AlfalfaGEDB | Msa0199290

M. sativa cultivar zhongmu-4 / Msa0199290

KEGG: K09540
GO: GO:0001655 GO:0001889 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0010259 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048513 GO:0048731 GO:0048732 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061008 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071944 GO:0072001 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098827
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199290	XP_024632012.2	99.124	685	6	0	1	685	1	685	0.0	1418

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199290	sp\|Q0WT48\|DNJ21_ARATH	78.880	625	131	1	1	625	1	624	0.0	1069

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199290	A0A396JBB3	99.124	685	6	0	1	685	1	685	0.0	1418

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0120880	Msa0199290	0.814341	1.618751e-51	-8.615850e-47
Msa0199290	Msa0450400	-0.814118	1.813308e-51	-8.615850e-47
Msa0199290	Msa0702720	0.802682	4.995478e-49	-8.615850e-47
Msa0199290	Msa0958000	0.832042	1.184398e-55	-8.615850e-47
Msa0199290	Msa1434100	0.809538	1.801243e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199290	MtrunA17_Chr2g0301881	99.124	685	6	0	1	685	1	685	0.0	1418
Msa0199290	MtrunA17_Chr2g0312441	23.711	388	215	12	223	606	1869	2179	4.51e-21	99.0
Msa0199290	MtrunA17_Chr4g0003841	24.044	366	197	13	245	606	1845	2133	1.10e-17	88.2
Msa0199290	MtrunA17_Chr7g0242951	35.849	106	61	2	68	173	2	100	4.45e-14	75.5
Msa0199290	MtrunA17_Chr1g0206121	43.820	89	48	2	80	167	16	103	1.43e-13	72.0
Msa0199290	MtrunA17_Chr7g0269841	46.575	73	37	2	93	164	20	91	1.46e-11	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199290	AT1G79940.2	78.880	625	131	1	1	625	1	624	0.0	1069
Msa0199290	AT1G79940.3	78.880	625	131	1	1	625	1	624	0.0	1069
Msa0199290	AT1G79940.1	78.880	625	131	1	1	625	1	624	0.0	1069
Msa0199290	AT1G79940.4	79.181	562	117	0	1	562	1	562	0.0	963
Msa0199290	AT4G21180.1	67.921	611	190	3	1	611	1	605	0.0	889
Msa0199290	AT4G21180.2	68.362	531	162	3	81	611	1	525	0.0	775
Msa0199290	AT1G20960.1	25.945	397	212	13	223	615	1850	2168	2.91e-23	106
Msa0199290	AT1G20960.2	25.945	397	212	13	223	615	1850	2168	2.91e-23	106
Msa0199290	AT3G08970.1	42.308	78	44	1	99	176	27	103	9.94e-13	71.6
Msa0199290	AT3G08970.2	42.308	78	44	1	99	176	27	103	9.94e-13	71.6

