AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0702720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702720 MtrunA17_Chr8g0380651 92.926 622 5 3 1 616 1 589 0.0 1162
Msa0702720 MtrunA17_Chr2g0277491 84.628 605 52 4 18 616 14 583 0.0 958
Msa0702720 MtrunA17_Chr5g0434001 39.658 585 327 8 48 616 33 607 4.23e-151 449
Msa0702720 MtrunA17_Chr8g0375501 39.792 578 323 7 54 616 24 591 3.76e-145 433
Msa0702720 MtrunA17_Chr6g0480551 38.648 577 330 7 54 616 22 588 1.75e-141 423
Msa0702720 MtrunA17_Chr8g0342031 33.333 618 337 9 60 616 45 648 1.31e-111 348
Msa0702720 MtrunA17_Chr1g0150181 33.495 618 336 10 60 616 34 637 1.98e-107 337
Msa0702720 MtrunA17_Chr3g0136881 32.630 616 340 8 62 616 35 636 4.27e-103 326
Msa0702720 MtrunA17_Chr4g0026371 33.622 577 347 11 59 616 30 589 1.01e-98 313
Msa0702720 MtrunA17_Chr4g0065301 29.577 639 352 18 60 616 34 656 1.29e-76 256
Msa0702720 MtrunA17_Chr5g0448371 30.455 637 348 19 60 616 44 665 5.02e-74 249
Msa0702720 MtrunA17_Chr3g0120461 29.513 637 354 20 60 616 38 659 1.57e-69 238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702720 AT1G10950.1 82.479 605 65 4 18 616 20 589 0.0 953
Msa0702720 AT5G37310.1 39.897 584 320 10 51 616 23 593 2.30e-145 434
Msa0702720 AT5G37310.2 39.897 584 320 10 51 616 23 593 2.30e-145 434
Msa0702720 AT2G01970.1 39.446 578 325 8 54 616 25 592 4.00e-145 433
Msa0702720 AT1G14670.1 40.311 578 320 8 54 616 25 592 1.93e-141 424
Msa0702720 AT1G08350.3 35.714 574 339 10 60 616 29 589 1.02e-116 360
Msa0702720 AT1G08350.2 35.714 574 339 10 60 616 29 589 1.02e-116 360
Msa0702720 AT3G13772.1 33.655 621 331 11 60 616 38 641 2.60e-112 350
Msa0702720 AT1G55130.1 33.172 618 338 11 60 616 34 637 6.22e-109 341
Msa0702720 AT2G24170.1 32.848 618 340 9 60 616 34 637 2.39e-104 329
Msa0702720 AT5G25100.1 31.833 622 344 9 60 616 38 644 9.47e-101 320
Msa0702720 AT5G10840.1 31.341 619 349 8 60 616 44 648 4.62e-100 318
Msa0702720 AT5G25100.2 32.039 618 340 9 64 616 49 651 7.95e-100 318
Msa0702720 AT1G08350.4 34.791 526 304 10 60 568 29 532 7.12e-98 309
Msa0702720 AT1G08350.1 33.977 518 315 9 116 616 1 508 2.75e-97 307
Msa0702720 AT5G35160.1 34.783 460 275 11 165 616 188 630 3.87e-70 239
Msa0702720 AT5G35160.2 34.783 460 275 11 165 616 216 658 1.05e-69 238
Msa0702720 AT5G35160.3 34.783 460 275 11 165 616 216 658 1.05e-69 238
Msa0702720 AT5G35160.4 34.783 460 275 11 165 616 216 658 1.05e-69 238
Msa0702720 AT4G12650.1 29.967 614 336 17 83 616 53 652 6.38e-67 231
Msa0702720 AT2G24170.2 28.774 424 228 9 60 422 34 444 1.02e-47 174

Find 190 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTCTTGGTGAGGTTC+TGG 0.126257 4_4:-74483544 Msa0702720:CDS
TTCCAAACCAGCTTCTATTT+TGG 0.163890 4_4:-74479556 Msa0702720:CDS
TCTTTCCCTCTTGCACTTCT+TGG 0.167961 4_4:-74480173 Msa0702720:CDS
AACACTATTGCTATATTCTA+TGG 0.173192 4_4:-74480257 Msa0702720:CDS
TGGGTAAATAAATATTAATT+AGG 0.173320 4_4:+74485385 None:intergenic
TTTACACGACATGGATTATT+TGG 0.174871 4_4:+74480119 None:intergenic
GCTCTCACATCGTTCATTTC+TGG 0.180300 4_4:-74480501 Msa0702720:CDS
GGTTCTTCTTGTCATCTTAC+TGG 0.189220 4_4:-74480779 Msa0702720:CDS
GAATATAGCAATAGTGTTTA+AGG 0.196614 4_4:+74480262 None:intergenic
GTCATCTTACTGGCTATTAT+TGG 0.221951 4_4:-74480769 Msa0702720:CDS
GTTTCATCCCTTTATAAAAT+AGG 0.231371 4_4:-74479054 Msa0702720:three_prime_UTR
CCATTATCGCTATGCTTATC+AGG 0.233882 4_4:+74481588 None:intergenic
AGAAACATCAAGTGTGATTA+AGG 0.235735 4_4:-74479313 Msa0702720:exon
ATGATGGTCATCTTCCTTAC+TGG 0.240228 4_4:-74481115 Msa0702720:CDS
ATTATTGGGATGTTGTATAT+TGG 0.240380 4_4:-74480754 Msa0702720:CDS
TGTTTCTTGTGGATTGTTAT+AGG 0.255200 4_4:+74483629 None:intergenic
CCATTCATGTGCTTTGGAAT+TGG 0.255297 4_4:-74480290 Msa0702720:CDS
TTAGGAACTTGATCTCAATT+TGG 0.256416 4_4:+74483499 None:intergenic
TTTCCTGCCTCCACAGGCTT+TGG 0.257862 4_4:+74481394 None:intergenic
TTCCTGCCTCCACAGGCTTT+GGG 0.275232 4_4:+74481395 None:intergenic
GATCCTTCTCACAAACAAAT+TGG 0.295137 4_4:+74479339 None:intergenic
GTTCCTACTAATATCACTTT+TGG 0.301532 4_4:-74481340 Msa0702720:CDS
TTATTCCCATTCATGTGCTT+TGG 0.303113 4_4:-74480296 Msa0702720:CDS
TGCTGGAGACAATAAATTCT+TGG 0.310005 4_4:-74479253 Msa0702720:three_prime_UTR
TTATTGGGATGTTGTATATT+GGG 0.315812 4_4:-74480753 Msa0702720:intron
GTACTAGATGGGTGGCAAAA+TGG 0.317512 4_4:+74483588 None:intergenic
CATCATGAAAGAGTTGAAAA+TGG 0.317773 4_4:+74481132 None:intergenic
CCTGATAAGCATAGCGATAA+TGG 0.322031 4_4:-74481588 Msa0702720:CDS
TCATCTTACTGGCTATTATT+GGG 0.322850 4_4:-74480768 Msa0702720:CDS
GGGTAAATAAATATTAATTA+GGG 0.324557 4_4:+74485386 None:intergenic
GGTGGTCTTGGTGAGGTTCT+GGG 0.343914 4_4:-74483543 Msa0702720:CDS
TTGTTCACCCAAAGGTTAAC+AGG 0.344271 4_4:+74483660 None:intergenic
GTACAGTTGTTGGAAGAAAC+TGG 0.348979 4_4:-74480151 Msa0702720:CDS
GTTTCTTGTGGATTGTTATA+GGG 0.350260 4_4:+74483630 None:intergenic
CAGGTAGAATCACAGGGTTT+TGG 0.358097 4_4:-74479189 Msa0702720:three_prime_UTR
TTCTACCTGTAAACATTGTT+AGG 0.362610 4_4:+74479203 None:intergenic
ATTTGACATATTCTGTCAAA+TGG 0.363074 4_4:-74481363 Msa0702720:CDS
CTTCTACTGCTGCACACAAA+TGG 0.372102 4_4:-74483566 Msa0702720:CDS
GGAAGAAGATGGATCGGGAT+TGG 0.374431 4_4:+74485201 None:intergenic
TTCTACTGCTGCACACAAAT+GGG 0.377902 4_4:-74483565 Msa0702720:CDS
TGCTCGGGAAGATGATGATT+TGG 0.381303 4_4:-74481041 Msa0702720:CDS
TTTACATTACATTGGATAGT+TGG 0.384243 4_4:+74478983 None:intergenic
TACTAGATGGGTGGCAAAAT+GGG 0.386783 4_4:+74483589 None:intergenic
ATGCAATAGAGAATAATTAC+TGG 0.388926 4_4:-74483327 Msa0702720:CDS
GGGATGATCCTGTTAACCTT+TGG 0.390319 4_4:-74483668 Msa0702720:CDS
GCACTTCTTGGTACAGTTGT+TGG 0.394046 4_4:-74480161 Msa0702720:CDS
GGATGATCCTGTTAACCTTT+GGG 0.395177 4_4:-74483667 Msa0702720:CDS
TCTCTAGCTGCTATCCCATT+TGG 0.398262 4_4:-74480233 Msa0702720:CDS
TGGTGATGGATGGGTTGAAT+TGG 0.402266 4_4:+74485234 None:intergenic
CACTTCCATAGGCTTGTTGC+TGG 0.402858 4_4:-74479270 Msa0702720:three_prime_UTR
ATCCAAAATAGAAGCTGGTT+TGG 0.403813 4_4:+74479554 None:intergenic
ACAACCACCATTGTGCCAAA+TGG 0.406323 4_4:+74480218 None:intergenic
ACCTTCAGTGGTTTCTCTGA+TGG 0.407419 4_4:-74480054 Msa0702720:CDS
TCATTTCTGGTTATGTGAGT+GGG 0.411230 4_4:-74480488 Msa0702720:CDS
TGTGTATGGCTTTATGCTAC+TGG 0.413075 4_4:-74479758 Msa0702720:CDS
TTGGAAGGACATGGTGGTGA+TGG 0.417335 4_4:+74485220 None:intergenic
TGTGGAGGCAGGAAAACATT+TGG 0.417528 4_4:-74481386 Msa0702720:CDS
AGGTGCTCAGCTAGCACTGC+TGG 0.423568 4_4:-74480800 Msa0702720:CDS
TTTCTGTCTCATAGATTCAC+TGG 0.423593 4_4:-74481159 Msa0702720:intron
GGTCATCTTCCTTACTGGAT+TGG 0.423761 4_4:-74481110 Msa0702720:CDS
TTCAGGAAATGTGGATAAAA+CGG 0.424085 4_4:-74483398 Msa0702720:intron
ATGGGAGGACTGCTCCCCTT+TGG 0.425866 4_4:-74480035 Msa0702720:CDS
GGGAACCTAACAATGTTTAC+AGG 0.428040 4_4:-74479208 Msa0702720:three_prime_UTR
CAACCACCATTGTGCCAAAT+GGG 0.431622 4_4:+74480219 None:intergenic
TTGGAACTTGAAACCATGTT+GGG 0.433221 4_4:+74479002 None:intergenic
