AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221560 MtrunA17_Chr4g0073141 97.266 512 13 1 1 512 1 511 0.0 1028
Msa1221560 MtrunA17_Chr6g0453511 96.552 145 5 0 308 452 1 145 2.49e-94 283
Msa1221560 MtrunA17_Chr5g0413841 38.095 420 153 16 9 408 9 341 3.68e-67 221
Msa1221560 MtrunA17_Chr6g0451161 40.110 364 132 13 58 407 66 357 1.13e-63 212
Msa1221560 MtrunA17_Chr4g0059281 36.160 401 140 15 16 407 6 299 1.60e-61 204
Msa1221560 MtrunA17_Chr8g0364881 40.483 373 123 18 63 407 5 306 6.74e-60 201
Msa1221560 MtrunA17_Chr1g0191601 42.177 147 77 2 47 191 33 173 5.42e-30 120
Msa1221560 MtrunA17_Chr3g0132491 41.304 138 72 3 56 191 52 182 1.19e-28 117
Msa1221560 MtrunA17_Chr7g0273051 39.073 151 79 4 43 191 27 166 2.90e-26 110
Msa1221560 MtrunA17_Chr5g0411081 40.136 147 78 3 60 198 56 200 1.38e-25 108
Msa1221560 MtrunA17_Chr8g0336881 44.118 136 70 3 59 191 19 151 9.82e-25 104
Msa1221560 MtrunA17_Chr6g0486651 34.911 169 91 6 61 222 39 195 1.50e-23 102
Msa1221560 MtrunA17_Chr5g0426871 39.850 133 73 3 62 190 53 182 2.09e-23 102
Msa1221560 MtrunA17_Chr6g0470751 35.583 163 94 3 60 220 48 201 3.26e-23 100
Msa1221560 MtrunA17_Chr3g0133001 56.944 72 30 1 116 187 128 198 8.59e-23 100
Msa1221560 MtrunA17_Chr4g0050041 36.184 152 77 4 58 193 53 200 1.51e-22 99.0
Msa1221560 MtrunA17_Chr5g0426781 33.149 181 88 6 25 191 39 200 1.77e-22 99.0
Msa1221560 MtrunA17_Chr3g0126931 31.633 196 116 5 18 209 3 184 1.86e-22 99.0
Msa1221560 MtrunA17_Chr8g0345361 33.125 160 95 5 37 187 3 159 3.10e-22 95.9
Msa1221560 MtrunA17_Chr5g0426881 35.766 137 81 2 57 191 58 189 6.14e-22 97.8
Msa1221560 MtrunA17_Chr3g0123631 39.231 130 70 2 66 193 1 123 6.32e-22 93.2
Msa1221560 MtrunA17_Chr5g0427431 53.247 77 35 1 111 187 127 202 7.09e-22 98.2
Msa1221560 MtrunA17_Chr3g0123641 39.231 130 70 2 66 193 1 123 7.85e-22 94.4
Msa1221560 MtrunA17_Chr8g0381731 51.807 83 39 1 111 193 141 222 8.59e-22 95.9
Msa1221560 MtrunA17_Chr8g0366561 31.720 186 120 5 60 239 56 240 1.27e-21 96.3
Msa1221560 MtrunA17_Chr3g0128771 34.810 158 81 6 51 205 39 177 8.54e-21 89.7
Msa1221560 MtrunA17_Chr1g0203541 49.383 81 37 1 116 192 103 183 1.55e-20 90.1
Msa1221560 MtrunA17_Chr7g0244851 34.211 152 80 4 44 191 18 153 1.58e-20 89.0
Msa1221560 MtrunA17_Chr4g0030831 35.172 145 78 3 65 193 16 160 3.48e-20 87.8
Msa1221560 MtrunA17_Chr2g0279431 33.553 152 84 3 58 193 59 209 8.29e-20 91.3
Msa1221560 MtrunA17_Chr2g0325141 36.029 136 78 4 63 190 2 136 1.80e-19 85.1
Msa1221560 MtrunA17_Chr7g0276591 36.054 147 77 5 53 190 8 146 2.71e-19 88.2
Msa1221560 MtrunA17_Chr2g0325161 38.053 113 64 2 84 190 56 168 3.24e-19 87.0
Msa1221560 MtrunA17_Chr4g0067591 43.396 106 49 2 118 215 80 182 3.78e-19 87.4
Msa1221560 MtrunA17_Chr2g0295571 35.119 168 94 4 26 188 5 162 4.09e-19 87.8
Msa1221560 MtrunA17_Chr4g0013561 46.053 76 39 1 116 191 83 156 2.27e-18 84.3
Msa1221560 MtrunA17_Chr2g0307411 47.297 74 35 1 118 191 77 146 2.33e-18 83.6
Msa1221560 MtrunA17_Chr3g0118071 42.529 87 49 1 105 190 63 149 2.92e-18 83.6
Msa1221560 MtrunA17_Chr3g0105441 45.000 80 41 1 115 191 99 178 6.76e-18 83.6
Msa1221560 MtrunA17_Chr3g0118061 41.489 94 53 2 98 190 57 149 8.06e-18 82.4
Msa1221560 MtrunA17_Chr5g0433861 47.368 76 37 1 118 190 76 151 2.04e-17 83.2
Msa1221560 MtrunA17_Chr7g0274741 37.273 110 59 2 118 225 70 171 2.09e-17 80.1
Msa1221560 MtrunA17_Chr2g0301871 55.224 67 28 1 127 191 63 129 2.59e-17 82.8
Msa1221560 MtrunA17_Chr8g0383881 31.293 147 95 1 45 191 36 176 4.21e-17 80.5
Msa1221560 MtrunA17_Chr8g0383861 30.573 157 104 2 35 191 35 186 4.86e-17 80.5
Msa1221560 MtrunA17_Chr1g0184171 28.788 132 89 1 64 190 44 175 6.82e-17 82.0
Msa1221560 MtrunA17_Chr6g0451051 45.455 88 45 2 141 227 62 147 1.54e-16 77.0
Msa1221560 MtrunA17_Chr6g0451031 44.615 65 34 1 124 188 50 112 1.77e-16 75.9
Msa1221560 MtrunA17_Chr8g0383901 31.977 172 98 4 20 191 25 177 2.76e-16 77.8
Msa1221560 MtrunA17_Chr7g0274711 39.091 110 59 3 118 225 67 170 3.03e-16 77.0
Msa1221560 MtrunA17_Chr1g0186661 43.590 78 39 1 118 190 99 176 3.63e-16 80.1
Msa1221560 MtrunA17_Chr5g0407431 33.094 139 79 6 63 200 34 159 3.85e-16 77.4
Msa1221560 MtrunA17_Chr1g0184631 39.091 110 59 3 118 225 68 171 4.22e-16 76.6
Msa1221560 MtrunA17_Chr8g0347461 44.330 97 46 2 121 215 114 204 4.56e-16 78.6
Msa1221560 MtrunA17_Chr8g0383921 29.730 148 98 1 44 191 43 184 8.57e-16 76.3
Msa1221560 MtrunA17_Chr8g0383871 30.921 152 99 2 40 191 40 185 9.48e-16 76.6
Msa1221560 MtrunA17_Chr3g0143301 54.098 61 26 1 142 202 68 126 1.04e-15 73.9
Msa1221560 MtrunA17_Chr1g0167811 26.627 169 95 6 28 187 17 165 1.44e-15 77.8
Msa1221560 MtrunA17_Chr4g0027761 43.243 74 38 1 118 191 100 169 1.72e-15 75.1
Msa1221560 MtrunA17_Chr2g0297011 44.444 72 39 1 116 187 74 144 1.94e-15 73.9
Msa1221560 MtrunA17_Chr4g0052671 62.791 43 16 0 145 187 106 148 1.95e-15 73.9
Msa1221560 MtrunA17_Chr5g0430781 33.333 117 69 4 81 193 47 158 3.97e-15 74.7
Msa1221560 MtrunA17_Chr8g0370171 44.444 72 39 1 118 188 70 141 4.09e-15 74.3
Msa1221560 MtrunA17_Chr7g0246761 33.333 90 60 0 109 198 54 143 4.89e-15 73.6
Msa1221560 MtrunA17_Chr3g0129671 41.250 80 47 0 116 195 107 186 6.24e-15 74.3
Msa1221560 MtrunA17_Chr5g0409201 31.818 132 78 2 62 189 14 137 6.49e-15 72.4
Msa1221560 MtrunA17_Chr8g0366521 44.737 76 39 1 118 190 76 151 7.45e-15 75.5
Msa1221560 MtrunA17_Chr2g0327791 37.226 137 71 7 101 230 91 219 8.39e-15 73.6
