Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199290 | XP_024632012.2 | 99.124 | 685 | 6 | 0 | 1 | 685 | 1 | 685 | 0.0 | 1418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199290 | sp|Q0WT48|DNJ21_ARATH | 78.880 | 625 | 131 | 1 | 1 | 625 | 1 | 624 | 0.0 | 1069 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199290 | A0A396JBB3 | 99.124 | 685 | 6 | 0 | 1 | 685 | 1 | 685 | 0.0 | 1418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0120880 | Msa0199290 | 0.814341 | 1.618751e-51 | -8.615850e-47 |
| Msa0199290 | Msa0450400 | -0.814118 | 1.813308e-51 | -8.615850e-47 |
| Msa0199290 | Msa0702720 | 0.802682 | 4.995478e-49 | -8.615850e-47 |
| Msa0199290 | Msa0958000 | 0.832042 | 1.184398e-55 | -8.615850e-47 |
| Msa0199290 | Msa1434100 | 0.809538 | 1.801243e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199290 | MtrunA17_Chr2g0301881 | 99.124 | 685 | 6 | 0 | 1 | 685 | 1 | 685 | 0.0 | 1418 |
| Msa0199290 | MtrunA17_Chr2g0312441 | 23.711 | 388 | 215 | 12 | 223 | 606 | 1869 | 2179 | 4.51e-21 | 99.0 |
| Msa0199290 | MtrunA17_Chr4g0003841 | 24.044 | 366 | 197 | 13 | 245 | 606 | 1845 | 2133 | 1.10e-17 | 88.2 |
| Msa0199290 | MtrunA17_Chr7g0242951 | 35.849 | 106 | 61 | 2 | 68 | 173 | 2 | 100 | 4.45e-14 | 75.5 |
| Msa0199290 | MtrunA17_Chr1g0206121 | 43.820 | 89 | 48 | 2 | 80 | 167 | 16 | 103 | 1.43e-13 | 72.0 |
| Msa0199290 | MtrunA17_Chr7g0269841 | 46.575 | 73 | 37 | 2 | 93 | 164 | 20 | 91 | 1.46e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199290 | AT1G79940.2 | 78.880 | 625 | 131 | 1 | 1 | 625 | 1 | 624 | 0.0 | 1069 |
| Msa0199290 | AT1G79940.3 | 78.880 | 625 | 131 | 1 | 1 | 625 | 1 | 624 | 0.0 | 1069 |
| Msa0199290 | AT1G79940.1 | 78.880 | 625 | 131 | 1 | 1 | 625 | 1 | 624 | 0.0 | 1069 |
| Msa0199290 | AT1G79940.4 | 79.181 | 562 | 117 | 0 | 1 | 562 | 1 | 562 | 0.0 | 963 |
| Msa0199290 | AT4G21180.1 | 67.921 | 611 | 190 | 3 | 1 | 611 | 1 | 605 | 0.0 | 889 |
| Msa0199290 | AT4G21180.2 | 68.362 | 531 | 162 | 3 | 81 | 611 | 1 | 525 | 0.0 | 775 |
| Msa0199290 | AT1G20960.1 | 25.945 | 397 | 212 | 13 | 223 | 615 | 1850 | 2168 | 2.91e-23 | 106 |
| Msa0199290 | AT1G20960.2 | 25.945 | 397 | 212 | 13 | 223 | 615 | 1850 | 2168 | 2.91e-23 | 106 |
| Msa0199290 | AT3G08970.1 | 42.308 | 78 | 44 | 1 | 99 | 176 | 27 | 103 | 9.94e-13 | 71.6 |
| Msa0199290 | AT3G08970.2 | 42.308 | 78 | 44 | 1 | 99 | 176 | 27 | 103 | 9.94e-13 | 71.6 |
| Msa0199290 | AT1G61770.1 | 49.206 | 63 | 31 | 1 | 99 | 161 | 34 | 95 | 3.09e-11 | 65.5 |
Find 190 sgRNAs with CRISPR-Local
Find 429 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTGTCAATATGAAAAT+TGG | 0.118226 | 2_1:-18174122 | None:intergenic |
| TGGCACTAGGGGTGCTGTTT+TGG | 0.143373 | 2_1:+18178893 | Msa0199290:CDS |
| AAGTATGGAAAATGAGTTTA+AGG | 0.171880 | 2_1:+18179325 | Msa0199290:three_prime_UTR |
| ATGCTTGGATTAATAATAAA+AGG | 0.173947 | 2_1:+18178481 | Msa0199290:CDS |
| TTCACAAGGAAGAGAATTTC+TGG | 0.179925 | 2_1:+18178550 | Msa0199290:CDS |
| TTTGATCCATTTAGTATTCT+TGG | 0.208184 | 2_1:+18174664 | Msa0199290:CDS |
| GCTCAGTTGACTCGTGAATT+TGG | 0.213919 | 2_1:+18175996 | Msa0199290:CDS |
| TGAGTTTAAGGTTTAAATTT+TGG | 0.231880 | 2_1:+18179337 | Msa0199290:three_prime_UTR |
| AAGTGATTTCAGACGGATTT+TGG | 0.235201 | 2_1:+18176040 | Msa0199290:CDS |
| CATAACTTTGTTATCGTATA+AGG | 0.248390 | 2_1:-18174161 | None:intergenic |
| TTGGGTGATTATGATTATTC+TGG | 0.255271 | 2_1:+18174442 | Msa0199290:CDS |
| TAACAACAGACTCAGTAATA+TGG | 0.262837 | 2_1:-18177839 | None:intergenic |
| GCAGAAGGTAAGAACATTTC+AGG | 0.270069 | 2_1:+18178278 | Msa0199290:intron |
| TATCTGAAACATTTAAAGTA+TGG | 0.280004 | 2_1:+18179310 | Msa0199290:three_prime_UTR |
| TGCTTCGGCAACTGCCTTAC+TGG | 0.280590 | 2_1:-18178712 | None:intergenic |
| TTACTTCATGAAGCCTTCTT+TGG | 0.292359 | 2_1:+18175545 | Msa0199290:CDS |
| TTGATGCATCACATAGTTTC+CGG | 0.324576 | 2_1:-18175505 | None:intergenic |
| TCTAATCCAAGAATACTAAA+TGG | 0.325667 | 2_1:-18174670 | None:intergenic |
| CTGAATATTGATGGGGCATC+TGG | 0.326145 | 2_1:+18175393 | Msa0199290:CDS |
| AGCAAGAGCAGGCCAAGTTT+TGG | 0.339056 | 2_1:+18175810 | Msa0199290:CDS |
| AAATTCTCTTCCTTGTGAAA+TGG | 0.342000 | 2_1:-18178546 | None:intergenic |
| CTTGACATTGTTACTGCTTT+GGG | 0.342791 | 2_1:+18174424 | Msa0199290:CDS |
| TGCTGTAACTGCTGCTTCTA+AGG | 0.343287 | 2_1:+18178644 | Msa0199290:CDS |
| ACTTGACATTGTTACTGCTT+TGG | 0.348421 | 2_1:+18174423 | Msa0199290:CDS |
| CTGCCTTACTGGTCTCCTTC+GGG | 0.350492 | 2_1:-18178701 | None:intergenic |
| TGTTGGACTACTTTCATACT+TGG | 0.358924 | 2_1:+18179237 | Msa0199290:three_prime_UTR |
| CGTGAAAATTACGAGAAATA+TGG | 0.360286 | 2_1:+18174945 | Msa0199290:CDS |
| ACTGCCTTACTGGTCTCCTT+CGG | 0.364831 | 2_1:-18178702 | None:intergenic |
| CAATTCCTTCTGAATATTGA+TGG | 0.365311 | 2_1:+18175384 | Msa0199290:CDS |
| ATTAGTGACGATGGCGGCTT+CGG | 0.365695 | 2_1:+18174079 | Msa0199290:exon |
| ATTGGTAATGGGCAAGTTCC+AGG | 0.367032 | 2_1:+18178761 | Msa0199290:CDS |
| CATGGGGAAGGGCCGCAATC+AGG | 0.368067 | 2_1:-18178512 | None:intergenic |
| TGCAATGACTGCTCTCGATC+AGG | 0.368636 | 2_1:+18174224 | Msa0199290:CDS |
| TTTATTGCAGGGATTTCAAA+TGG | 0.379260 | 2_1:+18175347 | Msa0199290:intron |
| TGATCTCACCCTTTGAAAGA+TGG | 0.379492 | 2_1:-18174261 | None:intergenic |
| TAAGGCAATTGCAGAATCTA+AGG | 0.382179 | 2_1:+18178662 | Msa0199290:CDS |
| AATTCTCTTCCTTGTGAAAT+GGG | 0.386027 | 2_1:-18178545 | None:intergenic |
| TCATGATATCAGCTAAATAA+AGG | 0.399212 | 2_1:-18179273 | None:intergenic |
| AAATGGGTAGTGAGGGGCAT+GGG | 0.401841 | 2_1:-18178529 | None:intergenic |
| TGAAGCCTTCTTTGGCCCCT+AGG | 0.405088 | 2_1:+18175553 | Msa0199290:CDS |
| GTTATCGTATAAGGAACTAT+AGG | 0.412957 | 2_1:-18174152 | None:intergenic |
| AACAACAGACTCAGTAATAT+GGG | 0.413471 | 2_1:-18177838 | None:intergenic |
| AAACGTCTTCAACCTGGGTC+TGG | 0.414315 | 2_1:-18174766 | None:intergenic |
| AATAAGAATCAAGCTGCTAA+TGG | 0.416100 | 2_1:+18179038 | Msa0199290:CDS |
| GTCCATCTTAGTTTATCTGT+TGG | 0.416909 | 2_1:+18179220 | Msa0199290:three_prime_UTR |
| ATTTCAGACTCTGCTGCTCC+AGG | 0.421259 | 2_1:-18174694 | None:intergenic |
| GGTAGTGAGGGGCATGGGGA+AGG | 0.423708 | 2_1:-18178524 | None:intergenic |
| TCATCATCGGTCCTTCGAAC+TGG | 0.424462 | 2_1:-18175725 | None:intergenic |
| CCCTTTGAAAGATGGATTTG+CGG | 0.426443 | 2_1:-18174253 | None:intergenic |
| AACTTAGAAGCGTCCGAAAA+CGG | 0.430251 | 2_1:-18179368 | None:intergenic |
| TTTATTACCTGTCTGCCATC+AGG | 0.432063 | 2_1:-18174972 | None:intergenic |
| GGCTGATGAGGGACCTATCA+TGG | 0.435870 | 2_1:+18178914 | Msa0199290:CDS |
| GCAGCATCCTGCACTAGTTA+AGG | 0.437254 | 2_1:+18175835 | Msa0199290:CDS |
| CACAAAGGCTGCTGAATACA+TGG | 0.438061 | 2_1:+18175697 | Msa0199290:CDS |
| GGATGAGGACAATGAGGATG+AGG | 0.438409 | 2_1:+18178953 | Msa0199290:CDS |
| AACGAACCCGGGCTGGCACT+AGG | 0.440580 | 2_1:+18178880 | Msa0199290:CDS |
| GCAGAATCTAAGGAGGGTTC+CGG | 0.443562 | 2_1:+18178672 | Msa0199290:CDS |
| TGCTTGGATTAATAATAAAA+GGG | 0.445011 | 2_1:+18178482 | Msa0199290:CDS |
| GCTATTGTTTGTGCGACTCT+TGG | 0.446942 | 2_1:+18178814 | Msa0199290:CDS |
| CAGCACCCCTAGTGCCAGCC+CGG | 0.447230 | 2_1:-18178887 | None:intergenic |
| TTATTGTCAATATGAAAATT+GGG | 0.448562 | 2_1:-18174121 | None:intergenic |
| GGCGAAGCTGCTGAAAGTTC+CGG | 0.449175 | 2_1:+18179077 | Msa0199290:CDS |
| TACTGAGTCTGTTGTTAAGA+AGG | 0.450238 | 2_1:+18177845 | Msa0199290:CDS |
