None:intergenic | 45.0% | |
| TTTCAAATACCCGTCTACGG+TGG | - | chr2_1:72794723-72794742 | Msa0223250:intron | 45.0% | |
| ! | TTTGAAGTCTCCACCGTAGA+CGG | + | chr2_1:72794736-72794755 | None:intergenic | 45.0% |
| ATGACTCCAAAGTACAAGGG+AGG | - | chr2_1:72795023-72795042 | Msa0223250:intron | 45.0% | |
| TGACTCCAAAGTACAAGGGA+GGG | - | chr2_1:72795024-72795043 | Msa0223250:intron | 45.0% | |
| GGAACCTGAGAGAGTTACAA+CGG | + | chr2_1:72795245-72795264 | None:intergenic | 45.0% | |
| CTCTCAGGTTCCTTTCAACT+TGG | - | chr2_1:72795253-72795272 | Msa0223250:intron | 45.0% | |
| CAGAGACACCATGGTTACAG+AGG | - | chr2_1:72792795-72792814 | Msa0223250:three_prime_UTR | 50.0% | |
| TGGGCCAAATCCAAAGTAGG+AGG | - | chr2_1:72793879-72793898 | Msa0223250:intron | 50.0% | |
| GGGCCAAATCCAAAGTAGGA+GGG | - | chr2_1:72793880-72793899 | Msa0223250:intron | 50.0% | |
| TTGAAGTCTCCACCGTAGAC+GGG | + | chr2_1:72794735-72794754 | None:intergenic | 50.0% | |
| GTATCCCTTGCACAGCTGAT+TGG | - | chr2_1:72794908-72794927 | Msa0223250:intron | 50.0% | |
| CATGTCCCTCCCTTGTACTT+TGG | + | chr2_1:72795032-72795051 | None:intergenic | 50.0% | |
| TCAGGGAGGCAGAGACACCA+TGG | - | chr2_1:72792786-72792805 | Msa0223250:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 72792749 | 72795406 | 72792749 | ID=Msa0223250;Name=Msa0223250 |
| chr2_1 | mRNA | 72792749 | 72795406 | 72792749 | ID=Msa0223250-mRNA-1;Parent=Msa0223250;Name=Msa0223250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=56|1|1|1|0.5|0.33|3|238|150 |
| chr2_1 | exon | 72792749 | 72793277 | 72792749 | ID=Msa0223250-mRNA-1:exon:21167;Parent=Msa0223250-mRNA-1 |
| chr2_1 | exon | 72793899 | 72794048 | 72793899 | ID=Msa0223250-mRNA-1:exon:21166;Parent=Msa0223250-mRNA-1 |
| chr2_1 | exon | 72795339 | 72795406 | 72795339 | ID=Msa0223250-mRNA-1:exon:21165;Parent=Msa0223250-mRNA-1 |
| chr2_1 | five_prime_UTR | 72795351 | 72795406 | 72795351 | ID=Msa0223250-mRNA-1:five_prime_utr;Parent=Msa0223250-mRNA-1 |
| chr2_1 | CDS | 72795339 | 72795350 | 72795339 | ID=Msa0223250-mRNA-1:cds;Parent=Msa0223250-mRNA-1 |
| chr2_1 | CDS | 72793899 | 72794048 | 72793899 | ID=Msa0223250-mRNA-1:cds;Parent=Msa0223250-mRNA-1 |
| chr2_1 | CDS | 72792987 | 72793277 | 72792987 | ID=Msa0223250-mRNA-1:cds;Parent=Msa0223250-mRNA-1 |
| chr2_1 | three_prime_UTR | 72792749 | 72792986 | 72792749 | ID=Msa0223250-mRNA-1:three_prime_utr;Parent=Msa0223250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
