AlfalfaGEDB | Msa1221560

M. sativa cultivar zhongmu-4 / Msa1221560

KEGG: K19041
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF13639.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221560	XP_003610233.2	97.266	512	13	1	1	512	1	511	0.0	1028

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221560	sp\|Q940Q4\|ATL13_ARATH	48.322	447	155	17	90	512	78	472	2.19e-107	331

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221560	G7JEB6	97.266	512	13	1	1	512	1	511	0.0	1028

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005710	Msa1221560	0.826749	2.286854e-54	-8.615850e-47
Msa0008340	Msa1221560	0.822997	1.755360e-53	-8.615850e-47
Msa0008850	Msa1221560	0.801812	7.546409e-49	-8.615850e-47
Msa0011720	Msa1221560	0.830853	2.324251e-55	-8.615850e-47
Msa0011850	Msa1221560	0.806087	9.753926e-50	-8.615850e-47
Msa0012440	Msa1221560	0.802118	6.529732e-49	-8.615850e-47
Msa0018220	Msa1221560	0.837469	5.103091e-57	-8.615850e-47
Msa0020630	Msa1221560	0.821284	4.382030e-53	-8.615850e-47
Msa0024680	Msa1221560	0.858483	7.989133e-63	-8.615850e-47
Msa0027540	Msa1221560	0.864250	1.392062e-64	-8.615850e-47

Showing 1 to 10 of 711 entries

Previous1 2 3 4 5…72Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221560	MtrunA17_Chr4g0073141	97.266	512	13	1	1	512	1	511	0.0	1028
Msa1221560	MtrunA17_Chr6g0453511	96.552	145	5	0	308	452	1	145	2.49e-94	283
Msa1221560	MtrunA17_Chr5g0413841	38.095	420	153	16	9	408	9	341	3.68e-67	221
Msa1221560	MtrunA17_Chr6g0451161	40.110	364	132	13	58	407	66	357	1.13e-63	212
Msa1221560	MtrunA17_Chr4g0059281	36.160	401	140	15	16	407	6	299	1.60e-61	204
Msa1221560	MtrunA17_Chr8g0364881	40.483	373	123	18	63	407	5	306	6.74e-60	201
Msa1221560	MtrunA17_Chr1g0191601	42.177	147	77	2	47	191	33	173	5.42e-30	120
Msa1221560	MtrunA17_Chr3g0132491	41.304	138	72	3	56	191	52	182	1.19e-28	117
Msa1221560	MtrunA17_Chr7g0273051	39.073	151	79	4	43	191	27	166	2.90e-26	110
Msa1221560	MtrunA17_Chr5g0411081	40.136	147	78	3	60	198	56	200	1.38e-25	108

Showing 1 to 10 of 111 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221560	AT4G30400.1	48.322	447	155	17	90	512	78	472	2.23e-108	331
Msa1221560	AT2G18650.1	45.228	482	156	16	48	509	28	421	9.16e-104	317
Msa1221560	AT5G40250.1	40.470	383	123	15	58	412	40	345	7.18e-65	215
Msa1221560	AT5G57750.1	58.282	163	63	2	59	216	32	194	3.74e-55	184
Msa1221560	AT1G23980.1	60.417	144	46	3	58	191	48	190	4.94e-52	181
Msa1221560	AT3G48030.2	51.128	133	60	1	63	190	42	174	7.03e-36	135
Msa1221560	AT3G48030.1	51.128	133	60	1	63	190	120	252	1.35e-35	136
Msa1221560	AT1G72200.1	39.416	137	76	3	58	191	58	190	3.46e-25	107
Msa1221560	AT4G40070.1	33.333	168	102	3	27	190	8	169	8.39e-25	105
Msa1221560	AT2G35000.1	37.405	131	80	1	63	191	51	181	2.94e-24	104

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

Find 103 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAACAGCACAGTCAAA+AGG	0.440166	8_1:-85192072	None:intergenic
AAACAATTGTGGTTCTCCTT+TGG	0.389738	8_1:+85192236	Msa1221560:CDS
AAAGTCCTTCTAGCAAATGA+AGG	0.572310	8_1:-85193104	None:intergenic
AAAGTTGAAGTTGGAGGAGA+TGG	0.513670	8_1:+85192444	Msa1221560:CDS
AAAGTTGTTACTGTTAAGCT+TGG	0.427283	8_1:+85192474	Msa1221560:CDS
AAATCAAAGCTGCTATAGTA+TGG	0.346299	8_1:+85193064	Msa1221560:CDS
AACAAACAGCACAGTCAAAA+GGG	0.510919	8_1:-85192071	None:intergenic
AAGGAGTACTGTTTCTGAGA+TGG	0.523720	8_1:+85192986	Msa1221560:CDS
AAGGTGTTGTCACCTTGAAA+TGG	0.482527	8_1:-85191667	None:intergenic
AAGTATAGGAATGTTGATGG+TGG	0.610465	8_1:+85192498	Msa1221560:CDS