Msa1221560 MtrunA17_Chr5g0444161 46.479 71 37 1 118 187 157 227 9.31e-15 73.9
Msa1221560 MtrunA17_Chr8g0383931 51.562 64 31 0 128 191 124 187 9.96e-15 73.6
Msa1221560 MtrunA17_Chr8g0383941 28.846 156 100 2 36 191 36 180 1.27e-14 73.2
Msa1221560 MtrunA17_Chr3g0118091 39.437 71 43 0 119 189 41 111 1.51e-14 70.5
Msa1221560 MtrunA17_Chr7g0274721 46.479 71 36 1 118 188 68 136 2.13e-14 71.2
Msa1221560 MtrunA17_Chr1g0198201 42.466 73 42 0 118 190 61 133 2.58e-14 72.4
Msa1221560 MtrunA17_Chr5g0437361 40.541 74 43 1 118 190 75 148 2.80e-14 70.9
Msa1221560 MtrunA17_Chr1g0157091 44.156 77 35 3 116 190 46 116 3.27e-14 69.7
Msa1221560 MtrunA17_Chr5g0397351 54.167 48 21 1 145 191 81 128 4.70e-14 69.3
Msa1221560 MtrunA17_Chr8g0387291 29.078 141 68 4 65 193 15 135 5.22e-14 70.1
Msa1221560 MtrunA17_Chr3g0144241 41.176 85 47 2 116 200 77 158 5.40e-14 70.9
Msa1221560 MtrunA17_Chr1g0177041 39.241 79 40 2 116 189 72 147 6.43e-14 69.7
Msa1221560 MtrunA17_Chr5g0444141 50.000 52 26 0 145 196 220 271 7.99e-14 72.0
Msa1221560 MtrunA17_Chr3g0113811 27.273 154 98 4 44 190 5 151 8.83e-14 69.7
Msa1221560 MtrunA17_Chr8g0369571 60.000 45 18 0 145 189 90 134 2.93e-13 68.2
Msa1221560 MtrunA17_Chr7g0261091 42.105 76 41 1 118 190 70 145 3.00e-13 70.9
Msa1221560 MtrunA17_Chr7g0274731 45.070 71 37 1 118 188 89 157 3.48e-13 68.6
Msa1221560 MtrunA17_Chr5g0409211 59.091 44 18 0 145 188 94 137 3.88e-13 67.8
Msa1221560 MtrunA17_Chr7g0269491 45.205 73 35 2 119 188 67 137 6.15e-13 67.8
Msa1221560 MtrunA17_Chr8g0350741 30.000 100 69 1 115 214 59 157 1.64e-12 65.9
Msa1221560 MtrunA17_Chr3g0124531 54.902 51 21 2 144 193 68 117 1.74e-12 65.5
Msa1221560 MtrunA17_Chr8g0343571 43.548 62 34 1 130 190 69 130 2.29e-12 65.5
Msa1221560 MtrunA17_Chr3g0120011 44.928 69 36 1 123 191 99 165 2.53e-12 66.2
Msa1221560 MtrunA17_Chr8g0348151 38.571 70 40 1 118 187 90 156 2.55e-12 66.2
Msa1221560 MtrunA17_Chr7g0248831 34.667 75 42 2 117 187 79 150 3.26e-12 65.1
Msa1221560 MtrunA17_Chr5g0406031 54.348 46 21 0 145 190 189 234 4.56e-12 65.9
Msa1221560 MtrunA17_Chr6g0451041 55.102 49 21 1 141 188 13 61 4.57e-12 62.4
Msa1221560 MtrunA17_Chr3g0117821 54.167 48 22 0 141 188 81 128 5.33e-12 63.9
Msa1221560 MtrunA17_Chr2g0300331 44.000 75 36 2 143 214 167 238 5.54e-12 65.9
Msa1221560 MtrunA17_Chr3g0118101 38.889 72 44 0 118 189 87 158 8.49e-12 63.9
Msa1221560 MtrunA17_Chr8g0388231 42.667 75 34 2 118 187 309 379 8.70e-12 67.0
Msa1221560 MtrunA17_Chr4g0065171 38.356 73 41 3 121 190 458 529 9.72e-12 67.4
Msa1221560 MtrunA17_Chr8g0388201 53.488 43 20 0 145 187 347 389 1.06e-11 66.6
Msa1221560 MtrunA17_Chr7g0248841 35.065 77 47 2 118 191 74 150 1.78e-11 62.8
Msa1221560 MtrunA17_Chr0c01g0489441 46.000 50 23 2 144 190 73 121 2.22e-11 62.0
Msa1221560 MtrunA17_Chr1g0197011 32.278 158 80 6 44 191 13 153 2.26e-11 62.0
Msa1221560 MtrunA17_Chr1g0212451 49.091 55 27 1 145 198 80 134 4.02e-11 60.8
Msa1221560 MtrunA17_Chr4g0069761 49.091 55 21 1 145 192 21 75 4.59e-11 59.7
Msa1221560 MtrunA17_Chr8g0345401 42.593 54 30 1 145 197 49 102 4.67e-11 60.8
Msa1221560 MtrunA17_Chr4g0060981 32.632 95 53 2 96 190 136 219 6.49e-11 62.4
Msa1221560 MtrunA17_Chr8g0371291 51.064 47 23 0 141 187 176 222 6.76e-11 62.4
Msa1221560 MtrunA17_Chr5g0425981 47.917 48 23 2 144 190 56 102 7.34e-11 60.1
Msa1221560 MtrunA17_Chr3g0081611 34.066 91 51 2 118 203 80 166 8.16e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221560 AT4G30400.1 48.322 447 155 17 90 512 78 472 2.23e-108 331
Msa1221560 AT2G18650.1 45.228 482 156 16 48 509 28 421 9.16e-104 317
Msa1221560 AT5G40250.1 40.470 383 123 15 58 412 40 345 7.18e-65 215
Msa1221560 AT5G57750.1 58.282 163 63 2 59 216 32 194 3.74e-55 184
Msa1221560 AT1G23980.1 60.417 144 46 3 58 191 48 190 4.94e-52 181
Msa1221560 AT3G48030.2 51.128 133 60 1 63 190 42 174 7.03e-36 135
Msa1221560 AT3G48030.1 51.128 133 60 1 63 190 120 252 1.35e-35 136
Msa1221560 AT1G72200.1 39.416 137 76 3 58 191 58 190 3.46e-25 107
Msa1221560 AT4G40070.1 33.333 168 102 3 27 190 8 169 8.39e-25 105
Msa1221560 AT2G35000.1 37.405 131 80 1 63 191 51 181 2.94e-24 104
Msa1221560 AT3G05200.1 37.162 148 80 5 46 190 36 173 9.03e-24 103
Msa1221560 AT2G20030.1 35.484 186 109 6 61 238 39 221 1.87e-23 102
Msa1221560 AT1G22500.1 39.259 135 73 3 60 191 36 164 4.07e-23 101
Msa1221560 AT2G34990.1 35.714 140 78 3 57 190 8 141 1.65e-22 98.2
Msa1221560 AT2G34990.2 35.714 140 78 3 57 190 30 163 1.68e-22 99.0
Msa1221560 AT4G09110.1 34.437 151 77 4 43 190 37 168 2.54e-22 97.8
Msa1221560 AT5G05810.1 58.333 72 29 1 116 187 118 188 2.71e-22 99.4
Msa1221560 AT1G72220.1 38.571 140 71 5 64 190 85 222 4.66e-22 99.0
Msa1221560 AT4G09130.1 53.333 75 33 1 118 190 91 165 7.55e-22 97.4
Msa1221560 AT4G17905.1 33.728 169 94 4 34 191 40 201 1.36e-21 95.9
Msa1221560 AT5G17600.1 59.155 71 28 1 118 188 116 185 1.87e-21 96.3
Msa1221560 AT1G35330.1 54.667 75 32 1 118 190 100 174 4.15e-21 94.7
Msa1221560 AT4G09120.1 52.000 75 34 1 118 190 94 168 5.32e-21 94.7
Msa1221560 AT4G17905.2 33.728 169 94 4 34 191 66 227 5.59e-21 94.7
Msa1221560 AT3G03550.1 34.228 149 79 3 61 191 58 205 6.77e-21 94.7
Msa1221560 AT5G10380.1 37.956 137 67 4 108 243 99 218 1.43e-20 92.8
Msa1221560 AT3G60220.1 44.545 110 49 2 122 219 92 201 1.65e-20 93.2
Msa1221560 AT2G47560.1 47.674 86 44 1 116 200 78 163 3.22e-20 90.1
Msa1221560 AT2G42360.1 32.000 150 95 2 42 190 10 153 4.34e-20 89.7
