Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837320 | XP_003611914.3 | 97.384 | 344 | 8 | 1 | 6 | 349 | 1 | 343 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837320 | sp|O64823|MCU2_ARATH | 48.810 | 336 | 144 | 7 | 6 | 328 | 1 | 321 | 5.84e-110 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837320 | G7KAV9 | 97.384 | 344 | 8 | 1 | 6 | 349 | 1 | 343 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0837320 | 0.802465 | 5.539352e-49 | -8.615850e-47 |
| Msa0092220 | Msa0837320 | 0.806438 | 8.224471e-50 | -8.615850e-47 |
| Msa0612590 | Msa0837320 | 0.862351 | 5.389379e-64 | -8.615850e-47 |
| Msa0653230 | Msa0837320 | 0.808554 | 2.926045e-50 | -8.615850e-47 |
| Msa0695650 | Msa0837320 | 0.859290 | 4.580601e-63 | -8.615850e-47 |
| Msa0716150 | Msa0837320 | 0.875119 | 3.961793e-68 | -8.615850e-47 |
| Msa0798790 | Msa0837320 | 0.948169 | 1.607716e-106 | -8.615850e-47 |
| Msa0837320 | Msa0888980 | 0.803294 | 3.733705e-49 | -8.615850e-47 |
| Msa0837320 | Msa1070800 | 0.811247 | 7.700571e-51 | -8.615850e-47 |
| Msa0837320 | Msa1118800 | 0.803445 | 3.474167e-49 | -8.615850e-47 |
| Msa0837320 | Msa1158620 | 0.828354 | 9.419497e-55 | -8.615850e-47 |
| Msa0837320 | Msa1405510 | 0.805986 | 1.024299e-49 | -8.615850e-47 |
| Msa0837320 | Msa1407350 | 0.864229 | 1.412971e-64 | -8.615850e-47 |
| Msa0204150 | Msa0837320 | 0.800355 | 1.498482e-48 | -8.615850e-47 |
| Msa0324820 | Msa0837320 | 0.801242 | 9.874563e-49 | -8.615850e-47 |
| Msa0557910 | Msa0837320 | 0.835231 | 1.892761e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837320 | MtrunA17_Chr8g0373631 | 54.054 | 370 | 131 | 8 | 6 | 348 | 1 | 358 | 2.63e-131 | 379 |
| Msa0837320 | MtrunA17_Chr5g0403551 | 93.939 | 198 | 11 | 1 | 1 | 198 | 19 | 215 | 3.39e-122 | 350 |
| Msa0837320 | MtrunA17_Chr5g0403541 | 98.462 | 130 | 2 | 0 | 220 | 349 | 1 | 130 | 1.35e-93 | 275 |
| Msa0837320 | MtrunA17_Chr1g0154611 | 40.663 | 332 | 184 | 4 | 6 | 330 | 1 | 326 | 5.10e-82 | 253 |
| Msa0837320 | MtrunA17_Chr3g0108861 | 34.247 | 219 | 142 | 1 | 115 | 331 | 99 | 317 | 1.87e-45 | 158 |
| Msa0837320 | MtrunA17_Chr5g0433141 | 33.023 | 215 | 142 | 1 | 115 | 327 | 92 | 306 | 1.03e-41 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837320 | AT2G23790.1 | 48.810 | 336 | 144 | 7 | 6 | 328 | 1 | 321 | 5.94e-111 | 327 |
