Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636180 | XP_013455414.1 | 98.785 | 494 | 6 | 0 | 1 | 494 | 1 | 494 | 0.0 | 998 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636180 | sp|Q8VYT5|FB254_ARATH | 58.266 | 496 | 185 | 6 | 1 | 494 | 1 | 476 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094100 | Msa0636180 | 0.800331 | 1.515492e-48 | -8.615850e-47 |
| Msa0105420 | Msa0636180 | 0.822191 | 2.703307e-53 | -8.615850e-47 |
| Msa0604360 | Msa0636180 | 0.870422 | 1.476751e-66 | -8.615850e-47 |
| Msa0621890 | Msa0636180 | 0.810332 | 1.215249e-50 | -8.615850e-47 |
| Msa0636180 | Msa0647130 | 0.815399 | 9.428693e-52 | -8.615850e-47 |
| Msa0636180 | Msa0677400 | 0.883709 | 3.565861e-71 | -8.615850e-47 |
| Msa0636180 | Msa0754720 | -0.809753 | 1.618978e-50 | -8.615850e-47 |
| Msa0636180 | Msa0756630 | -0.817586 | 3.054604e-52 | -8.615850e-47 |
| Msa0636180 | Msa0829620 | 0.800640 | 1.310562e-48 | -8.615850e-47 |
| Msa0636180 | Msa0837990 | 0.801400 | 9.167751e-49 | -8.615850e-47 |
| Msa0636180 | Msa0867890 | 0.806113 | 9.632483e-50 | -8.615850e-47 |
| Msa0636180 | Msa0891040 | 0.829038 | 6.437852e-55 | -8.615850e-47 |
| Msa0636180 | Msa0946120 | 0.816068 | 6.691670e-52 | -8.615850e-47 |
| Msa0636180 | Msa1008490 | 0.821526 | 3.852233e-53 | -8.615850e-47 |
| Msa0636180 | Msa1019020 | 0.811831 | 5.749419e-51 | -8.615850e-47 |
| Msa0636180 | Msa1020710 | 0.803311 | 3.704194e-49 | -8.615850e-47 |
| Msa0636180 | Msa1036390 | 0.800841 | 1.192991e-48 | -8.615850e-47 |
| Msa0636180 | Msa1040120 | 0.843916 | 1.043890e-58 | -8.615850e-47 |
| Msa0636180 | Msa1055280 | 0.805783 | 1.129995e-49 | -8.615850e-47 |
| Msa0636180 | Msa1083410 | 0.820939 | 5.261418e-53 | -8.615850e-47 |
| Msa0636180 | Msa1098560 | 0.833944 | 3.987133e-56 | -8.615850e-47 |
| Msa0636180 | Msa1104000 | 0.818731 | 1.682222e-52 | -8.615850e-47 |
| Msa0636180 | Msa1128160 | 0.834580 | 2.760561e-56 | -8.615850e-47 |
| Msa0636180 | Msa1147570 | 0.817173 | 3.782326e-52 | -8.615850e-47 |
| Msa0636180 | Msa1165360 | 0.832774 | 7.800913e-56 | -8.615850e-47 |
| Msa0636180 | Msa1220230 | 0.812616 | 3.876316e-51 | -8.615850e-47 |
| Msa0636180 | Msa1221560 | 0.826126 | 3.219305e-54 | -8.615850e-47 |
| Msa0636180 | Msa1222970 | 0.831983 | 1.225148e-55 | -8.615850e-47 |
| Msa0636180 | Msa1240310 | 0.813487 | 2.496293e-51 | -8.615850e-47 |
| Msa0636180 | Msa1264020 | 0.821750 | 3.419335e-53 | -8.615850e-47 |
| Msa0636180 | Msa1265960 | 0.818575 | 1.824920e-52 | -8.615850e-47 |
| Msa0636180 | Msa1267220 | 0.811416 | 7.077655e-51 | -8.615850e-47 |
| Msa0636180 | Msa1271280 | 0.804246 | 2.368806e-49 | -8.615850e-47 |
| Msa0636180 | Msa1271300 | 0.803755 | 2.996329e-49 | -8.615850e-47 |
| Msa0636180 | Msa1308380 | 0.805482 | 1.306572e-49 | -8.615850e-47 |
| Msa0636180 | Msa1318240 | 0.806200 | 9.234388e-50 | -8.615850e-47 |
| Msa0636180 | Msa1320740 | 0.802423 | 5.649266e-49 | -8.615850e-47 |
| Msa0636180 | Msa1367080 | 0.833451 | 5.292778e-56 | -8.615850e-47 |
| Msa0636180 | Msa1427760 | 0.816336 | 5.827009e-52 | -8.615850e-47 |
| Msa0636180 | Msa1431000 | 0.814152 | 1.781725e-51 | -8.615850e-47 |
| Msa0636180 | Msa1447090 | 0.805452 | 1.326027e-49 | -8.615850e-47 |
| Msa0636180 | Msa1465900 | 0.810048 | 1.398885e-50 | -8.615850e-47 |
| Msa0140780 | Msa0636180 | 0.804038 | 2.616391e-49 | -8.615850e-47 |
| Msa0160010 | Msa0636180 | 0.807972 | 3.893205e-50 | -8.615850e-47 |
| Msa0192500 | Msa0636180 | 0.800266 | 1.561987e-48 | -8.615850e-47 |
| Msa0217400 | Msa0636180 | 0.804495 | 2.101602e-49 | -8.615850e-47 |
| Msa0233190 | Msa0636180 | 0.800148 | 1.651083e-48 | -8.615850e-47 |
| Msa0393680 | Msa0636180 | 0.824288 | 8.754406e-54 | -8.615850e-47 |
| Msa0414950 | Msa0636180 | -0.805242 | 1.467522e-49 | -8.615850e-47 |
| Msa0423360 | Msa0636180 | -0.817864 | 2.643266e-52 | -8.615850e-47 |
| Msa0425010 | Msa0636180 | 0.812035 | 5.191237e-51 | -8.615850e-47 |
| Msa0480320 | Msa0636180 | 0.802265 | 6.089364e-49 | -8.615850e-47 |
| Msa0243100 | Msa0636180 | 0.808018 | 3.806113e-50 | -8.615850e-47 |
| Msa0257250 | Msa0636180 | 0.820606 | 6.275549e-53 | -8.615850e-47 |
| Msa0260820 | Msa0636180 | -0.802764 | 4.806004e-49 | -8.615850e-47 |
| Msa0264350 | Msa0636180 | 0.816316 | 5.888098e-52 | -8.615850e-47 |
| Msa0266000 | Msa0636180 | -0.804814 | 1.803220e-49 | -8.615850e-47 |
| Msa0269360 | Msa0636180 | 0.805195 | 1.500844e-49 | -8.615850e-47 |
| Msa0270270 | Msa0636180 | 0.811857 | 5.677320e-51 | -8.615850e-47 |
| Msa0275670 | Msa0636180 | 0.826859 | 2.152269e-54 | -8.615850e-47 |
| Msa0287650 | Msa0636180 | 0.806045 | 9.954842e-50 | -8.615850e-47 |
| Msa0304740 | Msa0636180 | 0.821205 | 4.570409e-53 | -8.615850e-47 |
| Msa0311580 | Msa0636180 | 0.804208 | 2.412430e-49 | -8.615850e-47 |