AGAAGAGGAAGAAGATGGAT+CGG 0.438159 4_4:+74485195 None:intergenic
TTTAATGTTTAAGGATATGT+TGG 0.444357 4_4:-74481621 Msa0702720:intron
CCAATTCCAAAGCACATGAA+TGG 0.445296 4_4:+74480290 None:intergenic
GTTATTCTTTCAGCTGTAGT+TGG 0.446425 4_4:-74480826 Msa0702720:CDS
AAGGACATGGTGGTGATGGA+TGG 0.449505 4_4:+74485224 None:intergenic
CTTTCAGCTGTAGTTGGCAC+AGG 0.449731 4_4:-74480820 Msa0702720:CDS
CTGTTTGTGTGACAATTGTC+GGG 0.453788 4_4:-74479711 Msa0702720:CDS
CTATCCTTTCTTTGAGCACC+AGG 0.454485 4_4:-74481293 Msa0702720:intron
GCAGCAGTAGAAGTACTAGA+TGG 0.454588 4_4:+74483576 None:intergenic
GGGGATGTACTCACGAAATG+GGG 0.455052 4_4:-74480466 Msa0702720:CDS
ATTAGACATAAGTCCTTCAA+TGG 0.458310 4_4:+74479027 None:intergenic
CCTTCAGTGGTTTCTCTGAT+GGG 0.459448 4_4:-74480053 Msa0702720:CDS
TACCACTTCTTCTCAGGAAT+GGG 0.459819 4_4:+74480083 None:intergenic
GCACACAAATGGGGTGGTCT+TGG 0.464078 4_4:-74483555 Msa0702720:CDS
TGTTAAATACAATAATGATC+AGG 0.464103 4_4:-74481532 Msa0702720:intron
TTTGCATGTTAGGTAAAAGC+TGG 0.464576 4_4:-74480346 Msa0702720:intron
AGATGATGATTTGGAATCTC+TGG 0.464901 4_4:-74481032 Msa0702720:CDS
AACCTTTGGGTGAACAAAGT+TGG 0.465024 4_4:-74483654 Msa0702720:CDS
GTCCCAAAGCCTGTGGAGGC+AGG 0.466032 4_4:-74481397 Msa0702720:CDS
GAAGAGGAAGAAGATGGATC+GGG 0.467833 4_4:+74485196 None:intergenic
TTCAATAAATATGCTGCCAA+AGG 0.469394 4_4:+74480019 None:intergenic
AAATGAAGAGAGAGAAGAAG+AGG 0.470429 4_4:+74485180 None:intergenic
TTCCCCTCTTTACATTACAT+TGG 0.470748 4_4:+74478975 None:intergenic
TTTGACATATTCTGTCAAAT+GGG 0.471266 4_4:-74481362 Msa0702720:CDS
ACTGTTTGTGTGACAATTGT+CGG 0.474263 4_4:-74479712 Msa0702720:CDS
AGGACATGGTGGTGATGGAT+GGG 0.474995 4_4:+74485225 None:intergenic
AGAGACGTTAGTGAAGAATC+TGG 0.475065 4_4:-74480895 Msa0702720:CDS
GTGAGGTACCACTTCTTCTC+AGG 0.480937 4_4:+74480077 None:intergenic
TACGTGAAGACAAAGATGTC+AGG 0.484733 4_4:-74479583 Msa0702720:CDS
CGTCCAAAAGTGATATTAGT+AGG 0.488108 4_4:+74481337 None:intergenic
CAATTCCAAAGCACATGAAT+GGG 0.488664 4_4:+74480291 None:intergenic
TCAATAAATATGCTGCCAAA+GGG 0.491052 4_4:+74480020 None:intergenic
AGAGAAGAAGAGGAAGAAGA+TGG 0.491368 4_4:+74485190 None:intergenic
TAAAGAAGCTGTAAGGATCA+TGG 0.491490 4_4:+74480316 None:intergenic
TGTCTCCAGCAACAAGCCTA+TGG 0.499255 4_4:+74479265 None:intergenic
AAATTCTTGGAGGAAGCCTC+TGG 0.502558 4_4:-74479240 Msa0702720:three_prime_UTR
GTTCCAATTTGTTTGTGAGA+AGG 0.502663 4_4:-74479342 Msa0702720:CDS
CTTGGACTAGGAATTCTTTG+CGG 0.503085 4_4:-74479514 Msa0702720:intron
TTCATTTCTGGTTATGTGAG+TGG 0.508011 4_4:-74480489 Msa0702720:CDS
TACTCTTATTTCAGGAAATG+TGG 0.511703 4_4:-74483407 Msa0702720:intron
ATGTTTACAGGTAGAATCAC+AGG 0.511994 4_4:-74479196 Msa0702720:three_prime_UTR
ACACTATTGCTATATTCTAT+GGG 0.513070 4_4:-74480256 Msa0702720:CDS
TTAGACATAAGTCCTTCAAT+GGG 0.514965 4_4:+74479028 None:intergenic
TATCCAATGTAATGTAAAGA+GGG 0.515433 4_4:-74478978 Msa0702720:three_prime_UTR
TAATAATTGTATGTTTCTTG+TGG 0.516387 4_4:+74483618 None:intergenic
TAAAATAGGAGCCCCATTGA+AGG 0.517565 4_4:-74479040 Msa0702720:three_prime_UTR
ATGACTATGCAAAATATGCT+CGG 0.518614 4_4:-74481057 Msa0702720:CDS
TAATATTCTTGTGTGTGTAA+AGG 0.519006 4_4:+74481556 None:intergenic
GAAGAGTGGAAAAGAAGGTA+AGG 0.521099 4_4:+74485357 None:intergenic
TACTTCCTTCTGGAATTACA+AGG 0.524010 4_4:-74479982 Msa0702720:intron
ATTTCTGGTTATGTGAGTGG+GGG 0.527049 4_4:-74480486 Msa0702720:CDS
TAAAGACAGTCAATTACAGC+CGG 0.528111 4_4:+74479115 None:intergenic
TGTACCTGGTGCTCAAAGAA+AGG 0.529220 4_4:+74481289 None:intergenic
CGTTGTTGAAGATTGAAGAG+TGG 0.530294 4_4:+74485343 None:intergenic
AGGAAGCCTCTGGTCATGTG+TGG 0.531037 4_4:-74479230 Msa0702720:three_prime_UTR
TTGCATCATCAAGATCCATC+TGG 0.532224 4_4:+74483368 None:intergenic
ACGCCGCTTTGATGTCTACC+TGG 0.532449 4_4:-74481317 Msa0702720:CDS
GGGATGTACTCACGAAATGG+GGG 0.532731 4_4:-74480465 Msa0702720:intron
GAAGATGGATCGGGATTGGA+AGG 0.534872 4_4:+74485205 None:intergenic
TGACTATGCAAAATATGCTC+GGG 0.538507 4_4:-74481056 Msa0702720:CDS
TGCTATCCCATTTGGCACAA+TGG 0.538975 4_4:-74480225 Msa0702720:CDS
CTGAGAACTACCACTGGCAA+TGG 0.539560 4_4:-74479669 Msa0702720:CDS
CTATCCAATGTAATGTAAAG+AGG 0.539597 4_4:-74478979 Msa0702720:three_prime_UTR
GTACCACTTCTTCTCAGGAA+TGG 0.539757 4_4:+74480082 None:intergenic
TGGAGACAATAAATTCTTGG+AGG 0.539868 4_4:-74479250 Msa0702720:three_prime_UTR
GTTGGAACTTGAAACCATGT+TGG 0.540361 4_4:+74479001 None:intergenic
ATGGGAATAAAGAAGCTGTA+AGG 0.542673 4_4:+74480309 None:intergenic
AGATTGAAGAGTGGAAAAGA+AGG 0.543101 4_4:+74485352 None:intergenic
CGCTTCAGAATCAGATCACA+AGG 0.545253 4_4:-74485147 Msa0702720:intron
AGTGTATCCAAAATAGAAGC+TGG 0.550003 4_4:+74479549 None:intergenic
TTCTTCTCAGGAATGGGACG+AGG 0.550039 4_4:+74480089 None:intergenic
TTCCAATGTGCAGGAGCTGT+AGG 0.552065 4_4:-74479373 Msa0702720:intron
GGAAGCCTCTGGTCATGTGT+GGG 0.556186 4_4:-74479229 Msa0702720:three_prime_UTR
AAAGACAGTCAATTACAGCC+GGG 0.559382 4_4:+74479116 None:intergenic
CATTTCTGGTTATGTGAGTG+GGG 0.564790 4_4:-74480487 Msa0702720:CDS
ACGTTAGTGAAGAATCTGGC+TGG 0.566054 4_4:-74480891 Msa0702720:CDS
AAACAGGTGTACTATGTGTA+TGG 0.567409 4_4:-74479772 Msa0702720:intron
GTCCAACTTTGTTCACCCAA+AGG 0.569033 4_4:+74483652 None:intergenic
TTTCTGGTTATGTGAGTGGG+GGG 0.572386 4_4:-74480485 Msa0702720:CDS
TCAAACCGGAGCACTTCCAT+AGG 0.574233 4_4:-74479281 Msa0702720:three_prime_UTR
GTCCCATTCCTGAGAAGAAG+TGG 0.575509 4_4:-74480085 Msa0702720:CDS
TCAGTGGTTTCTCTGATGGG+AGG 0.576830 4_4:-74480050 Msa0702720:CDS
GTGGTACCTCACACCTTCAG+TGG 0.581121 4_4:-74480066 Msa0702720:CDS
GTGATCTGATTCTGAAGCGA+AGG 0.581572 4_4:+74485151 None:intergenic
CAGCAGTAGAAGTACTAGAT+GGG 0.584920 4_4:+74483577 None:intergenic
ACAAGCCTATGGAAGTGCTC+CGG 0.585518 4_4:+74479276 None:intergenic
GAGAGCATAACAAACAATGA+AGG 0.589483 4_4:+74480518 None:intergenic
TCATTGATACCAATCCAGTA+AGG 0.604552 4_4:+74481101 None:intergenic
GCTCAAAGAAAGGATAGTCC+AGG 0.607444 4_4:+74481299 None:intergenic
ATACACATAAACTGATGTTG+AGG 0.610091 4_4:+74479627 None:intergenic
GTTCACCTTGTAATTCCAGA+AGG 0.615446 4_4:+74479977 None:intergenic
GATGGATCTTGATGATGCAA+AGG 0.617807 4_4:-74483365 Msa0702720:CDS
ACGTGAAGACAAAGATGTCA+GGG 0.618435 4_4:-74479582 Msa0702720:CDS
TTATGTCTAATTCCCCAACA+TGG 0.624747 4_4:-74479015 Msa0702720:three_prime_UTR
TATCCCATTTGGCACAATGG+TGG 0.629550 4_4:-74480222 Msa0702720:CDS
TCTACTGCTGCACACAAATG+GGG 0.631157 4_4:-74483564 Msa0702720:CDS
CAAATGGGGTGGTCTTGGTG+AGG 0.631751 4_4:-74483550 Msa0702720:CDS
GAAGCCTCTGGTCATGTGTG+GGG 0.632670 4_4:-74479228 Msa0702720:three_prime_UTR
TGATTTGGAATCTCTGGTGA+CGG 0.633113 4_4:-74481026 Msa0702720:intron
TCAAGATGTCCCAAAGCCTG+TGG 0.633218 4_4:-74481404 Msa0702720:CDS
AGATGTCCCAAAGCCTGTGG+AGG 0.635079 4_4:-74481401 Msa0702720:CDS
GGTCTTGGTGAGGTTCTGGG+TGG 0.636779 4_4:-74483540 Msa0702720:CDS
ACTGTACCAAGAAGTGCAAG+AGG 0.641941 4_4:+74480167 None:intergenic
