AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1139810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139810 MtrunA17_Chr7g0220871 76.389 288 14 2 1 234 1 288 2.05e-149 418
Msa1139810 MtrunA17_Chr6g0457141 53.710 283 71 6 9 234 11 290 1.70e-86 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139810 AT5G16030.4 60.335 179 62 4 14 187 4 178 8.79e-61 192
Msa1139810 AT5G16030.1 60.335 179 62 4 14 187 4 178 1.15e-59 191
Msa1139810 AT5G16030.3 60.335 179 62 4 14 187 4 178 1.64e-59 191
Msa1139810 AT3G02500.3 67.407 135 42 2 14 147 4 137 3.85e-58 186
Msa1139810 AT3G02500.1 67.407 135 42 2 14 147 4 137 4.45e-58 186
Msa1139810 AT5G16030.2 60.000 180 62 5 14 187 4 179 8.34e-58 187
Msa1139810 AT3G02500.2 59.259 135 38 3 14 147 4 122 2.00e-45 153
Msa1139810 AT5G16030.5 60.000 90 33 1 98 187 2 88 1.31e-26 103

Find 68 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATAATAATATTACCTTTA+AGG 0.094228 7_4:+10530041 None:intergenic
AAAAGTAATGTACCTTTAAA+AGG 0.181978 7_4:+10530186 None:intergenic
TCTTTCACCACTGCCCTTAA+AGG 0.188324 7_4:-10530055 Msa1139810:intron
TGTTTAGAGAAGTTTAATTT+TGG 0.213095 7_4:-10525825 Msa1139810:three_prime_UTR
AAAGAAAATGTAATAATTAA+AGG 0.217046 7_4:-10525942 Msa1139810:three_prime_UTR
TATATATGCAATCCACTTTC+AGG 0.225308 7_4:-10529640 Msa1139810:CDS
TTCGATTCCTTTCTTGATCT+TGG 0.263763 7_4:+10525795 None:intergenic
AATAATAATATTACCTTTAA+GGG 0.264332 7_4:+10530042 None:intergenic
GAATTTAATGCAAACCCTTC+TGG 0.264923 7_4:+10529685 None:intergenic
TGTGTGACTCTTCTGAATTT+TGG 0.266040 7_4:+10530601 None:intergenic
ATTTGTAGAGGTTTGAAAAT+AGG 0.266378 7_4:+10530467 None:intergenic
ATCTCTTCTTCTTGAACTAT+AGG 0.274819 7_4:+10530377 None:intergenic
TTGTCTTGAAAAGAAATTAT+AGG 0.275895 7_4:+10530543 None:intergenic
TCTCTTCTTCTTGAACTATA+GGG 0.297403 7_4:+10530378 None:intergenic
AAGCAACTTTGCAAGCAAAT+AGG 0.298807 7_4:-10526064 Msa1139810:CDS
TTGAGTTCATAACTCATTCA+TGG 0.306645 7_4:-10530421 Msa1139810:exon
CAAGGGTAAGCTATAACAAT+TGG 0.332684 7_4:-10529720 Msa1139810:CDS
ATAGAAAAGTCAAGAGGAAT+TGG 0.339726 7_4:-10525614 Msa1139810:three_prime_UTR
AACAATTCTAGAAGGTATTC+AGG 0.354558 7_4:-10530294 Msa1139810:CDS
AGCAACTTTGCAAGCAAATA+GGG 0.387007 7_4:-10526063 Msa1139810:CDS
GGGATATGATTCAGCATTGT+AGG 0.390690 7_4:+10530398 None:intergenic
AAGAAAATGTAATAATTAAA+GGG 0.415042 7_4:-10525941 Msa1139810:three_prime_UTR
ACACTCTCTTCTTAGAACTT+TGG 0.443499 7_4:-10530575 Msa1139810:five_prime_UTR
TGAAGAAGCAGTACTAGAAA+TGG 0.463289 7_4:+10530218 None:intergenic
TTGGAATTATGATCAATAGA+AGG 0.467251 7_4:-10525595 Msa1139810:three_prime_UTR
AGAGTAACAACAATTCTAGA+AGG 0.470000 7_4:-10530302 Msa1139810:CDS
TCTAGTACTGCTTCTTCACC+TGG 0.472912 7_4:-10530213 Msa1139810:CDS
GTAATAATTAAAGGGAGAGT+AGG 0.473203 7_4:-10525933 Msa1139810:three_prime_UTR
TGCCAACGTGAATACTTTGT+TGG 0.484482 7_4:+10525734 None:intergenic
AGAGGTTTGAAAATAGGTGT+TGG 0.489540 7_4:+10530473 None:intergenic
ATGATGGATGGAGTTGAAGT+AGG 0.491118 7_4:+10529049 None:intergenic
ATTGGTACCTCTCCTGAAAG+TGG 0.491756 7_4:+10529628 None:intergenic
AATATTACCTTTAAGGGCAG+TGG 0.498396 7_4:+10530048 None:intergenic
GTGGTGAAAGAATATGTAGA+AGG 0.499571 7_4:+10530067 None:intergenic
TTTGCTGATAAACATTCCAT+TGG 0.503270 7_4:+10529610 None:intergenic
AAAGTAATGTACCTTTAAAA+GGG 0.508301 7_4:+10530187 None:intergenic
GTACCTTTAAAAGGGTATCC+AGG 0.521359 7_4:+10530195 None:intergenic
TTTAACCTCTCTATGATGGA+TGG 0.523140 7_4:+10529037 None:intergenic
AAGGGTAAGCTATAACAATT+GGG 0.524957 7_4:-10529719 Msa1139810:CDS
TTCATACAGCATTACAAGCA+AGG 0.534612 7_4:-10529738 Msa1139810:intron