Showing 1 to 10 of 103 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATACTTGGACTAACCTTTA+AGG	-	chr8_1:85191818-85191837	None:intergenic	30.0%
TAACATCATCCAATTCATCA+GGG	-	chr8_1:85191933-85191952	None:intergenic	30.0%
GAAGTGTATCAATGAATGAT+TGG	-	chr8_1:85192011-85192030	None:intergenic	30.0%
GATTTCAACACAAACAATTG+TGG	+	chr8_1:85192225-85192244	Msa1221560:CDS	30.0%
AAAGTTGTTACTGTTAAGCT+TGG	+	chr8_1:85192474-85192493	Msa1221560:CDS	30.0%
GGGATCATTTGCTTATATTA+TGG	+	chr8_1:85192572-85192591	Msa1221560:CDS	30.0%
TTTCCATTACAAAGCAATGT+TGG	+	chr8_1:85192918-85192937	Msa1221560:CDS	30.0%
AAATCAAAGCTGCTATAGTA+TGG	+	chr8_1:85193064-85193083	Msa1221560:CDS	30.0%
AATACTTGGACTAACCTTTA+AGG	-	chr8_1:85191818-85191837	None:intergenic	30.0%
TAACATCATCCAATTCATCA+GGG	-	chr8_1:85191933-85191952	None:intergenic	30.0%

Showing 1 to 10 of 236 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	85191649	85193187	85191649	ID=Msa1221560;Name=Msa1221560
chr8_1	mRNA	85191649	85193187	85191649	ID=Msa1221560-mRNA-1;Parent=Msa1221560;Name=Msa1221560-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|512
chr8_1	exon	85191649	85193187	85191649	ID=Msa1221560-mRNA-1:exon:30659;Parent=Msa1221560-mRNA-1
chr8_1	CDS	85191649	85193187	85191649	ID=Msa1221560-mRNA-1:cds;Parent=Msa1221560-mRNA-1

Gene Sequence

>Msa1221560

ATGGGTAGAAGTTTTGTGCCATTTCAAGGTGACAACACCTTTATGACTCCATCACCATTAGAACAACCACCGTATTATTTTCAACCACACCCACCATTTCCACCTATCACAGTTTCTACTCTAAGATCTAATAATAATAATAATAATTTCAATTTTAACAATAACACCTTAAAGGTTAGTCCAAGTATTCTTATAATCATTACAATATTAGCTGTTGTTTTCTTCATTTCTGGTTTGCTTCATCTCTTAGTTAGATTTCTATGGAGACCTCAGAGTAGAGACCCTGATGAATTGGATGATGTTACTGCTCTTCAAGGGCAATTGCAACAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAATCATTCATTGATACACTTCCAGTGTTTCTTTACAAAACTATTATAGGATTGAAAGTGAACCCTTTTGACTGTGCTGTTTGTTTGTGTGAATTTGAGCATGAAGATAAGCTTAGGTTGTTGCCAAAATGTAGCCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTATCTCACTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTCCATGATTTCAACACAAACAATTGTGGTTCTCCTTTGGTTCTTGTTCTAGAATCTGGTAGTGATACTTCAAGGGAAATTGTTCCAGAAAGAGAGGCTGCAATTTCTACAGGTAGTGTTGTTGGTAGGACTAGTTCAGTTAGGACAGCAAATTCTCATCTTGGTTGTTGCGGAGACGGTGAATTCGGAGGTGATTTGGCTTCGGTTGAAAACATTCATGATCCAAAAGTTGAAGTTGGAGGAGATGGTGTGGAGAAAGTTGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGCAGCAACAATGTGGATAACAGAAGGTGTTTTTCAATGGGATCATTTGCTTATATTATGGATGAAACTTCATCATTGCAGGTACCAATTAGAACTCCAATAAAACAGCAATTGAGTAAGAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGTCATAGGATTGCAATGTCAGAATGTGATTGTGAATCCAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGCTAGAGCTGAGGATGTTGTTAAAGGTAGTACTAGTGAGGGTGCTGGTATTGGAAGGAGTAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAAAAATGGTGATGTAGCTGATTCATCTAGAAGGGCTGTTTCATTTAGGTTTCCATTACAAAGCAATGTTGGAAGTGGTAATGATGATTTGAAGGGTAAGAATGGCATGTTTCATACAAGGAGTACTGTTTCTGAGATGGATTTTGGAAAATGGGAAAATGGAGGAGGAAGTGAATTTAGTGGATATGATGAAGAAAATCAAAGCTGCTATAGTATGGATTCTCAAGCTAGAGCACCTTCATTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAAACAAAATAAGGTTGTTCATTCATCAACTACTTCAACCCTCTAG

Protein sequence

>Msa1221560

MGRSFVPFQGDNTFMTPSPLEQPPYYFQPHPPFPPITVSTLRSNNNNNNFNFNNNTLKVSPSILIIITILAVVFFISGLLHLLVRFLWRPQSRDPDELDDVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFEHEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTNNCGSPLVLVLESGSDTSREIVPEREAAISTGSVVGRTSSVRTANSHLGCCGDGEFGGDLASVENIHDPKVEVGGDGVEKVVTVKLGKYRNVDGGGEGSSSNNVDNRRCFSMGSFAYIMDETSSLQVPIRTPIKQQLSKKKKNVLPLIPGHRIAMSECDCESRRDFKFASFDSARAEDVVKGSTSEGAGIGRSRKESFSISKIWLRGKKDKKNGDVADSSRRAVSFRFPLQSNVGSGNDDLKGKNGMFHTRSTVSEMDFGKWENGGGSEFSGYDEENQSCYSMDSQARAPSFARRTLLWLTGKQNKVVHSSTTSTL*