| Msa0331590 | Msa0636180 | 0.818915 | 1.527573e-52 | -8.615850e-47 |
| Msa0333720 | Msa0636180 | -0.817866 | 2.639790e-52 | -8.615850e-47 |
| Msa0334350 | Msa0636180 | 0.827879 | 1.225662e-54 | -8.615850e-47 |
| Msa0335040 | Msa0636180 | 0.801480 | 8.826494e-49 | -8.615850e-47 |
| Msa0342200 | Msa0636180 | 0.800987 | 1.113577e-48 | -8.615850e-47 |
| Msa0516320 | Msa0636180 | 0.807785 | 4.265172e-50 | -8.615850e-47 |
| Msa0540870 | Msa0636180 | 0.870273 | 1.652287e-66 | -8.615850e-47 |
| Msa0581760 | Msa0636180 | 0.805085 | 1.582644e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636180 | MtrunA17_Chr4g0018891 | 98.785 | 494 | 6 | 0 | 1 | 494 | 1 | 494 | 0.0 | 998 |
| Msa0636180 | MtrunA17_Chr3g0079141 | 64.228 | 492 | 150 | 9 | 10 | 494 | 7 | 479 | 0.0 | 614 |
| Msa0636180 | MtrunA17_Chr2g0286991 | 31.948 | 385 | 235 | 17 | 82 | 447 | 11 | 387 | 5.85e-25 | 108 |
| Msa0636180 | MtrunA17_Chr2g0286991 | 27.239 | 268 | 153 | 11 | 189 | 447 | 256 | 490 | 7.72e-13 | 70.9 |
| Msa0636180 | MtrunA17_Chr4g0004901 | 28.346 | 254 | 169 | 7 | 216 | 464 | 371 | 616 | 4.38e-16 | 81.3 |
| Msa0636180 | MtrunA17_Chr4g0004901 | 23.165 | 436 | 261 | 10 | 82 | 486 | 64 | 456 | 2.27e-11 | 66.2 |
| Msa0636180 | MtrunA17_Chr1g0212071 | 27.604 | 384 | 240 | 18 | 82 | 445 | 20 | 385 | 2.15e-15 | 78.2 |
| Msa0636180 | MtrunA17_Chr1g0212071 | 30.435 | 207 | 114 | 8 | 261 | 464 | 91 | 270 | 3.54e-13 | 71.2 |
| Msa0636180 | MtrunA17_Chr1g0149351 | 25.538 | 325 | 179 | 12 | 189 | 451 | 202 | 525 | 3.23e-12 | 68.9 |
| Msa0636180 | MtrunA17_Chr7g0272131 | 22.495 | 529 | 252 | 18 | 61 | 452 | 4 | 511 | 3.34e-12 | 68.9 |
| Msa0636180 | MtrunA17_Chr7g0272131 | 29.435 | 248 | 154 | 9 | 189 | 425 | 401 | 638 | 6.97e-11 | 64.7 |
| Msa0636180 | MtrunA17_Chr1g0152951 | 24.331 | 411 | 235 | 15 | 82 | 430 | 64 | 460 | 6.87e-11 | 64.7 |
| Msa0636180 | MtrunA17_Chr4g0063841 | 24.620 | 329 | 211 | 12 | 189 | 482 | 219 | 545 | 9.98e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636180 | AT5G07670.1 | 58.266 | 496 | 185 | 6 | 1 | 494 | 1 | 476 | 0.0 | 552 |
| Msa0636180 | AT5G51380.1 | 56.341 | 481 | 203 | 3 | 14 | 493 | 4 | 478 | 0.0 | 520 |
| Msa0636180 | AT5G51370.2 | 59.753 | 405 | 162 | 1 | 90 | 494 | 40 | 443 | 2.18e-162 | 468 |
| Msa0636180 | AT5G51370.1 | 58.044 | 317 | 132 | 1 | 90 | 406 | 40 | 355 | 8.75e-118 | 350 |
| Msa0636180 | AT4G15475.1 | 27.919 | 394 | 245 | 12 | 82 | 450 | 11 | 390 | 1.01e-22 | 102 |
| Msa0636180 | AT4G15475.1 | 26.140 | 329 | 203 | 11 | 132 | 452 | 199 | 495 | 9.50e-17 | 83.6 |
| Msa0636180 | AT5G23340.1 | 25.495 | 404 | 238 | 17 | 82 | 453 | 10 | 382 | 1.06e-14 | 76.3 |
| Msa0636180 | AT2G25490.1 | 25.253 | 297 | 186 | 10 | 189 | 451 | 216 | 510 | 4.37e-13 | 72.0 |
| Msa0636180 | AT2G25490.1 | 24.286 | 280 | 181 | 11 | 189 | 450 | 348 | 614 | 2.31e-11 | 66.6 |
Find 133 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGAAATTGGGGAAATT+AGG | 0.130048 | 4_3:-26031795 | None:intergenic |
| AGTTTCTTCAATGGCGAATT+AGG | 0.133712 | 4_3:-26031654 | None:intergenic |
| TTGATCAATGATTGAGAAAT+TGG | 0.141986 | 4_3:-26031805 | None:intergenic |
| TCCGGGACTCGATGAGTATT+TGG | 0.148385 | 4_3:+26032625 | Msa0636180:CDS |
| GCAACAACTATTTGGTTTAA+AGG | 0.182187 | 4_3:-26031723 | None:intergenic |
| GGTTCGGTTGTTTCGGATAT+TGG | 0.212698 | 4_3:+26032380 | Msa0636180:CDS |
| TATCTGGTAGATTGATTTAT+AGG | 0.229578 | 4_3:+26031979 | Msa0636180:CDS |
| ACTTGAACCCTTCTCAAATT+AGG | 0.239059 | 4_3:-26032197 | None:intergenic |
| TGCTAGGGAGATTATTATTC+AGG | 0.242284 | 4_3:+26032739 | Msa0636180:CDS |
| CCTGTTGAGGTTATTGATAA+TGG | 0.245467 | 4_3:+26032149 | Msa0636180:CDS |
| GAACACGGTGGTCTGATTTA+TGG | 0.249895 | 4_3:+26031679 | Msa0636180:CDS |
| TTGCAGCAGCAACAACTATT+TGG | 0.253604 | 4_3:-26031731 | None:intergenic |
| GTAAAATTGCTTTACTTAGA+AGG | 0.276039 | 4_3:+26033605 | Msa0636180:CDS |
| CAGTTCACCATAGTGGAAAT+TGG | 0.281717 | 4_3:+26034282 | Msa0636180:three_prime_UTR |
| TTCACATTTCTCTGTGAATC+TGG | 0.289076 | 4_3:-26031876 | None:intergenic |
| TTCTTTGAGAGTAGTAAATA+AGG | 0.290782 | 4_3:-26033750 | None:intergenic |
| AATCATGTTGATTTGATTCA+TGG | 0.312777 | 4_3:+26032014 | Msa0636180:CDS |
| GGCGAATTAGGGTTAGGGTT+AGG | 0.312829 | 4_3:-26031642 | None:intergenic |
| TTTGATGGGATTAAGGCTAT+TGG | 0.316937 | 4_3:+26032470 | Msa0636180:CDS |
| AAGTCTTGTGGGGATTAGTA+TGG | 0.317529 | 4_3:+26033811 | Msa0636180:CDS |
| TGATCAATGATTGAGAAATT+GGG | 0.319273 | 4_3:-26031804 | None:intergenic |
| GCGAATTAGGGTTAGGGTTA+GGG | 0.322778 | 4_3:-26031641 | None:intergenic |
| CTGTTGAGGTTATTGATAAT+GGG | 0.336909 | 4_3:+26032150 | Msa0636180:CDS |
| AATCAACATGATTAAGATTA+GGG | 0.341888 | 4_3:-26032004 | None:intergenic |
| TTGAGAAATTGGGGAAATTA+GGG | 0.342646 | 4_3:-26031794 | None:intergenic |