| Msa0837320 | AT4G36820.1 | 46.547 | 333 | 152 | 6 | 9 | 329 | 5 | 323 | 2.09e-101 | 303 |
| Msa0837320 | AT5G66650.1 | 45.427 | 328 | 164 | 4 | 6 | 331 | 1 | 315 | 1.07e-95 | 287 |
| Msa0837320 | AT5G42610.1 | 42.642 | 265 | 140 | 4 | 70 | 326 | 21 | 281 | 1.68e-70 | 222 |
| Msa0837320 | AT1G57610.2 | 35.071 | 211 | 132 | 4 | 119 | 325 | 46 | 255 | 2.68e-40 | 144 |
| Msa0837320 | AT1G57610.1 | 35.071 | 211 | 132 | 4 | 119 | 325 | 46 | 255 | 2.68e-40 | 144 |
| Msa0837320 | AT1G09575.1 | 31.858 | 226 | 150 | 3 | 104 | 326 | 36 | 260 | 1.76e-36 | 134 |
| Msa0837320 | AT1G09575.2 | 31.858 | 226 | 150 | 3 | 104 | 326 | 36 | 260 | 1.76e-36 | 134 |
| Msa0837320 | AT1G57610.3 | 34.783 | 161 | 100 | 4 | 119 | 275 | 46 | 205 | 5.94e-24 | 98.2 |
| Msa0837320 | AT1G57610.4 | 34.783 | 161 | 100 | 4 | 119 | 275 | 46 | 205 | 5.94e-24 | 98.2 |
Find 78 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTGATCGTGAGCTTT+GGG | 0.230410 | 5_4:-11296640 | Msa0837320:CDS |
| GGGAGGTTTGGGTTTCATTA+TGG | 0.238660 | 5_4:-11296619 | Msa0837320:CDS |
| CGTGAGCTTTGGGGAGGTTT+GGG | 0.254572 | 5_4:-11296630 | Msa0837320:CDS |
| TATTAATGAGACTCACCTTT+TGG | 0.277484 | 5_4:-11296584 | Msa0837320:CDS |
| CCTTGGTTGATCGTGAGCTT+TGG | 0.301670 | 5_4:-11296641 | Msa0837320:CDS |
| TTGAACCCGGTTTGTTGTTT+CGG | 0.305567 | 5_4:+11298017 | None:intergenic |
| AAGCAGACTTTGGAGTGTTT+TGG | 0.306984 | 5_4:+11296755 | None:intergenic |
| TCTGCGGCTGTGATTATTCT+TGG | 0.316398 | 5_4:-11297690 | Msa0837320:CDS |
| TCTCCTGAACCAGGCGATAA+TGG | 0.343587 | 5_4:-11298080 | Msa0837320:CDS |
| TTCTATGAATTTATCATCAA+TGG | 0.344465 | 5_4:-11298222 | Msa0837320:exon |
| TCGTGAGCTTTGGGGAGGTT+TGG | 0.348113 | 5_4:-11296631 | Msa0837320:CDS |
| TTCAGCTTCTCCATCAGGTT+TGG | 0.348246 | 5_4:+11297978 | None:intergenic |
| AAAGAGTTGTGTAACGGTTT+CGG | 0.363987 | 5_4:-11297787 | Msa0837320:CDS |
| AAGAAAAGAATATGAAGAAA+TGG | 0.369837 | 5_4:-11296700 | Msa0837320:CDS |
| CAAAACGCCGGCGGAGAAAC+CGG | 0.374721 | 5_4:-11297907 | Msa0837320:CDS |
| GAATCTGATACCTTTATTCC+CGG | 0.374775 | 5_4:+11296726 | None:intergenic |
| GCGCCATTATCGCCTGGTTC+AGG | 0.375488 | 5_4:+11298077 | None:intergenic |
| GCTTCCTACACCGGGAATAA+AGG | 0.384345 | 5_4:-11296736 | Msa0837320:CDS |
| TGTGTTTCTTAGACCTGAAC+AGG | 0.390526 | 5_4:-11297661 | Msa0837320:intron |
| TTGTTGTTTCGGTTCAAAAC+CGG | 0.401588 | 5_4:+11298028 | None:intergenic |