CTTTGTTGTGGAATTTGTAG+AGG 0.540650 7_4:+10530455 None:intergenic
GAGTAGGTTTGAATGAATGA+TGG 0.542220 7_4:-10525917 Msa1139810:three_prime_UTR
GGTTTGAAAATAGGTGTTGG+AGG 0.543055 7_4:+10530476 None:intergenic
AGACTCACCAAGATCAAGAA+AGG 0.544503 7_4:-10525802 Msa1139810:three_prime_UTR
AAAGAGTAGAATCTTTGTTG+TGG 0.545864 7_4:+10530443 None:intergenic
GCAAATAGTGACTAGAAAAG+AGG 0.546301 7_4:+10530500 None:intergenic
TGATGGATGGAGTTGAAGTA+GGG 0.547063 7_4:+10529050 None:intergenic
TGAAAGATCATTATGAAACA+TGG 0.556613 7_4:-10526129 Msa1139810:CDS
GATGGAGTTGAAGTAGGGCT+AGG 0.557032 7_4:+10529055 None:intergenic
TGGGAGGGTTTATCTCCAGA+AGG 0.564685 7_4:-10529700 Msa1139810:CDS
ATCTTCGAAGTGCAATGACA+TGG 0.570183 7_4:+10530640 None:intergenic
TTTGCATTTGAATTTGAACT+AGG 0.572177 7_4:+10528995 None:intergenic
CAAAGTATTCACGTTGGCAG+CGG 0.577196 7_4:-10525730 Msa1139810:three_prime_UTR
TCATACAGCATTACAAGCAA+GGG 0.583811 7_4:-10529737 Msa1139810:intron
CTTGAAATAGAAAAGTCAAG+AGG 0.585793 7_4:-10525620 Msa1139810:three_prime_UTR
GGGAGGGTTTATCTCCAGAA+GGG 0.593966 7_4:-10529699 Msa1139810:CDS
GTAAGCTATAACAATTGGGA+GGG 0.601277 7_4:-10529715 Msa1139810:CDS
GAAAGATCATTATGAAACAT+GGG 0.602826 7_4:-10526128 Msa1139810:CDS
ACTGATCAACCAACTTTAGT+CGG 0.615528 7_4:-10525663 Msa1139810:three_prime_UTR
TGGTGAAAGAATATGTAGAA+GGG 0.619465 7_4:+10530068 None:intergenic
GGTAAGCTATAACAATTGGG+AGG 0.623556 7_4:-10529716 Msa1139810:CDS
GGTTTGCATTAAATTCAAAG+TGG 0.634839 7_4:-10529678 Msa1139810:CDS
ACTTTCAGGAGAGGTACCAA+TGG 0.645021 7_4:-10529626 Msa1139810:CDS
GACTAATATCCACAAAAGTG+TGG 0.645848 7_4:+10525698 None:intergenic
CAACTCCATCCATCATAGAG+AGG 0.653040 7_4:-10529042 Msa1139810:CDS
ATGCAATCCACTTTCAGGAG+AGG 0.654107 7_4:-10529635 Msa1139810:CDS
GAAGCTTTAGAGAAGATACA+AGG 0.659098 7_4:-10530260 Msa1139810:CDS
CACCAACAAAGTATTCACGT+TGG 0.680946 7_4:-10525736 Msa1139810:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATATTACCTTTAA+GGG + chr7_4:10526201-10526220 None:intergenic 10.0%
!! AAATAATAATATTACCTTTA+AGG + chr7_4:10526202-10526221 None:intergenic 10.0%
!! TATATTTATTGAGAAAAATT+TGG + chr7_4:10527297-10527316 None:intergenic 10.0%
!! AAAGAAAATTATATATATGA+CGG + chr7_4:10529431-10529450 None:intergenic 10.0%
!! AAAAAAAAAAAAAGTAACAA+CGG + chr7_4:10529875-10529894 None:intergenic 10.0%
!! ATTCAAAAAAATTCTATAAT+TGG + chr7_4:10530016-10530035 None:intergenic 10.0%
!! AAAGAAAATGTAATAATTAA+AGG - chr7_4:10530298-10530317 Msa1139810:CDS 10.0%
!! AAGAAAATGTAATAATTAAA+GGG - chr7_4:10530299-10530318 Msa1139810:CDS 10.0%
!!! GATCTGATTTTTTTTTTTTT+TGG + chr7_4:10527799-10527818 None:intergenic 15.0%
!!! TTCAATTTTCATATGAATTT+TGG + chr7_4:10527876-10527895 None:intergenic 15.0%
!! TATACTATTCATTCATTATT+AGG - chr7_4:10528934-10528953 Msa1139810:intron 15.0%
!! GTTTATATAATACGAATTAT+TGG - chr7_4:10529320-10529339 Msa1139810:intron 15.0%
!! AAGAAAATTATATATATGAC+GGG + chr7_4:10529430-10529449 None:intergenic 15.0%
!! AAAAAAAATCATAAATTAGC+TGG - chr7_4:10529779-10529798 Msa1139810:intron 15.0%
!! TTGTCTTGAAAAGAAATTAT+AGG + chr7_4:10525700-10525719 None:intergenic 20.0%
!!! AAAGTAATGTACCTTTAAAA+GGG + chr7_4:10526056-10526075 None:intergenic 20.0%
!! AAAAGTAATGTACCTTTAAA+AGG + chr7_4:10526057-10526076 None:intergenic 20.0%
!!! CTATATAGTTTGAGTTAAAA+TGG + chr7_4:10526082-10526101 None:intergenic 20.0%
!! TATATAGTTCATGAATTTCA+TGG - chr7_4:10526095-10526114 Msa1139810:CDS 20.0%
!!! ATAATTTTGCTGCAATATAA+AGG + chr7_4:10526318-10526337 None:intergenic 20.0%
!! TTTATATTGCAGCAAAATTA+TGG - chr7_4:10526317-10526336 Msa1139810:intron 20.0%