Msa1221560 AT3G18930.2 48.485 99 42 2 118 207 120 218 4.87e-20 92.8
Msa1221560 AT3G18930.3 48.485 99 42 2 118 207 120 218 4.87e-20 92.8
Msa1221560 AT3G18930.1 48.485 99 42 2 118 207 120 218 4.87e-20 92.8
Msa1221560 AT4G33565.1 50.617 81 39 1 111 191 184 263 6.82e-20 91.7
Msa1221560 AT4G10160.1 38.095 126 71 3 68 191 23 143 1.14e-19 88.2
Msa1221560 AT4G28890.1 53.521 71 32 1 117 187 96 165 2.56e-19 90.9
Msa1221560 AT5G27420.1 49.333 75 36 1 118 190 95 169 5.25e-19 89.4
Msa1221560 AT5G46650.1 29.902 204 122 8 45 236 8 202 1.04e-18 87.0
Msa1221560 AT4G17920.1 30.102 196 116 7 59 238 19 209 1.66e-18 86.3
Msa1221560 AT3G10910.1 35.338 133 79 4 62 191 32 160 2.92e-18 83.2
Msa1221560 AT3G16720.1 34.416 154 85 5 46 188 14 162 2.96e-18 85.9
Msa1221560 AT4G10150.1 46.053 76 39 1 116 191 84 157 7.33e-18 83.6
Msa1221560 AT4G09100.1 42.105 76 42 1 118 191 56 131 9.54e-18 80.1
Msa1221560 AT1G04360.1 30.337 178 107 6 64 232 46 215 2.97e-17 84.0
Msa1221560 AT3G62690.1 33.117 154 81 5 44 188 16 156 3.62e-17 82.0
Msa1221560 AT1G53820.1 40.952 105 57 3 114 215 91 193 3.96e-17 82.8
Msa1221560 AT4G15975.1 33.113 151 97 3 118 268 51 197 4.11e-17 81.3
Msa1221560 AT5G01880.1 45.333 75 40 1 117 191 78 151 4.17e-17 79.3
Msa1221560 AT5G05280.1 29.560 159 100 4 34 191 12 159 1.09e-16 78.6
Msa1221560 AT2G42350.1 46.575 73 33 2 118 188 75 143 5.02e-16 77.8
Msa1221560 AT5G58580.1 46.053 76 41 0 116 191 109 184 5.18e-16 79.3
Msa1221560 AT5G43420.1 38.462 91 43 1 113 190 93 183 6.49e-16 80.1
Msa1221560 AT5G47610.1 29.114 158 90 3 34 191 18 153 6.74e-16 75.9
Msa1221560 AT1G49230.1 30.822 146 85 2 47 192 49 178 9.06e-16 77.0
Msa1221560 AT2G27940.1 43.243 74 40 1 118 191 115 186 1.07e-15 77.0
Msa1221560 AT1G72310.1 33.540 161 70 5 114 253 98 242 1.14e-15 78.6
Msa1221560 AT1G33480.1 42.105 76 42 1 116 191 73 146 1.83e-15 77.0
Msa1221560 AT1G76410.1 33.588 131 76 3 63 191 29 150 8.26e-15 73.2
Msa1221560 AT5G07040.1 30.952 126 80 3 63 187 17 136 1.33e-14 72.0
Msa1221560 AT1G20823.1 30.719 153 101 4 41 191 8 157 2.90e-14 72.0
Msa1221560 AT2G35420.1 44.000 75 41 1 116 190 75 148 5.57e-14 72.4
Msa1221560 AT3G18773.1 42.105 76 44 0 116 191 101 176 5.80e-14 71.6
Msa1221560 AT4G38140.1 48.529 68 30 2 145 207 62 129 5.89e-14 69.7
Msa1221560 AT1G49220.1 29.630 135 86 2 59 191 54 181 1.91e-13 70.9
Msa1221560 AT1G49210.1 31.847 157 83 5 52 191 32 181 2.33e-13 70.1
Msa1221560 AT3G11110.1 29.655 145 88 3 46 190 22 152 2.90e-13 68.2
Msa1221560 AT3G61550.1 37.500 80 40 1 118 187 99 178 3.39e-13 69.3
Msa1221560 AT3G60966.1 59.184 49 19 1 142 190 60 107 4.72e-13 67.0
Msa1221560 AT2G17450.1 47.368 57 29 1 144 200 101 156 6.31e-13 67.8
Msa1221560 AT4G35480.1 49.123 57 28 1 144 200 112 167 7.85e-13 67.8
Msa1221560 AT3G14320.1 56.250 48 21 0 143 190 86 133 8.45e-13 67.8
Msa1221560 AT2G35910.1 41.892 74 42 1 118 191 121 193 8.76e-13 68.2
Msa1221560 AT2G46493.1 31.496 127 78 4 63 187 61 180 9.33e-13 67.4
Msa1221560 AT1G49200.1 28.148 135 88 2 59 191 55 182 1.04e-12 68.2
Msa1221560 AT5G42200.1 53.191 47 22 0 144 190 103 149 1.37e-12 66.2
Msa1221560 AT4G17245.1 29.747 158 91 4 35 191 11 149 1.50e-12 66.2
Msa1221560 AT3G43430.1 49.153 59 21 1 145 194 83 141 2.92e-12 65.5
Msa1221560 AT2G44578.1 50.000 46 23 0 145 190 70 115 3.97e-12 64.3
Msa1221560 AT2G18670.1 41.096 73 43 0 118 190 83 155 7.92e-12 64.7
Msa1221560 AT2G46494.1 30.827 133 75 6 62 187 236 358 7.97e-12 67.4
Msa1221560 AT5G53110.1 39.080 87 40 3 110 187 290 372 8.49e-12 67.4
Msa1221560 AT2G46160.1 31.183 93 57 1 118 203 104 196 9.20e-12 65.1
Msa1221560 AT2G46160.2 31.183 93 57 1 118 203 104 196 9.20e-12 65.1
Msa1221560 AT1G32361.1 39.474 76 41 2 116 190 128 199 1.12e-11 66.6
Msa1221560 AT3G20395.1 37.805 82 48 1 112 193 141 219 1.27e-11 64.7
Msa1221560 AT4G24015.1 54.348 46 21 0 145 190 105 150 1.46e-11 63.5
Msa1221560 AT3G19140.1 41.558 77 35 2 118 190 54 124 1.77e-11 62.4
Msa1221560 AT2G25410.1 53.333 45 21 0 145 189 327 371 2.20e-11 65.9
Msa1221560 AT2G17730.1 48.000 50 26 0 141 190 192 241 2.51e-11 64.3
Msa1221560 AT5G45290.1 42.466 73 37 4 123 193 470 539 2.70e-11 66.2
Msa1221560 AT2G37580.1 51.064 47 23 0 144 190 141 187 3.76e-11 63.5
Msa1221560 AT3G61460.1 40.845 71 40 2 125 193 73 143 4.54e-11 62.0
Msa1221560 AT5G66070.5 52.174 46 22 0 145 190 176 221 4.86e-11 63.2
Msa1221560 AT5G66070.1 52.174 46 22 0 145 190 176 221 4.86e-11 63.2
Msa1221560 AT2G28920.1 47.727 44 23 0 145 188 93 136 4.88e-11 61.2
Msa1221560 AT4G35840.1 48.000 50 26 0 141 190 187 236 5.19e-11 63.2
Msa1221560 AT5G06490.1 46.809 47 25 0 145 191 129 175 6.47e-11 62.4
Msa1221560 AT1G28040.1 38.961 77 36 3 117 187 224 295 7.38e-11 63.9
Msa1221560 AT5G66070.2 52.174 46 22 0 145 190 200 245 8.10e-11 62.8
Msa1221560 AT4G11370.1 31.008 129 75 4 66 191 17 134 9.30e-11 60.8

Find 103 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTGCAGCCTCTCTTTC+TGG 0.103627 8_1:-85192303 None:intergenic
GGGATCATTTGCTTATATTA+TGG 0.181838 8_1:+85192572 Msa1221560:CDS
TGCAAATTTGAAATCTCTTC+TGG 0.188680 8_1:-85192721 None:intergenic
TTTCTTTACAAAACTATTAT+AGG 0.195927 8_1:+85192036 Msa1221560:CDS
AATACTTGGACTAACCTTTA+AGG 0.197221 8_1:-85191815 None:intergenic
CTAGAAGGGCTGTTTCATTT+AGG 0.245294 8_1:+85192895 Msa1221560:CDS
TGAAAAGCATGGCTACATTT+TGG 0.247041 8_1:-85192132 None:intergenic