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Find 190 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGGCAGTTATACCA+CGG	0.676825	2_1:+18177009	Msa0199290:intron
AAACGTCTTCAACCTGGGTC+TGG	0.414315	2_1:-18174766	None:intergenic
AAATGGGTAGTGAGGGGCAT+GGG	0.401841	2_1:-18178529	None:intergenic
AAATTATAGTTACCCTCTGA+TGG	0.507044	2_1:-18178786	None:intergenic
AAATTCTCTTCCTTGTGAAA+TGG	0.342000	2_1:-18178546	None:intergenic
AACAACAGACTCAGTAATAT+GGG	0.413471	2_1:-18177838	None:intergenic
AACGAACCCGGGCTGGCACT+AGG	0.440580	2_1:+18178880	Msa0199290:CDS
AACTTAGAAGCGTCCGAAAA+CGG	0.430251	2_1:-18179368	None:intergenic
AAGCAGTGGAGAAGGTGAAG+GGG	0.593292	2_1:+18178730	Msa0199290:CDS
AAGCCCGAAGGAGACCAGTA+AGG	0.539611	2_1:+18178698	Msa0199290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATAGTAGAAACAAAACCT+AGG	-	chr2_1:18173574-18173593	None:intergenic	30.0%
GTTATCGTATAAGGAACTAT+AGG	-	chr2_1:18174155-18174174	None:intergenic	30.0%
TTGGGTGATTATGATTATTC+TGG	+	chr2_1:18174442-18174461	Msa0199290:CDS	30.0%
CATAAAATCTATGAGTAGTG+AGG	+	chr2_1:18174472-18174491	Msa0199290:CDS	30.0%
CTAAATTGAAATCTCATGCA+GGG	-	chr2_1:18174533-18174552	None:intergenic	30.0%
ACTAAATTGAAATCTCATGC+AGG	-	chr2_1:18174534-18174553	None:intergenic	30.0%
TTTGATGCTTGCAAGAAAAT+GGG	+	chr2_1:18174804-18174823	Msa0199290:intron	30.0%
CGTGAAAATTACGAGAAATA+TGG	+	chr2_1:18174945-18174964	Msa0199290:CDS	30.0%
CTGAAATGCATAGAAAGTAA+GGG	-	chr2_1:18175288-18175307	None:intergenic	30.0%
ACTGAAATGCATAGAAAGTA+AGG	-	chr2_1:18175289-18175308	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	18173218	18179423	18173218	ID=Msa0199290;Name=Msa0199290
chr2_1	mRNA	18173218	18179423	18173218	ID=Msa0199290-mRNA-1;Parent=Msa0199290;Name=Msa0199290-mRNA-1;_AED=0.16;_eAED=0.16;_QI=259\|1\|1\|1\|0.9\|0.81\|11\|308\|685
chr2_1	exon	18173218	18173427	18173218	ID=Msa0199290-mRNA-1:exon:7660;Parent=Msa0199290-mRNA-1
chr2_1	exon	18174040	18174274	18174040	ID=Msa0199290-mRNA-1:exon:7661;Parent=Msa0199290-mRNA-1
chr2_1	exon	18174398	18174493	18174398	ID=Msa0199290-mRNA-1:exon:7662;Parent=Msa0199290-mRNA-1
chr2_1	exon	18174655	18174775	18174655	ID=Msa0199290-mRNA-1:exon:7663;Parent=Msa0199290-mRNA-1
chr2_1	exon	18174880	18174986	18174880	ID=Msa0199290-mRNA-1:exon:7664;Parent=Msa0199290-mRNA-1
chr2_1	exon	18175357	18175574	18175357	ID=Msa0199290-mRNA-1:exon:7665;Parent=Msa0199290-mRNA-1
chr2_1	exon	18175679	18175856	18175679	ID=Msa0199290-mRNA-1:exon:7666;Parent=Msa0199290-mRNA-1
chr2_1	exon	18175978	18176097	18175978	ID=Msa0199290-mRNA-1:exon:7667;Parent=Msa0199290-mRNA-1
chr2_1	exon	18177014	18177100	18177014	ID=Msa0199290-mRNA-1:exon:7668;Parent=Msa0199290-mRNA-1
chr2_1	exon	18177768	18177878	18177768	ID=Msa0199290-mRNA-1:exon:7669;Parent=Msa0199290-mRNA-1
chr2_1	exon	18178282	18179423	18178282	ID=Msa0199290-mRNA-1:exon:7670;Parent=Msa0199290-mRNA-1
chr2_1	five_prime_UTR	18173218	18173427	18173218	ID=Msa0199290-mRNA-1:five_prime_utr;Parent=Msa0199290-mRNA-1
chr2_1	five_prime_UTR	18174040	18174088	18174040	ID=Msa0199290-mRNA-1:five_prime_utr;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18174089	18174274	18174089	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18174398	18174493	18174398	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18174655	18174775	18174655	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18174880	18174986	18174880	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18175357	18175574	18175357	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18175679	18175856	18175679	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18175978	18176097	18175978	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18177014	18177100	18177014	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18177768	18177878	18177768	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	CDS	18178282	18179115	18178282	ID=Msa0199290-mRNA-1:cds;Parent=Msa0199290-mRNA-1
chr2_1	three_prime_UTR	18179116	18179423	18179116	ID=Msa0199290-mRNA-1:three_prime_utr;Parent=Msa0199290-mRNA-1