| ATATGGGGCAGCTGCAGAAA+TGG | 0.450567 | 2_1:-18177822 | None:intergenic |
| TAACCTTGTAAGAGGTTGTT+CGG | 0.456285 | 2_1:+18174048 | Msa0199290:five_prime_UTR |
| CTGAAATCACTTGCTAAAGA+TGG | 0.456602 | 2_1:-18176029 | None:intergenic |
| TTGTTTGTGCGACTCTTGGT+TGG | 0.457161 | 2_1:+18178818 | Msa0199290:CDS |
| TCAACTCCATCCTCCATGAT+AGG | 0.460656 | 2_1:-18178927 | None:intergenic |
| ATTAATAATAAAAGGGGTAA+TGG | 0.462801 | 2_1:+18178489 | Msa0199290:CDS |
| TGTTTGTGCGACTCTTGGTT+GGG | 0.464424 | 2_1:+18178819 | Msa0199290:CDS |
| GCAGCTAAAGTTATCATTGA+AGG | 0.467597 | 2_1:-18173218 | None:intergenic |
| ACGAACCCGGGCTGGCACTA+GGG | 0.468397 | 2_1:+18178881 | Msa0199290:CDS |
| AGGATGCTGCTTCCAAAACT+TGG | 0.469816 | 2_1:-18175822 | None:intergenic |
| TATTTGCATTCTCTTGCCAT+TGG | 0.470723 | 2_1:+18175443 | Msa0199290:CDS |
| GGATGGAGTTGAGGAGGATG+AGG | 0.474148 | 2_1:+18178938 | Msa0199290:CDS |
| GGTCTCCTTCGGGCTTGCTC+CGG | 0.476446 | 2_1:-18178691 | None:intergenic |
| ATCTCATTCTTCATCAGAGC+CGG | 0.477837 | 2_1:-18179096 | None:intergenic |
| AATTCCTTCTGAATATTGAT+GGG | 0.478300 | 2_1:+18175385 | Msa0199290:CDS |
| AGTTATACCACGGAATGCTC+AGG | 0.478686 | 2_1:+18177019 | Msa0199290:CDS |
| TACCTTTCACAGTTGAATTG+AGG | 0.484964 | 2_1:-18173408 | None:intergenic |
| CTTCACCTTCTCCACTGCTT+CGG | 0.486591 | 2_1:-18178727 | None:intergenic |
| GTACCGAACAACCTCTTACA+AGG | 0.489561 | 2_1:-18174051 | None:intergenic |
| AAGGTTAGTTTCATGGATGA+AGG | 0.496224 | 2_1:+18178618 | Msa0199290:CDS |
| GCTCTTGCTTAATGTTCTTG+AGG | 0.496316 | 2_1:-18175796 | None:intergenic |
| AGTTACCCTCTGATGGGGCC+TGG | 0.496798 | 2_1:-18178779 | None:intergenic |
| CCACGGAATGCTCAGGGACA+TGG | 0.499438 | 2_1:+18177026 | Msa0199290:CDS |
| ACTCTTGGTTGGGCTGTGAC+AGG | 0.500034 | 2_1:+18178829 | Msa0199290:CDS |
| GAAGCAGTGGAGAAGGTGAA+GGG | 0.502372 | 2_1:+18178729 | Msa0199290:CDS |
| AGTTGCCGAAGCAGTGGAGA+AGG | 0.504802 | 2_1:+18178722 | Msa0199290:CDS |
| GTAGTGAGGGGCATGGGGAA+GGG | 0.505396 | 2_1:-18178523 | None:intergenic |
| CTTCATGAAGTAATAGTAAG+TGG | 0.505667 | 2_1:-18175535 | None:intergenic |
| GGAGAAGAGGGTATACAAGA+AGG | 0.506943 | 2_1:+18178441 | Msa0199290:CDS |
| AAATTATAGTTACCCTCTGA+TGG | 0.507044 | 2_1:-18178786 | None:intergenic |
| TCCTTGTGAAATGGGTAGTG+AGG | 0.507052 | 2_1:-18178537 | None:intergenic |
| AGAAATGGTGCAATGCCTTC+AGG | 0.508926 | 2_1:-18177807 | None:intergenic |
| TCAATATTCAGAAGGAATTG+AGG | 0.511132 | 2_1:-18175381 | None:intergenic |
| CAATATTCAGAAGGAATTGA+GGG | 0.516320 | 2_1:-18175380 | None:intergenic |
| CAGCTAAAGTTATCATTGAA+GGG | 0.516494 | 2_1:-18173217 | None:intergenic |
| CCTATGCAGGCTGTTCCTCT+CGG | 0.516922 | 2_1:+18177759 | Msa0199290:intron |
| TAAGGCAGTTGCCGAAGCAG+TGG | 0.517068 | 2_1:+18178716 | Msa0199290:CDS |
| AGTATTCTTGGATTAGAACC+TGG | 0.519389 | 2_1:+18174676 | Msa0199290:CDS |
| CCTTCATTAGCTCTTCGAGC+AGG | 0.522999 | 2_1:-18176076 | None:intergenic |
| CAGTCTCACATGTTACATCA+AGG | 0.523409 | 2_1:-18178416 | None:intergenic |
| CTTTGTCGAGCACATTGCTA+AGG | 0.526153 | 2_1:+18174893 | Msa0199290:CDS |
| ACATTGTTACCATCCATGCT+TGG | 0.528033 | 2_1:+18178466 | Msa0199290:CDS |
| TAAGATACCTTAACTAGTGC+AGG | 0.529625 | 2_1:-18175842 | None:intergenic |
| ATTTCAGGAACTTTATGAGA+TGG | 0.531199 | 2_1:+18178293 | Msa0199290:CDS |
| TGGCCATCCTGATGGCAGAC+AGG | 0.531999 | 2_1:+18174965 | Msa0199290:CDS |
| GTCCAACAGATAAACTAAGA+TGG | 0.534613 | 2_1:-18179222 | None:intergenic |
| TCAAGATCATCAAAGTATAC+CGG | 0.535024 | 2_1:+18175486 | Msa0199290:CDS |
| AAGCCCGAAGGAGACCAGTA+AGG | 0.539611 | 2_1:+18178698 | Msa0199290:CDS |
| CCGCAAATCCATCTTTCAAA+GGG | 0.541187 | 2_1:+18174253 | Msa0199290:CDS |
| TTATTGCAGGGATTTCAAAT+GGG | 0.542722 | 2_1:+18175348 | Msa0199290:intron |
| AATGGGTAGTGAGGGGCATG+GGG | 0.542912 | 2_1:-18178528 | None:intergenic |
| ACCGCAAATCCATCTTTCAA+AGG | 0.546433 | 2_1:+18174252 | Msa0199290:CDS |
| TGTTAAGAAGGTGGCCCGTA+AGG | 0.547535 | 2_1:+18177857 | Msa0199290:CDS |
| CTTTAGCAAGTGATTTCAGA+CGG | 0.548542 | 2_1:+18176033 | Msa0199290:CDS |
| GAGAAATATGGCCATCCTGA+TGG | 0.548787 | 2_1:+18174957 | Msa0199290:CDS |
| AGCTCAACCACACCGATCGC+AGG | 0.549171 | 2_1:-18177059 | None:intergenic |
| GAGCTACTTACTCAAACAGC+AGG | 0.550361 | 2_1:+18178333 | Msa0199290:CDS |
| AATATTGATGGGGCATCTGG+TGG | 0.550386 | 2_1:+18175396 | Msa0199290:CDS |
| AGCACCCCTAGTGCCAGCCC+GGG | 0.551172 | 2_1:-18178886 | None:intergenic |
| CAAGTTCCAGGCCCCATCAG+AGG | 0.551524 | 2_1:+18178773 | Msa0199290:CDS |
| CCTTGTGAAATGGGTAGTGA+GGG | 0.552245 | 2_1:-18178536 | None:intergenic |
| CGAACCCGGGCTGGCACTAG+GGG | 0.552863 | 2_1:+18178882 | Msa0199290:CDS |
| AATTATAGTTACCCTCTGAT+GGG | 0.555780 | 2_1:-18178785 | None:intergenic |
| TACCTCAATTCAACTGTGAA+AGG | 0.555853 | 2_1:+18173406 | Msa0199290:five_prime_UTR |
| GCTTTCTCAATGTATCATCC+AGG | 0.559702 | 2_1:+18177079 | Msa0199290:CDS |
| GCAATGACTGCTCTCGATCA+GGG | 0.560912 | 2_1:+18174225 | Msa0199290:CDS |
| ATTATTAATCCAAGCATGGA+TGG | 0.567950 | 2_1:-18178475 | None:intergenic |
| GAGGGACCTATCATGGAGGA+TGG | 0.572225 | 2_1:+18178921 | Msa0199290:CDS |
| CAAGAACATTAAGCAAGAGC+AGG | 0.574845 | 2_1:+18175799 | Msa0199290:CDS |
| ATATACCTAGGGGCCAAAGA+AGG | 0.576022 | 2_1:-18175558 | None:intergenic |
| ATTCTGTTTCGAACAATGTG+TGG | 0.576101 | 2_1:+18178586 | Msa0199290:CDS |
| TGTGAGACTGAAGGAGAAGA+GGG | 0.578820 | 2_1:+18178429 | Msa0199290:CDS |
| CACGGAATGCTCAGGGACAT+GGG | 0.581007 | 2_1:+18177027 | Msa0199290:CDS |
| CGTATAAGGAACTATAGGAA+TGG | 0.581561 | 2_1:-18174147 | None:intergenic |
| ATTAGCTCTTCGAGCAGGCG+AGG | 0.583437 | 2_1:-18176071 | None:intergenic |
| ATGTGAGACTGAAGGAGAAG+AGG | 0.583582 | 2_1:+18178428 | Msa0199290:CDS |
| TGAGGAGGATGAGGACAATG+AGG | 0.585156 | 2_1:+18178947 | Msa0199290:CDS |
| CGAAGCAGTGGAGAAGGTGA+AGG | 0.586598 | 2_1:+18178728 | Msa0199290:CDS |
| AGTGACGATGGCGGCTTCGG+AGG | 0.586761 | 2_1:+18174082 | Msa0199290:exon |
| TATTATGTACAGCAAAGTCA+TGG | 0.589343 | 2_1:+18175667 | Msa0199290:intron |
| ACATGGAAATTCCAGTTCGA+AGG | 0.590375 | 2_1:+18175714 | Msa0199290:CDS |
| AAGCAGTGGAGAAGGTGAAG+GGG | 0.593292 | 2_1:+18178730 | Msa0199290:CDS |
| AAGTTCCAGGCCCCATCAGA+GGG | 0.594239 | 2_1:+18178774 | Msa0199290:CDS |
| AGCTAAAGTTATCATTGAAG+GGG | 0.595894 | 2_1:-18173216 | None:intergenic |
| ACTTTATGAGATGGACTCAC+AGG | 0.596393 | 2_1:+18178302 | Msa0199290:CDS |
| TATCATGGAGGATGGAGTTG+AGG | 0.597246 | 2_1:+18178929 | Msa0199290:CDS |
| TGAGTCTGTTGTTAAGAAGG+TGG | 0.602960 | 2_1:+18177848 | Msa0199290:CDS |
| GCTTGGATTAATAATAAAAG+GGG | 0.607241 | 2_1:+18178483 | Msa0199290:CDS |
| AGCAGTGGAGAAGGTGAAGG+GGG | 0.609992 | 2_1:+18178731 | Msa0199290:CDS |
| GGCAATTGCAGAATCTAAGG+AGG | 0.610209 | 2_1:+18178665 | Msa0199290:CDS |
| CATGGAGGATGGAGTTGAGG+AGG | 0.610600 | 2_1:+18178932 | Msa0199290:CDS |
| AGTCTCACATGTTACATCAA+GGG | 0.611459 | 2_1:-18178415 | None:intergenic |
| CATAAAATCTATGAGTAGTG+AGG | 0.611918 | 2_1:+18174472 | Msa0199290:CDS |
| GAAATGGGTAGTGAGGGGCA+TGG | 0.614569 | 2_1:-18178530 | None:intergenic |
| GGGTTCCGGAGCAAGCCCGA+AGG | 0.615406 | 2_1:+18178686 | Msa0199290:CDS |
| ACATGTTACATCAAGGGTCA+AGG | 0.619156 | 2_1:-18178409 | None:intergenic |
| TTACCTGTCTGCCATCAGGA+TGG | 0.619728 | 2_1:-18174968 | None:intergenic |
| ATTCCTTCTGAATATTGATG+GGG | 0.620788 | 2_1:+18175386 | Msa0199290:CDS |