ATCTCTTAGTTAGATTTCTA+TGG 0.247046 8_1:+85191890 Msa1221560:CDS
GCTCACTGGAAAACAAAATA+AGG 0.259907 8_1:+85193133 Msa1221560:CDS
ACTGTTTCTGAGATGGATTT+TGG 0.276313 8_1:+85192993 Msa1221560:CDS
TTGGTTCTTGTTCTAGAATC+TGG 0.285012 8_1:+85192255 Msa1221560:CDS
TCTCCTCCAACTTCAACTTT+TGG 0.285506 8_1:-85192441 None:intergenic
CGGTGAATTCGGAGGTGATT+TGG 0.309461 8_1:+85192395 Msa1221560:CDS
AGAGCTGAGGATGTTGTTAA+AGG 0.342857 8_1:+85192759 Msa1221560:CDS
AAATCAAAGCTGCTATAGTA+TGG 0.346299 8_1:+85193064 Msa1221560:CDS
CTTCCAACATTGCTTTGTAA+TGG 0.356096 8_1:-85192921 None:intergenic
TAATACGGTGGTTGTTCTAA+TGG 0.359144 8_1:-85191703 None:intergenic
TTGCTAGAAGGACTTTGCTT+TGG 0.374613 8_1:+85193111 Msa1221560:CDS
GGATGAAACTTCATCATTGC+AGG 0.378097 8_1:+85192593 Msa1221560:CDS
AGGACAGCAAATTCTCATCT+TGG 0.380152 8_1:+85192360 Msa1221560:CDS
ATATCAAAGATTTGGCTTAG+AGG 0.383746 8_1:+85192834 Msa1221560:CDS
GAGTAGAGACCCTGATGAAT+TGG 0.388468 8_1:+85191921 Msa1221560:CDS
AAACAATTGTGGTTCTCCTT+TGG 0.389738 8_1:+85192236 Msa1221560:CDS
ACTAGTGAGGGTGCTGGTAT+TGG 0.396180 8_1:+85192786 Msa1221560:CDS
ATGTAGCTGATTCATCTAGA+AGG 0.400929 8_1:+85192880 Msa1221560:CDS
GAGCACCTTCATTTGCTAGA+AGG 0.402960 8_1:+85193099 Msa1221560:CDS
TGTTGCGGAGACGGTGAATT+CGG 0.408642 8_1:+85192384 Msa1221560:CDS
AGGACTTTGCTTTGGCTCAC+TGG 0.408702 8_1:+85193119 Msa1221560:CDS
AATTGTTTGTGTTGAAATCA+TGG 0.410664 8_1:-85192221 None:intergenic
GTAACATCATCCAATTCATC+AGG 0.411733 8_1:-85191931 None:intergenic
CATCTTGGTTGTTGCGGAGA+CGG 0.419097 8_1:+85192375 Msa1221560:CDS
AAAGTTGTTACTGTTAAGCT+TGG 0.427283 8_1:+85192474 Msa1221560:CDS
TTGGTAGGACTAGTTCAGTT+AGG 0.433669 8_1:+85192340 Msa1221560:CDS
AAACAAACAGCACAGTCAAA+AGG 0.440166 8_1:-85192072 None:intergenic
GATGATGTTACTGCTCTTCA+AGG 0.452244 8_1:+85191943 Msa1221560:CDS
ATTCGGAGGTGATTTGGCTT+CGG 0.456317 8_1:+85192401 Msa1221560:CDS
AATGTTGATGGTGGAGGGGA+AGG 0.458055 8_1:+85192507 Msa1221560:CDS
TATCAAAGATTTGGCTTAGA+GGG 0.462286 8_1:+85192835 Msa1221560:CDS
ATTTCTACAGGTAGTGTTGT+TGG 0.464261 8_1:+85192321 Msa1221560:CDS
TGCCTTTGATTCCAGGTCAT+AGG 0.470953 8_1:+85192670 Msa1221560:CDS
ATAGGTGGAAATGGTGGGTG+TGG 0.475114 8_1:-85191733 None:intergenic
AATCTGGTAGTGATACTTCA+AGG 0.475232 8_1:+85192271 Msa1221560:CDS
TTGAGCATGAAGATAAGCTT+AGG 0.477020 8_1:+85192103 Msa1221560:CDS
AAGGTGTTGTCACCTTGAAA+TGG 0.482527 8_1:-85191667 None:intergenic
CATGATCCAAAAGTTGAAGT+TGG 0.484075 8_1:+85192435 Msa1221560:CDS
AGAGAGGCTGCAATTTCTAC+AGG 0.484648 8_1:+85192309 Msa1221560:CDS
GGAAAGTATAGGAATGTTGA+TGG 0.485485 8_1:+85192495 Msa1221560:CDS
ATATGGAGTGTATTGATACA+TGG 0.487467 8_1:+85192154 Msa1221560:CDS
GTAATGATTATAAGAATACT+TGG 0.488040 8_1:-85191829 None:intergenic
GATGATTTGAAGGGTAAGAA+TGG 0.489628 8_1:+85192951 Msa1221560:CDS
CTTAGAGTAGAAACTGTGAT+AGG 0.491479 8_1:-85191751 None:intergenic
TAATGGTGATGGAGTCATAA+AGG 0.492304 8_1:-85191686 None:intergenic
ATCCTATGACCTGGAATCAA+AGG 0.501462 8_1:-85192672 None:intergenic
GGAGGAGGAAGTGAATTTAG+TGG 0.503075 8_1:+85193029 Msa1221560:CDS
AACAAACAGCACAGTCAAAA+GGG 0.510919 8_1:-85192071 None:intergenic
TATAGGAATGTTGATGGTGG+AGG 0.513287 8_1:+85192501 Msa1221560:CDS
AAAGTTGAAGTTGGAGGAGA+TGG 0.513670 8_1:+85192444 Msa1221560:CDS
GAAACTGTGATAGGTGGAAA+TGG 0.514717 8_1:-85191742 None:intergenic
TTTCCATTACAAAGCAATGT+TGG 0.516937 8_1:+85192918 Msa1221560:CDS
CTGTTAAGCTTGGAAAGTAT+AGG 0.520231 8_1:+85192484 Msa1221560:CDS
AAGGAGTACTGTTTCTGAGA+TGG 0.523720 8_1:+85192986 Msa1221560:CDS
ATAGGAATGTTGATGGTGGA+GGG 0.526338 8_1:+85192502 Msa1221560:CDS
CTACAGGTAGTGTTGTTGGT+AGG 0.528740 8_1:+85192325 Msa1221560:CDS
GAAGTGTATCAATGAATGAT+TGG 0.536495 8_1:-85192008 None:intergenic
AATTCTCATCTTGGTTGTTG+CGG 0.540191 8_1:+85192369 Msa1221560:CDS
TTACAAAGCAATGTTGGAAG+TGG 0.540697 8_1:+85192924 Msa1221560:CDS
AAGTGGTAATGATGATTTGA+AGG 0.545819 8_1:+85192941 Msa1221560:CDS
GGAAAATGGGAAAATGGAGG+AGG 0.556603 8_1:+85193014 Msa1221560:CDS
GGGTGTGGTTGAAAATAATA+CGG 0.556817 8_1:-85191718 None:intergenic
GATTTCAACACAAACAATTG+TGG 0.567714 8_1:+85192225 Msa1221560:CDS
AAAGTCCTTCTAGCAAATGA+AGG 0.572310 8_1:-85193104 None:intergenic
ATCTGGTAGTGATACTTCAA+GGG 0.572557 8_1:+85192272 Msa1221560:CDS
ACTGTGATAGGTGGAAATGG+TGG 0.574890 8_1:-85191739 None:intergenic
TGTTAAAGGTAGTACTAGTG+AGG 0.576153 8_1:+85192773 Msa1221560:CDS
GGTAGTACTAGTGAGGGTGC+TGG 0.577473 8_1:+85192780 Msa1221560:CDS
TGGTATTGGAAGGAGTAGAA+AGG 0.578792 8_1:+85192800 Msa1221560:CDS
GACATTGCAATCCTATGACC+TGG 0.582245 8_1:-85192681 None:intergenic
TGAAGTTGGAGGAGATGGTG+TGG 0.582393 8_1:+85192449 Msa1221560:CDS
TAGAAAGATAAAGAACTAGA+GGG 0.583177 8_1:-85193180 None:intergenic
GATCCAAAAGTTGAAGTTGG+AGG 0.598740 8_1:+85192438 Msa1221560:CDS
ATGATGTTACTGCTCTTCAA+GGG 0.601634 8_1:+85191944 Msa1221560:CDS
GGAAATTGTTCCAGAAAGAG+AGG 0.602109 8_1:+85192293 Msa1221560:CDS
GTGAGGGTGCTGGTATTGGA+AGG 0.605742 8_1:+85192790 Msa1221560:CDS
AGAATGGCATGTTTCATACA+AGG 0.605826 8_1:+85192967 Msa1221560:CDS
TGTAGCTGATTCATCTAGAA+GGG 0.607017 8_1:+85192881 Msa1221560:CDS
GGTGGTTGTTCTAATGGTGA+TGG 0.608551 8_1:-85191697 None:intergenic
TACACTCCATATGAAAAGCA+TGG 0.609642 8_1:-85192143 None:intergenic
AAGTATAGGAATGTTGATGG+TGG 0.610465 8_1:+85192498 Msa1221560:CDS
CTGTGATAGGTGGAAATGGT+GGG 0.612490 8_1:-85191738 None:intergenic
TAGGAATGTTGATGGTGGAG+GGG 0.620042 8_1:+85192503 Msa1221560:CDS
TTTGGAAAATGGGAAAATGG+AGG 0.622030 8_1:+85193011 Msa1221560:CDS