| GGAGCTTACTTGGGATGTAA+TGG | 0.424436 | 5_4:-11296562 | Msa0837320:CDS |
| GGATGTTAAATAGAAGCAAA+TGG | 0.426288 | 5_4:+11296536 | None:intergenic |
| TCTAAAAGAAGGTTCTTTCC+CGG | 0.428851 | 5_4:+11296476 | None:intergenic |
| CTCACGATCAACCAAGGCTT+CGG | 0.444848 | 5_4:+11296647 | None:intergenic |
| GGCATCGCCGGTTTCTCCGC+CGG | 0.448751 | 5_4:+11297900 | None:intergenic |
| TTCAGGAGAAATGTCAGATT+CGG | 0.458900 | 5_4:+11298094 | None:intergenic |
| CCGTCCTCCTTCGGCATCGC+CGG | 0.460693 | 5_4:+11297888 | None:intergenic |
| CCGGTGTAGGAAGCAGACTT+TGG | 0.466737 | 5_4:+11296745 | None:intergenic |
| AGATTCATTCACAAACGAAC+CGG | 0.473805 | 5_4:-11298047 | Msa0837320:CDS |
| TATACATTCTTCCTCAAGAC+CGG | 0.484488 | 5_4:-11296495 | Msa0837320:CDS |
| CAAAATTGTGAAGCTTCATA+AGG | 0.484983 | 5_4:+11296415 | None:intergenic |
| TCAAACATAGGAGGAACATT+GGG | 0.496062 | 5_4:+11296354 | None:intergenic |
| TTGAATGCGCCATTATCGCC+TGG | 0.497086 | 5_4:+11298071 | None:intergenic |
| ACATCCATGTACTTCATGAC+TGG | 0.497631 | 5_4:-11296519 | Msa0837320:CDS |
| ACGCTAACACCGTCCTCCTT+CGG | 0.498436 | 5_4:+11297879 | None:intergenic |
| TTTGAACCGAAACAACAAAC+CGG | 0.498499 | 5_4:-11298023 | Msa0837320:CDS |
| GATGTTAAATAGAAGCAAAT+GGG | 0.503470 | 5_4:+11296537 | None:intergenic |
| CGATGAAGAAGCCGAAGCCT+TGG | 0.509562 | 5_4:-11296658 | Msa0837320:CDS |
| ATCAAACATAGGAGGAACAT+TGG | 0.516274 | 5_4:+11296353 | None:intergenic |
| AGGAATCGTATTCGGTTGGA+TGG | 0.519037 | 5_4:-11297939 | Msa0837320:CDS |
| ACAATGGTAGGAATCGTATT+CGG | 0.527920 | 5_4:-11297947 | Msa0837320:CDS |
| ATCCCAAGTAAGCTCCCAAA+AGG | 0.531115 | 5_4:+11296569 | None:intergenic |
| CCAAAGTCTGCTTCCTACAC+CGG | 0.541189 | 5_4:-11296745 | Msa0837320:CDS |
| GGAGAAACCGGCGATGCCGA+AGG | 0.544555 | 5_4:-11297895 | Msa0837320:CDS |
| GGCTTCGGCTTCTTCATCGA+TGG | 0.544645 | 5_4:+11296662 | None:intergenic |
| TGAAAACAATGGACAATGGT+AGG | 0.544936 | 5_4:-11297959 | Msa0837320:CDS |
| AATTAGAGATGGTGAAATCA+AGG | 0.551504 | 5_4:-11297824 | Msa0837320:CDS |
| TTCAGATGTGAGAGCAGTGG+AGG | 0.554859 | 5_4:+11296329 | None:intergenic |
| CTTAACCGCTTGATCATGAT+CGG | 0.561818 | 5_4:+11297734 | None:intergenic |
| GATACCTTTATTCCCGGTGT+AGG | 0.564773 | 5_4:+11296732 | None:intergenic |
| TTGAACCGAAACAACAAACC+GGG | 0.566687 | 5_4:-11298022 | Msa0837320:CDS |
| CAAAGTCTGCTTCCTACACC+GGG | 0.576474 | 5_4:-11296744 | Msa0837320:CDS |