| AAGGGGTAATGGCCTGATTG+CGG | 0.621780 | 2_1:+18178500 | Msa0199290:CDS |
| ATGCCCCATCAATATTCAGA+AGG | 0.625006 | 2_1:-18175389 | None:intergenic |
| CCTGCTCGAAGAGCTAATGA+AGG | 0.628255 | 2_1:+18176076 | Msa0199290:CDS |
| AATGCCTTCAGGTGATCCAC+CGG | 0.631005 | 2_1:-18177796 | None:intergenic |
| GTTATACCACGGAATGCTCA+GGG | 0.631735 | 2_1:+18177020 | Msa0199290:CDS |
| CCCTCACTACCCATTTCACA+AGG | 0.633141 | 2_1:+18178536 | Msa0199290:CDS |
| CCATGTCCCTGAGCATTCCG+TGG | 0.633239 | 2_1:-18177026 | None:intergenic |
| GTTACATCAAGGGTCAAGGA+AGG | 0.635132 | 2_1:-18178405 | None:intergenic |
| ATATTGATGGGGCATCTGGT+GGG | 0.635499 | 2_1:+18175397 | Msa0199290:CDS |
| GGGTGGCTGAGACCTGCGAT+CGG | 0.642660 | 2_1:+18177047 | Msa0199290:CDS |
| GCAATTGCAGAATCTAAGGA+GGG | 0.643438 | 2_1:+18178666 | Msa0199290:CDS |
| TCAAGGAAGGCATCATATCG+AGG | 0.660722 | 2_1:-18178392 | None:intergenic |
| TAGACAACAGCAATGACCAA+TGG | 0.666183 | 2_1:-18175459 | None:intergenic |
| CTTCTGAAGAGGTTCATCAT+CGG | 0.667489 | 2_1:-18175738 | None:intergenic |
| GCAGTGGAGAAGGTGAAGGG+GGG | 0.669906 | 2_1:+18178732 | Msa0199290:CDS |
| AAAAGATGGCAGTTATACCA+CGG | 0.676825 | 2_1:+18177009 | Msa0199290:intron |
| ATTATAGTTACCCTCTGATG+GGG | 0.682503 | 2_1:-18178784 | None:intergenic |
| ACTACCGGTGGATCACCTGA+AGG | 0.684565 | 2_1:+18177792 | Msa0199290:CDS |
| CTGAAGATTAGTGACGATGG+CGG | 0.685534 | 2_1:+18174073 | Msa0199290:exon |
| CTTGTGAAATGGGTAGTGAG+GGG | 0.685622 | 2_1:-18178535 | None:intergenic |
| ACAACAGACTCAGTAATATG+GGG | 0.687656 | 2_1:-18177837 | None:intergenic |
| GATGTAACATGTGAGACTGA+AGG | 0.694718 | 2_1:+18178420 | Msa0199290:CDS |
| GCTGAGACCTGCGATCGGTG+TGG | 0.698808 | 2_1:+18177052 | Msa0199290:CDS |
| AGTCATGGATGTCTTCACAA+AGG | 0.701337 | 2_1:+18175682 | Msa0199290:CDS |
| GTACTGAAGATTAGTGACGA+TGG | 0.705816 | 2_1:+18174070 | Msa0199290:exon |
| GGAATGCTCAGGGACATGGG+TGG | 0.707591 | 2_1:+18177030 | Msa0199290:CDS |
| AGCTACTTACTCAAACAGCA+GGG | 0.713855 | 2_1:+18178334 | Msa0199290:CDS |
| GATAACAAAGTTATGTCGTG+CGG | 0.740173 | 2_1:+18174169 | Msa0199290:CDS |
| TGATGAGGGACCTATCATGG+AGG | 0.828116 | 2_1:+18178917 | Msa0199290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTTTTTTTTTGAATT+TGG | + | chr2_1:18175592-18175611 | Msa0199290:intron | 10.0% |
| !!! | TCTTTTTTTTTTTTGAATTT+GGG | + | chr2_1:18175593-18175612 | Msa0199290:intron | 10.0% |
| !! | TAAAAAAAGAATAATCTATT+TGG | - | chr2_1:18175885-18175904 | None:intergenic | 10.0% |
| !!! | ATAGATTATTCTTTTTTTAT+TGG | + | chr2_1:18175886-18175905 | Msa0199290:intron | 10.0% |
| !!! | TAGATTATTCTTTTTTTATT+GGG | + | chr2_1:18175887-18175906 | Msa0199290:intron | 10.0% |
| !!! | TATTTTAAAACAACTTTAAT+AGG | + | chr2_1:18177712-18177731 | Msa0199290:intron | 10.0% |
| !!! | ATTATAATTGTGTTTTTTGT+TGG | + | chr2_1:18173789-18173808 | Msa0199290:intron | 15.0% |
| !!! | TTTTGTTTTGTTGTTTTTTT+AGG | + | chr2_1:18174018-18174037 | Msa0199290:intron | 15.0% |
| !! | TTATTGTCAATATGAAAATT+GGG | - | chr2_1:18174124-18174143 | None:intergenic | 15.0% |
| !! | ATTATTGTCAATATGAAAAT+TGG | - | chr2_1:18174125-18174144 | None:intergenic | 15.0% |
| !!! | AATTTTCATATTGACAATAA+TGG | + | chr2_1:18174124-18174143 | Msa0199290:CDS | 15.0% |
| !! | CTGAAATAAAGAAAAAATAT+AGG | + | chr2_1:18174710-18174729 | Msa0199290:CDS | 15.0% |
| !! | TAATAAGAATGAAAGATAAA+TGG | - | chr2_1:18175631-18175650 | None:intergenic | 15.0% |
| !!! | AAACAACAATTTTCAAAATA+GGG | - | chr2_1:18176190-18176209 | None:intergenic | 15.0% |
| !!! | TCTTTAGTTTTACAAAATTT+TGG | - | chr2_1:18176686-18176705 | None:intergenic | 15.0% |
| !! | ATTTCATAGTCTATTATTAT+AGG | + | chr2_1:18177360-18177379 | Msa0199290:intron | 15.0% |
| !!! | GTTAGTTTAATTTTATGATA+TGG | + | chr2_1:18177590-18177609 | Msa0199290:intron | 15.0% |
| !!! | TTTTGTTTTTGTTTTTCAAA+AGG | + | chr2_1:18179121-18179140 | Msa0199290:three_prime_UTR | 15.0% |
| !!! | GAAAATTTTGTTAAGTTGTA+AGG | - | chr2_1:18173486-18173505 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTTTAGTTTCAAT+TGG | + | chr2_1:18173662-18173681 | Msa0199290:intron | 20.0% |
| !! | AGAAATCACGAAAAAAAAAA+GGG | - | chr2_1:18173698-18173717 | None:intergenic | 20.0% |
| !!! | TCAATTTTTGTAAAGAAACT+TGG | + | chr2_1:18173847-18173866 | Msa0199290:intron | 20.0% |
| !! | TTCAATTGTGAGATTTAATT+CGG | + | chr2_1:18174336-18174355 | Msa0199290:intron | 20.0% |
| !! | ATTGCAAGTTATAATGAATT+TGG | + | chr2_1:18174501-18174520 | Msa0199290:intron | 20.0% |
| !!! | AGATTTCAATTTAGTATTGA+TGG | + | chr2_1:18174539-18174558 | Msa0199290:intron | 20.0% |
| !!! | GATTTCAATTTAGTATTGAT+GGG | + | chr2_1:18174540-18174559 | Msa0199290:intron | 20.0% |
| !!! | ACTGTATTTTTGTTTGTATT+AGG | + | chr2_1:18175011-18175030 | Msa0199290:intron | 20.0% |
| !!! | GAAACAACAATTTTCAAAAT+AGG | - | chr2_1:18176191-18176210 | None:intergenic | 20.0% |
| !! | TATGCATTGGAAAATATTTA+AGG | - | chr2_1:18176253-18176272 | None:intergenic | 20.0% |
| !!! | ACATGGTTTTAAATTATGAA+AGG | + | chr2_1:18176534-18176553 | Msa0199290:intron | 20.0% |
| !! | ACATATTTGCAAAAACATTT+GGG | - | chr2_1:18176651-18176670 | None:intergenic | 20.0% |
| !! | AACATATTTGCAAAAACATT+TGG | - | chr2_1:18176652-18176671 | None:intergenic | 20.0% |
| !! | CTAAAGAAATTAAAAGAAAC+AGG | + | chr2_1:18176699-18176718 | Msa0199290:intron | 20.0% |
| !! | CTTTCATCACAATAAAAATA+TGG | + | chr2_1:18177174-18177193 | Msa0199290:intron | 20.0% |
| !! | ATAATAGACTATGAAATGAA+TGG | - | chr2_1:18177357-18177376 | None:intergenic | 20.0% |
| !! | TGAATGCTATCAAAATAATT+TGG | + | chr2_1:18177474-18177493 | Msa0199290:intron | 20.0% |
| !! | TATTGATATGTTCTTAGTTA+AGG | + | chr2_1:18177552-18177571 | Msa0199290:intron | 20.0% |
| !!! | ATATTAGTTGGTAAAATAAG+CGG | - | chr2_1:18177678-18177697 | None:intergenic | 20.0% |
| !! | GAAAAAGCAATAATATTAGT+TGG | - | chr2_1:18177690-18177709 | None:intergenic | 20.0% |
| !! | AGTATGACATAAAAATCAAT+TGG | - | chr2_1:18178190-18178209 | None:intergenic | 20.0% |
| !!! | TTTTATTATTAATCCAAGCA+TGG | - | chr2_1:18178482-18178501 | None:intergenic | 20.0% |
| !! | ATGCTTGGATTAATAATAAA+AGG | + | chr2_1:18178481-18178500 | Msa0199290:CDS | 20.0% |
| !! | TGCTTGGATTAATAATAAAA+GGG | + | chr2_1:18178482-18178501 | Msa0199290:CDS | 20.0% |
| !! | ATTAATAATAAAAGGGGTAA+TGG | + | chr2_1:18178489-18178508 | Msa0199290:CDS | 20.0% |
| !!! | TATCTGAAACATTTAAAGTA+TGG | + | chr2_1:18179310-18179329 | Msa0199290:three_prime_UTR | 20.0% |
| !!! | TGAGTTTAAGGTTTAAATTT+TGG | + | chr2_1:18179337-18179356 | Msa0199290:three_prime_UTR | 20.0% |
| !!! | TATTAGATAGTTTTAGTTGA+GGG | + | chr2_1:18179394-18179413 | Msa0199290:three_prime_UTR | 20.0% |
| ! | AATAGTAGAAACAAAACCTA+GGG | - | chr2_1:18173573-18173592 | None:intergenic | 25.0% |
| ! | GAGAAATCACGAAAAAAAAA+AGG | - | chr2_1:18173699-18173718 | None:intergenic | 25.0% |
| !! | TTTTGTAAAGAAACTTGGAT+TGG | + | chr2_1:18173852-18173871 | Msa0199290:intron | 25.0% |
| ! | TTTGTAAAGAAACTTGGATT+GGG | + | chr2_1:18173853-18173872 | Msa0199290:intron | 25.0% |
| ! | TGATGTTCATAGATTGAATT+AGG | + | chr2_1:18173961-18173980 | Msa0199290:intron | 25.0% |
| !!! | GTTTTTTTTAACCTTGTAAG+AGG | + | chr2_1:18174040-18174059 | Msa0199290:five_prime_UTR | 25.0% |
| !! | CATAACTTTGTTATCGTATA+AGG | - | chr2_1:18174164-18174183 | None:intergenic | 25.0% |
| ! | TTTAATTCGGAATTCTGATT+TGG | + | chr2_1:18174349-18174368 | Msa0199290:intron | 25.0% |