GATTCTAGAACAAGAACCAA+AGG 0.623011 8_1:-85192252 None:intergenic
AGAGTAGAAACTGTGATAGG+TGG 0.624253 8_1:-85191748 None:intergenic
TGCGGAGACGGTGAATTCGG+AGG 0.635627 8_1:+85192387 Msa1221560:CDS
GCAACAATGTGGATAACAGA+AGG 0.641238 8_1:+85192538 Msa1221560:CDS
CTTTGATTCAGCTAGAGCTG+AGG 0.641873 8_1:+85192746 Msa1221560:CDS
GTTAAAGGTAGTACTAGTGA+GGG 0.651923 8_1:+85192774 Msa1221560:CDS
AGCAAATTAGCTCTACAAAG+AGG 0.655219 8_1:-85192198 None:intergenic
AGGAAGTAGCAGCAACAATG+TGG 0.665618 8_1:+85192527 Msa1221560:CDS
TCATCAGGGTCTCTACTCTG+AGG 0.680638 8_1:-85191916 None:intergenic
TAACATCATCCAATTCATCA+GGG 0.684148 8_1:-85191930 None:intergenic
AGTGGTAATGATGATTTGAA+GGG 0.684415 8_1:+85192942 Msa1221560:CDS
TGTGGTTGAAAATAATACGG+TGG 0.746193 8_1:-85191715 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTTACAAAACTATTAT+AGG + chr8_1:85192036-85192055 Msa1221560:CDS 15.0%
!! TTTCTTTACAAAACTATTAT+AGG + chr8_1:85192036-85192055 Msa1221560:CDS 15.0%
!!! TTTTAACAATAACACCTTAA+AGG + chr8_1:85191801-85191820 Msa1221560:CDS 20.0%
!! GTAATGATTATAAGAATACT+TGG - chr8_1:85191832-85191851 None:intergenic 20.0%
!!! GTTTTTCTATATCAAAGATT+TGG + chr8_1:85192826-85192845 Msa1221560:CDS 20.0%
!!! TTTTAACAATAACACCTTAA+AGG + chr8_1:85191801-85191820 Msa1221560:CDS 20.0%
!! GTAATGATTATAAGAATACT+TGG - chr8_1:85191832-85191851 None:intergenic 20.0%
!!! GTTTTTCTATATCAAAGATT+TGG + chr8_1:85192826-85192845 Msa1221560:CDS 20.0%
! ATCTCTTAGTTAGATTTCTA+TGG + chr8_1:85191890-85191909 Msa1221560:CDS 25.0%
!!! ATAGTTTTGTAAAGAAACAC+TGG - chr8_1:85192033-85192052 None:intergenic 25.0%
! AATTGTTTGTGTTGAAATCA+TGG - chr8_1:85192224-85192243 None:intergenic 25.0%
!!! TGTTTTATTGGAGTTCTAAT+TGG - chr8_1:85192621-85192640 None:intergenic 25.0%
!!! TTACTCAATTGCTGTTTTAT+TGG - chr8_1:85192633-85192652 None:intergenic 25.0%
! GGGAAAAAAGATAAGAAAAA+TGG + chr8_1:85192855-85192874 Msa1221560:CDS 25.0%
! ATCTCTTAGTTAGATTTCTA+TGG + chr8_1:85191890-85191909 Msa1221560:CDS 25.0%
!!! ATAGTTTTGTAAAGAAACAC+TGG - chr8_1:85192033-85192052 None:intergenic 25.0%
! AATTGTTTGTGTTGAAATCA+TGG - chr8_1:85192224-85192243 None:intergenic 25.0%
!!! TGTTTTATTGGAGTTCTAAT+TGG - chr8_1:85192621-85192640 None:intergenic 25.0%
!!! TTACTCAATTGCTGTTTTAT+TGG - chr8_1:85192633-85192652 None:intergenic 25.0%
! GGGAAAAAAGATAAGAAAAA+TGG + chr8_1:85192855-85192874 Msa1221560:CDS 25.0%
AATACTTGGACTAACCTTTA+AGG - chr8_1:85191818-85191837 None:intergenic 30.0%
TAACATCATCCAATTCATCA+GGG - chr8_1:85191933-85191952 None:intergenic 30.0%
GAAGTGTATCAATGAATGAT+TGG - chr8_1:85192011-85192030 None:intergenic 30.0%
! ATATGGAGTGTATTGATACA+TGG + chr8_1:85192154-85192173 Msa1221560:CDS 30.0%
GATTTCAACACAAACAATTG+TGG + chr8_1:85192225-85192244 Msa1221560:CDS 30.0%
AAAGTTGTTACTGTTAAGCT+TGG + chr8_1:85192474-85192493 Msa1221560:CDS 30.0%
!!! TAACAGAAGGTGTTTTTCAA+TGG + chr8_1:85192551-85192570 Msa1221560:CDS 30.0%
!!! AACAGAAGGTGTTTTTCAAT+GGG + chr8_1:85192552-85192571 Msa1221560:CDS 30.0%
GGGATCATTTGCTTATATTA+TGG + chr8_1:85192572-85192591 Msa1221560:CDS 30.0%
! TGCAAATTTGAAATCTCTTC+TGG - chr8_1:85192724-85192743 None:intergenic 30.0%
! ATATCAAAGATTTGGCTTAG+AGG + chr8_1:85192834-85192853 Msa1221560:CDS 30.0%
! TATCAAAGATTTGGCTTAGA+GGG + chr8_1:85192835-85192854 Msa1221560:CDS 30.0%
TTTCCATTACAAAGCAATGT+TGG + chr8_1:85192918-85192937 Msa1221560:CDS 30.0%
! AAGTGGTAATGATGATTTGA+AGG + chr8_1:85192941-85192960 Msa1221560:CDS 30.0%
! AGTGGTAATGATGATTTGAA+GGG + chr8_1:85192942-85192961 Msa1221560:CDS 30.0%
!! TGAGATGGATTTTGGAAAAT+GGG + chr8_1:85193001-85193020 Msa1221560:CDS 30.0%
!! GATTTTGGAAAATGGGAAAA+TGG + chr8_1:85193008-85193027 Msa1221560:CDS 30.0%
AAATCAAAGCTGCTATAGTA+TGG + chr8_1:85193064-85193083 Msa1221560:CDS 30.0%
AATACTTGGACTAACCTTTA+AGG - chr8_1:85191818-85191837 None:intergenic 30.0%
TAACATCATCCAATTCATCA+GGG - chr8_1:85191933-85191952 None:intergenic 30.0%
GAAGTGTATCAATGAATGAT+TGG - chr8_1:85192011-85192030 None:intergenic 30.0%
! ATATGGAGTGTATTGATACA+TGG + chr8_1:85192154-85192173 Msa1221560:CDS 30.0%
GATTTCAACACAAACAATTG+TGG + chr8_1:85192225-85192244 Msa1221560:CDS 30.0%
AAAGTTGTTACTGTTAAGCT+TGG + chr8_1:85192474-85192493 Msa1221560:CDS 30.0%
!!! TAACAGAAGGTGTTTTTCAA+TGG + chr8_1:85192551-85192570 Msa1221560:CDS 30.0%
!!! AACAGAAGGTGTTTTTCAAT+GGG + chr8_1:85192552-85192571 Msa1221560:CDS 30.0%
GGGATCATTTGCTTATATTA+TGG + chr8_1:85192572-85192591 Msa1221560:CDS 30.0%
! TGCAAATTTGAAATCTCTTC+TGG - chr8_1:85192724-85192743 None:intergenic 30.0%
! ATATCAAAGATTTGGCTTAG+AGG + chr8_1:85192834-85192853 Msa1221560:CDS 30.0%
! TATCAAAGATTTGGCTTAGA+GGG + chr8_1:85192835-85192854 Msa1221560:CDS 30.0%
TTTCCATTACAAAGCAATGT+TGG + chr8_1:85192918-85192937 Msa1221560:CDS 30.0%
! AAGTGGTAATGATGATTTGA+AGG + chr8_1:85192941-85192960 Msa1221560:CDS 30.0%
! AGTGGTAATGATGATTTGAA+GGG + chr8_1:85192942-85192961 Msa1221560:CDS 30.0%
!! TGAGATGGATTTTGGAAAAT+GGG + chr8_1:85193001-85193020 Msa1221560:CDS 30.0%
!! GATTTTGGAAAATGGGAAAA+TGG + chr8_1:85193008-85193027 Msa1221560:CDS 30.0%
AAATCAAAGCTGCTATAGTA+TGG + chr8_1:85193064-85193083 Msa1221560:CDS 30.0%
!!! AGAAGTTTTGTGCCATTTCA+AGG + chr8_1:85191655-85191674 Msa1221560:CDS 35.0%
!! TAATGGTGATGGAGTCATAA+AGG - chr8_1:85191689-85191708 None:intergenic 35.0%
TAATACGGTGGTTGTTCTAA+TGG - chr8_1:85191706-85191725 None:intergenic 35.0%