Gene Sequence

>Msa0199290

ATGGCGGCTTCGGAGGAGACAAGTGCATTGTTCCCAATTTTCATATTGACAATAATGGCCATTCCTATAGTTCCTTATACGATAACAAAGTTATGTCGTGCGGCTTCTAAGAAATCGAAGAGCATTCACTGTCAGTGCAATGACTGCTCTCGATCAGGGAAGTACCGCAAATCCATCTTTCAAAGGATTTCAAATGTCTCGACGTATAATAACTTGACATTGTTACTGCTTTGGGTGATTATGATTATTCTGGTTTATTACATAAAATCTATGAGTAGTGAGATCACAGTTTTTGATCCATTTAGTATTCTTGGATTAGAACCTGGAGCAGCAGAGTCTGAAATAAAGAAAAAATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCAGACCCAGAGGCACACAAGTACTTTGTCGAGCACATTGCTAAGGCTTATCAAGCTCTGACTGATCCAGTAGCTCGTGAAAATTACGAGAAATATGGCCATCCTGATGGCAGACAGGGATTTCAAATGGGTATAGCTCTCCCTCAATTCCTTCTGAATATTGATGGGGCATCTGGTGGGATACTTTTGCTTTGGATTGTTGGTATTTGCATTCTCTTGCCATTGGTCATTGCTGTTGTCTATCTCTCAAGATCATCAAAGTATACCGGAAACTATGTGATGCATCAAACACTTTCCACTTACTATTACTTCATGAAGCCTTCTTTGGCCCCTAGCAAAGTCATGGATGTCTTCACAAAGGCTGCTGAATACATGGAAATTCCAGTTCGAAGGACCGATGATGAACCTCTTCAGAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAGAACATTAAGCAAGAGCAGGCCAAGTTTTGGAAGCAGCATCCTGCACTAGTTAAGACGGAGCTGTTAGTTCAAGCTCAGTTGACTCGTGAATTTGGAGCGTTGTCTCCATCTTTAGCAAGTGATTTCAGACGGATTTTGGAAACAGCACCTCGCCTGCTCGAAGAGCTAATGAAGATGGCAGTTATACCACGGAATGCTCAGGGACATGGGTGGCTGAGACCTGCGATCGGTGTGGTTGAGCTTTCTCAATGTATCATCCAGGCTGTTCCTCTCGGTGCTAGAAAAACTACCGGTGGATCACCTGAAGGCATTGCACCATTTCTGCAGCTGCCCCATATTACTGAGTCTGTTGTTAAGAAGGTGGCCCGTAAGAAGGTAAGAACATTTCAGGAACTTTATGAGATGGACTCACAGGAGCGAGCTGAGCTACTTACTCAAACAGCAGGGTTATCTTCTGAAGAAGTACAAGACGTTCAGATTGTCCTCGATATGATGCCTTCCTTGACCCTTGATGTAACATGTGAGACTGAAGGAGAAGAGGGTATACAAGAAGGTGACATTGTTACCATCCATGCTTGGATTAATAATAAAAGGGGTAATGGCCTGATTGCGGCCCTTCCCCATGCCCCTCACTACCCATTTCACAAGGAAGAGAATTTCTGGTTTTTGCTTGCGGATTCTGTTTCGAACAATGTGTGGTTTTTTCAGAAGGTTAGTTTCATGGATGAAGGTGCTGCTGTAACTGCTGCTTCTAAGGCAATTGCAGAATCTAAGGAGGGTTCCGGAGCAAGCCCGAAGGAGACCAGTAAGGCAGTTGCCGAAGCAGTGGAGAAGGTGAAGGGGGGATCTAGATTGGTAATGGGCAAGTTCCAGGCCCCATCAGAGGGTAACTATAATTTGACTTGCTATTGTTTGTGCGACTCTTGGTTGGGCTGTGACAGGAAGACAAATATAAAGTTCAAAGTTTTGAAACGAACCCGGGCTGGCACTAGGGGTGCTGTTTTGGCTGATGAGGGACCTATCATGGAGGATGGAGTTGAGGAGGATGAGGACAATGAGGATGAGGAGTATGATGACGACTACGAGAGTGAGTATAGTGAAGATGAAGAAGATGATAAAAACTCCAAAAATAAGAATCAAGCTGCTAATGGAACCACAAATAAAAATGGCGAAGCTGCTGAAAGTTCCGGCTCTGATGAAGAATGA

Protein sequence

>Msa0199290

MAASEETSALFPIFILTIMAIPIVPYTITKLCRAASKKSKSIHCQCNDCSRSGKYRKSIFQRISNVSTYNNLTLLLLWVIMIILVYYIKSMSSEITVFDPFSILGLEPGAAESEIKKKYRRLSIQYHPDKNPDPEAHKYFVEHIAKAYQALTDPVARENYEKYGHPDGRQGFQMGIALPQFLLNIDGASGGILLLWIVGICILLPLVIAVVYLSRSSKYTGNYVMHQTLSTYYYFMKPSLAPSKVMDVFTKAAEYMEIPVRRTDDEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPALVKTELLVQAQLTREFGALSPSLASDFRRILETAPRLLEELMKMAVIPRNAQGHGWLRPAIGVVELSQCIIQAVPLGARKTTGGSPEGIAPFLQLPHITESVVKKVARKKVRTFQELYEMDSQERAELLTQTAGLSSEEVQDVQIVLDMMPSLTLDVTCETEGEEGIQEGDIVTIHAWINNKRGNGLIAALPHAPHYPFHKEENFWFLLADSVSNNVWFFQKVSFMDEGAAVTAASKAIAESKEGSGASPKETSKAVAEAVEKVKGGSRLVMGKFQAPSEGNYNLTCYCLCDSWLGCDRKTNIKFKVLKRTRAGTRGAVLADEGPIMEDGVEEDEDNEDEEYDDDYESEYSEDEEDDKNSKNKNQAANGTTNKNGEAAESSGSDEE*