| ! | TTAATTCGGAATTCTGATTT+GGG | + | chr2_1:18174350-18174369 | Msa0199290:intron | 25.0% |
| ! | TTTGATCCATTTAGTATTCT+TGG | + | chr2_1:18174664-18174683 | Msa0199290:CDS | 25.0% |
| ! | TCTAATCCAAGAATACTAAA+TGG | - | chr2_1:18174673-18174692 | None:intergenic | 25.0% |
| ! | AGAAACAATATCAGTTACAT+GGG | - | chr2_1:18174843-18174862 | None:intergenic | 25.0% |
| ! | AAGAAACAATATCAGTTACA+TGG | - | chr2_1:18174844-18174863 | None:intergenic | 25.0% |
| !!! | TCTTATTCATTTTGTTTCAG+AGG | + | chr2_1:18174860-18174879 | Msa0199290:intron | 25.0% |
| ! | TATATAGTCTGCTTTGTATT+TGG | + | chr2_1:18175038-18175057 | Msa0199290:intron | 25.0% |
| ! | AATTCTTAACTGTGATTAAC+TGG | - | chr2_1:18175150-18175169 | None:intergenic | 25.0% |
| !! | TATGTGGAATATTTTATTGC+AGG | + | chr2_1:18175335-18175354 | Msa0199290:intron | 25.0% |
| !! | ATGTGGAATATTTTATTGCA+GGG | + | chr2_1:18175336-18175355 | Msa0199290:intron | 25.0% |
| ! | AATTCCTTCTGAATATTGAT+GGG | + | chr2_1:18175385-18175404 | Msa0199290:CDS | 25.0% |
| !! | AGTTAAGGTATCTTATTGTA+TGG | + | chr2_1:18175850-18175869 | Msa0199290:intron | 25.0% |
| ! | TAATTGTTTAAATTGGATCC+AGG | - | chr2_1:18176299-18176318 | None:intergenic | 25.0% |
| !! | AATTTTATGTAAACGCCTTA+AGG | + | chr2_1:18176458-18176477 | Msa0199290:intron | 25.0% |
| ! | TTATGAAAGGAACTAAATAG+TGG | + | chr2_1:18176547-18176566 | Msa0199290:intron | 25.0% |
| !! | AATGTGCTTCATTTTAAATG+TGG | - | chr2_1:18176853-18176872 | None:intergenic | 25.0% |
| !! | AGAAAAACTTGATGATCATA+GGG | - | chr2_1:18176880-18176899 | None:intergenic | 25.0% |
| !! | AAGAAAAACTTGATGATCAT+AGG | - | chr2_1:18176881-18176900 | None:intergenic | 25.0% |
| ! | AATGAATCTAAGTCAATTTG+TGG | + | chr2_1:18177103-18177122 | Msa0199290:intron | 25.0% |
| ! | ATATAATATACCAGAGACAA+AGG | - | chr2_1:18177286-18177305 | None:intergenic | 25.0% |
| !! | CAAAATAATTTGGTTTCCTT+TGG | + | chr2_1:18177484-18177503 | Msa0199290:intron | 25.0% |
| ! | CATAGAAAAATGTGCATAAA+TGG | - | chr2_1:18177997-18178016 | None:intergenic | 25.0% |
| !! | TACCATATATACGGATTAAA+GGG | + | chr2_1:18178056-18178075 | Msa0199290:intron | 25.0% |
| !! | GCTGTTTGAAATTTAAATGT+TGG | + | chr2_1:18178160-18178179 | Msa0199290:intron | 25.0% |
| ! | GCTTGGATTAATAATAAAAG+GGG | + | chr2_1:18178483-18178502 | Msa0199290:CDS | 25.0% |
| ! | AATGGAACCACAAATAAAAA+TGG | + | chr2_1:18179056-18179075 | Msa0199290:CDS | 25.0% |
| ! | TCATGATATCAGCTAAATAA+AGG | - | chr2_1:18179276-18179295 | None:intergenic | 25.0% |
| ! | AAGTATGGAAAATGAGTTTA+AGG | + | chr2_1:18179325-18179344 | Msa0199290:three_prime_UTR | 25.0% |
| !!! | GTATTAGATAGTTTTAGTTG+AGG | + | chr2_1:18179393-18179412 | Msa0199290:three_prime_UTR | 25.0% |
| GAATAGTAGAAACAAAACCT+AGG | - | chr2_1:18173574-18173593 | None:intergenic | 30.0% | |
| GTTATCGTATAAGGAACTAT+AGG | - | chr2_1:18174155-18174174 | None:intergenic | 30.0% | |
| TTGGGTGATTATGATTATTC+TGG | + | chr2_1:18174442-18174461 | Msa0199290:CDS | 30.0% | |
| CATAAAATCTATGAGTAGTG+AGG | + | chr2_1:18174472-18174491 | Msa0199290:CDS | 30.0% | |
| CTAAATTGAAATCTCATGCA+GGG | - | chr2_1:18174533-18174552 | None:intergenic | 30.0% | |
| ACTAAATTGAAATCTCATGC+AGG | - | chr2_1:18174534-18174553 | None:intergenic | 30.0% | |
| ! | TTTTGATGCTTGCAAGAAAA+TGG | + | chr2_1:18174803-18174822 | Msa0199290:intron | 30.0% |
| TTTGATGCTTGCAAGAAAAT+GGG | + | chr2_1:18174804-18174823 | Msa0199290:intron | 30.0% | |
| CGTGAAAATTACGAGAAATA+TGG | + | chr2_1:18174945-18174964 | Msa0199290:CDS | 30.0% | |
| CTGAAATGCATAGAAAGTAA+GGG | - | chr2_1:18175288-18175307 | None:intergenic | 30.0% | |
| ACTGAAATGCATAGAAAGTA+AGG | - | chr2_1:18175289-18175308 | None:intergenic | 30.0% | |
| GTTTCTGATAGTTTACATTC+TGG | + | chr2_1:18175307-18175326 | Msa0199290:intron | 30.0% | |
| TTTATTGCAGGGATTTCAAA+TGG | + | chr2_1:18175347-18175366 | Msa0199290:intron | 30.0% | |
| TTATTGCAGGGATTTCAAAT+GGG | + | chr2_1:18175348-18175367 | Msa0199290:intron | 30.0% | |
| CAATATTCAGAAGGAATTGA+GGG | - | chr2_1:18175383-18175402 | None:intergenic | 30.0% | |
| TCAATATTCAGAAGGAATTG+AGG | - | chr2_1:18175384-18175403 | None:intergenic | 30.0% | |
| CAATTCCTTCTGAATATTGA+TGG | + | chr2_1:18175384-18175403 | Msa0199290:CDS | 30.0% | |
| ATTCCTTCTGAATATTGATG+GGG | + | chr2_1:18175386-18175405 | Msa0199290:CDS | 30.0% | |
| !! | ATACTTTTGCTTTGGATTGT+TGG | + | chr2_1:18175420-18175439 | Msa0199290:CDS | 30.0% |
| TCAAGATCATCAAAGTATAC+CGG | + | chr2_1:18175486-18175505 | Msa0199290:CDS | 30.0% | |
| CTTCATGAAGTAATAGTAAG+TGG | - | chr2_1:18175538-18175557 | None:intergenic | 30.0% | |
| TTGCACAAGAAATATACCTA+GGG | - | chr2_1:18175572-18175591 | None:intergenic | 30.0% | |
| ATTGCACAAGAAATATACCT+AGG | - | chr2_1:18175573-18175592 | None:intergenic | 30.0% | |
| GAATGAAAGATAAATGGTGT+GGG | - | chr2_1:18175625-18175644 | None:intergenic | 30.0% | |
| AGAATGAAAGATAAATGGTG+TGG | - | chr2_1:18175626-18175645 | None:intergenic | 30.0% | |
| TATTATGTACAGCAAAGTCA+TGG | + | chr2_1:18175667-18175686 | Msa0199290:intron | 30.0% | |
| ! | AACATAAAAAGCTTCTGAAG+AGG | - | chr2_1:18175752-18175771 | None:intergenic | 30.0% |
| ! | TCTTCAGAAGCTTTTTATGT+TGG | + | chr2_1:18175751-18175770 | Msa0199290:CDS | 30.0% |
| ! | AGAAGCTTTTTATGTTGGTA+AGG | + | chr2_1:18175756-18175775 | Msa0199290:CDS | 30.0% |
| !!! | CCATGCTATTTTCTTTTAGA+CGG | + | chr2_1:18175959-18175978 | Msa0199290:intron | 30.0% |
| ! | TTATTCGAACTGCATTTTAG+AGG | + | chr2_1:18176404-18176423 | Msa0199290:intron | 30.0% |
| AGAGGAATTGAAATTGTGTA+TGG | + | chr2_1:18176422-18176441 | Msa0199290:intron | 30.0% | |
| TTTCCCTCATACAAATGTAT+TGG | + | chr2_1:18176503-18176522 | Msa0199290:intron | 30.0% | |
| CTTCCAATACATTTGTATGA+GGG | - | chr2_1:18176509-18176528 | None:intergenic | 30.0% | |
| ACTTCCAATACATTTGTATG+AGG | - | chr2_1:18176510-18176529 | None:intergenic | 30.0% | |
| CATACAAATGTATTGGAAGT+TGG | + | chr2_1:18176510-18176529 | Msa0199290:intron | 30.0% | |
| TGTAACTATCTTTAGATGTG+TGG | + | chr2_1:18176571-18176590 | Msa0199290:intron | 30.0% | |
| ! | AAAAACATTTGGGATTGAGT+TGG | - | chr2_1:18176641-18176660 | None:intergenic | 30.0% |
| GAGGGAAATGCAAATATAAT+AGG | - | chr2_1:18176965-18176984 | None:intergenic | 30.0% | |
| ! | ATTGACTTAGATTCATTACC+TGG | - | chr2_1:18177100-18177119 | None:intergenic | 30.0% |
| !! | TGAAAGAAAGTATCAGAGAA+GGG | - | chr2_1:18177160-18177179 | None:intergenic | 30.0% |
| !! | ATGAAAGAAAGTATCAGAGA+AGG | - | chr2_1:18177161-18177180 | None:intergenic | 30.0% |
| TCAATCAAGACCATTATTCA+AGG | + | chr2_1:18177306-18177325 | Msa0199290:intron | 30.0% | |
| ATAGACTATGAAATGAATGG+AGG | - | chr2_1:18177354-18177373 | None:intergenic | 30.0% | |
| !! | AAACTGTTTAAAAGTGCTTG+TGG | + | chr2_1:18177447-18177466 | Msa0199290:intron | 30.0% |
| ! | TTCTTATTCTGATGCCTTTT+GGG | + | chr2_1:18177517-18177536 | Msa0199290:intron | 30.0% |
| AACAACAGACTCAGTAATAT+GGG | - | chr2_1:18177841-18177860 | None:intergenic | 30.0% | |
| TAACAACAGACTCAGTAATA+TGG | - | chr2_1:18177842-18177861 | None:intergenic | 30.0% | |
| TTAATCCGTATATATGGTAC+TGG | - | chr2_1:18178055-18178074 | None:intergenic | 30.0% | |
| ! | GTACCATATATACGGATTAA+AGG | + | chr2_1:18178055-18178074 | Msa0199290:intron | 30.0% |
| ATCCCTTTAATCCGTATATA+TGG | - | chr2_1:18178061-18178080 | None:intergenic | 30.0% | |