!!! TATTTTTGGTCTAAACTTTT+TGG - chr7_4:10526462-10526481 Msa1139810:intron 20.0%
!!! AACTTTTTGGATAAATTGAA+TGG - chr7_4:10526475-10526494 Msa1139810:intron 20.0%
!! AATAAGCTAGAAACAATTTA+TGG + chr7_4:10526922-10526941 None:intergenic 20.0%
!! AACAGATACTAAAATGTTTA+AGG + chr7_4:10527368-10527387 None:intergenic 20.0%
!! AATCTAATTATATGACAACA+AGG + chr7_4:10527949-10527968 None:intergenic 20.0%
!! TAGATTACAACATTATAATG+TGG - chr7_4:10527963-10527982 Msa1139810:intron 20.0%
!! AGATTACAACATTATAATGT+GGG - chr7_4:10527964-10527983 Msa1139810:intron 20.0%
!!! TTTTGAAATTTCTCATCAAA+TGG + chr7_4:10528189-10528208 None:intergenic 20.0%
!!! CAAAACAAATTTTGTTCAAT+TGG + chr7_4:10528357-10528376 None:intergenic 20.0%
!!! TTTCCTAGTTTTTACTAAAT+CGG - chr7_4:10528393-10528412 Msa1139810:intron 20.0%
!! ATATTATGCTATATACAAAG+TGG + chr7_4:10528994-10529013 None:intergenic 20.0%
!! CTATTCTATGATGTTATTAT+TGG + chr7_4:10529037-10529056 None:intergenic 20.0%
!! TAAAATATAAAAGACAGAAG+AGG + chr7_4:10529266-10529285 None:intergenic 20.0%
!! TCTTAAAATCCAAACAAATT+AGG - chr7_4:10529344-10529363 Msa1139810:intron 20.0%
!! TGCAATTTAAAAAATTCAGA+TGG + chr7_4:10529496-10529515 None:intergenic 20.0%
!!! TGTTTAGAGAAGTTTAATTT+TGG - chr7_4:10530415-10530434 Msa1139810:exon 20.0%
! ATTTGTAGAGGTTTGAAAAT+AGG + chr7_4:10525776-10525795 None:intergenic 25.0%
!!! CAGATTTTAATTTGAGAGAA+TGG - chr7_4:10525890-10525909 Msa1139810:three_prime_UTR 25.0%
! AAAAGGCGAAAGAATAATAA+AGG - chr7_4:10526230-10526249 Msa1139810:intron 25.0%
! CAGCAAAATTATGGAAAATA+TGG - chr7_4:10526326-10526345 Msa1139810:intron 25.0%
! CCTCAAAATTCTTTATATTC+CGG - chr7_4:10526379-10526398 Msa1139810:intron 25.0%
!!! AATTGTTTCTAGCTTATTTC+TGG - chr7_4:10526924-10526943 Msa1139810:intron 25.0%
! TTTGCATTTGAATTTGAACT+AGG + chr7_4:10527248-10527267 None:intergenic 25.0%
! AAATGCAAAAACAAAATCTG+AGG - chr7_4:10527259-10527278 Msa1139810:intron 25.0%
! ATAATTCAGTGTAATCATAG+AGG + chr7_4:10527568-10527587 None:intergenic 25.0%
! ATGAATTTGATTAAGTGAAG+AGG - chr7_4:10527669-10527688 Msa1139810:intron 25.0%
!!! TACTTTATTTTTACAGACAC+CGG + chr7_4:10527726-10527745 None:intergenic 25.0%
!!! CTTTGTTATTTTCTGTTGTT+TGG - chr7_4:10527750-10527769 Msa1139810:intron 25.0%
!! TGCAAAATTTTCAAACCAAA+AGG - chr7_4:10527846-10527865 Msa1139810:intron 25.0%
!!! ATGAATTTTGGAATTCCTTT+TGG + chr7_4:10527864-10527883 None:intergenic 25.0%
! GATTACAACATTATAATGTG+GGG - chr7_4:10527965-10527984 Msa1139810:intron 25.0%
! CATCCAAAAAGAAAAAAAAG+TGG - chr7_4:10528158-10528177 Msa1139810:intron 25.0%
! TTTACTAAATCGGCATTTAT+TGG - chr7_4:10528403-10528422 Msa1139810:intron 25.0%
! TTACTAAATCGGCATTTATT+GGG - chr7_4:10528404-10528423 Msa1139810:intron 25.0%
!!! TTTTGAAGTGAACTTTTGAA+TGG + chr7_4:10528557-10528576 None:intergenic 25.0%
! GAAAATTGAATCATTGAAGA+GGG + chr7_4:10528766-10528785 None:intergenic 25.0%
! TGAAAATTGAATCATTGAAG+AGG + chr7_4:10528767-10528786 None:intergenic 25.0%
!!! AAGTACAACATTTTTTCATC+AGG - chr7_4:10528873-10528892 Msa1139810:intron 25.0%
!!! AGTACAACATTTTTTCATCA+GGG - chr7_4:10528874-10528893 Msa1139810:intron 25.0%
! ATTATTAGGACCATATACAA+AGG - chr7_4:10528948-10528967 Msa1139810:intron 25.0%
! ATGTTATTATTGGTGAGATA+AGG + chr7_4:10529027-10529046 None:intergenic 25.0%
! GAATAGTCACATTAAACAAA+TGG - chr7_4:10529051-10529070 Msa1139810:CDS 25.0%
!! AATTATATATATGACGGGAA+TGG + chr7_4:10529425-10529444 None:intergenic 25.0%
! TTGTAATGAACTAGTACTAA+TGG + chr7_4:10529622-10529641 None:intergenic 25.0%
! TACACTCATATAGATGAAAT+TGG - chr7_4:10529645-10529664 Msa1139810:CDS 25.0%