TGTGGTTGAAAATAATACGG+TGG - chr8_1:85191718-85191737 None:intergenic 35.0%
GGGTGTGGTTGAAAATAATA+CGG - chr8_1:85191721-85191740 None:intergenic 35.0%
CTTAGAGTAGAAACTGTGAT+AGG - chr8_1:85191754-85191773 None:intergenic 35.0%
!!! GCTGTTGTTTTCTTCATTTC+TGG + chr8_1:85191859-85191878 Msa1221560:CDS 35.0%
GTAACATCATCCAATTCATC+AGG - chr8_1:85191934-85191953 None:intergenic 35.0%
ATGATGTTACTGCTCTTCAA+GGG + chr8_1:85191944-85191963 Msa1221560:CDS 35.0%
!! CTTTTTCATCTTCATGATGC+TGG + chr8_1:85191979-85191998 Msa1221560:CDS 35.0%
AACAAACAGCACAGTCAAAA+GGG - chr8_1:85192074-85192093 None:intergenic 35.0%
AAACAAACAGCACAGTCAAA+AGG - chr8_1:85192075-85192094 None:intergenic 35.0%
TTGAGCATGAAGATAAGCTT+AGG + chr8_1:85192103-85192122 Msa1221560:CDS 35.0%
!! TGAAAAGCATGGCTACATTT+TGG - chr8_1:85192135-85192154 None:intergenic 35.0%
! ATGTAGCCATGCTTTTCATA+TGG + chr8_1:85192137-85192156 Msa1221560:CDS 35.0%
TACACTCCATATGAAAAGCA+TGG - chr8_1:85192146-85192165 None:intergenic 35.0%
!! AGCAAATTAGCTCTACAAAG+AGG - chr8_1:85192201-85192220 None:intergenic 35.0%
AAACAATTGTGGTTCTCCTT+TGG + chr8_1:85192236-85192255 Msa1221560:CDS 35.0%
!! GATTCTAGAACAAGAACCAA+AGG - chr8_1:85192255-85192274 None:intergenic 35.0%
!! TTGGTTCTTGTTCTAGAATC+TGG + chr8_1:85192255-85192274 Msa1221560:CDS 35.0%
! AATCTGGTAGTGATACTTCA+AGG + chr8_1:85192271-85192290 Msa1221560:CDS 35.0%
! ATCTGGTAGTGATACTTCAA+GGG + chr8_1:85192272-85192291 Msa1221560:CDS 35.0%
ATTTCTACAGGTAGTGTTGT+TGG + chr8_1:85192321-85192340 Msa1221560:CDS 35.0%
AATTCTCATCTTGGTTGTTG+CGG + chr8_1:85192369-85192388 Msa1221560:CDS 35.0%
CATGATCCAAAAGTTGAAGT+TGG + chr8_1:85192435-85192454 Msa1221560:CDS 35.0%
! CTGTTAAGCTTGGAAAGTAT+AGG + chr8_1:85192484-85192503 Msa1221560:CDS 35.0%
! GGAAAGTATAGGAATGTTGA+TGG + chr8_1:85192495-85192514 Msa1221560:CDS 35.0%
! AAGTATAGGAATGTTGATGG+TGG + chr8_1:85192498-85192517 Msa1221560:CDS 35.0%
! AATGTTTTGCCTTTGATTCC+AGG + chr8_1:85192663-85192682 Msa1221560:CDS 35.0%
TGTTAAAGGTAGTACTAGTG+AGG + chr8_1:85192773-85192792 Msa1221560:CDS 35.0%
GTTAAAGGTAGTACTAGTGA+GGG + chr8_1:85192774-85192793 Msa1221560:CDS 35.0%
! ATGTAGCTGATTCATCTAGA+AGG + chr8_1:85192880-85192899 Msa1221560:CDS 35.0%
! TGTAGCTGATTCATCTAGAA+GGG + chr8_1:85192881-85192900 Msa1221560:CDS 35.0%
CTTCCAACATTGCTTTGTAA+TGG - chr8_1:85192924-85192943 None:intergenic 35.0%
TTACAAAGCAATGTTGGAAG+TGG + chr8_1:85192924-85192943 Msa1221560:CDS 35.0%
GATGATTTGAAGGGTAAGAA+TGG + chr8_1:85192951-85192970 Msa1221560:CDS 35.0%
AGAATGGCATGTTTCATACA+AGG + chr8_1:85192967-85192986 Msa1221560:CDS 35.0%
!!! ACTGTTTCTGAGATGGATTT+TGG + chr8_1:85192993-85193012 Msa1221560:CDS 35.0%
!! CTGAGATGGATTTTGGAAAA+TGG + chr8_1:85193000-85193019 Msa1221560:CDS 35.0%
TTTGGAAAATGGGAAAATGG+AGG + chr8_1:85193011-85193030 Msa1221560:CDS 35.0%
AAAGTCCTTCTAGCAAATGA+AGG - chr8_1:85193107-85193126 None:intergenic 35.0%
GCTCACTGGAAAACAAAATA+AGG + chr8_1:85193133-85193152 Msa1221560:CDS 35.0%
!!! AGAAGTTTTGTGCCATTTCA+AGG + chr8_1:85191655-85191674 Msa1221560:CDS 35.0%
!! TAATGGTGATGGAGTCATAA+AGG - chr8_1:85191689-85191708 None:intergenic 35.0%
TAATACGGTGGTTGTTCTAA+TGG - chr8_1:85191706-85191725 None:intergenic 35.0%
TGTGGTTGAAAATAATACGG+TGG - chr8_1:85191718-85191737 None:intergenic 35.0%
GGGTGTGGTTGAAAATAATA+CGG - chr8_1:85191721-85191740 None:intergenic 35.0%
CTTAGAGTAGAAACTGTGAT+AGG - chr8_1:85191754-85191773 None:intergenic 35.0%
!!! GCTGTTGTTTTCTTCATTTC+TGG + chr8_1:85191859-85191878 Msa1221560:CDS 35.0%
GTAACATCATCCAATTCATC+AGG - chr8_1:85191934-85191953 None:intergenic 35.0%
ATGATGTTACTGCTCTTCAA+GGG + chr8_1:85191944-85191963 Msa1221560:CDS 35.0%
!! CTTTTTCATCTTCATGATGC+TGG + chr8_1:85191979-85191998 Msa1221560:CDS 35.0%
AACAAACAGCACAGTCAAAA+GGG - chr8_1:85192074-85192093 None:intergenic 35.0%
AAACAAACAGCACAGTCAAA+AGG - chr8_1:85192075-85192094 None:intergenic 35.0%
TTGAGCATGAAGATAAGCTT+AGG + chr8_1:85192103-85192122 Msa1221560:CDS 35.0%
!! TGAAAAGCATGGCTACATTT+TGG - chr8_1:85192135-85192154 None:intergenic 35.0%
! ATGTAGCCATGCTTTTCATA+TGG + chr8_1:85192137-85192156 Msa1221560:CDS 35.0%
TACACTCCATATGAAAAGCA+TGG - chr8_1:85192146-85192165 None:intergenic 35.0%
!! AGCAAATTAGCTCTACAAAG+AGG - chr8_1:85192201-85192220 None:intergenic 35.0%
AAACAATTGTGGTTCTCCTT+TGG + chr8_1:85192236-85192255 Msa1221560:CDS 35.0%
!! GATTCTAGAACAAGAACCAA+AGG - chr8_1:85192255-85192274 None:intergenic 35.0%
!! TTGGTTCTTGTTCTAGAATC+TGG + chr8_1:85192255-85192274 Msa1221560:CDS 35.0%
! AATCTGGTAGTGATACTTCA+AGG + chr8_1:85192271-85192290 Msa1221560:CDS 35.0%
! ATCTGGTAGTGATACTTCAA+GGG + chr8_1:85192272-85192291 Msa1221560:CDS 35.0%
ATTTCTACAGGTAGTGTTGT+TGG + chr8_1:85192321-85192340 Msa1221560:CDS 35.0%
AATTCTCATCTTGGTTGTTG+CGG + chr8_1:85192369-85192388 Msa1221560:CDS 35.0%
CATGATCCAAAAGTTGAAGT+TGG + chr8_1:85192435-85192454 Msa1221560:CDS 35.0%
! CTGTTAAGCTTGGAAAGTAT+AGG + chr8_1:85192484-85192503 Msa1221560:CDS 35.0%
! GGAAAGTATAGGAATGTTGA+TGG + chr8_1:85192495-85192514 Msa1221560:CDS 35.0%
! AAGTATAGGAATGTTGATGG+TGG + chr8_1:85192498-85192517 Msa1221560:CDS 35.0%
! AATGTTTTGCCTTTGATTCC+AGG + chr8_1:85192663-85192682 Msa1221560:CDS 35.0%
TGTTAAAGGTAGTACTAGTG+AGG + chr8_1:85192773-85192792 Msa1221560:CDS 35.0%
GTTAAAGGTAGTACTAGTGA+GGG + chr8_1:85192774-85192793 Msa1221560:CDS 35.0%
! ATGTAGCTGATTCATCTAGA+AGG + chr8_1:85192880-85192899 Msa1221560:CDS 35.0%