| GCTTCATCAACCAAACCTGA+TGG | 0.578108 | 5_4:-11297988 | Msa0837320:CDS |
| TCTGACATTTCTCCTGAACC+AGG | 0.581836 | 5_4:-11298089 | Msa0837320:CDS |
| TGGTAGGAATCGTATTCGGT+TGG | 0.582305 | 5_4:-11297943 | Msa0837320:CDS |
| ATACATTCTTCCTCAAGACC+GGG | 0.582455 | 5_4:-11296494 | Msa0837320:CDS |
| CCGGCGATGCCGAAGGAGGA+CGG | 0.583995 | 5_4:-11297888 | Msa0837320:CDS |
| ATCATCAAAGAGTTGTGTAA+CGG | 0.585112 | 5_4:-11297793 | Msa0837320:CDS |
| ATGAAGCTCTGATTTGAACC+CGG | 0.585317 | 5_4:+11298004 | None:intergenic |
| GAAACCGGCGATGCCGAAGG+AGG | 0.600175 | 5_4:-11297892 | Msa0837320:CDS |
| AGATGTGAAGAAATTGTTGA+AGG | 0.600974 | 5_4:-11297853 | Msa0837320:CDS |
| GTTGATCGTGAGCTTTGGGG+AGG | 0.603066 | 5_4:-11296636 | Msa0837320:CDS |
| TTGTTCCGATCATGATCAAG+CGG | 0.606479 | 5_4:-11297739 | Msa0837320:CDS |
| GCAGTGGAGGAATCAAACAT+AGG | 0.610101 | 5_4:+11296342 | None:intergenic |
| ATAACCAGTCATGAAGTACA+TGG | 0.615299 | 5_4:+11296515 | None:intergenic |
| AAGGTTCTTTCCCGGTCTTG+AGG | 0.616769 | 5_4:+11296484 | None:intergenic |
| TTAAGAGAACGCTTGCACAA+CGG | 0.623956 | 5_4:-11298196 | Msa0837320:CDS |
| CCAAAGCTCACGATCAACCA+AGG | 0.631926 | 5_4:+11296641 | None:intergenic |
| GAAGATGCTTGATGATTCTG+CGG | 0.634104 | 5_4:-11297706 | Msa0837320:CDS |
| AAGGAGGACGGTGTTAGCGT+CGG | 0.634588 | 5_4:-11297876 | Msa0837320:CDS |
| GTGGAGGAATCAAACATAGG+AGG | 0.637959 | 5_4:+11296345 | None:intergenic |
| GATGGAGAAGCTGAAAACAA+TGG | 0.643760 | 5_4:-11297970 | Msa0837320:CDS |
| TGGATTGATCATCAAAACGC+CGG | 0.650680 | 5_4:-11297919 | Msa0837320:CDS |
| TTGGTTGATCGTGAGCTTTG+GGG | 0.652972 | 5_4:-11296639 | Msa0837320:CDS |
| AAGCTGAAAACAATGGACAA+TGG | 0.660072 | 5_4:-11297963 | Msa0837320:CDS |
| TGTGAAGAAATTGTTGAAGG+TGG | 0.674048 | 5_4:-11297850 | Msa0837320:CDS |
| GAAGGTGGCGCAATTAGAGA+TGG | 0.677578 | 5_4:-11297835 | Msa0837320:CDS |
| ATTGATCATCAAAACGCCGG+CGG | 0.739309 | 5_4:-11297916 | Msa0837320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTTATTGATTATT+GGG | - | chr5_4:11297001-11297020 | Msa0837320:intron | 10.0% |
| !!! | TGTTTTTTTTATTGATTATT+GGG | - | chr5_4:11297001-11297020 | Msa0837320:intron | 10.0% |
| !!! | GTGTTTTTTTTATTGATTAT+TGG | - | chr5_4:11297000-11297019 | Msa0837320:intron | 15.0% |
| !!! | TACATGTTTTATTTAATTTG+TGG | - | chr5_4:11297028-11297047 | Msa0837320:intron | 15.0% |