! AATTTCATCTATATCGAACA+TGG + chr7_4:10529737-10529756 None:intergenic 25.0%
! GATGAAATTCGTTTACAATT+AGG - chr7_4:10529748-10529767 Msa1139810:intron 25.0%
! TGAAAGATCATTATGAAACA+TGG - chr7_4:10530111-10530130 Msa1139810:intron 25.0%
! GAAAGATCATTATGAAACAT+GGG - chr7_4:10530112-10530131 Msa1139810:intron 25.0%
!! TTTTTCACTTATCACTTCAA+AGG - chr7_4:10530269-10530288 Msa1139810:CDS 25.0%
!! TTTTCACTTATCACTTCAAA+GGG - chr7_4:10530270-10530289 Msa1139810:CDS 25.0%
!! AAAAAAATACCGACTAAAGT+TGG + chr7_4:10530589-10530608 None:intergenic 25.0%
! TTGGAATTATGATCAATAGA+AGG - chr7_4:10530645-10530664 Msa1139810:five_prime_UTR 25.0%
!!! AAAGAGGTTTTTTAGAGTGA+AGG + chr7_4:10525727-10525746 None:intergenic 30.0%
AAAGAGTAGAATCTTTGTTG+TGG + chr7_4:10525800-10525819 None:intergenic 30.0%
TTGAGTTCATAACTCATTCA+TGG - chr7_4:10525819-10525838 Msa1139810:three_prime_UTR 30.0%
TCTCTTCTTCTTGAACTATA+GGG + chr7_4:10525865-10525884 None:intergenic 30.0%
ATCTCTTCTTCTTGAACTAT+AGG + chr7_4:10525866-10525885 None:intergenic 30.0%
AGAGTAACAACAATTCTAGA+AGG - chr7_4:10525938-10525957 Msa1139810:three_prime_UTR 30.0%
!! AACAATTCTAGAAGGTATTC+AGG - chr7_4:10525946-10525965 Msa1139810:three_prime_UTR 30.0%
TGGTGAAAGAATATGTAGAA+GGG + chr7_4:10526175-10526194 None:intergenic 30.0%
! CATGATTCTAGTTAACAATG+TGG + chr7_4:10526263-10526282 None:intergenic 30.0%
CACATTGTTAACTAGAATCA+TGG - chr7_4:10526261-10526280 Msa1139810:intron 30.0%
!!! ATGGTTTTAAATTGCGATTG+CGG - chr7_4:10526280-10526299 Msa1139810:intron 30.0%
! CCGGAATATAAAGAATTTTG+AGG + chr7_4:10526382-10526401 None:intergenic 30.0%
AAGGGTAAGCTATAACAATT+GGG - chr7_4:10526521-10526540 Msa1139810:intron 30.0%
GGTTTGCATTAAATTCAAAG+TGG - chr7_4:10526562-10526581 Msa1139810:intron 30.0%
TATATATGCAATCCACTTTC+AGG - chr7_4:10526600-10526619 Msa1139810:intron 30.0%
TTTGCTGATAAACATTCCAT+TGG + chr7_4:10526633-10526652 None:intergenic 30.0%
TTATCAGCAAAAACTCTTAG+TGG - chr7_4:10526642-10526661 Msa1139810:intron 30.0%
TCTTCATGTGTGTAAATTGA+TGG + chr7_4:10526747-10526766 None:intergenic 30.0%
TCTCTTAAATTTCCAATTCC+AGG - chr7_4:10526771-10526790 Msa1139810:intron 30.0%
TTTGATTCCCAATTCTACTT+CGG - chr7_4:10526804-10526823 Msa1139810:intron 30.0%
TAAATAAGTCAATCCGAACA+TGG + chr7_4:10526830-10526849 None:intergenic 30.0%
TACACAGAAAAGAAGAAAGA+GGG - chr7_4:10527107-10527126 Msa1139810:intron 30.0%
AAAAACAAAATCTGAGGAAG+AGG - chr7_4:10527265-10527284 Msa1139810:intron 30.0%
! AAGGTTTGATTCTTTTGTCT+TGG + chr7_4:10527930-10527949 None:intergenic 30.0%
!!! TTTTTTTCACTAAGAGTTGC+TGG - chr7_4:10528132-10528151 Msa1139810:intron 30.0%
!!! CAGCCACTTTTTTTTCTTTT+TGG + chr7_4:10528164-10528183 None:intergenic 30.0%
CAAAAAGAAAAAAAAGTGGC+TGG - chr7_4:10528162-10528181 Msa1139810:intron 30.0%
TAACTCTTTAGACAATTGCT+AGG - chr7_4:10528210-10528229 Msa1139810:intron 30.0%
AACTCTTTAGACAATTGCTA+GGG - chr7_4:10528211-10528230 Msa1139810:intron 30.0%
!! ATGCCGATTTAGTAAAAACT+AGG + chr7_4:10528399-10528418 None:intergenic 30.0%
!!! GTACAACATTTTTTCATCAG+GGG - chr7_4:10528875-10528894 Msa1139810:intron 30.0%
! ATCCTTTAAAGGAGAATATC+AGG + chr7_4:10529100-10529119 None:intergenic 30.0%
CACATAGCATTATCCTTTAA+AGG + chr7_4:10529111-10529130 None:intergenic 30.0%
!! GTGCTCATTTTTCTTTTCAT+AGG - chr7_4:10529205-10529224 Msa1139810:intron 30.0%
!! GTGTTTCTACCTAATTTGTT+TGG + chr7_4:10529356-10529375 None:intergenic 30.0%
CTGATCTATGCTTAATCTAT+TGG + chr7_4:10529582-10529601 None:intergenic 30.0%
CAATAGATTAAGCATAGATC+AGG - chr7_4:10529580-10529599 Msa1139810:CDS 30.0%
! TCTACATTTTACAGTTGTAG+AGG - chr7_4:10529709-10529728 Msa1139810:CDS 30.0%