! TGTAGCTGATTCATCTAGAA+GGG + chr8_1:85192881-85192900 Msa1221560:CDS 35.0%
CTTCCAACATTGCTTTGTAA+TGG - chr8_1:85192924-85192943 None:intergenic 35.0%
TTACAAAGCAATGTTGGAAG+TGG + chr8_1:85192924-85192943 Msa1221560:CDS 35.0%
GATGATTTGAAGGGTAAGAA+TGG + chr8_1:85192951-85192970 Msa1221560:CDS 35.0%
AGAATGGCATGTTTCATACA+AGG + chr8_1:85192967-85192986 Msa1221560:CDS 35.0%
!!! ACTGTTTCTGAGATGGATTT+TGG + chr8_1:85192993-85193012 Msa1221560:CDS 35.0%
!! CTGAGATGGATTTTGGAAAA+TGG + chr8_1:85193000-85193019 Msa1221560:CDS 35.0%
TTTGGAAAATGGGAAAATGG+AGG + chr8_1:85193011-85193030 Msa1221560:CDS 35.0%
AAAGTCCTTCTAGCAAATGA+AGG - chr8_1:85193107-85193126 None:intergenic 35.0%
GCTCACTGGAAAACAAAATA+AGG + chr8_1:85193133-85193152 Msa1221560:CDS 35.0%
!! AAGGTGTTGTCACCTTGAAA+TGG - chr8_1:85191670-85191689 None:intergenic 40.0%
GAAACTGTGATAGGTGGAAA+TGG - chr8_1:85191745-85191764 None:intergenic 40.0%
AGAGTAGAAACTGTGATAGG+TGG - chr8_1:85191751-85191770 None:intergenic 40.0%
GATGATGTTACTGCTCTTCA+AGG + chr8_1:85191943-85191962 Msa1221560:CDS 40.0%
GGAAATTGTTCCAGAAAGAG+AGG + chr8_1:85192293-85192312 Msa1221560:CDS 40.0%
!! TTGGTAGGACTAGTTCAGTT+AGG + chr8_1:85192340-85192359 Msa1221560:CDS 40.0%
AGGACAGCAAATTCTCATCT+TGG + chr8_1:85192360-85192379 Msa1221560:CDS 40.0%
GATCCAAAAGTTGAAGTTGG+AGG + chr8_1:85192438-85192457 Msa1221560:CDS 40.0%
! TCTCCTCCAACTTCAACTTT+TGG - chr8_1:85192444-85192463 None:intergenic 40.0%
AAAGTTGAAGTTGGAGGAGA+TGG + chr8_1:85192444-85192463 Msa1221560:CDS 40.0%
!! TATAGGAATGTTGATGGTGG+AGG + chr8_1:85192501-85192520 Msa1221560:CDS 40.0%
!! ATAGGAATGTTGATGGTGGA+GGG + chr8_1:85192502-85192521 Msa1221560:CDS 40.0%
GCAACAATGTGGATAACAGA+AGG + chr8_1:85192538-85192557 Msa1221560:CDS 40.0%
GGATGAAACTTCATCATTGC+AGG + chr8_1:85192593-85192612 Msa1221560:CDS 40.0%
ATCCTATGACCTGGAATCAA+AGG - chr8_1:85192675-85192694 None:intergenic 40.0%
AGAGCTGAGGATGTTGTTAA+AGG + chr8_1:85192759-85192778 Msa1221560:CDS 40.0%
! TGGTATTGGAAGGAGTAGAA+AGG + chr8_1:85192800-85192819 Msa1221560:CDS 40.0%
! CTAGAAGGGCTGTTTCATTT+AGG + chr8_1:85192895-85192914 Msa1221560:CDS 40.0%
!! AAGGAGTACTGTTTCTGAGA+TGG + chr8_1:85192986-85193005 Msa1221560:CDS 40.0%
TTGCTAGAAGGACTTTGCTT+TGG + chr8_1:85193111-85193130 Msa1221560:CDS 40.0%
!! AAGGTGTTGTCACCTTGAAA+TGG - chr8_1:85191670-85191689 None:intergenic 40.0%
GAAACTGTGATAGGTGGAAA+TGG - chr8_1:85191745-85191764 None:intergenic 40.0%
AGAGTAGAAACTGTGATAGG+TGG - chr8_1:85191751-85191770 None:intergenic 40.0%
GATGATGTTACTGCTCTTCA+AGG + chr8_1:85191943-85191962 Msa1221560:CDS 40.0%
GGAAATTGTTCCAGAAAGAG+AGG + chr8_1:85192293-85192312 Msa1221560:CDS 40.0%
!! TTGGTAGGACTAGTTCAGTT+AGG + chr8_1:85192340-85192359 Msa1221560:CDS 40.0%
AGGACAGCAAATTCTCATCT+TGG + chr8_1:85192360-85192379 Msa1221560:CDS 40.0%
GATCCAAAAGTTGAAGTTGG+AGG + chr8_1:85192438-85192457 Msa1221560:CDS 40.0%
! TCTCCTCCAACTTCAACTTT+TGG - chr8_1:85192444-85192463 None:intergenic 40.0%
AAAGTTGAAGTTGGAGGAGA+TGG + chr8_1:85192444-85192463 Msa1221560:CDS 40.0%
!! TATAGGAATGTTGATGGTGG+AGG + chr8_1:85192501-85192520 Msa1221560:CDS 40.0%
!! ATAGGAATGTTGATGGTGGA+GGG + chr8_1:85192502-85192521 Msa1221560:CDS 40.0%
GCAACAATGTGGATAACAGA+AGG + chr8_1:85192538-85192557 Msa1221560:CDS 40.0%
GGATGAAACTTCATCATTGC+AGG + chr8_1:85192593-85192612 Msa1221560:CDS 40.0%
ATCCTATGACCTGGAATCAA+AGG - chr8_1:85192675-85192694 None:intergenic 40.0%
AGAGCTGAGGATGTTGTTAA+AGG + chr8_1:85192759-85192778 Msa1221560:CDS 40.0%
! TGGTATTGGAAGGAGTAGAA+AGG + chr8_1:85192800-85192819 Msa1221560:CDS 40.0%
! CTAGAAGGGCTGTTTCATTT+AGG + chr8_1:85192895-85192914 Msa1221560:CDS 40.0%
!! AAGGAGTACTGTTTCTGAGA+TGG + chr8_1:85192986-85193005 Msa1221560:CDS 40.0%
TTGCTAGAAGGACTTTGCTT+TGG + chr8_1:85193111-85193130 Msa1221560:CDS 40.0%
GGTGGTTGTTCTAATGGTGA+TGG - chr8_1:85191700-85191719 None:intergenic 45.0%
CTGTGATAGGTGGAAATGGT+GGG - chr8_1:85191741-85191760 None:intergenic 45.0%
ACTGTGATAGGTGGAAATGG+TGG - chr8_1:85191742-85191761 None:intergenic 45.0%
GAGTAGAGACCCTGATGAAT+TGG + chr8_1:85191921-85191940 Msa1221560:CDS 45.0%
GAAATTGCAGCCTCTCTTTC+TGG - chr8_1:85192306-85192325 None:intergenic 45.0%
AGAGAGGCTGCAATTTCTAC+AGG + chr8_1:85192309-85192328 Msa1221560:CDS 45.0%
! CTACAGGTAGTGTTGTTGGT+AGG + chr8_1:85192325-85192344 Msa1221560:CDS 45.0%
! ATTCGGAGGTGATTTGGCTT+CGG + chr8_1:85192401-85192420 Msa1221560:CDS 45.0%
!! TAGGAATGTTGATGGTGGAG+GGG + chr8_1:85192503-85192522 Msa1221560:CDS 45.0%
AGGAAGTAGCAGCAACAATG+TGG + chr8_1:85192527-85192546 Msa1221560:CDS 45.0%
TGCCTTTGATTCCAGGTCAT+AGG + chr8_1:85192670-85192689 Msa1221560:CDS 45.0%
GACATTGCAATCCTATGACC+TGG - chr8_1:85192684-85192703 None:intergenic 45.0%
CTTTGATTCAGCTAGAGCTG+AGG + chr8_1:85192746-85192765 Msa1221560:CDS 45.0%
GGAAAATGGGAAAATGGAGG+AGG + chr8_1:85193014-85193033 Msa1221560:CDS 45.0%
GGAGGAGGAAGTGAATTTAG+TGG + chr8_1:85193029-85193048 Msa1221560:CDS 45.0%
! GAGCACCTTCATTTGCTAGA+AGG + chr8_1:85193099-85193118 Msa1221560:CDS 45.0%
GGTGGTTGTTCTAATGGTGA+TGG - chr8_1:85191700-85191719 None:intergenic 45.0%
CTGTGATAGGTGGAAATGGT+GGG - chr8_1:85191741-85191760 None:intergenic 45.0%
ACTGTGATAGGTGGAAATGG+TGG - chr8_1:85191742-85191761 None:intergenic 45.0%
GAGTAGAGACCCTGATGAAT+TGG + chr8_1:85191921-85191940 Msa1221560:CDS 45.0%
GAAATTGCAGCCTCTCTTTC+TGG - chr8_1:85192306-85192325 None:intergenic 45.0%