| TCGGCTTTGCAACTGTTTGC+AGG | 0.351431 | 4_3:+26032789 | Msa0636180:CDS |
| GTTTCTTCAATGGCGAATTA+GGG | 0.356220 | 4_3:-26031653 | None:intergenic |
| TGAAATGGGTTTGTTAAGTT+TGG | 0.356585 | 4_3:+26032232 | Msa0636180:CDS |
| GGGTTAGTTGCTTTAGCTAA+TGG | 0.358130 | 4_3:+26032170 | Msa0636180:CDS |
| TGTCTGTGGGCCTGTTGCTC+TGG | 0.358423 | 4_3:+26034369 | Msa0636180:three_prime_UTR |
| GGAAGAAGTGATTTCGTATC+TGG | 0.363751 | 4_3:-26033785 | None:intergenic |
| GATCGATTCGGATTCGTGAT+TGG | 0.364905 | 4_3:+26031946 | Msa0636180:CDS |
| ATTACGGAACAATGGTGATT+TGG | 0.365326 | 4_3:+26033995 | Msa0636180:three_prime_UTR |
| CAATTTCCACTATGGTGAAC+TGG | 0.373743 | 4_3:-26034281 | None:intergenic |
| AGATTATTATTCAGGATTGC+TGG | 0.374839 | 4_3:+26032747 | Msa0636180:CDS |
| TTGGTTTAAAGGCTTTGATT+TGG | 0.375505 | 4_3:-26031712 | None:intergenic |
| TAAGAAGATTGATTTAAATC+CGG | 0.378056 | 4_3:+26032607 | Msa0636180:CDS |
| CTACTCTCAAAGAATTGAAA+TGG | 0.378081 | 4_3:+26033759 | Msa0636180:CDS |
| AAATCAACATGATTAAGATT+AGG | 0.378177 | 4_3:-26032005 | None:intergenic |
| TTGTGAAGCTTGAGCTTTGT+GGG | 0.380521 | 4_3:+26032435 | Msa0636180:CDS |
| ATTCTGCGTCGTCGCCGAAT+TGG | 0.380535 | 4_3:+26032102 | Msa0636180:CDS |
| ACAGAGAAATGTGAATTCAT+TGG | 0.382696 | 4_3:+26031884 | Msa0636180:CDS |
| CCGGGACTCGATGAGTATTT+GGG | 0.385828 | 4_3:+26032626 | Msa0636180:CDS |
| TTCAATGGCGAATTAGGGTT+AGG | 0.387616 | 4_3:-26031648 | None:intergenic |
| CTAATCCCCACAAGACTTGA+TGG | 0.388509 | 4_3:-26033806 | None:intergenic |
| TTGAGAAGGGTTCAAGTGAT+TGG | 0.391585 | 4_3:+26032203 | Msa0636180:CDS |
| GTGTTCTACATTGCAGGAAC+TGG | 0.392407 | 4_3:+26032262 | Msa0636180:CDS |
| TTGATGGGATTAAGGCTATT+GGG | 0.396993 | 4_3:+26032471 | Msa0636180:CDS |
| TTTCTGTTTGCAGGGTTGCT+AGG | 0.398905 | 4_3:+26032723 | Msa0636180:CDS |
| TTTGCAAAAGTGTCAGTTGC+GGG | 0.408350 | 4_3:+26032676 | Msa0636180:CDS |
| ATTGCTAACAACAGAAGGTT+TGG | 0.408544 | 4_3:+26033634 | Msa0636180:CDS |
| TGAAGAGTGTTCTACATTGC+AGG | 0.408554 | 4_3:+26032256 | Msa0636180:CDS |
| GATTGCTGGGGATTCGATAA+TGG | 0.409744 | 4_3:+26032761 | Msa0636180:CDS |
| TTCTGTTTGCAGGGTTGCTA+GGG | 0.414617 | 4_3:+26032724 | Msa0636180:CDS |
| GAATTTCATCAGATAACATA+AGG | 0.419470 | 4_3:-26031830 | None:intergenic |
| GTTGAATTTACAAGGTCGTT+TGG | 0.420107 | 4_3:+26031920 | Msa0636180:CDS |
| CTTGTGAAGCTTGAGCTTTG+TGG | 0.422001 | 4_3:+26032434 | Msa0636180:CDS |
| AAGAAGATTGATTTAAATCC+GGG | 0.425761 | 4_3:+26032608 | Msa0636180:CDS |
| CTTCTTCCATCAAGTCTTGT+GGG | 0.431093 | 4_3:+26033800 | Msa0636180:CDS |
| TTAGCAAGTTCCAGAGCAAC+AGG | 0.431899 | 4_3:-26034379 | None:intergenic |
| CGTGTTCCTAGTTTCTTCAA+TGG | 0.432750 | 4_3:-26031663 | None:intergenic |
| TCCTCACAATTAAACCAATT+CGG | 0.434096 | 4_3:-26032116 | None:intergenic |
| AGTGATTGGTGCTAGTGAAA+TGG | 0.438381 | 4_3:+26032217 | Msa0636180:CDS |
| GTCGTTTGGTTCGATCGATT+CGG | 0.438610 | 4_3:+26031934 | Msa0636180:CDS |
| GGATTCGATAATGGCATGTT+CGG | 0.451374 | 4_3:+26032770 | Msa0636180:CDS |
| CCATTATCAATAACCTCAAC+AGG | 0.455104 | 4_3:-26032149 | None:intergenic |
| TGGAGTCTGTAATACATTCA+TGG | 0.461431 | 4_3:+26033654 | Msa0636180:CDS |
| AGGGGACCCAATTTCCACTA+TGG | 0.462887 | 4_3:-26034289 | None:intergenic |
| GATCAATGATTGAGAAATTG+GGG | 0.464246 | 4_3:-26031803 | None:intergenic |
| GATTATTATTCAGGATTGCT+GGG | 0.464395 | 4_3:+26032748 | Msa0636180:CDS |
| AGTTCACCATAGTGGAAATT+GGG | 0.467391 | 4_3:+26034283 | Msa0636180:three_prime_UTR |
| GCGGGATAAGAAGAGCGTTT+CGG | 0.467821 | 4_3:+26032694 | Msa0636180:CDS |
| ACCTTTAGCTTAGATGTTGG+CGG | 0.468048 | 4_3:+26034176 | Msa0636180:three_prime_UTR |
| GTAAATAAGGTTGCAAGTGA+AGG | 0.475213 | 4_3:-26033737 | None:intergenic |
| CTATAGCGTTGTAATGTAGT+AGG | 0.478233 | 4_3:-26033927 | None:intergenic |
| GTGATTGGTGCTAGTGAAAT+GGG | 0.480614 | 4_3:+26032218 | Msa0636180:CDS |
| GCTTACATGAGACTACTCTA+AGG | 0.483154 | 4_3:-26033691 | None:intergenic |
| TTCCTTATTAGTCTGACAAA+AGG | 0.488534 | 4_3:-26034224 | None:intergenic |
| CCCAAATACTCATCGAGTCC+CGG | 0.489216 | 4_3:-26032626 | None:intergenic |
| ATCATGTTGATTTGATTCAT+GGG | 0.489312 | 4_3:+26032015 | Msa0636180:CDS |
| TCAATGGCGAATTAGGGTTA+GGG | 0.492554 | 4_3:-26031647 | None:intergenic |
| AACCATGTTACCGTTGTCTG+TGG | 0.495334 | 4_3:+26034355 | Msa0636180:three_prime_UTR |
| ATTCATTGGTTTGTAAAAGA+TGG | 0.495844 | 4_3:+26031898 | Msa0636180:CDS |
| AGTTGACATTGTGTGATCAT+AGG | 0.504164 | 4_3:+26032516 | Msa0636180:CDS |
| AAAAGATGGTTGAATTTACA+AGG | 0.506141 | 4_3:+26031912 | Msa0636180:CDS |
| GGAGAATATGCTTCCTGTTG+AGG | 0.516115 | 4_3:+26032136 | Msa0636180:CDS |
| TTCTTCCATCAAGTCTTGTG+GGG | 0.518577 | 4_3:+26033801 | Msa0636180:CDS |
| AAATTGGTTGGGAATGTTGA+GGG | 0.518791 | 4_3:+26032350 | Msa0636180:CDS |