| !!! | ACATGTTTTATTTAATTTGT+GGG | - | chr5_4:11297029-11297048 | Msa0837320:intron | 15.0% |
| !! | TATAGTTAATTCCATTTATT+TGG | - | chr5_4:11297132-11297151 | Msa0837320:intron | 15.0% |
| !!! | TTTTTTTTCCTATTTACTTT+TGG | + | chr5_4:11297754-11297773 | None:intergenic | 15.0% |
| !!! | GTGTTTTTTTTATTGATTAT+TGG | - | chr5_4:11297000-11297019 | Msa0837320:intron | 15.0% |
| !!! | TACATGTTTTATTTAATTTG+TGG | - | chr5_4:11297028-11297047 | Msa0837320:intron | 15.0% |
| !!! | ACATGTTTTATTTAATTTGT+GGG | - | chr5_4:11297029-11297048 | Msa0837320:intron | 15.0% |
| !! | TATAGTTAATTCCATTTATT+TGG | - | chr5_4:11297132-11297151 | Msa0837320:intron | 15.0% |
| !!! | TTTTTTTTCCTATTTACTTT+TGG | + | chr5_4:11297754-11297773 | None:intergenic | 15.0% |
| !! | TTCTATGAATTTATCATCAA+TGG | - | chr5_4:11296351-11296370 | Msa0837320:CDS | 20.0% |
| !! | GTAATAATGTAATGTAATGA+TGG | - | chr5_4:11297066-11297085 | Msa0837320:intron | 20.0% |
| !! | ATTATCAGTTTCCAAATAAA+TGG | + | chr5_4:11297146-11297165 | None:intergenic | 20.0% |
| !! | CCTAGTCTAAAAATAATTAA+GGG | + | chr5_4:11297301-11297320 | None:intergenic | 20.0% |
| !! | TCCTAGTCTAAAAATAATTA+AGG | + | chr5_4:11297302-11297321 | None:intergenic | 20.0% |
| !! | AAGAAAAACCAAAAGTAAAT+AGG | - | chr5_4:11297743-11297762 | Msa0837320:CDS | 20.0% |
| !! | AAGAAAAGAATATGAAGAAA+TGG | - | chr5_4:11297873-11297892 | Msa0837320:CDS | 20.0% |
| !! | TTCTATGAATTTATCATCAA+TGG | - | chr5_4:11296351-11296370 | Msa0837320:CDS | 20.0% |
| !! | GTAATAATGTAATGTAATGA+TGG | - | chr5_4:11297066-11297085 | Msa0837320:intron | 20.0% |
| !! | ATTATCAGTTTCCAAATAAA+TGG | + | chr5_4:11297146-11297165 | None:intergenic | 20.0% |
| !! | CCTAGTCTAAAAATAATTAA+GGG | + | chr5_4:11297301-11297320 | None:intergenic | 20.0% |
| !! | TCCTAGTCTAAAAATAATTA+AGG | + | chr5_4:11297302-11297321 | None:intergenic | 20.0% |
| !! | AAGAAAAACCAAAAGTAAAT+AGG | - | chr5_4:11297743-11297762 | Msa0837320:CDS | 20.0% |
| !! | AAGAAAAGAATATGAAGAAA+TGG | - | chr5_4:11297873-11297892 | Msa0837320:CDS | 20.0% |
| ! | AAAGAAAAATTTACCTGTTC+AGG | + | chr5_4:11296928-11296947 | None:intergenic | 25.0% |
| !! | ATGTAATGTAATGATGGAAA+TGG | - | chr5_4:11297072-11297091 | Msa0837320:intron | 25.0% |
| !!! | CCCTTAATTATTTTTAGACT+AGG | - | chr5_4:11297298-11297317 | Msa0837320:intron | 25.0% |
| ! | TACCATTAATTGAAAGTTAG+AGG | - | chr5_4:11297372-11297391 | Msa0837320:intron | 25.0% |