! TGTCTCTAAATTTTGTGATG+AGG - chr7_4:10529825-10529844 Msa1139810:intron 30.0%
! GTCTCTAAATTTTGTGATGA+GGG - chr7_4:10529826-10529845 Msa1139810:intron 30.0%
! AAATTTTGTGATGAGGGAAT+TGG - chr7_4:10529832-10529851 Msa1139810:intron 30.0%
ATGAACCTTGAAACTACATT+TGG - chr7_4:10529903-10529922 Msa1139810:intron 30.0%
TGAACCTTGAAACTACATTT+GGG - chr7_4:10529904-10529923 Msa1139810:intron 30.0%
AATTACACATGATTGAGATG+AGG - chr7_4:10529970-10529989 Msa1139810:intron 30.0%
AGACAAAAAGAGAAAAGAGT+GGG - chr7_4:10530135-10530154 Msa1139810:intron 30.0%
GAAGTGATAAGTGAAAAAGA+TGG + chr7_4:10530267-10530286 None:intergenic 30.0%
GTAATAATTAAAGGGAGAGT+AGG - chr7_4:10530307-10530326 Msa1139810:CDS 30.0%
! TAGTTAAATCCACACTTTTG+TGG - chr7_4:10530533-10530552 Msa1139810:five_prime_UTR 30.0%
CTTGAAATAGAAAAGTCAAG+AGG - chr7_4:10530620-10530639 Msa1139810:five_prime_UTR 30.0%
ATAGAAAAGTCAAGAGGAAT+TGG - chr7_4:10530626-10530645 Msa1139810:five_prime_UTR 30.0%
! TGTGTGACTCTTCTGAATTT+TGG + chr7_4:10525642-10525661 None:intergenic 35.0%
ACACTCTCTTCTTAGAACTT+TGG - chr7_4:10525665-10525684 Msa1139810:three_prime_UTR 35.0%
GCAAATAGTGACTAGAAAAG+AGG + chr7_4:10525743-10525762 None:intergenic 35.0%
AGAGGTTTGAAAATAGGTGT+TGG + chr7_4:10525770-10525789 None:intergenic 35.0%
! CTTTGTTGTGGAATTTGTAG+AGG + chr7_4:10525788-10525807 None:intergenic 35.0%
!! GAAGCTTTAGAGAAGATACA+AGG - chr7_4:10525980-10525999 Msa1139810:three_prime_UTR 35.0%
TGAAGAAGCAGTACTAGAAA+TGG + chr7_4:10526025-10526044 None:intergenic 35.0%
GTGGTGAAAGAATATGTAGA+AGG + chr7_4:10526176-10526195 None:intergenic 35.0%
! AATATTACCTTTAAGGGCAG+TGG + chr7_4:10526195-10526214 None:intergenic 35.0%
TTTAAATTGCAGTCTGCAAC+CGG + chr7_4:10526401-10526420 None:intergenic 35.0%
TTCATACAGCATTACAAGCA+AGG - chr7_4:10526502-10526521 Msa1139810:intron 35.0%
TCATACAGCATTACAAGCAA+GGG - chr7_4:10526503-10526522 Msa1139810:intron 35.0%
CAAGGGTAAGCTATAACAAT+TGG - chr7_4:10526520-10526539 Msa1139810:intron 35.0%
GTAAGCTATAACAATTGGGA+GGG - chr7_4:10526525-10526544 Msa1139810:intron 35.0%
GAATTTAATGCAAACCCTTC+TGG + chr7_4:10526558-10526577 None:intergenic 35.0%
TGTCTTGCAGAATAAACAAG+AGG + chr7_4:10526711-10526730 None:intergenic 35.0%
AAAGCATATGAACCTGGAAT+TGG + chr7_4:10526786-10526805 None:intergenic 35.0%
! GAATCAAAAGCATATGAACC+TGG + chr7_4:10526792-10526811 None:intergenic 35.0%
CTACACAGAAAAGAAGAAAG+AGG - chr7_4:10527106-10527125 Msa1139810:intron 35.0%
! TTTAACCTCTCTATGATGGA+TGG + chr7_4:10527206-10527225 None:intergenic 35.0%
! AGCTTTTAACCTCTCTATGA+TGG + chr7_4:10527210-10527229 None:intergenic 35.0%
! GTTTTTACTGTGTATGTGAG+TGG + chr7_4:10527416-10527435 None:intergenic 35.0%
! TCTAGGACACAAGAAATTTC+CGG - chr7_4:10527704-10527723 Msa1139810:intron 35.0%
! AATTGAACTAGTCTACCCTT+TGG - chr7_4:10527889-10527908 Msa1139810:intron 35.0%
GAAACAAAGAGGGACAAAAT+TGG + chr7_4:10528003-10528022 None:intergenic 35.0%
GCTTTCACATGAAACAAAGA+GGG + chr7_4:10528013-10528032 None:intergenic 35.0%
ACCAAAAACTATAGAAGGAG+GGG + chr7_4:10528035-10528054 None:intergenic 35.0%
GACCAAAAACTATAGAAGGA+GGG + chr7_4:10528036-10528055 None:intergenic 35.0%
!! TGATAGGAGGAAAGTATTGA+GGG + chr7_4:10528058-10528077 None:intergenic 35.0%
CACCTTTATGTAGAAGTTGA+GGG - chr7_4:10528290-10528309 Msa1139810:intron 35.0%
AAGTCATTGTTTCAACGGTA+GGG + chr7_4:10528326-10528345 None:intergenic 35.0%
CGATCAAGTCATTGTTTCAA+CGG + chr7_4:10528331-10528350 None:intergenic 35.0%
CGTTGAAACAATGACTTGAT+CGG - chr7_4:10528329-10528348 Msa1139810:intron 35.0%
! AAGTGAACTTTTGAATGGAG+AGG + chr7_4:10528552-10528571 None:intergenic 35.0%