ATCCAATGTAATGTAAAGAG+GGG 0.644683 4_4:-74478977 Msa0702720:three_prime_UTR
TAAATGCTGAGAACTACCAC+TGG 0.646179 4_4:-74479675 Msa0702720:CDS
CCCATCAGAGAAACCACTGA+AGG 0.648823 4_4:+74480053 None:intergenic
AAGACAGTCAATTACAGCCG+GGG 0.650653 4_4:+74479117 None:intergenic
CAGTAGAAGTACTAGATGGG+TGG 0.656556 4_4:+74483580 None:intergenic
CAATAAATATGCTGCCAAAG+GGG 0.656961 4_4:+74480021 None:intergenic
GAAAGAATAACTAAATAGCG+AGG 0.658895 4_4:+74480838 None:intergenic
TGGAACTTGAAACCATGTTG+GGG 0.661336 4_4:+74479003 None:intergenic
TGTTTACAGGTAGAATCACA+GGG 0.661513 4_4:-74479195 Msa0702720:three_prime_UTR
GGATCGGGATTGGAAGGACA+TGG 0.668832 4_4:+74485211 None:intergenic
TGTCACACAAACAGTAACGA+TGG 0.672279 4_4:+74479720 None:intergenic
GGTTCCCCACACATGACCAG+AGG 0.672489 4_4:+74479224 None:intergenic
ACTGCTGCACACAAATGGGG+TGG 0.678345 4_4:-74483561 Msa0702720:CDS
AGAAAGACGTCCATTGCCAG+TGG 0.681900 4_4:+74479659 None:intergenic
CTGTACCAAGAAGTGCAAGA+GGG 0.682888 4_4:+74480168 None:intergenic
TCTGGCTGGAAACTTGTGCA+CGG 0.685297 4_4:-74480877 Msa0702720:CDS
GAGAAACCACTGAAGGTGTG+AGG 0.685299 4_4:+74480060 None:intergenic
TCGGGATTGGAAGGACATGG+TGG 0.702018 4_4:+74485214 None:intergenic
AGAATAACTAAATAGCGAGG+AGG 0.710040 4_4:+74480841 None:intergenic
TAGACATAAGTCCTTCAATG+GGG 0.748274 4_4:+74479029 None:intergenic
GTTGTTGGAAGAAACTGGAG+TGG 0.756109 4_4:-74480146 Msa0702720:CDS
AGTCCAGGTAGACATCAAAG+CGG 0.788919 4_4:+74481314 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTATTTTTAAAAAAAA+TGG + chr4_4:74483085-74483104 None:intergenic 0.0%
!! GGGTAAATAAATATTAATTA+GGG + chr4_4:74478963-74478982 None:intergenic 15.0%
!! TGGGTAAATAAATATTAATT+AGG + chr4_4:74478964-74478983 None:intergenic 15.0%
!! TATTATTGAAAAATTTCGAA+CGG - chr4_4:74479914-74479933 Msa0702720:intron 15.0%
!! TGTCAAAATAAAAAACTTAA+GGG + chr4_4:74480009-74480028 None:intergenic 15.0%
!! TTGTCAAAATAAAAAACTTA+AGG + chr4_4:74480010-74480029 None:intergenic 15.0%
!!! AAAACCAAGTTTTTAAATAT+TGG - chr4_4:74480029-74480048 Msa0702720:CDS 15.0%
!! TAATCCAATATTTAAAAACT+TGG + chr4_4:74480036-74480055 None:intergenic 15.0%
!!! TTTTAACTTTTTAGCTAATT+AGG - chr4_4:74480195-74480214 Msa0702720:CDS 15.0%
!! TTAAAAGTTACAACTAATTA+AGG + chr4_4:74480514-74480533 None:intergenic 15.0%
!!! AATACATCCTTTTAAAAAAA+TGG + chr4_4:74480637-74480656 None:intergenic 15.0%
!! TGTAAAATAATTCATTCAAT+TGG + chr4_4:74481348-74481367 None:intergenic 15.0%
!!! TTTTTAAATCCAATATTGTT+TGG - chr4_4:74482405-74482424 Msa0702720:intron 15.0%
!!! ATTTTATCTGTTCTTATTTA+TGG - chr4_4:74483351-74483370 Msa0702720:CDS 15.0%
!!! TTAGAAAAACATAATTTTCT+AGG + chr4_4:74483394-74483413 None:intergenic 15.0%
!!! AATTGGTTTTATGAATGTTA+TGG - chr4_4:74479349-74479368 Msa0702720:CDS 20.0%
!!! TTGTTATTATTTAGTGATCT+TGG - chr4_4:74479528-74479547 Msa0702720:CDS 20.0%
!!! AATCCTGTTTATTTACTTTT+TGG - chr4_4:74479838-74479857 Msa0702720:intron 20.0%
!! ATTATTGAAAAATTTCGAAC+GGG - chr4_4:74479915-74479934 Msa0702720:intron 20.0%
!!! TATCATATTTAAAACTTCCA+TGG + chr4_4:74480239-74480258 None:intergenic 20.0%
!! TATAACTTTACTTACTCTAT+AGG - chr4_4:74480465-74480484 Msa0702720:intron 20.0%
!!! TTATTTTATTGCAGTATCAA+CGG - chr4_4:74480657-74480676 Msa0702720:intron 20.0%
!! TAATAATTGTATGTTTCTTG+TGG + chr4_4:74480731-74480750 None:intergenic 20.0%
!! TAAATAATATTTCCTTTCAG+AGG - chr4_4:74481292-74481311 Msa0702720:intron 20.0%
!! TCAAAACAAATAAATTATCG+AGG - chr4_4:74481623-74481642 Msa0702720:intron 20.0%
!! TGAAAACTAATAAGTTATCT+AGG + chr4_4:74481857-74481876 None:intergenic 20.0%
!! TTGATTATAATAGGACATTA+TGG - chr4_4:74481945-74481964 Msa0702720:intron 20.0%
!!! TAAATTTAAAACAAGGAATG+AGG + chr4_4:74482496-74482515 None:intergenic 20.0%
!! TTTAATGTTTAAGGATATGT+TGG - chr4_4:74482725-74482744 Msa0702720:intron 20.0%
!! TGTTAAATACAATAATGATC+AGG - chr4_4:74482814-74482833 Msa0702720:intron 20.0%
!!! TTTGAAGTTTTTTTTTTGTG+TGG - chr4_4:74483914-74483933 Msa0702720:intron 20.0%
!!! ACTATTTTTATTTGCATGTT+AGG - chr4_4:74483990-74484009 Msa0702720:intron 20.0%
!!! ATCAAATTCCTTTTATTTGT+TGG - chr4_4:74484417-74484436 Msa0702720:intron 20.0%
!!! TAAGTCATTTTTCTTGATAA+AGG + chr4_4:74484466-74484485 None:intergenic 20.0%
!! AAGAAAAATGACTTAGATAA+TGG - chr4_4:74484471-74484490 Msa0702720:intron 20.0%
!!! GTGTATTCTTTTTCTATATT+GGG - chr4_4:74485188-74485207 Msa0702720:CDS 20.0%
!!! TGTATTCTTTTTCTATATTG+GGG - chr4_4:74485189-74485208 Msa0702720:CDS 20.0%
!!! AAAAGAAGGTAAGGTTTTAT+GGG + chr4_4:74478983-74479002 None:intergenic 25.0%
!!! GGTTTTTGTTTGTATAATGT+AGG - chr4_4:74479415-74479434 Msa0702720:intron 25.0%
! GAACCAAAAAGTAAATAAAC+AGG + chr4_4:74479844-74479863 None:intergenic 25.0%
! TCAGTTAATATTGAGTTAGA+CGG + chr4_4:74480141-74480160 None:intergenic 25.0%
! ATCTTAATTGCATTCTACTT+TGG - chr4_4:74480171-74480190 Msa0702720:CDS 25.0%
!! TCAACTGTTTAATTTATTGC+TGG + chr4_4:74480308-74480327 None:intergenic 25.0%
! TTGTAAGCTAATAGATATAG+GGG + chr4_4:74480542-74480561 None:intergenic 25.0%
! GTTGTAAGCTAATAGATATA+GGG + chr4_4:74480543-74480562 None:intergenic 25.0%
!!! ATGGCTTCCATTTTTTTAAA+AGG - chr4_4:74480627-74480646 Msa0702720:intron 25.0%
!! TATTTTATTGCAGTATCAAC+GGG - chr4_4:74480658-74480677 Msa0702720:intron 25.0%
!! TTAACGAATACTCTTATTTC+AGG - chr4_4:74480931-74480950 Msa0702720:intron 25.0%
! ATGCAATAGAGAATAATTAC+TGG - chr4_4:74481019-74481038 Msa0702720:intron 25.0%
!!! TTACTGGTTTGAATTTTTCA+TGG - chr4_4:74481035-74481054 Msa0702720:CDS 25.0%
!!! TACTGGTTTGAATTTTTCAT+GGG - chr4_4:74481036-74481055 Msa0702720:CDS 25.0%
! ATTATTTACACCAACTTCTA+TGG + chr4_4:74481280-74481299 None:intergenic 25.0%
! TCAGTTTCAAGACTTATTTA+TGG - chr4_4:74481490-74481509 Msa0702720:intron 25.0%
! CAGTTTCAAGACTTATTTAT+GGG - chr4_4:74481491-74481510 Msa0702720:intron 25.0%
! CTATTATAATCAAATGCAGT+CGG + chr4_4:74481938-74481957 None:intergenic 25.0%
!! ATGTCTGTACAATAATGTTT+TGG - chr4_4:74482066-74482085 Msa0702720:intron 25.0%
! TACATGATGACATTTATGTA+TGG - chr4_4:74482226-74482245 Msa0702720:intron 25.0%
! CATCAATTACCAAACAATAT+TGG + chr4_4:74482417-74482436 None:intergenic 25.0%
! AGTTATTCAGCAAAAATGAA+AGG + chr4_4:74482541-74482560 None:intergenic 25.0%
!!! TTTTGTTGTTGTTATTTCTC+TGG - chr4_4:74482571-74482590 Msa0702720:intron 25.0%
! TAATATTCTTGTGTGTGTAA+AGG + chr4_4:74482793-74482812 None:intergenic 25.0%
! ACATCTAATCCTATCTTATA+AGG - chr4_4:74482852-74482871 Msa0702720:intron 25.0%
! CATCTAATCCTATCTTATAA+GGG - chr4_4:74482853-74482872 Msa0702720:intron 25.0%
! ATCTAATCCTATCTTATAAG+GGG - chr4_4:74482854-74482873 Msa0702720:intron 25.0%
! ATTTGACATATTCTGTCAAA+TGG - chr4_4:74482983-74483002 Msa0702720:intron 25.0%
! TTTGACATATTCTGTCAAAT+GGG - chr4_4:74482984-74483003 Msa0702720:intron 25.0%
!!! TAAAAAAAATGGATTGTACC+TGG + chr4_4:74483074-74483093 None:intergenic 25.0%
! ATTATTGGGATGTTGTATAT+TGG - chr4_4:74483592-74483611 Msa0702720:CDS 25.0%