| TAAAGGGATATTCTTCATGT+TGG | + | chr2_1:18178072-18178091 | Msa0199290:intron | 30.0% | |
| ATTTCAGGAACTTTATGAGA+TGG | + | chr2_1:18178293-18178312 | Msa0199290:CDS | 30.0% | |
| ATTATTAATCCAAGCATGGA+TGG | - | chr2_1:18178478-18178497 | None:intergenic | 30.0% | |
| AATTCTCTTCCTTGTGAAAT+GGG | - | chr2_1:18178548-18178567 | None:intergenic | 30.0% | |
| AAATTCTCTTCCTTGTGAAA+TGG | - | chr2_1:18178549-18178568 | None:intergenic | 30.0% | |
| !!! | TTTTCAGAAGGTTAGTTTCA+TGG | + | chr2_1:18178611-18178630 | Msa0199290:CDS | 30.0% |
| AATTATAGTTACCCTCTGAT+GGG | - | chr2_1:18178788-18178807 | None:intergenic | 30.0% | |
| AAATTATAGTTACCCTCTGA+TGG | - | chr2_1:18178789-18178808 | None:intergenic | 30.0% | |
| !!! | AGCAGCTTGATTCTTATTTT+TGG | - | chr2_1:18179036-18179055 | None:intergenic | 30.0% |
| AATAAGAATCAAGCTGCTAA+TGG | + | chr2_1:18179038-18179057 | Msa0199290:CDS | 30.0% | |
| !! | TTTGGTTCAATTTCCGTTTT+CGG | + | chr2_1:18179355-18179374 | Msa0199290:three_prime_UTR | 30.0% |
| GCAGCTAAAGTTATCATTGA+AGG | - | chr2_1:18173221-18173240 | None:intergenic | 35.0% | |
| !!! | TGTTTTTGAGTGTTGTGAAG+TGG | - | chr2_1:18173349-18173368 | None:intergenic | 35.0% |
| TACCTCAATTCAACTGTGAA+AGG | + | chr2_1:18173406-18173425 | Msa0199290:five_prime_UTR | 35.0% | |
| TACCTTTCACAGTTGAATTG+AGG | - | chr2_1:18173411-18173430 | None:intergenic | 35.0% | |
| TTGGGAATCGAAAATTGGAT+CGG | - | chr2_1:18173519-18173538 | None:intergenic | 35.0% | |
| CTATGAAATCGAAGGAGATT+GGG | - | chr2_1:18173537-18173556 | None:intergenic | 35.0% | |
| ACTATGAAATCGAAGGAGAT+TGG | - | chr2_1:18173538-18173557 | None:intergenic | 35.0% | |
| AAGGTCAACTATGAAATCGA+AGG | - | chr2_1:18173545-18173564 | None:intergenic | 35.0% | |
| AACAAAACCTAGGGATTGAA+AGG | - | chr2_1:18173564-18173583 | None:intergenic | 35.0% | |
| TAACCTTGTAAGAGGTTGTT+CGG | + | chr2_1:18174048-18174067 | Msa0199290:five_prime_UTR | 35.0% | |
| CGTATAAGGAACTATAGGAA+TGG | - | chr2_1:18174150-18174169 | None:intergenic | 35.0% | |
| GATAACAAAGTTATGTCGTG+CGG | + | chr2_1:18174169-18174188 | Msa0199290:CDS | 35.0% | |
| TACTCCTATCTGTGTGTTTA+TGG | + | chr2_1:18174287-18174306 | Msa0199290:intron | 35.0% | |
| GAATCCATAAACACACAGAT+AGG | - | chr2_1:18174294-18174313 | None:intergenic | 35.0% | |
| ACTTGACATTGTTACTGCTT+TGG | + | chr2_1:18174423-18174442 | Msa0199290:CDS | 35.0% | |
| CTTGACATTGTTACTGCTTT+GGG | + | chr2_1:18174424-18174443 | Msa0199290:CDS | 35.0% | |
| ! | AGTATTCTTGGATTAGAACC+TGG | + | chr2_1:18174676-18174695 | Msa0199290:CDS | 35.0% |
| ACTTAGGAAAAGGACAGATT+GGG | - | chr2_1:18175077-18175096 | None:intergenic | 35.0% | |
| CAGAATTCTGACTTAGGAAA+AGG | - | chr2_1:18175087-18175106 | None:intergenic | 35.0% | |
| GACTAACAGAATTCTGACTT+AGG | - | chr2_1:18175093-18175112 | None:intergenic | 35.0% | |
| GAATTCAGTTAGTAGCTGTT+AGG | + | chr2_1:18175165-18175184 | Msa0199290:intron | 35.0% | |
| CTGTTAGGAATTCAGTTAGA+AGG | + | chr2_1:18175180-18175199 | Msa0199290:intron | 35.0% | |
| ! | AATCCAAAGTAAGAGTACAG+TGG | - | chr2_1:18175235-18175254 | None:intergenic | 35.0% |
| TAGAAAGTAAGGGAAAGTGA+AGG | - | chr2_1:18175278-18175297 | None:intergenic | 35.0% | |
| TCTGATAGTTTACATTCTGG+TGG | + | chr2_1:18175310-18175329 | Msa0199290:intron | 35.0% | |
| CTGATAGTTTACATTCTGGT+GGG | + | chr2_1:18175311-18175330 | Msa0199290:intron | 35.0% | |
| TGATAGTTTACATTCTGGTG+GGG | + | chr2_1:18175312-18175331 | Msa0199290:intron | 35.0% | |
| TATTTGCATTCTCTTGCCAT+TGG | + | chr2_1:18175443-18175462 | Msa0199290:CDS | 35.0% | |
| TTGATGCATCACATAGTTTC+CGG | - | chr2_1:18175508-18175527 | None:intergenic | 35.0% | |
| TTACTTCATGAAGCCTTCTT+TGG | + | chr2_1:18175545-18175564 | Msa0199290:CDS | 35.0% | |
| TGCACAAGAAATATACCTAG+GGG | - | chr2_1:18175571-18175590 | None:intergenic | 35.0% | |
| TAAGATACCTTAACTAGTGC+AGG | - | chr2_1:18175845-18175864 | None:intergenic | 35.0% | |
| ! | AAGGTATCTTATTGTATGGC+AGG | + | chr2_1:18175854-18175873 | Msa0199290:intron | 35.0% |
| CCGTCTAAAAGAAAATAGCA+TGG | - | chr2_1:18175962-18175981 | None:intergenic | 35.0% | |
| ! | CTGAAATCACTTGCTAAAGA+TGG | - | chr2_1:18176032-18176051 | None:intergenic | 35.0% |
| CTTTAGCAAGTGATTTCAGA+CGG | + | chr2_1:18176033-18176052 | Msa0199290:CDS | 35.0% | |
| !! | AAGTGATTTCAGACGGATTT+TGG | + | chr2_1:18176040-18176059 | Msa0199290:CDS | 35.0% |
| ! | ACTATTTCTCTTCTGCTTCT+TGG | + | chr2_1:18176109-18176128 | Msa0199290:intron | 35.0% |
| AAAATAGGGTGCAGACTAAA+GGG | - | chr2_1:18176176-18176195 | None:intergenic | 35.0% | |
| TGCAGTGATTTAGTATGCAT+TGG | - | chr2_1:18176266-18176285 | None:intergenic | 35.0% | |
| TTTAAATTGGATCCAGGCAT+GGG | - | chr2_1:18176293-18176312 | None:intergenic | 35.0% | |
| ATAATCCACATGCTTCCTTA+AGG | - | chr2_1:18176476-18176495 | None:intergenic | 35.0% | |
| ATGTATTGGAAGTTGGAACA+TGG | + | chr2_1:18176517-18176536 | Msa0199290:intron | 35.0% | |
| GCAGTCTCAGTAATTCAATA+AGG | - | chr2_1:18176798-18176817 | None:intergenic | 35.0% | |
| TGTGGTTATCATCTTAGCTT+CGG | - | chr2_1:18176835-18176854 | None:intergenic | 35.0% | |
| GTCATCATTGTCTTATGTGA+TGG | + | chr2_1:18176901-18176920 | Msa0199290:intron | 35.0% | |
| ACTAGCGCATTAAACAATGA+GGG | - | chr2_1:18176983-18177002 | None:intergenic | 35.0% | |
| AAAAGATGGCAGTTATACCA+CGG | + | chr2_1:18177009-18177028 | Msa0199290:intron | 35.0% | |
| !! | GAAAGAAAGTATCAGAGAAG+GGG | - | chr2_1:18177159-18177178 | None:intergenic | 35.0% |
| ATCAAGACCATTATTCAAGG+AGG | + | chr2_1:18177309-18177328 | Msa0199290:intron | 35.0% | |
| TCAAGACCATTATTCAAGGA+GGG | + | chr2_1:18177310-18177329 | Msa0199290:intron | 35.0% | |
| TATTGACCCTCCTTGAATAA+TGG | - | chr2_1:18177319-18177338 | None:intergenic | 35.0% | |
| ATAGGAGAAGCTTTCATCAT+AGG | + | chr2_1:18177378-18177397 | Msa0199290:intron | 35.0% | |
| GAAGCTTTCATCATAGGATA+CGG | + | chr2_1:18177384-18177403 | Msa0199290:intron | 35.0% | |
| !! | TAAGAACCAAAAGGTACCAA+AGG | - | chr2_1:18177503-18177522 | None:intergenic | 35.0% |
| GCATCAGAATAAGAACCAAA+AGG | - | chr2_1:18177512-18177531 | None:intergenic | 35.0% | |
| ! | GTTCTTATTCTGATGCCTTT+TGG | + | chr2_1:18177516-18177535 | Msa0199290:intron | 35.0% |
| ! | CTAGAATGCTTTGTTGAACA+AGG | - | chr2_1:18177655-18177674 | None:intergenic | 35.0% |
| ACAACAGACTCAGTAATATG+GGG | - | chr2_1:18177840-18177859 | None:intergenic | 35.0% | |
| TACTGAGTCTGTTGTTAAGA+AGG | + | chr2_1:18177845-18177864 | Msa0199290:CDS | 35.0% | |
| GCGTTAAAACACTGTACATA+TGG | + | chr2_1:18177881-18177900 | Msa0199290:intron | 35.0% | |
| TACATCGTCTAATGTTCTTG+AGG | + | chr2_1:18177954-18177973 | Msa0199290:intron | 35.0% | |
| ACATCGTCTAATGTTCTTGA+GGG | + | chr2_1:18177955-18177974 | Msa0199290:intron | 35.0% | |
| AGTAGCTAGCTAACTACAAT+TGG | - | chr2_1:18178024-18178043 | None:intergenic | 35.0% | |
| TGGATCCAGTACCATATATA+CGG | + | chr2_1:18178047-18178066 | Msa0199290:intron | 35.0% | |
| !! | ATTCTTCATGTTGGTTCTAG+CGG | + | chr2_1:18178081-18178100 | Msa0199290:intron | 35.0% |
| TTATGTGAAAATGCCACAGT+TGG | + | chr2_1:18178116-18178135 | Msa0199290:intron | 35.0% | |
| CTGCATAGGAAGAAGAAAAA+TGG | - | chr2_1:18178262-18178281 | None:intergenic | 35.0% | |
| ! | TTTTCTTCTTCCTATGCAGA+AGG | + | chr2_1:18178263-18178282 | Msa0199290:intron | 35.0% |
| AATGTTCTTACCTTCTGCAT+AGG | - | chr2_1:18178276-18178295 | None:intergenic | 35.0% | |