GTGACTTCAAATGAGACAAA+GGG + chr7_4:10528837-10528856 None:intergenic 35.0%
AGTGACTTCAAATGAGACAA+AGG + chr7_4:10528838-10528857 None:intergenic 35.0%
TAAGTCCACTCCTTTGTATA+TGG + chr7_4:10528961-10528980 None:intergenic 35.0%
! CTTTAAAGGAGAATATCAGG+AGG + chr7_4:10529097-10529116 None:intergenic 35.0%
CTCCTGATATTCTCCTTTAA+AGG - chr7_4:10529095-10529114 Msa1139810:intron 35.0%
ACATTGTGACTCTGTTGTAT+TGG - chr7_4:10529234-10529253 Msa1139810:intron 35.0%
CCATTTCTCTCTAGATTCAA+CGG - chr7_4:10529684-10529703 Msa1139810:CDS 35.0%
CTAACCCAAATGTAGTTTCA+AGG + chr7_4:10529911-10529930 None:intergenic 35.0%
!! GAAACTACATTTGGGTTAGT+TGG - chr7_4:10529912-10529931 Msa1139810:intron 35.0%
GAGACAAAAAGAGAAAAGAG+TGG - chr7_4:10530134-10530153 Msa1139810:intron 35.0%
AAGCAACTTTGCAAGCAAAT+AGG - chr7_4:10530176-10530195 Msa1139810:intron 35.0%
AGCAACTTTGCAAGCAAATA+GGG - chr7_4:10530177-10530196 Msa1139810:intron 35.0%
GAGTAGGTTTGAATGAATGA+TGG - chr7_4:10530323-10530342 Msa1139810:CDS 35.0%
TTCGATTCCTTTCTTGATCT+TGG + chr7_4:10530448-10530467 None:intergenic 35.0%
GACTAATATCCACAAAAGTG+TGG + chr7_4:10530545-10530564 None:intergenic 35.0%
ACTGATCAACCAACTTTAGT+CGG - chr7_4:10530577-10530596 Msa1139810:five_prime_UTR 35.0%
ATCTTCGAAGTGCAATGACA+TGG + chr7_4:10525603-10525622 None:intergenic 40.0%
!! GGTTTGAAAATAGGTGTTGG+AGG + chr7_4:10525767-10525786 None:intergenic 40.0%
GGGATATGATTCAGCATTGT+AGG + chr7_4:10525845-10525864 None:intergenic 40.0%
! TCACCTGGATACCCTTTTAA+AGG - chr7_4:10526042-10526061 Msa1139810:CDS 40.0%
!! GTACCTTTAAAAGGGTATCC+AGG + chr7_4:10526048-10526067 None:intergenic 40.0%
!!! GAATTTTGAGGTCTCTGCAA+CGG + chr7_4:10526370-10526389 None:intergenic 40.0%
TAAGCACGCTATTCTAGTCT+TGG + chr7_4:10526425-10526444 None:intergenic 40.0%
GGTAAGCTATAACAATTGGG+AGG - chr7_4:10526524-10526543 Msa1139810:intron 40.0%
AACATGGCCGAAGTAGAATT+GGG + chr7_4:10526814-10526833 None:intergenic 40.0%
AATTCTACTTCGGCCATGTT+CGG - chr7_4:10526814-10526833 Msa1139810:intron 40.0%
!! TCTAGCTTATTTCTGGTAGC+CGG - chr7_4:10526931-10526950 Msa1139810:intron 40.0%
!! GTTGTTTTCGTAACCTATCC+TGG + chr7_4:10526964-10526983 None:intergenic 40.0%
CTGCTTGAACTAAGATAAGG+AGG + chr7_4:10527164-10527183 None:intergenic 40.0%
GGACTGCTTGAACTAAGATA+AGG + chr7_4:10527167-10527186 None:intergenic 40.0%
! TGATGGATGGAGTTGAAGTA+GGG + chr7_4:10527193-10527212 None:intergenic 40.0%
!! ATGATGGATGGAGTTGAAGT+AGG + chr7_4:10527194-10527213 None:intergenic 40.0%
AATGAAGCACAGAAACTCCT+TGG - chr7_4:10527497-10527516 Msa1139810:intron 40.0%
TGTAATCATAGAGGCAGTGT+CGG + chr7_4:10527559-10527578 None:intergenic 40.0%
TTAAAGCAACGACACAGACA+CGG + chr7_4:10527650-10527669 None:intergenic 40.0%
TTAAGTGAAGAGGATACACC+AGG - chr7_4:10527679-10527698 Msa1139810:intron 40.0%
AAAACACACCATTGGCCAAA+GGG + chr7_4:10527907-10527926 None:intergenic 40.0%
TGTCTTGGAAAACACACCAT+TGG + chr7_4:10527915-10527934 None:intergenic 40.0%
GGCTTTCACATGAAACAAAG+AGG + chr7_4:10528014-10528033 None:intergenic 40.0%
GGACCAAAAACTATAGAAGG+AGG + chr7_4:10528037-10528056 None:intergenic 40.0%
GAGGGACCAAAAACTATAGA+AGG + chr7_4:10528040-10528059 None:intergenic 40.0%
!! CTGATAGGAGGAAAGTATTG+AGG + chr7_4:10528059-10528078 None:intergenic 40.0%
TGACCAGAAAACAGACTGAT+AGG + chr7_4:10528074-10528093 None:intergenic 40.0%
CCTCAACTTCTACATAAAGG+TGG + chr7_4:10528292-10528311 None:intergenic 40.0%
CCACCTTTATGTAGAAGTTG+AGG - chr7_4:10528289-10528308 Msa1139810:intron 40.0%
GACCCTCAACTTCTACATAA+AGG + chr7_4:10528295-10528314 None:intergenic 40.0%