! TTATTGGGATGTTGTATATT+GGG - chr4_4:74483593-74483612 Msa0702720:CDS 25.0%
!!! ACTGTTCTAGTTTTTTGTAA+TGG - chr4_4:74483719-74483738 Msa0702720:intron 25.0%
! ACAATTAAGAGAATGTTAGT+TGG + chr4_4:74483781-74483800 None:intergenic 25.0%
! GAATATAGCAATAGTGTTTA+AGG + chr4_4:74484087-74484106 None:intergenic 25.0%
! AACACTATTGCTATATTCTA+TGG - chr4_4:74484089-74484108 Msa0702720:intron 25.0%
! ACACTATTGCTATATTCTAT+GGG - chr4_4:74484090-74484109 Msa0702720:intron 25.0%
!! ATTTTGTATTTACTTCCTTC+TGG - chr4_4:74484354-74484373 Msa0702720:intron 25.0%
!! TTGATAATTAAAACAAGTCG+TGG + chr4_4:74484402-74484421 None:intergenic 25.0%
! TGACAAAACCAACAAATAAA+AGG + chr4_4:74484428-74484447 None:intergenic 25.0%
!! AACAGAGTATTTGCTTTAAA+GGG + chr4_4:74484497-74484516 None:intergenic 25.0%
!! AAACAGAGTATTTGCTTTAA+AGG + chr4_4:74484498-74484517 None:intergenic 25.0%
! ATAGGATATCTTATCATATG+CGG - chr4_4:74484897-74484916 Msa0702720:intron 25.0%
!! GGTGTATTCTTTTTCTATAT+TGG - chr4_4:74485187-74485206 Msa0702720:CDS 25.0%
!! GTATTCTTTTTCTATATTGG+GGG - chr4_4:74485190-74485209 Msa0702720:CDS 25.0%
!!! TTTTAGAGTTAGCACAATAT+CGG - chr4_4:74485257-74485276 Msa0702720:five_prime_UTR 25.0%
! GTTTCATCCCTTTATAAAAT+AGG - chr4_4:74485292-74485311 Msa0702720:five_prime_UTR 25.0%
! TTTACATTACATTGGATAGT+TGG + chr4_4:74485366-74485385 None:intergenic 25.0%
! TATCCAATGTAATGTAAAGA+GGG - chr4_4:74485368-74485387 Msa0702720:five_prime_UTR 25.0%
! GAAAAGAAGGTAAGGTTTTA+TGG + chr4_4:74478984-74479003 None:intergenic 30.0%
AGTAGATCAAATCATGAGAT+CGG + chr4_4:74479253-74479272 None:intergenic 30.0%
!!! AAAGTTGCGTTTTTTAGTGT+TGG - chr4_4:74479376-74479395 Msa0702720:intron 30.0%
!! TTTTTAGTGTTGGATCTTAC+TGG - chr4_4:74479386-74479405 Msa0702720:intron 30.0%
!! TTTTAGTGTTGGATCTTACT+GGG - chr4_4:74479387-74479406 Msa0702720:intron 30.0%
TAACATTATGTTGAAGTGTG+AGG - chr4_4:74479622-74479641 Msa0702720:CDS 30.0%
TATACCAAAACCTGTTAATC+AGG + chr4_4:74479661-74479680 None:intergenic 30.0%
TGTGAGTCTGTGATATTTAT+CGG - chr4_4:74479787-74479806 Msa0702720:intron 30.0%
CTAATTAGGCCAACTTTATT+CGG - chr4_4:74480209-74480228 Msa0702720:CDS 30.0%
! TGTCATGCTTTTCTAATCTA+TGG - chr4_4:74480260-74480279 Msa0702720:CDS 30.0%
GGTTGTAAGCTAATAGATAT+AGG + chr4_4:74480544-74480563 None:intergenic 30.0%
! TTGTAGTTTCAAGAAGTGTA+TGG - chr4_4:74480608-74480627 Msa0702720:intron 30.0%
! GTTTCTTGTGGATTGTTATA+GGG + chr4_4:74480719-74480738 None:intergenic 30.0%
! TGTTTCTTGTGGATTGTTAT+AGG + chr4_4:74480720-74480739 None:intergenic 30.0%
TTAGGAACTTGATCTCAATT+TGG + chr4_4:74480850-74480869 None:intergenic 30.0%
! CAAGAGAAGTTTTCATACTT+AGG + chr4_4:74480868-74480887 None:intergenic 30.0%
!! ATAAGAGTATTCGTTAAAGC+TGG + chr4_4:74480928-74480947 None:intergenic 30.0%
! TACTCTTATTTCAGGAAATG+TGG - chr4_4:74480939-74480958 Msa0702720:intron 30.0%
TTCAGGAAATGTGGATAAAA+CGG - chr4_4:74480948-74480967 Msa0702720:intron 30.0%
TATTCTTGATGTTAGTGTAC+TGG + chr4_4:74481160-74481179 None:intergenic 30.0%
CAACGTAAAAATAACAGAAG+CGG - chr4_4:74481187-74481206 Msa0702720:intron 30.0%
!! ATGTGTGTTTCTTAGTTTGT+AGG + chr4_4:74481223-74481242 None:intergenic 30.0%
ACAAACTAAGAAACACACAT+CGG - chr4_4:74481223-74481242 Msa0702720:intron 30.0%
AGAGTATAAACCATAGAAGT+TGG - chr4_4:74481267-74481286 Msa0702720:intron 30.0%
!! ACTGCTTTTGACTCATAATA+GGG + chr4_4:74481542-74481561 None:intergenic 30.0%
!! AACTGCTTTTGACTCATAAT+AGG + chr4_4:74481543-74481562 None:intergenic 30.0%
TGAGTCAAAAGCAGTTAAAA+TGG - chr4_4:74481547-74481566 Msa0702720:CDS 30.0%
CGACTGCATTTGATTATAAT+AGG - chr4_4:74481936-74481955 Msa0702720:intron 30.0%
TGTTATCAACAGTAAGCTAT+CGG + chr4_4:74482156-74482175 None:intergenic 30.0%
!! TTAACTATTCTAGAATGCCT+TGG - chr4_4:74482300-74482319 Msa0702720:intron 30.0%
ATTCTTGATTCCATACTTCT+CGG + chr4_4:74482360-74482379 None:intergenic 30.0%
TTGTCATAATGTTATGAGTG+AGG - chr4_4:74482451-74482470 Msa0702720:intron 30.0%
TGTCATAATGTTATGAGTGA+GGG - chr4_4:74482452-74482471 Msa0702720:intron 30.0%
! GTTCCTACTAATATCACTTT+TGG - chr4_4:74483006-74483025 Msa0702720:intron 30.0%
CATCATGAAAGAGTTGAAAA+TGG + chr4_4:74483217-74483236 None:intergenic 30.0%
! CATTTTCAACTCTTTCATGA+TGG - chr4_4:74483215-74483234 Msa0702720:intron 30.0%
ATGACTATGCAAAATATGCT+CGG - chr4_4:74483289-74483308 Msa0702720:intron 30.0%
GAAAGAATAACTAAATAGCG+AGG + chr4_4:74483511-74483530 None:intergenic 30.0%
! TCATCTTACTGGCTATTATT+GGG - chr4_4:74483578-74483597 Msa0702720:CDS 30.0%
TTCAATTATCATGTAGCACA+TGG - chr4_4:74483663-74483682 Msa0702720:CDS 30.0%
! TTTACACGACATGGATTATT+TGG + chr4_4:74484230-74484249 None:intergenic 30.0%
TCAATAAATATGCTGCCAAA+GGG + chr4_4:74484329-74484348 None:intergenic 30.0%
TTCAATAAATATGCTGCCAA+AGG + chr4_4:74484330-74484349 None:intergenic 30.0%
ATACACATAAACTGATGTTG+AGG + chr4_4:74484722-74484741 None:intergenic 30.0%
! TACACTTTGATGTTTTCTCT+TGG - chr4_4:74484814-74484833 Msa0702720:intron 30.0%
AGAAACATCAAGTGTGATTA+AGG - chr4_4:74485033-74485052 Msa0702720:intron 30.0%
TTCTACCTGTAAACATTGTT+AGG + chr4_4:74485146-74485165 None:intergenic 30.0%
TTAGACATAAGTCCTTCAAT+GGG + chr4_4:74485321-74485340 None:intergenic 30.0%
ATTAGACATAAGTCCTTCAA+TGG + chr4_4:74485322-74485341 None:intergenic 30.0%
CTATCCAATGTAATGTAAAG+AGG - chr4_4:74485367-74485386 Msa0702720:five_prime_UTR 30.0%
ATCCAATGTAATGTAAAGAG+GGG - chr4_4:74485369-74485388 Msa0702720:five_prime_UTR 30.0%
AGATTGAAGAGTGGAAAAGA+AGG + chr4_4:74478997-74479016 None:intergenic 35.0%
! TAACGCTTTTGTGTTGTGTT+GGG - chr4_4:74479078-74479097 Msa0702720:three_prime_UTR 35.0%
AAATGAAGAGAGAGAAGAAG+AGG + chr4_4:74479169-74479188 None:intergenic 35.0%
GAGATCGGGAAAAAAAAGAT+GGG + chr4_4:74479238-74479257 None:intergenic 35.0%
TGAGATCGGGAAAAAAAAGA+TGG + chr4_4:74479239-74479258 None:intergenic 35.0%
GTAGATCAAATCATGAGATC+GGG + chr4_4:74479252-74479271 None:intergenic 35.0%
!!! ACCCTTTTAGCTTTTAGCTT+CGG - chr4_4:74479313-74479332 Msa0702720:exon 35.0%
TCCGAAGCTAAAAGCTAAAA+GGG + chr4_4:74479317-74479336 None:intergenic 35.0%
ATCCGAAGCTAAAAGCTAAA+AGG + chr4_4:74479318-74479337 None:intergenic 35.0%
!!! TAGCTTTTAGCTTCGGATTT+TGG - chr4_4:74479320-74479339 Msa0702720:CDS 35.0%
!!! TTAGCTTCGGATTTTGGTTT+TGG - chr4_4:74479326-74479345 Msa0702720:CDS 35.0%
!!! TCGGATTTTGGTTTTGGAAT+TGG - chr4_4:74479332-74479351 Msa0702720:CDS 35.0%
AATAAATCACTGTAGTGCTG+AGG - chr4_4:74479575-74479594 Msa0702720:CDS 35.0%
GATTAATGTGCCTGATTAAC+AGG - chr4_4:74479648-74479667 Msa0702720:CDS 35.0%
ATGCATGGATTCAATTGTCA+TGG - chr4_4:74479695-74479714 Msa0702720:CDS 35.0%
CATAAACAACCAAACAACTG+CGG + chr4_4:74479729-74479748 None:intergenic 35.0%
TGTTTATGTCTTAGCGATCA+TGG - chr4_4:74479741-74479760 Msa0702720:CDS 35.0%
AGTCTGTGATATTTATCGGT+TGG - chr4_4:74479791-74479810 Msa0702720:intron 35.0%
TTCATGATTCTACAACAGTG+AGG - chr4_4:74479861-74479880 Msa0702720:intron 35.0%