| AGTCTCACATGTTACATCAA+GGG | - | chr2_1:18178418-18178437 | None:intergenic | 35.0% | |
| TTCACAAGGAAGAGAATTTC+TGG | + | chr2_1:18178550-18178569 | Msa0199290:CDS | 35.0% | |
| !!! | GAATTTCTGGTTTTTGCTTG+CGG | + | chr2_1:18178563-18178582 | Msa0199290:CDS | 35.0% |
| ATTCTGTTTCGAACAATGTG+TGG | + | chr2_1:18178586-18178605 | Msa0199290:CDS | 35.0% | |
| !!! | CAATGTGTGGTTTTTTCAGA+AGG | + | chr2_1:18178599-18178618 | Msa0199290:CDS | 35.0% |
| !! | AAGGTTAGTTTCATGGATGA+AGG | + | chr2_1:18178618-18178637 | Msa0199290:CDS | 35.0% |
| TAAGGCAATTGCAGAATCTA+AGG | + | chr2_1:18178662-18178681 | Msa0199290:CDS | 35.0% | |
| ATTATAGTTACCCTCTGATG+GGG | - | chr2_1:18178787-18178806 | None:intergenic | 35.0% | |
| !!! | TCAAAGTTTTGAAACGAACC+CGG | + | chr2_1:18178868-18178887 | Msa0199290:CDS | 35.0% |
| !!! | AGCTTCGCCATTTTTATTTG+TGG | - | chr2_1:18179066-18179085 | None:intergenic | 35.0% |
| CGAACAAAAAGATGAGAGTA+TGG | - | chr2_1:18179156-18179175 | None:intergenic | 35.0% | |
| ! | TCTCATCTTTTTGTTCGTCT+TGG | + | chr2_1:18179159-18179178 | Msa0199290:three_prime_UTR | 35.0% |
| ! | ATCTTTTTGTTCGTCTTGGT+TGG | + | chr2_1:18179163-18179182 | Msa0199290:three_prime_UTR | 35.0% |
| GTCCATCTTAGTTTATCTGT+TGG | + | chr2_1:18179220-18179239 | Msa0199290:three_prime_UTR | 35.0% | |
| GTCCAACAGATAAACTAAGA+TGG | - | chr2_1:18179225-18179244 | None:intergenic | 35.0% | |
| TGTTGGACTACTTTCATACT+TGG | + | chr2_1:18179237-18179256 | Msa0199290:three_prime_UTR | 35.0% | |
| GGAGATTGGGAATCGAAAAT+TGG | - | chr2_1:18173524-18173543 | None:intergenic | 40.0% | |
| TAGTTGACCTTTCAATCCCT+AGG | + | chr2_1:18173554-18173573 | Msa0199290:intron | 40.0% | |
| !! | ACTTGGATTGGGTTTTCAAC+AGG | + | chr2_1:18173864-18173883 | Msa0199290:intron | 40.0% |
| !! | CTTGGATTGGGTTTTCAACA+GGG | + | chr2_1:18173865-18173884 | Msa0199290:intron | 40.0% |
| GTACTGAAGATTAGTGACGA+TGG | + | chr2_1:18174070-18174089 | Msa0199290:exon | 40.0% | |
| ACCGCAAATCCATCTTTCAA+AGG | + | chr2_1:18174252-18174271 | Msa0199290:CDS | 40.0% | |
| ! | CCCTTTGAAAGATGGATTTG+CGG | - | chr2_1:18174256-18174275 | None:intergenic | 40.0% |
| CCGCAAATCCATCTTTCAAA+GGG | + | chr2_1:18174253-18174272 | Msa0199290:CDS | 40.0% | |
| ! | TGATCTCACCCTTTGAAAGA+TGG | - | chr2_1:18174264-18174283 | None:intergenic | 40.0% |
| TTATTTGCCGTGTGTTCGAA+TGG | + | chr2_1:18174590-18174609 | Msa0199290:intron | 40.0% | |
| TATTTGCCGTGTGTTCGAAT+GGG | + | chr2_1:18174591-18174610 | Msa0199290:intron | 40.0% | |
| ! | GGTCTGGATTTTTATCAGGA+TGG | - | chr2_1:18174753-18174772 | None:intergenic | 40.0% |
| ! | TCGTAATTTTCACGAGCTAC+TGG | - | chr2_1:18174939-18174958 | None:intergenic | 40.0% |
| TTTATTACCTGTCTGCCATC+AGG | - | chr2_1:18174975-18174994 | None:intergenic | 40.0% | |
| ! | TCTGCTTTGTATTTGGAGCT+GGG | + | chr2_1:18175045-18175064 | Msa0199290:intron | 40.0% |
| GACTTAGGAAAAGGACAGAT+TGG | - | chr2_1:18175078-18175097 | None:intergenic | 40.0% | |
| ACACCACTGTACTCTTACTT+TGG | + | chr2_1:18175229-18175248 | Msa0199290:intron | 40.0% | |
| ATGCCCCATCAATATTCAGA+AGG | - | chr2_1:18175392-18175411 | None:intergenic | 40.0% | |
| TAGACAACAGCAATGACCAA+TGG | - | chr2_1:18175462-18175481 | None:intergenic | 40.0% | |
| AGTCATGGATGTCTTCACAA+AGG | + | chr2_1:18175682-18175701 | Msa0199290:CDS | 40.0% | |
| ACATGGAAATTCCAGTTCGA+AGG | + | chr2_1:18175714-18175733 | Msa0199290:CDS | 40.0% | |
| ! | CTTCTGAAGAGGTTCATCAT+CGG | - | chr2_1:18175741-18175760 | None:intergenic | 40.0% |
| GCTCTTGCTTAATGTTCTTG+AGG | - | chr2_1:18175799-18175818 | None:intergenic | 40.0% | |
| CAAGAACATTAAGCAAGAGC+AGG | + | chr2_1:18175799-18175818 | Msa0199290:CDS | 40.0% | |
| CAAAATAGGGTGCAGACTAA+AGG | - | chr2_1:18176177-18176196 | None:intergenic | 40.0% | |
| GTTTAAATTGGATCCAGGCA+TGG | - | chr2_1:18176294-18176313 | None:intergenic | 40.0% | |
| CAGTGATAGAAAGCAGTCAA+TGG | + | chr2_1:18176369-18176388 | Msa0199290:intron | 40.0% | |
| TTTCATATCAACCCACACAC+AGG | - | chr2_1:18176751-18176770 | None:intergenic | 40.0% | |
| GACTAGCGCATTAAACAATG+AGG | - | chr2_1:18176984-18177003 | None:intergenic | 40.0% | |
| ! | GCGCTAGTCTCTATAAAAGA+TGG | + | chr2_1:18176995-18177014 | Msa0199290:intron | 40.0% |
| GCTTTCTCAATGTATCATCC+AGG | + | chr2_1:18177079-18177098 | Msa0199290:CDS | 40.0% | |
| TCAACAGTTTCCTTTGTCTC+TGG | + | chr2_1:18177273-18177292 | Msa0199290:intron | 40.0% | |
| ! | TGGTTTCCTTTGGTACCTTT+TGG | + | chr2_1:18177494-18177513 | Msa0199290:intron | 40.0% |
| GTTAAGGATGAAAAGCTGTC+TGG | + | chr2_1:18177568-18177587 | Msa0199290:intron | 40.0% | |
| TGATTTATGACCTCCTATGC+AGG | + | chr2_1:18177746-18177765 | Msa0199290:intron | 40.0% | |
| TGAGTCTGTTGTTAAGAAGG+TGG | + | chr2_1:18177848-18177867 | Msa0199290:CDS | 40.0% | |
| !!! | AGTGTTTTAACGCACCTTAC+GGG | - | chr2_1:18177874-18177893 | None:intergenic | 40.0% |
| !!! | CAGTGTTTTAACGCACCTTA+CGG | - | chr2_1:18177875-18177894 | None:intergenic | 40.0% |
| ! | TAGACACAAGCATTTAGAGC+AGG | - | chr2_1:18177916-18177935 | None:intergenic | 40.0% |
| TCATGAGCATGGGATCAAAT+TGG | - | chr2_1:18178219-18178238 | None:intergenic | 40.0% | |
| GCAGAAGGTAAGAACATTTC+AGG | + | chr2_1:18178278-18178297 | Msa0199290:intron | 40.0% | |
| ! | ACTTTATGAGATGGACTCAC+AGG | + | chr2_1:18178302-18178321 | Msa0199290:CDS | 40.0% |
| AGCTACTTACTCAAACAGCA+GGG | + | chr2_1:18178334-18178353 | Msa0199290:CDS | 40.0% | |
| ACATGTTACATCAAGGGTCA+AGG | - | chr2_1:18178412-18178431 | None:intergenic | 40.0% | |
| CAGTCTCACATGTTACATCA+AGG | - | chr2_1:18178419-18178438 | None:intergenic | 40.0% | |
| GATGTAACATGTGAGACTGA+AGG | + | chr2_1:18178420-18178439 | Msa0199290:CDS | 40.0% | |
| ACATTGTTACCATCCATGCT+TGG | + | chr2_1:18178466-18178485 | Msa0199290:CDS | 40.0% | |
| GCAATTGCAGAATCTAAGGA+GGG | + | chr2_1:18178666-18178685 | Msa0199290:CDS | 40.0% | |
| !!! | CAAAGTTTTGAAACGAACCC+GGG | + | chr2_1:18178869-18178888 | Msa0199290:CDS | 40.0% |
| ATCTCATTCTTCATCAGAGC+CGG | - | chr2_1:18179099-18179118 | None:intergenic | 40.0% | |
| !! | AACTTAGAAGCGTCCGAAAA+CGG | - | chr2_1:18179371-18179390 | None:intergenic | 40.0% |
| GTACCGAACAACCTCTTACA+AGG | - | chr2_1:18174054-18174073 | None:intergenic | 45.0% | |
| CTGAAGATTAGTGACGATGG+CGG | + | chr2_1:18174073-18174092 | Msa0199290:exon | 45.0% | |
| ! | CCTGGGTCTGGATTTTTATC+AGG | - | chr2_1:18174757-18174776 | None:intergenic | 45.0% |
| CCTGATAAAAATCCAGACCC+AGG | + | chr2_1:18174754-18174773 | Msa0199290:CDS | 45.0% | |
| ACGAGAAACGTCTTCAACCT+GGG | - | chr2_1:18174774-18174793 | None:intergenic | 45.0% | |
| AACGAGAAACGTCTTCAACC+TGG | - | chr2_1:18174775-18174794 | None:intergenic | 45.0% | |
| CTTTGTCGAGCACATTGCTA+AGG | + | chr2_1:18174893-18174912 | Msa0199290:CDS | 45.0% | |
| GAGAAATATGGCCATCCTGA+TGG | + | chr2_1:18174957-18174976 | Msa0199290:CDS | 45.0% | |
| ! | GTCTGCTTTGTATTTGGAGC+TGG | + | chr2_1:18175044-18175063 | Msa0199290:intron | 45.0% |
| ! | TTGTATTTGGAGCTGGGCTT+TGG | + | chr2_1:18175051-18175070 | Msa0199290:intron | 45.0% |
| TTACATTCTGGTGGGGTATG+TGG | + | chr2_1:18175319-18175338 | Msa0199290:intron | 45.0% | |
| ! | CTGAATATTGATGGGGCATC+TGG | + | chr2_1:18175393-18175412 | Msa0199290:CDS | 45.0% |
| ! | AATATTGATGGGGCATCTGG+TGG | + | chr2_1:18175396-18175415 | Msa0199290:CDS | 45.0% |
| ! | ATATTGATGGGGCATCTGGT+GGG | + | chr2_1:18175397-18175416 | Msa0199290:CDS | 45.0% |