CAAGTCATTGTTTCAACGGT+AGG + chr7_4:10528327-10528346 None:intergenic 40.0%
ACACCATGAGCTACTACTTA+CGG - chr7_4:10528454-10528473 Msa1139810:intron 40.0%
GTGTCTCATATGATCTACTG+CGG + chr7_4:10528530-10528549 None:intergenic 40.0%
TAGGACCATATACAAAGGAG+TGG - chr7_4:10528953-10528972 Msa1139810:intron 40.0%
CCGTTGAATCTAGAGAGAAA+TGG + chr7_4:10529687-10529706 None:intergenic 40.0%
CAAAAAGAGAAAAGAGTGGG+TGG - chr7_4:10530138-10530157 Msa1139810:intron 40.0%
!! AGCAAATAGGGTGCTTTTCA+TGG - chr7_4:10530189-10530208 Msa1139810:intron 40.0%
AGACTCACCAAGATCAAGAA+AGG - chr7_4:10530438-10530457 Msa1139810:five_prime_UTR 40.0%
! CACCAACAAAGTATTCACGT+TGG - chr7_4:10530504-10530523 Msa1139810:five_prime_UTR 40.0%
TGCCAACGTGAATACTTTGT+TGG + chr7_4:10530509-10530528 None:intergenic 40.0%
TCTAGTACTGCTTCTTCACC+TGG - chr7_4:10526027-10526046 Msa1139810:CDS 45.0%
TCTTTCACCACTGCCCTTAA+AGG - chr7_4:10526185-10526204 Msa1139810:intron 45.0%
ATGCAATCCACTTTCAGGAG+AGG - chr7_4:10526605-10526624 Msa1139810:intron 45.0%
ATTGGTACCTCTCCTGAAAG+TGG + chr7_4:10526615-10526634 None:intergenic 45.0%
!! ACTTTCAGGAGAGGTACCAA+TGG - chr7_4:10526614-10526633 Msa1139810:intron 45.0%
GAACATGGCCGAAGTAGAAT+TGG + chr7_4:10526815-10526834 None:intergenic 45.0%
AGAGGGAATGACAAGAGATG+TGG - chr7_4:10527124-10527143 Msa1139810:intron 45.0%
GAGGGAATGACAAGAGATGT+GGG - chr7_4:10527125-10527144 Msa1139810:intron 45.0%
AGGGAATGACAAGAGATGTG+GGG - chr7_4:10527126-10527145 Msa1139810:intron 45.0%
CAACTCCATCCATCATAGAG+AGG - chr7_4:10527198-10527217 Msa1139810:intron 45.0%
GCACAGAAACTCCTTGGATT+AGG - chr7_4:10527503-10527522 Msa1139810:intron 45.0%
TATTATCCGTGTCTGCGTGT+CGG - chr7_4:10527603-10527622 Msa1139810:intron 45.0%
TTTCTTGTGTCCTAGACTCC+TGG + chr7_4:10527700-10527719 None:intergenic 45.0%
GAAAACACACCATTGGCCAA+AGG + chr7_4:10527908-10527927 None:intergenic 45.0%
! GCCCCTCCTTCTATAGTTTT+TGG - chr7_4:10528031-10528050 Msa1139810:intron 45.0%
CCAGAAAACAGACTGATAGG+AGG + chr7_4:10528071-10528090 None:intergenic 45.0%
! CCTCCTATCAGTCTGTTTTC+TGG - chr7_4:10528068-10528087 Msa1139810:intron 45.0%
ACTCGTCTTCACAACTGAGA+CGG + chr7_4:10528433-10528452 None:intergenic 45.0%
TCTCCGTAAGTAGTAGCTCA+TGG + chr7_4:10528460-10528479 None:intergenic 45.0%
TCTGTGTTCGTACTTCGAAC+GGG + chr7_4:10528595-10528614 None:intergenic 45.0%
GTCTGTGTTCGTACTTCGAA+CGG + chr7_4:10528596-10528615 None:intergenic 45.0%
TCGAAGTACGAACACAGACA+CGG - chr7_4:10528597-10528616 Msa1139810:intron 45.0%
CACAAGTGTCTGTGTCGTAT+CGG - chr7_4:10528687-10528706 Msa1139810:intron 45.0%
GTGTCAGTCACGATACATGT+CGG - chr7_4:10528709-10528728 Msa1139810:intron 45.0%
!! CTCTGATTGAAGGCGTGTTT+TGG + chr7_4:10528738-10528757 None:intergenic 45.0%
CAAAACACGCCTTCAATCAG+AGG - chr7_4:10528736-10528755 Msa1139810:intron 45.0%
GAGAAATGGTGTAGTCGTAG+AGG + chr7_4:10529673-10529692 None:intergenic 45.0%
GCATGACATTGATGTGAGAG+TGG - chr7_4:10530067-10530086 Msa1139810:CDS 45.0%
! CAAAGTATTCACGTTGGCAG+CGG - chr7_4:10530510-10530529 Msa1139810:five_prime_UTR 45.0%
!!! TTATTATTTTTTTTAGTAAA+AGG - chr7_4:10526213-10526232 Msa1139810:intron 5.0%
!!! TTTCATATATTTTATATTTT+TGG - chr7_4:10526448-10526467 Msa1139810:intron 5.0%
TGGGAGGGTTTATCTCCAGA+AGG - chr7_4:10526540-10526559 Msa1139810:intron 50.0%
GGGAGGGTTTATCTCCAGAA+GGG - chr7_4:10526541-10526560 Msa1139810:intron 50.0%
AACCTATCCTGGAGAGCTAC+CGG + chr7_4:10526953-10526972 None:intergenic 50.0%
GATGGAGTTGAAGTAGGGCT+AGG + chr7_4:10527188-10527207 None:intergenic 50.0%
! TCCTTGGATTAGGTGTGTCC+TGG - chr7_4:10527513-10527532 Msa1139810:intron 50.0%