CTGAAAAGAATTGAGTGTGT+AGG - chr4_4:74479948-74479967 Msa0702720:intron 35.0%
AAGCTAATAGATATAGGGGT+TGG + chr4_4:74480538-74480557 None:intergenic 35.0%
CAAACTAAGAAACACACATC+GGG - chr4_4:74481224-74481243 Msa0702720:intron 35.0%
AAACTAAGAAACACACATCG+GGG - chr4_4:74481225-74481244 Msa0702720:intron 35.0%
GGTTTATACTCTTGCTCAAA+GGG + chr4_4:74481259-74481278 None:intergenic 35.0%
TGGTTTATACTCTTGCTCAA+AGG + chr4_4:74481260-74481279 None:intergenic 35.0%
ACAATCTTAGAATCAGCATC+AGG - chr4_4:74481365-74481384 Msa0702720:CDS 35.0%
CAATCTTAGAATCAGCATCA+GGG - chr4_4:74481366-74481385 Msa0702720:CDS 35.0%
CATCTTCTAATCAATCCTAG+AGG - chr4_4:74481430-74481449 Msa0702720:intron 35.0%
AGACTAAACAAGCCATAAAG+TGG - chr4_4:74481453-74481472 Msa0702720:intron 35.0%
!!! TGAACTGTTTTAGCATCCAA+TGG - chr4_4:74481654-74481673 Msa0702720:intron 35.0%
CCTATTGATGAATCATTTGC+AGG + chr4_4:74481707-74481726 None:intergenic 35.0%
CCTGCAAATGATTCATCAAT+AGG - chr4_4:74481704-74481723 Msa0702720:intron 35.0%
TATGCCAATGATTCGTCAAT+AGG + chr4_4:74481767-74481786 None:intergenic 35.0%
! GGAAGTCACAGAACTATTTT+AGG + chr4_4:74481836-74481855 None:intergenic 35.0%
ATCAAGGATATAGTTACACC+AGG - chr4_4:74482011-74482030 Msa0702720:intron 35.0%
!!! TACAATAATGTTTTGGCCTC+TGG - chr4_4:74482073-74482092 Msa0702720:intron 35.0%
!!! ACAATAATGTTTTGGCCTCT+GGG - chr4_4:74482074-74482093 Msa0702720:intron 35.0%
!! GATAGCTTACTGTTGATAAC+AGG - chr4_4:74482155-74482174 Msa0702720:intron 35.0%
ATTCAGATGATCTTCCTTTG+TGG - chr4_4:74482620-74482639 Msa0702720:intron 35.0%
TTCAGATGATCTTCCTTTGT+GGG - chr4_4:74482621-74482640 Msa0702720:intron 35.0%
ACTGCCTCTTTCTCTTTATT+TGG - chr4_4:74482655-74482674 Msa0702720:intron 35.0%
CACACCAAATAAAGAGAAAG+AGG + chr4_4:74482662-74482681 None:intergenic 35.0%
ATCCGTGGAGTTTCATATTT+AGG - chr4_4:74482884-74482903 Msa0702720:intron 35.0%
GACCTAAATATGAAACTCCA+CGG + chr4_4:74482889-74482908 None:intergenic 35.0%
CGTCCAAAAGTGATATTAGT+AGG + chr4_4:74483012-74483031 None:intergenic 35.0%
AATCTATGAGACAGAAAAGG+AGG + chr4_4:74483184-74483203 None:intergenic 35.0%
GTGAATCTATGAGACAGAAA+AGG + chr4_4:74483187-74483206 None:intergenic 35.0%
TTTCTGTCTCATAGATTCAC+TGG - chr4_4:74483187-74483206 Msa0702720:intron 35.0%
TCATTGATACCAATCCAGTA+AGG + chr4_4:74483248-74483267 None:intergenic 35.0%
TGACTATGCAAAATATGCTC+GGG - chr4_4:74483290-74483309 Msa0702720:intron 35.0%
! AGATGATGATTTGGAATCTC+TGG - chr4_4:74483314-74483333 Msa0702720:CDS 35.0%
GTCATTGCTTACATGTTTAC+AGG - chr4_4:74483426-74483445 Msa0702720:intron 35.0%
AGAATAACTAAATAGCGAGG+AGG + chr4_4:74483508-74483527 None:intergenic 35.0%
GTTATTCTTTCAGCTGTAGT+TGG - chr4_4:74483520-74483539 Msa0702720:CDS 35.0%
! GTCATCTTACTGGCTATTAT+TGG - chr4_4:74483577-74483596 Msa0702720:CDS 35.0%
CATTCTCTTAATTGTGTCTC+AGG - chr4_4:74483786-74483805 Msa0702720:intron 35.0%
! GAGAGCATAACAAACAATGA+AGG + chr4_4:74483831-74483850 None:intergenic 35.0%
!! TTCATTTCTGGTTATGTGAG+TGG - chr4_4:74483857-74483876 Msa0702720:intron 35.0%
!! TCATTTCTGGTTATGTGAGT+GGG - chr4_4:74483858-74483877 Msa0702720:intron 35.0%
TTTGCATGTTAGGTAAAAGC+TGG - chr4_4:74484000-74484019 Msa0702720:intron 35.0%
TAAAGAAGCTGTAAGGATCA+TGG + chr4_4:74484033-74484052 None:intergenic 35.0%
ATGGGAATAAAGAAGCTGTA+AGG + chr4_4:74484040-74484059 None:intergenic 35.0%
TTATTCCCATTCATGTGCTT+TGG - chr4_4:74484050-74484069 Msa0702720:intron 35.0%
CAATTCCAAAGCACATGAAT+GGG + chr4_4:74484058-74484077 None:intergenic 35.0%
!!! TGGTGGTTGTTTTTGTCATT+TGG - chr4_4:74484141-74484160 Msa0702720:intron 35.0%
!!! GGTGGTTGTTTTTGTCATTT+GGG - chr4_4:74484142-74484161 Msa0702720:intron 35.0%
! GGAATAGTTTTTACACGACA+TGG + chr4_4:74484239-74484258 None:intergenic 35.0%
CAATAAATATGCTGCCAAAG+GGG + chr4_4:74484328-74484347 None:intergenic 35.0%
!! TACTTCCTTCTGGAATTACA+AGG - chr4_4:74484364-74484383 Msa0702720:intron 35.0%
AAACAGGTGTACTATGTGTA+TGG - chr4_4:74484574-74484593 Msa0702720:intron 35.0%
ACTGTTTGTGTGACAATTGT+CGG - chr4_4:74484634-74484653 Msa0702720:intron 35.0%
! TTCCAAACCAGCTTCTATTT+TGG - chr4_4:74484790-74484809 Msa0702720:intron 35.0%
ATCCAAAATAGAAGCTGGTT+TGG + chr4_4:74484795-74484814 None:intergenic 35.0%
AGTGTATCCAAAATAGAAGC+TGG + chr4_4:74484800-74484819 None:intergenic 35.0%
! TTGATGTTTTCTCTTGGACT+AGG - chr4_4:74484820-74484839 Msa0702720:intron 35.0%
TTTCATCCTGCATATGTGAT+AGG - chr4_4:74484879-74484898 Msa0702720:intron 35.0%
AGATATCCTATCACATATGC+AGG + chr4_4:74484888-74484907 None:intergenic 35.0%
AAACTTTCAACCAACAGTTC+AGG + chr4_4:74484950-74484969 None:intergenic 35.0%
! AAGTTTTTGTTCCAATGTGC+AGG - chr4_4:74484964-74484983 Msa0702720:CDS 35.0%
! GTTCCAATTTGTTTGTGAGA+AGG - chr4_4:74485004-74485023 Msa0702720:CDS 35.0%
GATCCTTCTCACAAACAAAT+TGG + chr4_4:74485010-74485029 None:intergenic 35.0%
! TAAGGTTTTCTGAGTCAAAC+CGG - chr4_4:74485051-74485070 Msa0702720:intron 35.0%
TGCTGGAGACAATAAATTCT+TGG - chr4_4:74485093-74485112 Msa0702720:intron 35.0%
TGGAGACAATAAATTCTTGG+AGG - chr4_4:74485096-74485115 Msa0702720:intron 35.0%
ATGTTTACAGGTAGAATCAC+AGG - chr4_4:74485150-74485169 Msa0702720:CDS 35.0%
TGTTTACAGGTAGAATCACA+GGG - chr4_4:74485151-74485170 Msa0702720:CDS 35.0%
TAAAGACAGTCAATTACAGC+CGG + chr4_4:74485234-74485253 None:intergenic 35.0%
! TGGGGCTCCTATTTTATAAA+GGG + chr4_4:74485302-74485321 None:intergenic 35.0%
! ATGGGGCTCCTATTTTATAA+AGG + chr4_4:74485303-74485322 None:intergenic 35.0%
TAGACATAAGTCCTTCAATG+GGG + chr4_4:74485320-74485339 None:intergenic 35.0%
TTATGTCTAATTCCCCAACA+TGG - chr4_4:74485331-74485350 Msa0702720:five_prime_UTR 35.0%
TTGGAACTTGAAACCATGTT+GGG + chr4_4:74485347-74485366 None:intergenic 35.0%
TTCCCCTCTTTACATTACAT+TGG + chr4_4:74485374-74485393 None:intergenic 35.0%
GAAGAGTGGAAAAGAAGGTA+AGG + chr4_4:74478992-74479011 None:intergenic 40.0%
CGTTGTTGAAGATTGAAGAG+TGG + chr4_4:74479006-74479025 None:intergenic 40.0%
! GTAACGCTTTTGTGTTGTGT+TGG - chr4_4:74479077-74479096 Msa0702720:three_prime_UTR 40.0%
AGAAGAGGAAGAAGATGGAT+CGG + chr4_4:74479154-74479173 None:intergenic 40.0%
AGAGAAGAAGAGGAAGAAGA+TGG + chr4_4:74479159-74479178 None:intergenic 40.0%
TTCTCTGCTCAGTTGTGATT+TGG - chr4_4:74479275-74479294 Msa0702720:three_prime_UTR 40.0%
! GTTGGATCTTACTGGGTTTT+TGG - chr4_4:74479394-74479413 Msa0702720:intron 40.0%
! TGTGCCTGATTAACAGGTTT+TGG - chr4_4:74479654-74479673 Msa0702720:CDS 40.0%
! CGGTTGGCAATCTTTTTATG+TGG - chr4_4:74479807-74479826 Msa0702720:intron 40.0%
ACAGTGAGGTTGACAATTGT+TGG - chr4_4:74479875-74479894 Msa0702720:intron 40.0%
CAATAATATTGCCAGCAGAG+AGG + chr4_4:74479902-74479921 None:intergenic 40.0%
TAACACATCAGATGATGTCC+TGG + chr4_4:74480107-74480126 None:intergenic 40.0%
TAGTTAAAGACAGAGAGCAG+AGG + chr4_4:74480414-74480433 None:intergenic 40.0%
CTTTACTTACTCTATAGGCG+TGG - chr4_4:74480470-74480489 Msa0702720:CDS 40.0%
GGATGATCCTGTTAACCTTT+GGG - chr4_4:74480679-74480698 Msa0702720:intron 40.0%