| GCCGAATTGGTTTAATTGTG+AGG | 0.522553 | 4_3:+26032115 | Msa0636180:CDS |
| TTTACCTTTAGCTTAGATGT+TGG | 0.523268 | 4_3:+26034173 | Msa0636180:three_prime_UTR |
| ACTTCTTCCATCAAGTCTTG+TGG | 0.526263 | 4_3:+26033799 | Msa0636180:CDS |
| AATTTCATCAGATAACATAA+GGG | 0.529077 | 4_3:-26031829 | None:intergenic |
| CTTGAGCTTTGTGGGTGTGA+AGG | 0.531367 | 4_3:+26032443 | Msa0636180:CDS |
| ATGGTTGTCCTAATTTGAGA+AGG | 0.537606 | 4_3:+26032189 | Msa0636180:CDS |
| ACCGCCAACATCTAAGCTAA+AGG | 0.537822 | 4_3:-26034177 | None:intergenic |
| ATCATAGGATGGATGATGGA+TGG | 0.540837 | 4_3:+26032531 | Msa0636180:CDS |
| TTGTCTAATAGCAACTATAG+TGG | 0.541113 | 4_3:-26034049 | None:intergenic |
| TGGGAAGTGTTGTCAGATGT+TGG | 0.541636 | 4_3:+26032490 | Msa0636180:CDS |
| TTGAGCTTTGTGGGTGTGAA+GGG | 0.551393 | 4_3:+26032444 | Msa0636180:CDS |
| TGCTCATTGCTAACAACAGA+AGG | 0.553995 | 4_3:+26033629 | Msa0636180:CDS |
| AAATGCAGCCTCTCAAGTGC+AGG | 0.555404 | 4_3:-26032656 | None:intergenic |
| GTTCTTGTCCTGCACTTGAG+AGG | 0.559400 | 4_3:+26032648 | Msa0636180:CDS |
| GGGATTAGTATGGGAAAGAA+AGG | 0.559970 | 4_3:+26033821 | Msa0636180:CDS |
| AGTCTTGTGGGGATTAGTAT+GGG | 0.562954 | 4_3:+26033812 | Msa0636180:CDS |
| TAAGGGGAATTGCGGCGTGT+GGG | 0.566198 | 4_3:+26032312 | Msa0636180:CDS |
| TTACGCCCAGTTCACCATAG+TGG | 0.569574 | 4_3:+26034275 | Msa0636180:three_prime_UTR |
| TGGTTGTCCTAATTTGAGAA+GGG | 0.574459 | 4_3:+26032190 | Msa0636180:CDS |
| TTAAGGGGAATTGCGGCGTG+TGG | 0.576354 | 4_3:+26032311 | Msa0636180:CDS |
| TGTGATCATAGGATGGATGA+TGG | 0.581367 | 4_3:+26032527 | Msa0636180:CDS |
| GTGAGAATTTGAAGACGTTG+AGG | 0.581735 | 4_3:+26032573 | Msa0636180:CDS |
| AATTCGCCATTGAAGAAACT+AGG | 0.585056 | 4_3:+26031657 | Msa0636180:CDS |
| GTCTGTAATACATTCATGGA+AGG | 0.593439 | 4_3:+26033658 | Msa0636180:CDS |
| ACCATGTTACCGTTGTCTGT+GGG | 0.595317 | 4_3:+26034356 | Msa0636180:three_prime_UTR |
| GCCCACAGACAACGGTAACA+TGG | 0.600946 | 4_3:-26034357 | None:intergenic |
| TTTAGCTTAGATGTTGGCGG+TGG | 0.604261 | 4_3:+26034179 | Msa0636180:three_prime_UTR |
| GAAATTGGTTGGGAATGTTG+AGG | 0.606598 | 4_3:+26032349 | Msa0636180:CDS |
| AATTTCCACTATGGTGAACT+GGG | 0.607607 | 4_3:-26034280 | None:intergenic |
| ATTAGTATGGGAAAGAAAGG+TGG | 0.613088 | 4_3:+26033824 | Msa0636180:CDS |
| CTCTCAAAGAATTGAAATGG+AGG | 0.618145 | 4_3:+26033762 | Msa0636180:CDS |
| TAGGATGGATGATGGATGGA+TGG | 0.622771 | 4_3:+26032535 | Msa0636180:CDS |
| ATTTGCAAAAGTGTCAGTTG+CGG | 0.627786 | 4_3:+26032675 | Msa0636180:CDS |
| TATAAAGAAAATGCAACAAG+GGG | 0.630964 | 4_3:-26034307 | None:intergenic |
| AGCAACAGGCCCACAGACAA+CGG | 0.634053 | 4_3:-26034365 | None:intergenic |
| GTATAAAGAAAATGCAACAA+GGG | 0.634900 | 4_3:-26034308 | None:intergenic |
| TGTATAAAGAAAATGCAACA+AGG | 0.637047 | 4_3:-26034309 | None:intergenic |
| GACATTGTGTGATCATAGGA+TGG | 0.643629 | 4_3:+26032520 | Msa0636180:CDS |
| ATTATTATTCAGGATTGCTG+GGG | 0.650156 | 4_3:+26032749 | Msa0636180:CDS |
| CATTGAAGAAACTAGGAACA+CGG | 0.661833 | 4_3:+26031664 | Msa0636180:CDS |
| GAAGTGTTGTCAGATGTTGG+AGG | 0.680445 | 4_3:+26032493 | Msa0636180:CDS |
| TATAGCGTATTACGGAACAA+TGG | 0.706718 | 4_3:+26033987 | Msa0636180:three_prime_UTR |
| ACTATAACGCTATATCATAG+CGG | 0.739086 | 4_3:-26034025 | None:intergenic |
| TAGTTGCTATTAGACAACAA+TGG | 0.761255 | 4_3:+26034055 | Msa0636180:three_prime_UTR |
| TGAAGAAACTAGGAACACGG+TGG | 0.807458 | 4_3:+26031667 | Msa0636180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTCTGAAAAATTATA+TGG | + | chr4_3:26033203-26033222 | Msa0636180:intron | 15.0% |
| !! | TAAAAAAGTGATTATTACAT+TGG | - | chr4_3:26034157-26034176 | None:intergenic | 15.0% |
| !!! | ATACTTTTGTATAAAATGTA+TGG | + | chr4_3:26034407-26034426 | Msa0636180:three_prime_UTR | 15.0% |
| !! | AATTTCATCAGATAACATAA+GGG | - | chr4_3:26031832-26031851 | None:intergenic | 20.0% |
| !! | AATCAACATGATTAAGATTA+GGG | - | chr4_3:26032007-26032026 | None:intergenic | 20.0% |
| !! | AAATCAACATGATTAAGATT+AGG | - | chr4_3:26032008-26032027 | None:intergenic | 20.0% |
| !!! | TAAGAAGATTGATTTAAATC+CGG | + | chr4_3:26032607-26032626 | Msa0636180:CDS | 20.0% |
| !! | CTCTAATCATATATGTATAT+TGG | + | chr4_3:26033250-26033269 | Msa0636180:intron | 20.0% |
| !!! | TAATTTTTTCTTTGTTGGAA+TGG | + | chr4_3:26033314-26033333 | Msa0636180:intron | 20.0% |
| !!! | TTTTACTATATAGCGTATTA+CGG | + | chr4_3:26033979-26033998 | Msa0636180:three_prime_UTR | 20.0% |
| !!! | TTTTACATAATTACATTGCT+AGG | - | chr4_3:26034254-26034273 | None:intergenic | 20.0% |
| ! | TGATCAATGATTGAGAAATT+GGG | - | chr4_3:26031807-26031826 | None:intergenic | 25.0% |
| ! | TTGATCAATGATTGAGAAAT+TGG | - | chr4_3:26031808-26031827 | None:intergenic | 25.0% |
| ! | GAATTTCATCAGATAACATA+AGG | - | chr4_3:26031833-26031852 | None:intergenic | 25.0% |