| ! | CTGGTGGGATACTTTTGCTT+TGG | + | chr2_1:18175412-18175431 | Msa0199290:CDS | 45.0% |
| ATATACCTAGGGGCCAAAGA+AGG | - | chr2_1:18175561-18175580 | None:intergenic | 45.0% | |
| CACAAAGGCTGCTGAATACA+TGG | + | chr2_1:18175697-18175716 | Msa0199290:CDS | 45.0% | |
| ! | AGGATGCTGCTTCCAAAACT+TGG | - | chr2_1:18175825-18175844 | None:intergenic | 45.0% |
| !! | GCTCAGTTGACTCGTGAATT+TGG | + | chr2_1:18175996-18176015 | Msa0199290:CDS | 45.0% |
| AAAGCAGTCAATGGCTGAAG+TGG | + | chr2_1:18176378-18176397 | Msa0199290:intron | 45.0% | |
| ! | AAACGCCTTAAGGAAGCATG+TGG | + | chr2_1:18176468-18176487 | Msa0199290:intron | 45.0% |
| TATCAACCCACACACAGGAA+TGG | - | chr2_1:18176746-18176765 | None:intergenic | 45.0% | |
| AGTTATACCACGGAATGCTC+AGG | + | chr2_1:18177019-18177038 | Msa0199290:CDS | 45.0% | |
| GTTATACCACGGAATGCTCA+GGG | + | chr2_1:18177020-18177039 | Msa0199290:CDS | 45.0% | |
| TTTGTGGTGATACCCTGATC+TGG | + | chr2_1:18177119-18177138 | Msa0199290:intron | 45.0% | |
| TTGTGGTGATACCCTGATCT+GGG | + | chr2_1:18177120-18177139 | Msa0199290:intron | 45.0% | |
| TACGTGCAGCATAACCCAAA+AGG | - | chr2_1:18177534-18177553 | None:intergenic | 45.0% | |
| !! | GTAGTTTTTCTAGCACCGAG+AGG | - | chr2_1:18177777-18177796 | None:intergenic | 45.0% |
| !! | CTCGGTGCTAGAAAAACTAC+CGG | + | chr2_1:18177777-18177796 | Msa0199290:CDS | 45.0% |
| AGAAATGGTGCAATGCCTTC+AGG | - | chr2_1:18177810-18177829 | None:intergenic | 45.0% | |
| GTAGTTAGCTAGCTACTCGT+TGG | + | chr2_1:18178027-18178046 | Msa0199290:intron | 45.0% | |
| GAGCTACTTACTCAAACAGC+AGG | + | chr2_1:18178333-18178352 | Msa0199290:CDS | 45.0% | |
| !! | TCAAGGAAGGCATCATATCG+AGG | - | chr2_1:18178395-18178414 | None:intergenic | 45.0% |
| GTTACATCAAGGGTCAAGGA+AGG | - | chr2_1:18178408-18178427 | None:intergenic | 45.0% | |
| ATGTGAGACTGAAGGAGAAG+AGG | + | chr2_1:18178428-18178447 | Msa0199290:CDS | 45.0% | |
| TGTGAGACTGAAGGAGAAGA+GGG | + | chr2_1:18178429-18178448 | Msa0199290:CDS | 45.0% | |
| ! | GGAGAAGAGGGTATACAAGA+AGG | + | chr2_1:18178441-18178460 | Msa0199290:CDS | 45.0% |
| CTTGTGAAATGGGTAGTGAG+GGG | - | chr2_1:18178538-18178557 | None:intergenic | 45.0% | |
| CCTTGTGAAATGGGTAGTGA+GGG | - | chr2_1:18178539-18178558 | None:intergenic | 45.0% | |
| TCCTTGTGAAATGGGTAGTG+AGG | - | chr2_1:18178540-18178559 | None:intergenic | 45.0% | |
| ! | TGCTGTAACTGCTGCTTCTA+AGG | + | chr2_1:18178644-18178663 | Msa0199290:CDS | 45.0% |
| GGCAATTGCAGAATCTAAGG+AGG | + | chr2_1:18178665-18178684 | Msa0199290:CDS | 45.0% | |
| ! | GGGGGATCTAGATTGGTAAT+GGG | + | chr2_1:18178750-18178769 | Msa0199290:CDS | 45.0% |
| !! | ATTGGTAATGGGCAAGTTCC+AGG | + | chr2_1:18178761-18178780 | Msa0199290:CDS | 45.0% |
| GCTATTGTTTGTGCGACTCT+TGG | + | chr2_1:18178814-18178833 | Msa0199290:CDS | 45.0% | |
| TTGTTTGTGCGACTCTTGGT+TGG | + | chr2_1:18178818-18178837 | Msa0199290:CDS | 45.0% | |
| TGTTTGTGCGACTCTTGGTT+GGG | + | chr2_1:18178819-18178838 | Msa0199290:CDS | 45.0% | |
| TCAACTCCATCCTCCATGAT+AGG | - | chr2_1:18178930-18178949 | None:intergenic | 45.0% | |
| TATCATGGAGGATGGAGTTG+AGG | + | chr2_1:18178929-18178948 | Msa0199290:CDS | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTGA+CGG | - | chr2_1:18173287-18173306 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAAAGAAA+AGG | + | chr2_1:18173299-18173318 | Msa0199290:five_prime_UTR | 5.0% |
| !! | AAAAAAAAAAAAAAAGAAAA+GGG | + | chr2_1:18173300-18173319 | Msa0199290:five_prime_UTR | 5.0% |
| !! | TAAATTATAATTGTTTAAAT+TGG | - | chr2_1:18176306-18176325 | None:intergenic | 5.0% |
| ! | ATTAGTGACGATGGCGGCTT+CGG | + | chr2_1:18174079-18174098 | Msa0199290:exon | 50.0% |
| TGCAATGACTGCTCTCGATC+AGG | + | chr2_1:18174224-18174243 | Msa0199290:CDS | 50.0% | |
| GCAATGACTGCTCTCGATCA+GGG | + | chr2_1:18174225-18174244 | Msa0199290:CDS | 50.0% | |
| CCACATCCCATTCGAACACA+CGG | - | chr2_1:18174600-18174619 | None:intergenic | 50.0% | |
| ATTTCAGACTCTGCTGCTCC+AGG | - | chr2_1:18174697-18174716 | None:intergenic | 50.0% | |
| AAACGTCTTCAACCTGGGTC+TGG | - | chr2_1:18174769-18174788 | None:intergenic | 50.0% | |
| TTACCTGTCTGCCATCAGGA+TGG | - | chr2_1:18174971-18174990 | None:intergenic | 50.0% | |
| TCATCATCGGTCCTTCGAAC+TGG | - | chr2_1:18175728-18175747 | None:intergenic | 50.0% | |
| ! | AGCAAGAGCAGGCCAAGTTT+TGG | + | chr2_1:18175810-18175829 | Msa0199290:CDS | 50.0% |
| GCAGCATCCTGCACTAGTTA+AGG | + | chr2_1:18175835-18175854 | Msa0199290:CDS | 50.0% | |
| ! | CCTTCATTAGCTCTTCGAGC+AGG | - | chr2_1:18176079-18176098 | None:intergenic | 50.0% |
| CCTGCTCGAAGAGCTAATGA+AGG | + | chr2_1:18176076-18176095 | Msa0199290:CDS | 50.0% | |
| AACAGGCTGAACTGCACTTG+CGG | + | chr2_1:18176716-18176735 | Msa0199290:intron | 50.0% | |
| GGTAAGCCATTCCTGTGTGT+GGG | + | chr2_1:18176737-18176756 | Msa0199290:intron | 50.0% | |
| GTGATACCCTGATCTGGGAA+CGG | + | chr2_1:18177125-18177144 | Msa0199290:intron | 50.0% | |
| TTTGCACCGTTCCCAGATCA+GGG | - | chr2_1:18177134-18177153 | None:intergenic | 50.0% | |
| ATTTGCACCGTTCCCAGATC+AGG | - | chr2_1:18177135-18177154 | None:intergenic | 50.0% | |
| GGTGCTAGAAAAACTACCGG+TGG | + | chr2_1:18177780-18177799 | Msa0199290:CDS | 50.0% | |
| AATGCCTTCAGGTGATCCAC+CGG | - | chr2_1:18177799-18177818 | None:intergenic | 50.0% | |
| ATATGGGGCAGCTGCAGAAA+TGG | - | chr2_1:18177825-18177844 | None:intergenic | 50.0% | |
| TGTTAAGAAGGTGGCCCGTA+AGG | + | chr2_1:18177857-18177876 | Msa0199290:CDS | 50.0% | |
| GCCATCAGTCACAACACTGT+GGG | - | chr2_1:18178142-18178161 | None:intergenic | 50.0% | |
| AGCCATCAGTCACAACACTG+TGG | - | chr2_1:18178143-18178162 | None:intergenic | 50.0% | |
| GATCCCATGCTCATGACTGT+CGG | + | chr2_1:18178223-18178242 | Msa0199290:intron | 50.0% | |
| CTTCCGACAGTCATGAGCAT+GGG | - | chr2_1:18178229-18178248 | None:intergenic | 50.0% | |
| ACTTCCGACAGTCATGAGCA+TGG | - | chr2_1:18178230-18178249 | None:intergenic | 50.0% | |
| TGCTCATGACTGTCGGAAGT+TGG | + | chr2_1:18178230-18178249 | Msa0199290:intron | 50.0% | |
| ! | AAGGGGTAATGGCCTGATTG+CGG | + | chr2_1:18178500-18178519 | Msa0199290:CDS | 50.0% |
| ! | AAATGGGTAGTGAGGGGCAT+GGG | - | chr2_1:18178532-18178551 | None:intergenic | 50.0% |
| CCCTCACTACCCATTTCACA+AGG | + | chr2_1:18178536-18178555 | Msa0199290:CDS | 50.0% | |
| GCAGAATCTAAGGAGGGTTC+CGG | + | chr2_1:18178672-18178691 | Msa0199290:CDS | 50.0% | |
| ! | ACTGCCTTACTGGTCTCCTT+CGG | - | chr2_1:18178705-18178724 | None:intergenic | 50.0% |
| CTTCACCTTCTCCACTGCTT+CGG | - | chr2_1:18178730-18178749 | None:intergenic | 50.0% | |
| GAAGCAGTGGAGAAGGTGAA+GGG | + | chr2_1:18178729-18178748 | Msa0199290:CDS | 50.0% | |
| AAGCAGTGGAGAAGGTGAAG+GGG | + | chr2_1:18178730-18178749 | Msa0199290:CDS | 50.0% | |
| GGGGGGATCTAGATTGGTAA+TGG | + | chr2_1:18178749-18178768 | Msa0199290:CDS | 50.0% | |
| !!! | GGTGCTGTTTTGGCTGATGA+GGG | + | chr2_1:18178903-18178922 | Msa0199290:CDS | 50.0% |
| TGATGAGGGACCTATCATGG+AGG | + | chr2_1:18178917-18178936 | Msa0199290:CDS | 50.0% | |
| TGAGGAGGATGAGGACAATG+AGG | + | chr2_1:18178947-18178966 | Msa0199290:CDS | 50.0% | |
| GGATGAGGACAATGAGGATG+AGG | + | chr2_1:18178953-18178972 | Msa0199290:CDS | 50.0% | |
| CCGTGTGTTCGAATGGGATG+TGG | + | chr2_1:18174597-18174616 | Msa0199290:intron | 55.0% | |
| TGAAGCCTTCTTTGGCCCCT+AGG | + | chr2_1:18175553-18175572 | Msa0199290:CDS | 55.0% | |
| ! | ATTAGCTCTTCGAGCAGGCG+AGG | - | chr2_1:18176074-18176093 | None:intergenic | 55.0% |