TTGTTCACCCAAAGGTTAAC+AGG + chr4_4:74480689-74480708 None:intergenic 40.0%
AACCTTTGGGTGAACAAAGT+TGG - chr4_4:74480692-74480711 Msa0702720:intron 40.0%
TACTAGATGGGTGGCAAAAT+GGG + chr4_4:74480760-74480779 None:intergenic 40.0%
!! CAGCAGTAGAAGTACTAGAT+GGG + chr4_4:74480772-74480791 None:intergenic 40.0%
TTCTACTGCTGCACACAAAT+GGG - chr4_4:74480781-74480800 Msa0702720:CDS 40.0%
! TAAAACGGTCTTTTGCCAGA+TGG - chr4_4:74480963-74480982 Msa0702720:intron 40.0%
TTGCATCATCAAGATCCATC+TGG + chr4_4:74480981-74481000 None:intergenic 40.0%
!! GATGGATCTTGATGATGCAA+AGG - chr4_4:74480981-74481000 Msa0702720:intron 40.0%
! GCTAGCATGAAGTTTTCCTT+AGG - chr4_4:74481134-74481153 Msa0702720:CDS 40.0%
CTCAAGTCAAGACCACTTTA+TGG + chr4_4:74481468-74481487 None:intergenic 40.0%
TGCACCTATTGACGAATCAT+TGG - chr4_4:74481760-74481779 Msa0702720:intron 40.0%
! TGTATGATGATGAAGCCAGA+AGG + chr4_4:74481806-74481825 None:intergenic 40.0%
TGGCTTCATCATCATACAGT+TGG - chr4_4:74481808-74481827 Msa0702720:intron 40.0%
TGGTCTTCACTTGAGAATCA+AGG - chr4_4:74481995-74482014 Msa0702720:intron 40.0%
AGTTAGCACATGACAACTGA+GGG + chr4_4:74482045-74482064 None:intergenic 40.0%
!!! CAATAATGTTTTGGCCTCTG+GGG - chr4_4:74482075-74482094 Msa0702720:intron 40.0%
CATACTCCTTTGACAGACAT+TGG + chr4_4:74482182-74482201 None:intergenic 40.0%
TCAGATGATCTTCCTTTGTG+GGG - chr4_4:74482622-74482641 Msa0702720:intron 40.0%
AAAGAGAAAGAGGCAGTTCT+AGG + chr4_4:74482652-74482671 None:intergenic 40.0%
CCATTATCGCTATGCTTATC+AGG + chr4_4:74482761-74482780 None:intergenic 40.0%
CCTGATAAGCATAGCGATAA+TGG - chr4_4:74482758-74482777 Msa0702720:intron 40.0%
ACATGAATGATCTGCACAGA+AGG + chr4_4:74482913-74482932 None:intergenic 40.0%
AATTCTCAGTCACAGAGCTA+AGG + chr4_4:74483156-74483175 None:intergenic 40.0%
ATGATGGTCATCTTCCTTAC+TGG - chr4_4:74483231-74483250 Msa0702720:intron 40.0%
! TGATTTGGAATCTCTGGTGA+CGG - chr4_4:74483320-74483339 Msa0702720:CDS 40.0%
AGAGACGTTAGTGAAGAATC+TGG - chr4_4:74483451-74483470 Msa0702720:intron 40.0%
! TTGTGCACGGTGATGTTTTT+CGG - chr4_4:74483482-74483501 Msa0702720:intron 40.0%
GGTTCTTCTTGTCATCTTAC+TGG - chr4_4:74483567-74483586 Msa0702720:CDS 40.0%
TGGCAGAGAATGAAAAGCAA+TGG + chr4_4:74483761-74483780 None:intergenic 40.0%
!! CATTTCTGGTTATGTGAGTG+GGG - chr4_4:74483859-74483878 Msa0702720:intron 40.0%
!! ATTTCTGGTTATGTGAGTGG+GGG - chr4_4:74483860-74483879 Msa0702720:intron 40.0%
CCAATTCCAAAGCACATGAA+TGG + chr4_4:74484059-74484078 None:intergenic 40.0%
!! CCATTCATGTGCTTTGGAAT+TGG - chr4_4:74484056-74484075 Msa0702720:intron 40.0%
GTACAGTTGTTGGAAGAAAC+TGG - chr4_4:74484195-74484214 Msa0702720:intron 40.0%
TACCACTTCTTCTCAGGAAT+GGG + chr4_4:74484266-74484285 None:intergenic 40.0%
GTTCACCTTGTAATTCCAGA+AGG + chr4_4:74484372-74484391 None:intergenic 40.0%
TTTCCTCCTTTGTGACAAAC+AGG - chr4_4:74484558-74484577 Msa0702720:intron 40.0%
AGTACACCTGTTTGTCACAA+AGG + chr4_4:74484567-74484586 None:intergenic 40.0%
!! TGTGTATGGCTTTATGCTAC+TGG - chr4_4:74484588-74484607 Msa0702720:intron 40.0%
TGTCACACAAACAGTAACGA+TGG + chr4_4:74484629-74484648 None:intergenic 40.0%
CTGTTTGTGTGACAATTGTC+GGG - chr4_4:74484635-74484654 Msa0702720:intron 40.0%
TAAATGCTGAGAACTACCAC+TGG - chr4_4:74484671-74484690 Msa0702720:intron 40.0%
TACGTGAAGACAAAGATGTC+AGG - chr4_4:74484763-74484782 Msa0702720:intron 40.0%
ACGTGAAGACAAAGATGTCA+GGG - chr4_4:74484764-74484783 Msa0702720:intron 40.0%
! CTTGGACTAGGAATTCTTTG+CGG - chr4_4:74484832-74484851 Msa0702720:intron 40.0%
! GCTTTTATCACCTGAACTGT+TGG - chr4_4:74484937-74484956 Msa0702720:intron 40.0%
GGGAACCTAACAATGTTTAC+AGG - chr4_4:74485138-74485157 Msa0702720:intron 40.0%
!!! ATCACAGGGTTTTGGTAATG+AGG - chr4_4:74485165-74485184 Msa0702720:CDS 40.0%
!!! TCACAGGGTTTTGGTAATGA+GGG - chr4_4:74485166-74485185 Msa0702720:CDS 40.0%
AAAGACAGTCAATTACAGCC+GGG + chr4_4:74485233-74485252 None:intergenic 40.0%
TAAAATAGGAGCCCCATTGA+AGG - chr4_4:74485306-74485325 Msa0702720:five_prime_UTR 40.0%
TGGAACTTGAAACCATGTTG+GGG + chr4_4:74485346-74485365 None:intergenic 40.0%
GTTGGAACTTGAAACCATGT+TGG + chr4_4:74485348-74485367 None:intergenic 40.0%
!! TGGTGATGGATGGGTTGAAT+TGG + chr4_4:74479115-74479134 None:intergenic 45.0%
GAAGAGGAAGAAGATGGATC+GGG + chr4_4:74479153-74479172 None:intergenic 45.0%
!! GTGATCTGATTCTGAAGCGA+AGG + chr4_4:74479198-74479217 None:intergenic 45.0%
CGCTTCAGAATCAGATCACA+AGG - chr4_4:74479199-74479218 Msa0702720:three_prime_UTR 45.0%
! AAATCACTGTAGTGCTGAGG+TGG - chr4_4:74479578-74479597 Msa0702720:CDS 45.0%
!! ATAGCTTGCTGTTGCATGCA+TGG - chr4_4:74479680-74479699 Msa0702720:CDS 45.0%
GAATCGAATCCGCAGTTGTT+TGG - chr4_4:74479717-74479736 Msa0702720:CDS 45.0%
! TGGTCTTAACGTGCACTTAG+GGG + chr4_4:74480087-74480106 None:intergenic 45.0%
!! CTGGTCTTAACGTGCACTTA+GGG + chr4_4:74480088-74480107 None:intergenic 45.0%
CATGGCTGTCCGAATAAAGT+TGG + chr4_4:74480221-74480240 None:intergenic 45.0%
CAACTTTATTCGGACAGCCA+TGG - chr4_4:74480219-74480238 Msa0702720:CDS 45.0%
GATGCATCAATCTGCTTCAC+TGG + chr4_4:74480582-74480601 None:intergenic 45.0%
GGGATGATCCTGTTAACCTT+TGG - chr4_4:74480678-74480697 Msa0702720:intron 45.0%
GTCCAACTTTGTTCACCCAA+AGG + chr4_4:74480697-74480716 None:intergenic 45.0%
GTACTAGATGGGTGGCAAAA+TGG + chr4_4:74480761-74480780 None:intergenic 45.0%
!! CAGTAGAAGTACTAGATGGG+TGG + chr4_4:74480769-74480788 None:intergenic 45.0%
!! GCAGCAGTAGAAGTACTAGA+TGG + chr4_4:74480773-74480792 None:intergenic 45.0%
CTTCTACTGCTGCACACAAA+TGG - chr4_4:74480780-74480799 Msa0702720:CDS 45.0%
TCTACTGCTGCACACAAATG+GGG - chr4_4:74480782-74480801 Msa0702720:CDS 45.0%
! GATGTTAGTGTACTGGCCTA+AGG + chr4_4:74481153-74481172 None:intergenic 45.0%
AATTGGATAGCGAAGACAGC+AGG + chr4_4:74481331-74481350 None:intergenic 45.0%
!! TGGCTTGTTTAGTCTCCTCT+AGG + chr4_4:74481448-74481467 None:intergenic 45.0%
TAGCATCCAATGGTACGATG+AGG - chr4_4:74481664-74481683 Msa0702720:intron 45.0%
AGACTTCCTCATCGTACCAT+TGG + chr4_4:74481673-74481692 None:intergenic 45.0%
TGATTCTCGTAGCCATGAAG+TGG - chr4_4:74481975-74481994 Msa0702720:intron 45.0%
CTCAAGTGAAGACCACTTCA+TGG + chr4_4:74481990-74482009 None:intergenic 45.0%
GTTAGCACATGACAACTGAG+GGG + chr4_4:74482044-74482063 None:intergenic 45.0%
CAGTTAGCACATGACAACTG+AGG + chr4_4:74482046-74482065 None:intergenic 45.0%
TCAACAGTAAGCTATCGGTG+TGG + chr4_4:74482151-74482170 None:intergenic 45.0%
ACAGGACCAATGTCTGTCAA+AGG - chr4_4:74482173-74482192 Msa0702720:intron 45.0%
TAGAATGCCTTGGTCAGTGT+TGG - chr4_4:74482310-74482329 Msa0702720:intron 45.0%
CTGAAAACCAACACTGACCA+AGG + chr4_4:74482320-74482339 None:intergenic 45.0%
!! ACCTCTAGAACCGAGAAGTA+TGG - chr4_4:74482347-74482366 Msa0702720:intron 45.0%
! TCCATACTTCTCGGTTCTAG+AGG + chr4_4:74482351-74482370 None:intergenic 45.0%
! TGAGTGAGGGTTTGTTCTGA+TGG - chr4_4:74482465-74482484 Msa0702720:intron 45.0%
!! GTTATTTCTCTGGTCTGCTC+TGG - chr4_4:74482581-74482600 Msa0702720:intron 45.0%