| !!! | ATTCATTGGTTTGTAAAAGA+TGG | + | chr4_3:26031898-26031917 | Msa0636180:CDS | 25.0% |
| ! | AAAAGATGGTTGAATTTACA+AGG | + | chr4_3:26031912-26031931 | Msa0636180:CDS | 25.0% |
| !! | TATCTGGTAGATTGATTTAT+AGG | + | chr4_3:26031979-26031998 | Msa0636180:CDS | 25.0% |
| !!! | AATCATGTTGATTTGATTCA+TGG | + | chr4_3:26032014-26032033 | Msa0636180:CDS | 25.0% |
| !!! | ATCATGTTGATTTGATTCAT+GGG | + | chr4_3:26032015-26032034 | Msa0636180:CDS | 25.0% |
| !!! | AGTGTAGTGATAATGTTTTA+AGG | + | chr4_3:26032294-26032313 | Msa0636180:CDS | 25.0% |
| !!! | GTGTAGTGATAATGTTTTAA+GGG | + | chr4_3:26032295-26032314 | Msa0636180:CDS | 25.0% |
| !!! | TGTAGTGATAATGTTTTAAG+GGG | + | chr4_3:26032296-26032315 | Msa0636180:CDS | 25.0% |
| !!! | GAATTTGCAGATTTTGAAAT+TGG | + | chr4_3:26032334-26032353 | Msa0636180:CDS | 25.0% |
| !! | AAGAAGATTGATTTAAATCC+GGG | + | chr4_3:26032608-26032627 | Msa0636180:CDS | 25.0% |
| !!! | ACTATACTGTCTAGAATTTT+TGG | + | chr4_3:26032854-26032873 | Msa0636180:intron | 25.0% |
| ! | CACATTAGAATTTGAATCAA+TGG | - | chr4_3:26032913-26032932 | None:intergenic | 25.0% |
| !!! | TCATATTTTAACTTACCTCT+CGG | + | chr4_3:26033033-26033052 | Msa0636180:intron | 25.0% |
| ! | ATATATGTATATTGGCAATC+TGG | + | chr4_3:26033258-26033277 | Msa0636180:intron | 25.0% |
| !!! | GCTAGTAATTTTTTCTTTGT+TGG | + | chr4_3:26033309-26033328 | Msa0636180:intron | 25.0% |
| !!! | AATTTTGATTTTACACCTCT+TGG | + | chr4_3:26033361-26033380 | Msa0636180:intron | 25.0% |
| ! | ACAATATTGGAATAAGGAAA+AGG | - | chr4_3:26033411-26033430 | None:intergenic | 25.0% |
| ! | CTTGTTACAATATTGGAATA+AGG | - | chr4_3:26033417-26033436 | None:intergenic | 25.0% |
| !!! | CTATCAACTTGTTACAATAT+TGG | - | chr4_3:26033424-26033443 | None:intergenic | 25.0% |
| ! | GTAAAATTGCTTTACTTAGA+AGG | + | chr4_3:26033605-26033624 | Msa0636180:CDS | 25.0% |
| !! | TTCTTTGAGAGTAGTAAATA+AGG | - | chr4_3:26033753-26033772 | None:intergenic | 25.0% |
| !!! | AAGGTGGCAAATTTTTTAAA+AGG | + | chr4_3:26033840-26033859 | Msa0636180:CDS | 25.0% |
| ! | ATAGTTGATCACAAAAATAG+CGG | + | chr4_3:26033893-26033912 | Msa0636180:three_prime_UTR | 25.0% |
| !!! | TAGTAAAAAGTGTTGTCAAA+TGG | - | chr4_3:26033967-26033986 | None:intergenic | 25.0% |
| !! | AGTAGTTTTCTAATAAACCT+AGG | + | chr4_3:26034079-26034098 | Msa0636180:three_prime_UTR | 25.0% |
| ! | TATAAAGAAAATGCAACAAG+GGG | - | chr4_3:26034310-26034329 | None:intergenic | 25.0% |
| ! | GTATAAAGAAAATGCAACAA+GGG | - | chr4_3:26034311-26034330 | None:intergenic | 25.0% |
| ! | TGTATAAAGAAAATGCAACA+AGG | - | chr4_3:26034312-26034331 | None:intergenic | 25.0% |
| !!! | TCGTTTTTGTGTTGTTTTTG+CGG | - | chr4_3:26031575-26031594 | None:intergenic | 30.0% |
| !!! | AAAAACGATGTCGTTTTCAA+CGG | + | chr4_3:26031587-26031606 | Msa0636180:exon | 30.0% |
| ! | TTGGTTTAAAGGCTTTGATT+TGG | - | chr4_3:26031715-26031734 | None:intergenic | 30.0% |
| ! | GCAACAACTATTTGGTTTAA+AGG | - | chr4_3:26031726-26031745 | None:intergenic | 30.0% |
| !! | AAATTAGGGTTTGATTTTCG+AGG | - | chr4_3:26031783-26031802 | None:intergenic | 30.0% |
| TTGAGAAATTGGGGAAATTA+GGG | - | chr4_3:26031797-26031816 | None:intergenic | 30.0% | |
| ATTGAGAAATTGGGGAAATT+AGG | - | chr4_3:26031798-26031817 | None:intergenic | 30.0% | |
| GATCAATGATTGAGAAATTG+GGG | - | chr4_3:26031806-26031825 | None:intergenic | 30.0% | |
| ACAGAGAAATGTGAATTCAT+TGG | + | chr4_3:26031884-26031903 | Msa0636180:CDS | 30.0% | |
| !!! | GATTGGAACTTTGTTTTATC+TGG | + | chr4_3:26031963-26031982 | Msa0636180:CDS | 30.0% |
| TCCTCACAATTAAACCAATT+CGG | - | chr4_3:26032119-26032138 | None:intergenic | 30.0% | |
| ! | CTGTTGAGGTTATTGATAAT+GGG | + | chr4_3:26032150-26032169 | Msa0636180:CDS | 30.0% |
| !! | TGAAATGGGTTTGTTAAGTT+TGG | + | chr4_3:26032232-26032251 | Msa0636180:CDS | 30.0% |
| !!! | TAATGTTTTAAGGGGAATTG+CGG | + | chr4_3:26032304-26032323 | Msa0636180:CDS | 30.0% |
| !!! | TTGCAGATTTTGAAATTGGT+TGG | + | chr4_3:26032338-26032357 | Msa0636180:CDS | 30.0% |
| !!! | TGCAGATTTTGAAATTGGTT+GGG | + | chr4_3:26032339-26032358 | Msa0636180:CDS | 30.0% |
| !!! | ATTTTATGGTTCGGTTGTTT+CGG | + | chr4_3:26032373-26032392 | Msa0636180:CDS | 30.0% |
| AGATTATTATTCAGGATTGC+TGG | + | chr4_3:26032747-26032766 | Msa0636180:CDS | 30.0% | |
| GATTATTATTCAGGATTGCT+GGG | + | chr4_3:26032748-26032767 | Msa0636180:CDS | 30.0% | |
| ATTATTATTCAGGATTGCTG+GGG | + | chr4_3:26032749-26032768 | Msa0636180:CDS | 30.0% | |
| TTTCCTGTTTGATTGACAAT+TGG | + | chr4_3:26032883-26032902 | Msa0636180:intron | 30.0% | |
| AACCAAATATATCGCTTCAA+TGG | - | chr4_3:26032973-26032992 | None:intergenic | 30.0% | |
| ATTGAAGCGATATATTTGGT+TGG | + | chr4_3:26032972-26032991 | Msa0636180:intron | 30.0% | |
| GATTAGAGACATTTCAACAT+TGG | - | chr4_3:26033238-26033257 | None:intergenic | 30.0% | |