| TCACTGCATGTACCCATGCC+TGG | + | chr2_1:18176278-18176297 | Msa0199290:intron | 55.0% | |
| CGGTAAGCCATTCCTGTGTG+TGG | + | chr2_1:18176736-18176755 | Msa0199290:intron | 55.0% | |
| CACGGAATGCTCAGGGACAT+GGG | + | chr2_1:18177027-18177046 | Msa0199290:CDS | 55.0% | |
| AGAGGAACAGCCTGCATAGG+AGG | - | chr2_1:18177759-18177778 | None:intergenic | 55.0% | |
| CCTATGCAGGCTGTTCCTCT+CGG | + | chr2_1:18177759-18177778 | Msa0199290:intron | 55.0% | |
| ACTACCGGTGGATCACCTGA+AGG | + | chr2_1:18177792-18177811 | Msa0199290:CDS | 55.0% | |
| ACAACACTGTGGGCCAACTG+TGG | - | chr2_1:18178132-18178151 | None:intergenic | 55.0% | |
| GCCCACAGTGTTGTGACTGA+TGG | + | chr2_1:18178138-18178157 | Msa0199290:intron | 55.0% | |
| ! | AATGGGTAGTGAGGGGCATG+GGG | - | chr2_1:18178531-18178550 | None:intergenic | 55.0% |
| GAAATGGGTAGTGAGGGGCA+TGG | - | chr2_1:18178533-18178552 | None:intergenic | 55.0% | |
| AAGCCCGAAGGAGACCAGTA+AGG | + | chr2_1:18178698-18178717 | Msa0199290:CDS | 55.0% | |
| ! | CTGCCTTACTGGTCTCCTTC+GGG | - | chr2_1:18178704-18178723 | None:intergenic | 55.0% |
| TGCTTCGGCAACTGCCTTAC+TGG | - | chr2_1:18178715-18178734 | None:intergenic | 55.0% | |
| TAAGGCAGTTGCCGAAGCAG+TGG | + | chr2_1:18178716-18178735 | Msa0199290:CDS | 55.0% | |
| AGTTGCCGAAGCAGTGGAGA+AGG | + | chr2_1:18178722-18178741 | Msa0199290:CDS | 55.0% | |
| CGAAGCAGTGGAGAAGGTGA+AGG | + | chr2_1:18178728-18178747 | Msa0199290:CDS | 55.0% | |
| AGCAGTGGAGAAGGTGAAGG+GGG | + | chr2_1:18178731-18178750 | Msa0199290:CDS | 55.0% | |
| GGTGAAGGGGGGATCTAGAT+TGG | + | chr2_1:18178743-18178762 | Msa0199290:CDS | 55.0% | |
| AAGTTCCAGGCCCCATCAGA+GGG | + | chr2_1:18178774-18178793 | Msa0199290:CDS | 55.0% | |
| ACTCTTGGTTGGGCTGTGAC+AGG | + | chr2_1:18178829-18178848 | Msa0199290:CDS | 55.0% | |
| !!! | GTTTTGAAACGAACCCGGGC+TGG | + | chr2_1:18178873-18178892 | Msa0199290:CDS | 55.0% |
| !!! | TGGCACTAGGGGTGCTGTTT+TGG | + | chr2_1:18178893-18178912 | Msa0199290:CDS | 55.0% |
| !!! | GGGTGCTGTTTTGGCTGATG+AGG | + | chr2_1:18178902-18178921 | Msa0199290:CDS | 55.0% |
| GGCTGATGAGGGACCTATCA+TGG | + | chr2_1:18178914-18178933 | Msa0199290:CDS | 55.0% | |
| GAGGGACCTATCATGGAGGA+TGG | + | chr2_1:18178921-18178940 | Msa0199290:CDS | 55.0% | |
| CATGGAGGATGGAGTTGAGG+AGG | + | chr2_1:18178932-18178951 | Msa0199290:CDS | 55.0% | |
| GGATGGAGTTGAGGAGGATG+AGG | + | chr2_1:18178938-18178957 | Msa0199290:CDS | 55.0% | |
| GGCGAAGCTGCTGAAAGTTC+CGG | + | chr2_1:18179077-18179096 | Msa0199290:CDS | 55.0% | |
| TGGCCATCCTGATGGCAGAC+AGG | + | chr2_1:18174965-18174984 | Msa0199290:CDS | 60.0% | |
| CCATGTCCCTGAGCATTCCG+TGG | - | chr2_1:18177029-18177048 | None:intergenic | 60.0% | |
| CCACGGAATGCTCAGGGACA+TGG | + | chr2_1:18177026-18177045 | Msa0199290:CDS | 60.0% | |
| GGAATGCTCAGGGACATGGG+TGG | + | chr2_1:18177030-18177049 | Msa0199290:CDS | 60.0% | |
| AGCTCAACCACACCGATCGC+AGG | - | chr2_1:18177062-18177081 | None:intergenic | 60.0% | |
| CCGAGAGGAACAGCCTGCAT+AGG | - | chr2_1:18177762-18177781 | None:intergenic | 60.0% | |
| ! | GTAGTGAGGGGCATGGGGAA+GGG | - | chr2_1:18178526-18178545 | None:intergenic | 60.0% |
| GCAGTGGAGAAGGTGAAGGG+GGG | + | chr2_1:18178732-18178751 | Msa0199290:CDS | 60.0% | |
| CAAGTTCCAGGCCCCATCAG+AGG | + | chr2_1:18178773-18178792 | Msa0199290:CDS | 60.0% | |
| AGTTACCCTCTGATGGGGCC+TGG | - | chr2_1:18178782-18178801 | None:intergenic | 60.0% | |
| ! | AGTGACGATGGCGGCTTCGG+AGG | + | chr2_1:18174082-18174101 | Msa0199290:exon | 65.0% |
| GGGTGGCTGAGACCTGCGAT+CGG | + | chr2_1:18177047-18177066 | Msa0199290:CDS | 65.0% | |
| GCTGAGACCTGCGATCGGTG+TGG | + | chr2_1:18177052-18177071 | Msa0199290:CDS | 65.0% | |
| CATGGGGAAGGGCCGCAATC+AGG | - | chr2_1:18178515-18178534 | None:intergenic | 65.0% | |
| ! | GGTAGTGAGGGGCATGGGGA+AGG | - | chr2_1:18178527-18178546 | None:intergenic | 65.0% |
| ! | GGTCTCCTTCGGGCTTGCTC+CGG | - | chr2_1:18178694-18178713 | None:intergenic | 65.0% |
| !! | AACGAACCCGGGCTGGCACT+AGG | + | chr2_1:18178880-18178899 | Msa0199290:CDS | 65.0% |
| !! | ACGAACCCGGGCTGGCACTA+GGG | + | chr2_1:18178881-18178900 | Msa0199290:CDS | 65.0% |
| GGGTTCCGGAGCAAGCCCGA+AGG | + | chr2_1:18178686-18178705 | Msa0199290:CDS | 70.0% | |
| !! | CGAACCCGGGCTGGCACTAG+GGG | + | chr2_1:18178882-18178901 | Msa0199290:CDS | 70.0% |
| AGCACCCCTAGTGCCAGCCC+GGG | - | chr2_1:18178889-18178908 | None:intergenic | 70.0% | |
| CAGCACCCCTAGTGCCAGCC+CGG | - | chr2_1:18178890-18178909 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 18173218 | 18179423 | 18173218 | ID=Msa0199290;Name=Msa0199290 |
| chr2_1 | mRNA | 18173218 | 18179423 | 18173218 | ID=Msa0199290-mRNA-1;Parent=Msa0199290;Name=Msa0199290-mRNA-1;_AED=0.16;_eAED=0.16;_QI=259|1|1|1|0.9|0.81|11|308|685 |
| chr2_1 | exon | 18173218 | 18173427 | 18173218 | ID=Msa0199290-mRNA-1:exon:7660;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18174040 | 18174274 | 18174040 | ID=Msa0199290-mRNA-1:exon:7661;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18174398 | 18174493 | 18174398 | ID=Msa0199290-mRNA-1:exon:7662;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18174655 | 18174775 | 18174655 | ID=Msa0199290-mRNA-1:exon:7663;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18174880 | 18174986 | 18174880 | ID=Msa0199290-mRNA-1:exon:7664;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18175357 | 18175574 | 18175357 | ID=Msa0199290-mRNA-1:exon:7665;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18175679 | 18175856 | 18175679 | ID=Msa0199290-mRNA-1:exon:7666;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18175978 | 18176097 | 18175978 | ID=Msa0199290-mRNA-1:exon:7667;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18177014 | 18177100 | 18177014 | ID=Msa0199290-mRNA-1:exon:7668;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18177768 | 18177878 | 18177768 | ID=Msa0199290-mRNA-1:exon:7669;Parent=Msa0199290-mRNA-1 |
| chr2_1 | exon | 18178282 | 18179423 | 18178282 | ID=Msa0199290-mRNA-1:exon:7670;Parent=Msa0199290-mRNA-1 |
| chr2_1 | five_prime_UTR | 18173218 | 18173427 | 18173218 | ID=Msa0199290-mRNA-1:five_prime_utr;Parent=Msa0199290-mRNA-1 |
| chr2_1 | five_prime_UTR | 18174040 | 18174088 | 18174040 | ID=Msa0199290-mRNA-1:five_prime_utr;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18174089 | 18174274 | 18174089 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18174398 | 18174493 | 18174398 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18174655 | 18174775 | 18174655 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18174880 | 18174986 | 18174880 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18175357 | 18175574 | 18175357 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18175679 | 18175856 | 18175679 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18175978 | 18176097 | 18175978 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18177014 | 18177100 | 18177014 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18177768 | 18177878 | 18177768 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | CDS | 18178282 | 18179115 | 18178282 | ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1 |
| chr2_1 | three_prime_UTR | 18179116 | 18179423 | 18179116 | ID=Msa0199290-mRNA-1:three_prime_utr;Parent=Msa0199290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