! AAATGTTTTCCTGCCTCCAC+AGG + chr4_4:74482961-74482980 None:intergenic 45.0%
TGTGGAGGCAGGAAAACATT+TGG - chr4_4:74482960-74482979 Msa0702720:intron 45.0%
AGTCCAGGTAGACATCAAAG+CGG + chr4_4:74483035-74483054 None:intergenic 45.0%
GCTCAAAGAAAGGATAGTCC+AGG + chr4_4:74483050-74483069 None:intergenic 45.0%
CTATCCTTTCTTTGAGCACC+AGG - chr4_4:74483053-74483072 Msa0702720:intron 45.0%
TGTACCTGGTGCTCAAAGAA+AGG + chr4_4:74483060-74483079 None:intergenic 45.0%
GGTCATCTTCCTTACTGGAT+TGG - chr4_4:74483236-74483255 Msa0702720:intron 45.0%
TGCTCGGGAAGATGATGATT+TGG - chr4_4:74483305-74483324 Msa0702720:intron 45.0%
ACGTTAGTGAAGAATCTGGC+TGG - chr4_4:74483455-74483474 Msa0702720:intron 45.0%
CATAGCTGAGATATGCATGC+AGG + chr4_4:74483694-74483713 None:intergenic 45.0%
TCTTAATTGTGTCTCAGGCG+AGG - chr4_4:74483791-74483810 Msa0702720:intron 45.0%
GCTCTCACATCGTTCATTTC+TGG - chr4_4:74483845-74483864 Msa0702720:intron 45.0%
!! TTTCTGGTTATGTGAGTGGG+GGG - chr4_4:74483861-74483880 Msa0702720:intron 45.0%
TCTCTAGCTGCTATCCCATT+TGG - chr4_4:74484113-74484132 Msa0702720:intron 45.0%
TGCTATCCCATTTGGCACAA+TGG - chr4_4:74484121-74484140 Msa0702720:intron 45.0%
TATCCCATTTGGCACAATGG+TGG - chr4_4:74484124-74484143 Msa0702720:intron 45.0%
CAACCACCATTGTGCCAAAT+GGG + chr4_4:74484130-74484149 None:intergenic 45.0%
ACAACCACCATTGTGCCAAA+TGG + chr4_4:74484131-74484150 None:intergenic 45.0%
TCTTTCCCTCTTGCACTTCT+TGG - chr4_4:74484173-74484192 Msa0702720:intron 45.0%
! CTGTACCAAGAAGTGCAAGA+GGG + chr4_4:74484181-74484200 None:intergenic 45.0%
! ACTGTACCAAGAAGTGCAAG+AGG + chr4_4:74484182-74484201 None:intergenic 45.0%
GCACTTCTTGGTACAGTTGT+TGG - chr4_4:74484185-74484204 Msa0702720:intron 45.0%
GTTGTTGGAAGAAACTGGAG+TGG - chr4_4:74484200-74484219 Msa0702720:intron 45.0%
GTACCACTTCTTCTCAGGAA+TGG + chr4_4:74484267-74484286 None:intergenic 45.0%
ACCTTCAGTGGTTTCTCTGA+TGG - chr4_4:74484292-74484311 Msa0702720:intron 45.0%
CCTTCAGTGGTTTCTCTGAT+GGG - chr4_4:74484293-74484312 Msa0702720:intron 45.0%
TTAGCGAACACACACACTGT+TGG - chr4_4:74484522-74484541 Msa0702720:intron 45.0%
ACACCTGTTTGTCACAAAGG+AGG + chr4_4:74484564-74484583 None:intergenic 45.0%
AAATTCTTGGAGGAAGCCTC+TGG - chr4_4:74485106-74485125 Msa0702720:intron 45.0%
! CAGGTAGAATCACAGGGTTT+TGG - chr4_4:74485157-74485176 Msa0702720:CDS 45.0%
!!! GAAGCCTGAGATTTTTTCCC+CGG - chr4_4:74485212-74485231 Msa0702720:CDS 45.0%
AAGACAGTCAATTACAGCCG+GGG + chr4_4:74485232-74485251 None:intergenic 45.0%
!!! AAATTATTAAATTTAAAACA+AGG + chr4_4:74482503-74482522 None:intergenic 5.0%
!!! TATATTTTTTTTAATGTTTA+AGG - chr4_4:74482716-74482735 Msa0702720:intron 5.0%
!!! AATATTGAAATATTTATTTT+TGG - chr4_4:74483099-74483118 Msa0702720:intron 5.0%
!! AGGACATGGTGGTGATGGAT+GGG + chr4_4:74479124-74479143 None:intergenic 50.0%
!! AAGGACATGGTGGTGATGGA+TGG + chr4_4:74479125-74479144 None:intergenic 50.0%
! TTGGAAGGACATGGTGGTGA+TGG + chr4_4:74479129-74479148 None:intergenic 50.0%
GAAGATGGATCGGGATTGGA+AGG + chr4_4:74479144-74479163 None:intergenic 50.0%
GGAAGAAGATGGATCGGGAT+TGG + chr4_4:74479148-74479167 None:intergenic 50.0%
CAATTGTTGGTCCTCTCTGC+TGG - chr4_4:74479888-74479907 Msa0702720:intron 50.0%
!! CCTGGTCTTAACGTGCACTT+AGG + chr4_4:74480089-74480108 None:intergenic 50.0%
CCTAAGTGCACGTTAAGACC+AGG - chr4_4:74480086-74480105 Msa0702720:CDS 50.0%
!! CACTGGCTCATCAGGGAAAA+AGG + chr4_4:74480565-74480584 None:intergenic 50.0%
!! TCTGCTTCACTGGCTCATCA+GGG + chr4_4:74480572-74480591 None:intergenic 50.0%
!! ATCTGCTTCACTGGCTCATC+AGG + chr4_4:74480573-74480592 None:intergenic 50.0%
ATAGCGAAGACAGCAGGCAT+GGG + chr4_4:74481325-74481344 None:intergenic 50.0%
CAGGGAGATCTCACTAGAAG+AGG - chr4_4:74481384-74481403 Msa0702720:CDS 50.0%
GAGATCTCACTAGAAGAGGC+TGG - chr4_4:74481388-74481407 Msa0702720:CDS 50.0%
AAGAGGCTGGCAGTAGTTAC+AGG - chr4_4:74481401-74481420 Msa0702720:CDS 50.0%
GGTACGATGAGGAAGTCTGA+AGG - chr4_4:74481675-74481694 Msa0702720:intron 50.0%
GATGCTCTCTTGCTACCTTC+TGG - chr4_4:74481788-74481807 Msa0702720:intron 50.0%
ACATGACAACTGAGGGGATC+TGG + chr4_4:74482038-74482057 None:intergenic 50.0%
TAGTGTCTATCTCACCCCAG+AGG + chr4_4:74482092-74482111 None:intergenic 50.0%
ACACTACCTGGATCTGAGCT+TGG - chr4_4:74482106-74482125 Msa0702720:intron 50.0%
CACTACCTGGATCTGAGCTT+GGG - chr4_4:74482107-74482126 Msa0702720:intron 50.0%
! GTTCTAGGCATACCCCACAA+AGG + chr4_4:74482637-74482656 None:intergenic 50.0%
TCAAGATGTCCCAAAGCCTG+TGG - chr4_4:74482942-74482961 Msa0702720:intron 50.0%
GAGCTAAGGCAGGATCAACA+TGG + chr4_4:74483142-74483161 None:intergenic 50.0%
TCTGGCTGGAAACTTGTGCA+CGG - chr4_4:74483469-74483488 Msa0702720:intron 50.0%
CTTTCAGCTGTAGTTGGCAC+AGG - chr4_4:74483526-74483545 Msa0702720:CDS 50.0%
GGGGGATGTACTCACGAAAT+GGG - chr4_4:74483879-74483898 Msa0702720:intron 50.0%
GGGGATGTACTCACGAAATG+GGG - chr4_4:74483880-74483899 Msa0702720:intron 50.0%
GGGATGTACTCACGAAATGG+GGG - chr4_4:74483881-74483900 Msa0702720:intron 50.0%
TGTACTCACGAAATGGGGGT+AGG - chr4_4:74483885-74483904 Msa0702720:intron 50.0%
CAGTTCTCTCTCTCTCTCTC+TGG - chr4_4:74483950-74483969 Msa0702720:intron 50.0%
TTCTTCTCAGGAATGGGACG+AGG + chr4_4:74484260-74484279 None:intergenic 50.0%
GTCCCATTCCTGAGAAGAAG+TGG - chr4_4:74484261-74484280 Msa0702720:intron 50.0%
! GTGAGGTACCACTTCTTCTC+AGG + chr4_4:74484272-74484291 None:intergenic 50.0%
! GAGAAACCACTGAAGGTGTG+AGG + chr4_4:74484289-74484308 None:intergenic 50.0%
CCCATCAGAGAAACCACTGA+AGG + chr4_4:74484296-74484315 None:intergenic 50.0%
TCAGTGGTTTCTCTGATGGG+AGG - chr4_4:74484296-74484315 Msa0702720:intron 50.0%
CTGAGAACTACCACTGGCAA+TGG - chr4_4:74484677-74484696 Msa0702720:intron 50.0%
AGAAAGACGTCCATTGCCAG+TGG + chr4_4:74484690-74484709 None:intergenic 50.0%
TTCCAATGTGCAGGAGCTGT+AGG - chr4_4:74484973-74484992 Msa0702720:CDS 50.0%
AACCTACAGCTCCTGCACAT+TGG + chr4_4:74484978-74484997 None:intergenic 50.0%
! GCAGGAGCTGTAGGTTTTCT+TGG - chr4_4:74484982-74485001 Msa0702720:CDS 50.0%
! TCAAACCGGAGCACTTCCAT+AGG - chr4_4:74485065-74485084 Msa0702720:intron 50.0%
!! ACAAGCCTATGGAAGTGCTC+CGG + chr4_4:74485073-74485092 None:intergenic 50.0%
!! CACTTCCATAGGCTTGTTGC+TGG - chr4_4:74485076-74485095 Msa0702720:intron 50.0%
TGTCTCCAGCAACAAGCCTA+TGG + chr4_4:74485084-74485103 None:intergenic 50.0%
ACAGCCGGGGAAAAAATCTC+AGG + chr4_4:74485219-74485238 None:intergenic 50.0%
TCGGGATTGGAAGGACATGG+TGG + chr4_4:74479135-74479154 None:intergenic 55.0%
GGATCGGGATTGGAAGGACA+TGG + chr4_4:74479138-74479157 None:intergenic 55.0%
ACTGCTGCACACAAATGGGG+TGG - chr4_4:74480785-74480804 Msa0702720:CDS 55.0%
GCACACAAATGGGGTGGTCT+TGG - chr4_4:74480791-74480810 Msa0702720:CDS 55.0%
! CAAATGGGGTGGTCTTGGTG+AGG - chr4_4:74480796-74480815 Msa0702720:CDS 55.0%
! GGTGGTCTTGGTGAGGTTCT+GGG - chr4_4:74480803-74480822 Msa0702720:CDS 55.0%
ATGGGGCTGTGTCCTCTGAA+AGG + chr4_4:74481307-74481326 None:intergenic 55.0%
TAGCGAAGACAGCAGGCATG+GGG + chr4_4:74481324-74481343 None:intergenic 55.0%