| !!! | TTTTGAGTCTTGTTTGAAGT+TGG | + | chr4_3:26033494-26033513 | Msa0636180:intron | 30.0% |
| !!! | ATGGTTTTGTCGACTAAAAT+TGG | - | chr4_3:26033525-26033544 | None:intergenic | 30.0% |
| TGATTACAGTCACTTCTATA+TGG | - | chr4_3:26033544-26033563 | None:intergenic | 30.0% | |
| !! | ATTGATTGCTGTTCTTTTTC+AGG | + | chr4_3:26033579-26033598 | Msa0636180:intron | 30.0% |
| CTACTCTCAAAGAATTGAAA+TGG | + | chr4_3:26033759-26033778 | Msa0636180:CDS | 30.0% | |
| ACTATAACGCTATATCATAG+CGG | - | chr4_3:26034028-26034047 | None:intergenic | 30.0% | |
| TTGTCTAATAGCAACTATAG+TGG | - | chr4_3:26034052-26034071 | None:intergenic | 30.0% | |
| ! | TAGTTGCTATTAGACAACAA+TGG | + | chr4_3:26034055-26034074 | Msa0636180:three_prime_UTR | 30.0% |
| ! | ACAGATTATTTTCACTGACA+TGG | + | chr4_3:26034115-26034134 | Msa0636180:three_prime_UTR | 30.0% |
| ! | TTTACCTTTAGCTTAGATGT+TGG | + | chr4_3:26034173-26034192 | Msa0636180:three_prime_UTR | 30.0% |
| ! | TTCCTTTTGTCAGACTAATA+AGG | + | chr4_3:26034222-26034241 | Msa0636180:three_prime_UTR | 30.0% |
| ! | TTCCTTATTAGTCTGACAAA+AGG | - | chr4_3:26034227-26034246 | None:intergenic | 30.0% |
| !!! | TTTTTGTGTTGTTTTTGCGG+TGG | - | chr4_3:26031572-26031591 | None:intergenic | 35.0% |
| GTTTCTTCAATGGCGAATTA+GGG | - | chr4_3:26031656-26031675 | None:intergenic | 35.0% | |
| AGTTTCTTCAATGGCGAATT+AGG | - | chr4_3:26031657-26031676 | None:intergenic | 35.0% | |
| AATTCGCCATTGAAGAAACT+AGG | + | chr4_3:26031657-26031676 | Msa0636180:CDS | 35.0% | |
| CATTGAAGAAACTAGGAACA+CGG | + | chr4_3:26031664-26031683 | Msa0636180:CDS | 35.0% | |
| TTCACATTTCTCTGTGAATC+TGG | - | chr4_3:26031879-26031898 | None:intergenic | 35.0% | |
| GTTGAATTTACAAGGTCGTT+TGG | + | chr4_3:26031920-26031939 | Msa0636180:CDS | 35.0% | |
| CCATTATCAATAACCTCAAC+AGG | - | chr4_3:26032152-26032171 | None:intergenic | 35.0% | |
| CCTGTTGAGGTTATTGATAA+TGG | + | chr4_3:26032149-26032168 | Msa0636180:CDS | 35.0% | |
| ATGGTTGTCCTAATTTGAGA+AGG | + | chr4_3:26032189-26032208 | Msa0636180:CDS | 35.0% | |
| TGGTTGTCCTAATTTGAGAA+GGG | + | chr4_3:26032190-26032209 | Msa0636180:CDS | 35.0% | |
| ACTTGAACCCTTCTCAAATT+AGG | - | chr4_3:26032200-26032219 | None:intergenic | 35.0% | |
| AAATTGGTTGGGAATGTTGA+GGG | + | chr4_3:26032350-26032369 | Msa0636180:CDS | 35.0% | |
| ! | TGTTGAGGGATTTTATGGTT+CGG | + | chr4_3:26032364-26032383 | Msa0636180:CDS | 35.0% |
| !!! | GTTTGACGATTTTAGCTCAA+GGG | + | chr4_3:26032402-26032421 | Msa0636180:CDS | 35.0% |
| TTTGATGGGATTAAGGCTAT+TGG | + | chr4_3:26032470-26032489 | Msa0636180:CDS | 35.0% | |
| TTGATGGGATTAAGGCTATT+GGG | + | chr4_3:26032471-26032490 | Msa0636180:CDS | 35.0% | |
| AGTTGACATTGTGTGATCAT+AGG | + | chr4_3:26032516-26032535 | Msa0636180:CDS | 35.0% | |
| !! | ATTTGCAAAAGTGTCAGTTG+CGG | + | chr4_3:26032675-26032694 | Msa0636180:CDS | 35.0% |
| TGCTAGGGAGATTATTATTC+AGG | + | chr4_3:26032739-26032758 | Msa0636180:CDS | 35.0% | |
| TTGCCAATTGTCAATCAAAC+AGG | - | chr4_3:26032889-26032908 | None:intergenic | 35.0% | |
| CTCCATTGAAGCGATATATT+TGG | + | chr4_3:26032968-26032987 | Msa0636180:intron | 35.0% | |
| ATTCAACACACATTATCCCA+GGG | - | chr4_3:26033189-26033208 | None:intergenic | 35.0% | |
| AATTCAACACACATTATCCC+AGG | - | chr4_3:26033190-26033209 | None:intergenic | 35.0% | |
| ATTGCTAACAACAGAAGGTT+TGG | + | chr4_3:26033634-26033653 | Msa0636180:CDS | 35.0% | |
| TGGAGTCTGTAATACATTCA+TGG | + | chr4_3:26033654-26033673 | Msa0636180:CDS | 35.0% | |
| GTCTGTAATACATTCATGGA+AGG | + | chr4_3:26033658-26033677 | Msa0636180:CDS | 35.0% | |
| GTAAATAAGGTTGCAAGTGA+AGG | - | chr4_3:26033740-26033759 | None:intergenic | 35.0% | |
| CTCTCAAAGAATTGAAATGG+AGG | + | chr4_3:26033762-26033781 | Msa0636180:CDS | 35.0% | |
| ATTAGTATGGGAAAGAAAGG+TGG | + | chr4_3:26033824-26033843 | Msa0636180:CDS | 35.0% | |
| CTATAGCGTTGTAATGTAGT+AGG | - | chr4_3:26033930-26033949 | None:intergenic | 35.0% | |
| TATAGCGTATTACGGAACAA+TGG | + | chr4_3:26033987-26034006 | Msa0636180:three_prime_UTR | 35.0% | |
| ATTACGGAACAATGGTGATT+TGG | + | chr4_3:26033995-26034014 | Msa0636180:three_prime_UTR | 35.0% | |
| AATTTCCACTATGGTGAACT+GGG | - | chr4_3:26034283-26034302 | None:intergenic | 35.0% | |
| ! | AGTTCACCATAGTGGAAATT+GGG | + | chr4_3:26034283-26034302 | Msa0636180:three_prime_UTR | 35.0% |
| TCAATGGCGAATTAGGGTTA+GGG | - | chr4_3:26031650-26031669 | None:intergenic | 40.0% | |
| TTCAATGGCGAATTAGGGTT+AGG | - | chr4_3:26031651-26031670 | None:intergenic | 40.0% | |
| CGTGTTCCTAGTTTCTTCAA+TGG | - | chr4_3:26031666-26031685 | None:intergenic | 40.0% | |
| TTGCAGCAGCAACAACTATT+TGG | - | chr4_3:26031734-26031753 | None:intergenic | 40.0% | |
| ! | GCCGAATTGGTTTAATTGTG+AGG | + | chr4_3:26032115-26032134 | Msa0636180:CDS | 40.0% |
| !! | GGGTTAGTTGCTTTAGCTAA+TGG | + | chr4_3:26032170-26032189 | Msa0636180:CDS | 40.0% |