AGAGAGGCTGCAATTTCTAC+AGG + chr8_1:85192309-85192328 Msa1221560:CDS 45.0%
! CTACAGGTAGTGTTGTTGGT+AGG + chr8_1:85192325-85192344 Msa1221560:CDS 45.0%
! ATTCGGAGGTGATTTGGCTT+CGG + chr8_1:85192401-85192420 Msa1221560:CDS 45.0%
!! TAGGAATGTTGATGGTGGAG+GGG + chr8_1:85192503-85192522 Msa1221560:CDS 45.0%
AGGAAGTAGCAGCAACAATG+TGG + chr8_1:85192527-85192546 Msa1221560:CDS 45.0%
TGCCTTTGATTCCAGGTCAT+AGG + chr8_1:85192670-85192689 Msa1221560:CDS 45.0%
GACATTGCAATCCTATGACC+TGG - chr8_1:85192684-85192703 None:intergenic 45.0%
CTTTGATTCAGCTAGAGCTG+AGG + chr8_1:85192746-85192765 Msa1221560:CDS 45.0%
GGAAAATGGGAAAATGGAGG+AGG + chr8_1:85193014-85193033 Msa1221560:CDS 45.0%
GGAGGAGGAAGTGAATTTAG+TGG + chr8_1:85193029-85193048 Msa1221560:CDS 45.0%
! GAGCACCTTCATTTGCTAGA+AGG + chr8_1:85193099-85193118 Msa1221560:CDS 45.0%
!! ATAGGTGGAAATGGTGGGTG+TGG - chr8_1:85191736-85191755 None:intergenic 50.0%
TCATCAGGGTCTCTACTCTG+AGG - chr8_1:85191919-85191938 None:intergenic 50.0%
CATCTTGGTTGTTGCGGAGA+CGG + chr8_1:85192375-85192394 Msa1221560:CDS 50.0%
TGTTGCGGAGACGGTGAATT+CGG + chr8_1:85192384-85192403 Msa1221560:CDS 50.0%
CGGTGAATTCGGAGGTGATT+TGG + chr8_1:85192395-85192414 Msa1221560:CDS 50.0%
TGAAGTTGGAGGAGATGGTG+TGG + chr8_1:85192449-85192468 Msa1221560:CDS 50.0%
!! AATGTTGATGGTGGAGGGGA+AGG + chr8_1:85192507-85192526 Msa1221560:CDS 50.0%
!! ACTAGTGAGGGTGCTGGTAT+TGG + chr8_1:85192786-85192805 Msa1221560:CDS 50.0%
! AGGACTTTGCTTTGGCTCAC+TGG + chr8_1:85193119-85193138 Msa1221560:CDS 50.0%
!! ATAGGTGGAAATGGTGGGTG+TGG - chr8_1:85191736-85191755 None:intergenic 50.0%
TCATCAGGGTCTCTACTCTG+AGG - chr8_1:85191919-85191938 None:intergenic 50.0%
CATCTTGGTTGTTGCGGAGA+CGG + chr8_1:85192375-85192394 Msa1221560:CDS 50.0%
TGTTGCGGAGACGGTGAATT+CGG + chr8_1:85192384-85192403 Msa1221560:CDS 50.0%
CGGTGAATTCGGAGGTGATT+TGG + chr8_1:85192395-85192414 Msa1221560:CDS 50.0%
TGAAGTTGGAGGAGATGGTG+TGG + chr8_1:85192449-85192468 Msa1221560:CDS 50.0%
!! AATGTTGATGGTGGAGGGGA+AGG + chr8_1:85192507-85192526 Msa1221560:CDS 50.0%
!! ACTAGTGAGGGTGCTGGTAT+TGG + chr8_1:85192786-85192805 Msa1221560:CDS 50.0%
! AGGACTTTGCTTTGGCTCAC+TGG + chr8_1:85193119-85193138 Msa1221560:CDS 50.0%
! GGTAGTACTAGTGAGGGTGC+TGG + chr8_1:85192780-85192799 Msa1221560:CDS 55.0%
!! GTGAGGGTGCTGGTATTGGA+AGG + chr8_1:85192790-85192809 Msa1221560:CDS 55.0%
! GGTAGTACTAGTGAGGGTGC+TGG + chr8_1:85192780-85192799 Msa1221560:CDS 55.0%
!! GTGAGGGTGCTGGTATTGGA+AGG + chr8_1:85192790-85192809 Msa1221560:CDS 55.0%
TGCGGAGACGGTGAATTCGG+AGG + chr8_1:85192387-85192406 Msa1221560:CDS 60.0%
TGCGGAGACGGTGAATTCGG+AGG + chr8_1:85192387-85192406 Msa1221560:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 85191649 85193187 85191649 ID=Msa1221560;Name=Msa1221560
chr8_1 mRNA 85191649 85193187 85191649 ID=Msa1221560-mRNA-1;Parent=Msa1221560;Name=Msa1221560-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|512
chr8_1 exon 85191649 85193187 85191649 ID=Msa1221560-mRNA-1:exon:30659;Parent=Msa1221560-mRNA-1
chr8_1 CDS 85191649 85193187 85191649 ID=Msa1221560-mRNA-1:cds;Parent=Msa1221560-mRNA-1
Gene Sequence

>Msa1221560

ATGGGTAGAAGTTTTGTGCCATTTCAAGGTGACAACACCTTTATGACTCCATCACCATTAGAACAACCACCGTATTATTTTCAACCACACCCACCATTTCCACCTATCACAGTTTCTACTCTAAGATCTAATAATAATAATAATAATTTCAATTTTAACAATAACACCTTAAAGGTTAGTCCAAGTATTCTTATAATCATTACAATATTAGCTGTTGTTTTCTTCATTTCTGGTTTGCTTCATCTCTTAGTTAGATTTCTATGGAGACCTCAGAGTAGAGACCCTGATGAATTGGATGATGTTACTGCTCTTCAAGGGCAATTGCAACAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAATCATTCATTGATACACTTCCAGTGTTTCTTTACAAAACTATTATAGGATTGAAAGTGAACCCTTTTGACTGTGCTGTTTGTTTGTGTGAATTTGAGCATGAAGATAAGCTTAGGTTGTTGCCAAAATGTAGCCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTATCTCACTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTCCATGATTTCAACACAAACAATTGTGGTTCTCCTTTGGTTCTTGTTCTAGAATCTGGTAGTGATACTTCAAGGGAAATTGTTCCAGAAAGAGAGGCTGCAATTTCTACAGGTAGTGTTGTTGGTAGGACTAGTTCAGTTAGGACAGCAAATTCTCATCTTGGTTGTTGCGGAGACGGTGAATTCGGAGGTGATTTGGCTTCGGTTGAAAACATTCATGATCCAAAAGTTGAAGTTGGAGGAGATGGTGTGGAGAAAGTTGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGCAGCAACAATGTGGATAACAGAAGGTGTTTTTCAATGGGATCATTTGCTTATATTATGGATGAAACTTCATCATTGCAGGTACCAATTAGAACTCCAATAAAACAGCAATTGAGTAAGAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGTCATAGGATTGCAATGTCAGAATGTGATTGTGAATCCAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGCTAGAGCTGAGGATGTTGTTAAAGGTAGTACTAGTGAGGGTGCTGGTATTGGAAGGAGTAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAAAAATGGTGATGTAGCTGATTCATCTAGAAGGGCTGTTTCATTTAGGTTTCCATTACAAAGCAATGTTGGAAGTGGTAATGATGATTTGAAGGGTAAGAATGGCATGTTTCATACAAGGAGTACTGTTTCTGAGATGGATTTTGGAAAATGGGAAAATGGAGGAGGAAGTGAATTTAGTGGATATGATGAAGAAAATCAAAGCTGCTATAGTATGGATTCTCAAGCTAGAGCACCTTCATTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAAACAAAATAAGGTTGTTCATTCATCAACTACTTCAACCCTCTAG
Protein sequence

>Msa1221560

MGRSFVPFQGDNTFMTPSPLEQPPYYFQPHPPFPPITVSTLRSNNNNNNFNFNNNTLKVSPSILIIITILAVVFFISGLLHLLVRFLWRPQSRDPDELDDVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFEHEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTNNCGSPLVLVLESGSDTSREIVPEREAAISTGSVVGRTSSVRTANSHLGCCGDGEFGGDLASVENIHDPKVEVGGDGVEKVVTVKLGKYRNVDGGGEGSSSNNVDNRRCFSMGSFAYIMDETSSLQVPIRTPIKQQLSKKKKNVLPLIPGHRIAMSECDCESRRDFKFASFDSARAEDVVKGSTSEGAGIGRSRKESFSISKIWLRGKKDKKNGDVADSSRRAVSFRFPLQSNVGSGNDDLKGKNGMFHTRSTVSEMDFGKWENGGGSEFSGYDEENQSCYSMDSQARAPSFARRTLLWLTGKQNKVVHSSTTSTL*