GATAGCGAAGACAGCAGGCA+TGG + chr4_4:74481326-74481345 None:intergenic 55.0%
GGGGTGAGATAGACACTACC+TGG - chr4_4:74482094-74482113 Msa0702720:intron 55.0%
TGACACCCAAGCTCAGATCC+AGG + chr4_4:74482115-74482134 None:intergenic 55.0%
AGATGTCCCAAAGCCTGTGG+AGG - chr4_4:74482945-74482964 Msa0702720:intron 55.0%
TTCCTGCCTCCACAGGCTTT+GGG + chr4_4:74482954-74482973 None:intergenic 55.0%
TTTCCTGCCTCCACAGGCTT+TGG + chr4_4:74482955-74482974 None:intergenic 55.0%
! ACGCCGCTTTGATGTCTACC+TGG - chr4_4:74483029-74483048 Msa0702720:intron 55.0%
CTCAGTCACAGAGCTAAGGC+AGG + chr4_4:74483152-74483171 None:intergenic 55.0%
GGGGGGATGTACTCACGAAA+TGG - chr4_4:74483878-74483897 Msa0702720:intron 55.0%
GTGGTACCTCACACCTTCAG+TGG - chr4_4:74484280-74484299 Msa0702720:intron 55.0%
AGGAAGCCTCTGGTCATGTG+TGG - chr4_4:74485116-74485135 Msa0702720:intron 55.0%
GGAAGCCTCTGGTCATGTGT+GGG - chr4_4:74485117-74485136 Msa0702720:intron 55.0%
GAAGCCTCTGGTCATGTGTG+GGG - chr4_4:74485118-74485137 Msa0702720:intron 55.0%
! GGGTGGTCTTGGTGAGGTTC+TGG - chr4_4:74480802-74480821 Msa0702720:CDS 60.0%
!! GGTCTTGGTGAGGTTCTGGG+TGG - chr4_4:74480806-74480825 Msa0702720:CDS 60.0%
CAACTGAGGGGATCTGGACC+TGG + chr4_4:74482032-74482051 None:intergenic 60.0%
AGGTGCTCAGCTAGCACTGC+TGG - chr4_4:74483546-74483565 Msa0702720:CDS 60.0%
ATGGGAGGACTGCTCCCCTT+TGG - chr4_4:74484311-74484330 Msa0702720:intron 60.0%
GGTTCCCCACACATGACCAG+AGG + chr4_4:74485125-74485144 None:intergenic 60.0%
GTCCCAAAGCCTGTGGAGGC+AGG - chr4_4:74482949-74482968 Msa0702720:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 74478883 74485485 74478883 ID=Msa0702720;Name=Msa0702720
chr4_4 mRNA 74478883 74485485 74478883 ID=Msa0702720-mRNA-1;Parent=Msa0702720;Name=Msa0702720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=254|0.63|0.83|0.91|1|1|12|432|616
chr4_4 exon 74478883 74479382 74478883 ID=Msa0702720-mRNA-1:exon:23212;Parent=Msa0702720-mRNA-1
chr4_4 exon 74479515 74479788 74479515 ID=Msa0702720-mRNA-1:exon:23211;Parent=Msa0702720-mRNA-1
chr4_4 exon 74479983 74480356 74479983 ID=Msa0702720-mRNA-1:exon:23210;Parent=Msa0702720-mRNA-1
chr4_4 exon 74480466 74480560 74480466 ID=Msa0702720-mRNA-1:exon:23209;Parent=Msa0702720-mRNA-1
chr4_4 exon 74480754 74480920 74480754 ID=Msa0702720-mRNA-1:exon:23208;Parent=Msa0702720-mRNA-1
chr4_4 exon 74481027 74481167 74481027 ID=Msa0702720-mRNA-1:exon:23207;Parent=Msa0702720-mRNA-1
chr4_4 exon 74481294 74481446 74481294 ID=Msa0702720-mRNA-1:exon:23206;Parent=Msa0702720-mRNA-1
chr4_4 exon 74481533 74481630 74481533 ID=Msa0702720-mRNA-1:exon:23205;Parent=Msa0702720-mRNA-1
chr4_4 exon 74483311 74483415 74483311 ID=Msa0702720-mRNA-1:exon:23204;Parent=Msa0702720-mRNA-1
chr4_4 exon 74483499 74483697 74483499 ID=Msa0702720-mRNA-1:exon:23203;Parent=Msa0702720-mRNA-1
chr4_4 exon 74484953 74485045 74484953 ID=Msa0702720-mRNA-1:exon:23202;Parent=Msa0702720-mRNA-1
chr4_4 exon 74485148 74485485 74485148 ID=Msa0702720-mRNA-1:exon:23201;Parent=Msa0702720-mRNA-1
chr4_4 five_prime_UTR 74485232 74485485 74485232 ID=Msa0702720-mRNA-1:five_prime_utr;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74485148 74485231 74485148 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74484953 74485045 74484953 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74483499 74483697 74483499 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74483311 74483415 74483311 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74481533 74481630 74481533 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74481294 74481446 74481294 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74481027 74481167 74481027 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74480754 74480920 74480754 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74480466 74480560 74480466 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74479983 74480356 74479983 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74479515 74479788 74479515 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 CDS 74479315 74479382 74479315 ID=Msa0702720-mRNA-1:cds;Parent=Msa0702720-mRNA-1
chr4_4 three_prime_UTR 74478883 74479314 74478883 ID=Msa0702720-mRNA-1:three_prime_utr;Parent=Msa0702720-mRNA-1
Gene Sequence

>Msa0702720

ATGTCCTTCCAATCCCGATCCATCTTCTTCCTCTTCTTCTCTCTCTTCATTTCTTCAACCTTCGCTTCAGAATCAGATCACAAGCTTTTAGCTTCGGATTTTGGTTTTGGAATTGGTTTTATGAATGTTATGGTTGTAAAGTTGCGTTTTTTAGTGTTGGATCTTACTGGGTTTTTGTATCAACGGGATGATCCTGTTAACCTTTGGGTGAACAAAGTTGGACCCTATAACAATCCACAAGAAACATACAATTATTACAGTCTCCCATTTTGCCACCCATCTAGTACTTCTACTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTTCTGGGTGGCAATGAACTCATCGACAGCCAAATTGAGATCAAGTTCCTAAGAAATGTGGATAAAACGGTCTTTTGCCAGATGGATCTTGATGATGCAAAGGTTAAACAGTTCAAGCATGCAATAGAGAATAATTACTGGTTTGAATTTTTCATGGGATATGTTGGTGAGCTACATCCTGATAAGCATAGCGATAATGGCAAGCACGTCCTTTACACACACAAGAATATTATTGTTAAATACAATAATGATCAGATCATTCATGTTAATCTCACTCAAGATGTCCCAAAGCCTGTGGAGGCAGGAAAACATTTGGATTTGACATATTCTGTCAAATGGGTTCCTACTAATATCACTTTTGGACGCCGCTTTGATGTCTACCTGGACTATCCTTTCTTTGAGCACCAGATTCACTGGTTCTCCATTTTCAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTATCAATGATATTAATGCGAACTCTAAGAAATGACTATGCAAAATATGCTCGGGAAGATGATGATTTGGAATCTCTGGTGACGGAGAGAGACGTTAGTGAAGAATCTGGCTGGAAACTTGTGCACGGTGATGTTTTTCGGCCTCCTCGCTATTTAGTTATTCTTTCAGCTGTAGTTGGCACAGGTGCTCAGCTAGCACTGCTGGTTCTTCTTGTCATCTTACTGGCTATTATTGGGATGTTGTATATTGGGCGAGGAGCAATTGTCACAACCTTCATTGTTTGTTATGCTCTCACATCGTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGGTAAAAGCTGGATTAAATCCATGATCCTTACAGCTTCTTTATTCCCATTCATGTGCTTTGGAATTGGATTTGCCTTAAACACTATTGCTATATTCTATGGGTCTCTAGCTGCTATCCCATTTGGCACAATGGTGGTTGTTTTTGTCATTTGGGCTTTCATCTCTTTCCCTCTTGCACTTCTTGGTACAGTTGTTGGAAGAAACTGGAGTGGTGCTCCAAATAATCCATGTCGTGTAAAAACTATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCTTCAGTGGTTTCTCTGATGGGAGGACTGCTCCCCTTTGGCAGCATATTTATTGAAATGTATTTTGTATTTACTTCCTTCTGGAATTACAAGGTGTACTATGTGTATGGCTTTATGCTACTGGTTTTTCTGATTCTCACCATCGTTACTGTTTGTGTGACAATTGTCGGGACATACTTTTTGTTAAATGCTGAGAACTACCACTGGCAATGGACGTCTTTCTTTTCAGCTGCCTCAACATCAGTTTATGTGTATTTATACTCAATATATTATTACTACGTGAAGACAAAGATGTCAGGGTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTTTGCGGAGCTGTAGGTTTTCTTGGTTCCAATTTGTTTGTGAGAAGGATCTACAGAAACATCAAGTGTGATTAA
Protein sequence

>Msa0702720

MSFQSRSIFFLFFSLFISSTFASESDHKLLASDFGFGIGFMNVMVVKLRFLVLDLTGFLYQRDDPVNLWVNKVGPYNNPQETYNYYSLPFCHPSSTSTAAHKWGGLGEVLGGNELIDSQIEIKFLRNVDKTVFCQMDLDDAKVKQFKHAIENNYWFEFFMGYVGELHPDKHSDNGKHVLYTHKNIIVKYNNDQIIHVNLTQDVPKPVEAGKHLDLTYSVKWVPTNITFGRRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLVTERDVSEESGWKLVHGDVFRPPRYLVILSAVVGTGAQLALLVLLVILLAIIGMLYIGRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKSWIKSMILTASLFPFMCFGIGFALNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILTIVTVCVTIVGTYFLLNAENYHWQWTSFFSAASTSVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFSLGLGILCGAVGFLGSNLFVRRIYRNIKCD*