| TTGAGAAGGGTTCAAGTGAT+TGG | + | chr4_3:26032203-26032222 | Msa0636180:CDS | 40.0% | |
| !! | AGTGATTGGTGCTAGTGAAA+TGG | + | chr4_3:26032217-26032236 | Msa0636180:CDS | 40.0% |
| !! | GTGATTGGTGCTAGTGAAAT+GGG | + | chr4_3:26032218-26032237 | Msa0636180:CDS | 40.0% |
| !! | TGAAGAGTGTTCTACATTGC+AGG | + | chr4_3:26032256-26032275 | Msa0636180:CDS | 40.0% |
| GAAATTGGTTGGGAATGTTG+AGG | + | chr4_3:26032349-26032368 | Msa0636180:CDS | 40.0% | |
| ! | GGGAATGTTGAGGGATTTTA+TGG | + | chr4_3:26032359-26032378 | Msa0636180:CDS | 40.0% |
| !!! | GGTTTGACGATTTTAGCTCA+AGG | + | chr4_3:26032401-26032420 | Msa0636180:CDS | 40.0% |
| !!! | TTTTAGCTCAAGGGTGTAAG+AGG | + | chr4_3:26032411-26032430 | Msa0636180:CDS | 40.0% |
| ! | TTGTGAAGCTTGAGCTTTGT+GGG | + | chr4_3:26032435-26032454 | Msa0636180:CDS | 40.0% |
| !! | AGGGAGTTTTGATGGGATTA+AGG | + | chr4_3:26032463-26032482 | Msa0636180:CDS | 40.0% |
| GACATTGTGTGATCATAGGA+TGG | + | chr4_3:26032520-26032539 | Msa0636180:CDS | 40.0% | |
| TGTGATCATAGGATGGATGA+TGG | + | chr4_3:26032527-26032546 | Msa0636180:CDS | 40.0% | |
| !! | ATCATAGGATGGATGATGGA+TGG | + | chr4_3:26032531-26032550 | Msa0636180:CDS | 40.0% |
| GTGAGAATTTGAAGACGTTG+AGG | + | chr4_3:26032573-26032592 | Msa0636180:CDS | 40.0% | |
| !! | TTTGCAAAAGTGTCAGTTGC+GGG | + | chr4_3:26032676-26032695 | Msa0636180:CDS | 40.0% |
| !!! | GGCTTTGTTTTCTGTTTGCA+GGG | + | chr4_3:26032715-26032734 | Msa0636180:CDS | 40.0% |
| ! | GGATTCGATAATGGCATGTT+CGG | + | chr4_3:26032770-26032789 | Msa0636180:CDS | 40.0% |
| TTGCAACTGTTTGCAGGTAA+TGG | + | chr4_3:26032795-26032814 | Msa0636180:intron | 40.0% | |
| CACAAATTAGTCCATCACCA+GGG | - | chr4_3:26033012-26033031 | None:intergenic | 40.0% | |
| ! | CTAATTTGTGTTATGCCGAG+AGG | - | chr4_3:26033051-26033070 | None:intergenic | 40.0% |
| ! | ATATTGGCAATCTGGTCTTC+AGG | + | chr4_3:26033266-26033285 | Msa0636180:intron | 40.0% |
| TGTTCTAGTCTACAACCAAG+AGG | - | chr4_3:26033379-26033398 | None:intergenic | 40.0% | |
| CTTGGTTGTAGACTAGAACA+AGG | + | chr4_3:26033379-26033398 | Msa0636180:intron | 40.0% | |
| TGCTCATTGCTAACAACAGA+AGG | + | chr4_3:26033629-26033648 | Msa0636180:CDS | 40.0% | |
| GCTTACATGAGACTACTCTA+AGG | - | chr4_3:26033694-26033713 | None:intergenic | 40.0% | |
| GGAAGAAGTGATTTCGTATC+TGG | - | chr4_3:26033788-26033807 | None:intergenic | 40.0% | |
| ACTTCTTCCATCAAGTCTTG+TGG | + | chr4_3:26033799-26033818 | Msa0636180:CDS | 40.0% | |
| ! | CTTCTTCCATCAAGTCTTGT+GGG | + | chr4_3:26033800-26033819 | Msa0636180:CDS | 40.0% |
| ! | TTCTTCCATCAAGTCTTGTG+GGG | + | chr4_3:26033801-26033820 | Msa0636180:CDS | 40.0% |
| ! | AAGTCTTGTGGGGATTAGTA+TGG | + | chr4_3:26033811-26033830 | Msa0636180:CDS | 40.0% |
| ! | AGTCTTGTGGGGATTAGTAT+GGG | + | chr4_3:26033812-26033831 | Msa0636180:CDS | 40.0% |
| ! | GGGATTAGTATGGGAAAGAA+AGG | + | chr4_3:26033821-26033840 | Msa0636180:CDS | 40.0% |
| !! | CTGTTTTTCAGACAATGCCT+AGG | - | chr4_3:26034099-26034118 | None:intergenic | 40.0% |
| ! | ACCTTTAGCTTAGATGTTGG+CGG | + | chr4_3:26034176-26034195 | Msa0636180:three_prime_UTR | 40.0% |
| CAATTTCCACTATGGTGAAC+TGG | - | chr4_3:26034284-26034303 | None:intergenic | 40.0% | |
| ! | CAGTTCACCATAGTGGAAAT+TGG | + | chr4_3:26034282-26034301 | Msa0636180:three_prime_UTR | 40.0% |
| !!! | TTGTGTTGTTTTTGCGGTGG+TGG | - | chr4_3:26031569-26031588 | None:intergenic | 45.0% |
| GCGAATTAGGGTTAGGGTTA+GGG | - | chr4_3:26031644-26031663 | None:intergenic | 45.0% | |
| TGAAGAAACTAGGAACACGG+TGG | + | chr4_3:26031667-26031686 | Msa0636180:CDS | 45.0% | |
| GAACACGGTGGTCTGATTTA+TGG | + | chr4_3:26031679-26031698 | Msa0636180:CDS | 45.0% | |
| ! | GTCGTTTGGTTCGATCGATT+CGG | + | chr4_3:26031934-26031953 | Msa0636180:CDS | 45.0% |
| !! | GATCGATTCGGATTCGTGAT+TGG | + | chr4_3:26031946-26031965 | Msa0636180:CDS | 45.0% |
| GGAGAATATGCTTCCTGTTG+AGG | + | chr4_3:26032136-26032155 | Msa0636180:CDS | 45.0% | |
| GTGTTCTACATTGCAGGAAC+TGG | + | chr4_3:26032262-26032281 | Msa0636180:CDS | 45.0% | |
| ! | GGTTCGGTTGTTTCGGATAT+TGG | + | chr4_3:26032380-26032399 | Msa0636180:CDS | 45.0% |
| CTTGTGAAGCTTGAGCTTTG+TGG | + | chr4_3:26032434-26032453 | Msa0636180:CDS | 45.0% | |
| ! | TTGAGCTTTGTGGGTGTGAA+GGG | + | chr4_3:26032444-26032463 | Msa0636180:CDS | 45.0% |
| !! | GGTGTGAAGGGAGTTTTGAT+GGG | + | chr4_3:26032456-26032475 | Msa0636180:CDS | 45.0% |
| !! | TGGGAAGTGTTGTCAGATGT+TGG | + | chr4_3:26032490-26032509 | Msa0636180:CDS | 45.0% |
| !! | GAAGTGTTGTCAGATGTTGG+AGG | + | chr4_3:26032493-26032512 | Msa0636180:CDS | 45.0% |
| !! | TAGGATGGATGATGGATGGA+TGG | + | chr4_3:26032535-26032554 | Msa0636180:CDS | 45.0% |
| !!! | CGGCTTTGTTTTCTGTTTGC+AGG | + | chr4_3:26032714-26032733 | Msa0636180:CDS | 45.0% |