ACCAGGACACACCTAATCCA+AGG + chr7_4:10527517-10527536 None:intergenic 50.0%
GATTAGGTGTGTCCTGGTGT+CGG - chr7_4:10527519-10527538 Msa1139810:intron 50.0%
AGAGGATACACCAGGAGTCT+AGG - chr7_4:10527687-10527706 Msa1139810:intron 50.0%
CTAGTCTACCCTTTGGCCAA+TGG - chr7_4:10527896-10527915 Msa1139810:intron 50.0%
GAGCTACTACTTACGGAGAG+TGG - chr7_4:10528461-10528480 Msa1139810:intron 50.0%
GTACTTCGAACGGGAGAACT+AGG + chr7_4:10528586-10528605 None:intergenic 50.0%
CTGACACAGACACGTCAACA+CGG - chr7_4:10528628-10528647 Msa1139810:intron 50.0%
GAGGGAGAACCTCTGATTGA+AGG + chr7_4:10528748-10528767 None:intergenic 50.0%
GAGAGTGGAAATGCATGTGC+AGG - chr7_4:10530082-10530101 Msa1139810:intron 50.0%
GGAAATGCATGTGCAGGTTG+AGG - chr7_4:10530088-10530107 Msa1139810:intron 50.0%
! GTCGGTGTCTGTGTCGTGTT+CGG - chr7_4:10527621-10527640 Msa1139810:intron 55.0%
AGCCGGTAGCTCTCCAGGAT+AGG - chr7_4:10526948-10526967 Msa1139810:intron 60.0%
ATCAACGCGTGTCCGACACC+AGG + chr7_4:10527534-10527553 None:intergenic 60.0%
CAGACACCGACACGCAGACA+CGG + chr7_4:10527612-10527631 None:intergenic 60.0%
CTGGTAGCCGGTAGCTCTCC+AGG - chr7_4:10526943-10526962 Msa1139810:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 10525548 10530714 10525548 ID=Msa1139810;Name=Msa1139810
chr7_4 mRNA 10525548 10530714 10525548 ID=Msa1139810-mRNA-1;Parent=Msa1139810;Name=Msa1139810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=290|0.75|0.6|1|0.5|0.4|5|470|234
chr7_4 exon 10525548 10526158 10525548 ID=Msa1139810-mRNA-1:exon:2589;Parent=Msa1139810-mRNA-1
chr7_4 exon 10528976 10529078 10528976 ID=Msa1139810-mRNA-1:exon:2588;Parent=Msa1139810-mRNA-1
chr7_4 exon 10529562 10529751 10529562 ID=Msa1139810-mRNA-1:exon:2587;Parent=Msa1139810-mRNA-1
chr7_4 exon 10530056 10530100 10530056 ID=Msa1139810-mRNA-1:exon:2586;Parent=Msa1139810-mRNA-1
chr7_4 exon 10530199 10530714 10530199 ID=Msa1139810-mRNA-1:exon:2585;Parent=Msa1139810-mRNA-1
chr7_4 five_prime_UTR 10530425 10530714 10530425 ID=Msa1139810-mRNA-1:five_prime_utr;Parent=Msa1139810-mRNA-1
chr7_4 CDS 10530199 10530424 10530199 ID=Msa1139810-mRNA-1:cds;Parent=Msa1139810-mRNA-1
chr7_4 CDS 10530056 10530100 10530056 ID=Msa1139810-mRNA-1:cds;Parent=Msa1139810-mRNA-1
chr7_4 CDS 10529562 10529751 10529562 ID=Msa1139810-mRNA-1:cds;Parent=Msa1139810-mRNA-1
chr7_4 CDS 10528976 10529078 10528976 ID=Msa1139810-mRNA-1:cds;Parent=Msa1139810-mRNA-1
chr7_4 CDS 10526018 10526158 10526018 ID=Msa1139810-mRNA-1:cds;Parent=Msa1139810-mRNA-1
chr7_4 three_prime_UTR 10525548 10526017 10525548 ID=Msa1139810-mRNA-1:three_prime_utr;Parent=Msa1139810-mRNA-1
Gene Sequence

>Msa1139810

ATGGCCTACAATGCTGAATCATATCCCTATAGTTCAAGAAGAAGAGATGAATCAGATTTTAATTTGAGAGAATGGTCAGTGAAAGCAAGAATCAGTAGAGAGAGTAACAACAATTCTAGAAGGTATTCAGGTTCTTATATGAGAAGCTTTAGAGAAGATACAAGGTCTCAAAGATCAAATATAACCATTTCTAGTACTGCTTCTTCACCTGGATACCCTTTTAAAGATGAAATTGACCCTTCTACATATTCTTTCACCACTGCCCTTAAAGCATTACAAGCAAGGGTAAGCTATAACAATTGGGAGGGTTTATCTCCAGAAGGGTTTGCATTAAATTCAAAGTGGAATGAAGCAGAAAAATATATATGCAATCCACTTTCAGGAGAGGTACCAATGGAATGTTTATCAGCAAAAACTCTTAGTGGAAGATCATTCAGAAACTCAACAAACAGAATCACAATTCCTAGCCCTACTTCAACTCCATCCATCATAGAGAGGTTAAAAGCTAGAGCTGTAGACTCACCTAGTTCAAATTCAAATGCAAAAACAAAATCTGAGGAAGAGGTTGAGGTGAAAGATCATTATGAAACATGGGAGACAAAAAGAGAAAAGAGTGGGTGGAGAAAGAAAGAAGAGAAGCAACTTTGCAAGCAAATAGGGTGCTTTTCATGGATGATGAAAAAGAAAAGACAGAGAAAGAAATAA

Protein sequence

>Msa1139810

MAYNAESYPYSSRRRDESDFNLREWSVKARISRESNNNSRRYSGSYMRSFREDTRSQRSNITISSTASSPGYPFKDEIDPSTYSFTTALKALQARVSYNNWEGLSPEGFALNSKWNEAEKYICNPLSGEVPMECLSAKTLSGRSFRNSTNRITIPSPTSTPSIIERLKARAVDSPSSNSNAKTKSEEEVEVKDHYETWETKREKSGWRKKEEKQLCKQIGCFSWMMKKKRQRKK*