| TTTCTGTTTGCAGGGTTGCT+AGG | + | chr4_3:26032723-26032742 | Msa0636180:CDS | 45.0% | |
| TTCTGTTTGCAGGGTTGCTA+GGG | + | chr4_3:26032724-26032743 | Msa0636180:CDS | 45.0% | |
| GATTGCTGGGGATTCGATAA+TGG | + | chr4_3:26032761-26032780 | Msa0636180:CDS | 45.0% | |
| AACTAGCGCTCAACACATCA+TGG | - | chr4_3:26032939-26032958 | None:intergenic | 45.0% | |
| CCACAAATTAGTCCATCACC+AGG | - | chr4_3:26033013-26033032 | None:intergenic | 45.0% | |
| !! | CCTGGTGATGGACTAATTTG+TGG | + | chr4_3:26033010-26033029 | Msa0636180:intron | 45.0% |
| CACACATTATCCCAGGGAAA+GGG | - | chr4_3:26033183-26033202 | None:intergenic | 45.0% | |
| ACACACATTATCCCAGGGAA+AGG | - | chr4_3:26033184-26033203 | None:intergenic | 45.0% | |
| CTAATCCCCACAAGACTTGA+TGG | - | chr4_3:26033809-26033828 | None:intergenic | 45.0% | |
| ACCGCCAACATCTAAGCTAA+AGG | - | chr4_3:26034180-26034199 | None:intergenic | 45.0% | |
| ! | TTTAGCTTAGATGTTGGCGG+TGG | + | chr4_3:26034179-26034198 | Msa0636180:three_prime_UTR | 45.0% |
| AACCATGTTACCGTTGTCTG+TGG | + | chr4_3:26034355-26034374 | Msa0636180:three_prime_UTR | 45.0% | |
| ACCATGTTACCGTTGTCTGT+GGG | + | chr4_3:26034356-26034375 | Msa0636180:three_prime_UTR | 45.0% | |
| TTAGCAAGTTCCAGAGCAAC+AGG | - | chr4_3:26034382-26034401 | None:intergenic | 45.0% | |
| GGCGAATTAGGGTTAGGGTT+AGG | - | chr4_3:26031645-26031664 | None:intergenic | 50.0% | |
| ! | CTTGAGCTTTGTGGGTGTGA+AGG | + | chr4_3:26032443-26032462 | Msa0636180:CDS | 50.0% |
| !! | GGGTGTGAAGGGAGTTTTGA+TGG | + | chr4_3:26032455-26032474 | Msa0636180:CDS | 50.0% |
| TCCGGGACTCGATGAGTATT+TGG | + | chr4_3:26032625-26032644 | Msa0636180:CDS | 50.0% | |
| CCCAAATACTCATCGAGTCC+CGG | - | chr4_3:26032629-26032648 | None:intergenic | 50.0% | |
| CCGGGACTCGATGAGTATTT+GGG | + | chr4_3:26032626-26032645 | Msa0636180:CDS | 50.0% | |
| GTTCTTGTCCTGCACTTGAG+AGG | + | chr4_3:26032648-26032667 | Msa0636180:CDS | 50.0% | |
| AAATGCAGCCTCTCAAGTGC+AGG | - | chr4_3:26032659-26032678 | None:intergenic | 50.0% | |
| !! | GCGGGATAAGAAGAGCGTTT+CGG | + | chr4_3:26032694-26032713 | Msa0636180:CDS | 50.0% |
| TCGGCTTTGCAACTGTTTGC+AGG | + | chr4_3:26032789-26032808 | Msa0636180:CDS | 50.0% | |
| ! | GCAATCTGGTCTTCAGGTCT+GGG | + | chr4_3:26033272-26033291 | Msa0636180:intron | 50.0% |
| ! | CAATCTGGTCTTCAGGTCTG+GGG | + | chr4_3:26033273-26033292 | Msa0636180:intron | 50.0% |
| ! | AATCTGGTCTTCAGGTCTGG+GGG | + | chr4_3:26033274-26033293 | Msa0636180:intron | 50.0% |
| TTACGCCCAGTTCACCATAG+TGG | + | chr4_3:26034275-26034294 | Msa0636180:three_prime_UTR | 50.0% | |
| AGGGGACCCAATTTCCACTA+TGG | - | chr4_3:26034292-26034311 | None:intergenic | 50.0% | |
| ATTCTGCGTCGTCGCCGAAT+TGG | + | chr4_3:26032102-26032121 | Msa0636180:CDS | 55.0% | |
| TTAAGGGGAATTGCGGCGTG+TGG | + | chr4_3:26032311-26032330 | Msa0636180:CDS | 55.0% | |
| TAAGGGGAATTGCGGCGTGT+GGG | + | chr4_3:26032312-26032331 | Msa0636180:CDS | 55.0% | |
| TGGTACCTGAGTTCGATCCC+TGG | + | chr4_3:26032992-26033011 | Msa0636180:intron | 55.0% | |
| CATCACCAGGGATCGAACTC+AGG | - | chr4_3:26033000-26033019 | None:intergenic | 55.0% | |
| CTGAGTTCGATCCCTGGTGA+TGG | + | chr4_3:26032998-26033017 | Msa0636180:intron | 55.0% | |
| ! | GGCAATCTGGTCTTCAGGTC+TGG | + | chr4_3:26033271-26033290 | Msa0636180:intron | 55.0% |
| GCCCACAGACAACGGTAACA+TGG | - | chr4_3:26034360-26034379 | None:intergenic | 55.0% | |
| AGCAACAGGCCCACAGACAA+CGG | - | chr4_3:26034368-26034387 | None:intergenic | 55.0% | |
| TGTCTGTGGGCCTGTTGCTC+TGG | + | chr4_3:26034369-26034388 | Msa0636180:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 26031514 | 26034438 | 26031514 | ID=Msa0636180;Name=Msa0636180 |
| chr4_3 | mRNA | 26031514 | 26034438 | 26031514 | ID=Msa0636180-mRNA-1;Parent=Msa0636180;Name=Msa0636180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=80|1|1|1|0.5|0.33|3|538|494 |
| chr4_3 | exon | 26031514 | 26032810 | 26031514 | ID=Msa0636180-mRNA-1:exon:6539;Parent=Msa0636180-mRNA-1 |
| chr4_3 | exon | 26033601 | 26033945 | 26033601 | ID=Msa0636180-mRNA-1:exon:6540;Parent=Msa0636180-mRNA-1 |
| chr4_3 | exon | 26033978 | 26034438 | 26033978 | ID=Msa0636180-mRNA-1:exon:6541;Parent=Msa0636180-mRNA-1 |
| chr4_3 | five_prime_UTR | 26031514 | 26031593 | 26031514 | ID=Msa0636180-mRNA-1:five_prime_utr;Parent=Msa0636180-mRNA-1 |
| chr4_3 | CDS | 26031594 | 26032810 | 26031594 | ID=Msa0636180-mRNA-1:cds;Parent=Msa0636180-mRNA-1 |
| chr4_3 | CDS | 26033601 | 26033868 | 26033601 | ID=Msa0636180-mRNA-1:cds;Parent=Msa0636180-mRNA-1 |
| chr4_3 | three_prime_UTR | 26033869 | 26033945 | 26033869 | ID=Msa0636180-mRNA-1:three_prime_utr;Parent=Msa0636180-mRNA-1 |
| chr4_3 | three_prime_UTR | 26033978 | 26034438 | 26033978 | ID=Msa0636180-mRNA-1:three_prime_utr;Parent=Msa0636180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