| ! | ACCATTAATTGAAAGTTAGA+GGG | - | chr5_4:11297373-11297392 | Msa0837320:intron | 25.0% |
| ! | AAGTGAGTTTGATGAAATTA+TGG | - | chr5_4:11297547-11297566 | Msa0837320:intron | 25.0% |
| !!! | GATTTTGACAAAAGTTACTT+TGG | - | chr5_4:11297579-11297598 | Msa0837320:intron | 25.0% |
| !! | TTCTAATATATGTCCCTTTT+AGG | - | chr5_4:11297671-11297690 | Msa0837320:CDS | 25.0% |
| !!! | TTACTTTTGGTTTTTCTTCT+AGG | + | chr5_4:11297741-11297760 | None:intergenic | 25.0% |
| !! | CACAAAATTTTACAGAGTTT+GGG | + | chr5_4:11297788-11297807 | None:intergenic | 25.0% |
| !! | TCACAAAATTTTACAGAGTT+TGG | + | chr5_4:11297789-11297808 | None:intergenic | 25.0% |
| !! | TCTGTAAAATTTTGTGATAC+AGG | - | chr5_4:11297792-11297811 | Msa0837320:CDS | 25.0% |
| ! | GATGTTAAATAGAAGCAAAT+GGG | + | chr5_4:11298039-11298058 | None:intergenic | 25.0% |
| ! | AAAGAAAAATTTACCTGTTC+AGG | + | chr5_4:11296928-11296947 | None:intergenic | 25.0% |
| !! | ATGTAATGTAATGATGGAAA+TGG | - | chr5_4:11297072-11297091 | Msa0837320:intron | 25.0% |
| !!! | CCCTTAATTATTTTTAGACT+AGG | - | chr5_4:11297298-11297317 | Msa0837320:intron | 25.0% |
| ! | TACCATTAATTGAAAGTTAG+AGG | - | chr5_4:11297372-11297391 | Msa0837320:intron | 25.0% |
| ! | ACCATTAATTGAAAGTTAGA+GGG | - | chr5_4:11297373-11297392 | Msa0837320:intron | 25.0% |
| ! | AAGTGAGTTTGATGAAATTA+TGG | - | chr5_4:11297547-11297566 | Msa0837320:intron | 25.0% |
| !!! | GATTTTGACAAAAGTTACTT+TGG | - | chr5_4:11297579-11297598 | Msa0837320:intron | 25.0% |
| !! | TTCTAATATATGTCCCTTTT+AGG | - | chr5_4:11297671-11297690 | Msa0837320:CDS | 25.0% |
| !!! | TTACTTTTGGTTTTTCTTCT+AGG | + | chr5_4:11297741-11297760 | None:intergenic | 25.0% |
| !! | CACAAAATTTTACAGAGTTT+GGG | + | chr5_4:11297788-11297807 | None:intergenic | 25.0% |
| !! | TCACAAAATTTTACAGAGTT+TGG | + | chr5_4:11297789-11297808 | None:intergenic | 25.0% |
| !! | TCTGTAAAATTTTGTGATAC+AGG | - | chr5_4:11297792-11297811 | Msa0837320:CDS | 25.0% |
| ! | GATGTTAAATAGAAGCAAAT+GGG | + | chr5_4:11298039-11298058 | None:intergenic | 25.0% |
| ! | GAGATTTTGTGATGAGATTT+TGG | + | chr5_4:11296416-11296435 | None:intergenic | 30.0% |
| AGATGTGAAGAAATTGTTGA+AGG | - | chr5_4:11296720-11296739 | Msa0837320:CDS | 30.0% | |
| AATTAGAGATGGTGAAATCA+AGG | - | chr5_4:11296749-11296768 | Msa0837320:CDS | 30.0% | |
| ATCATCAAAGAGTTGTGTAA+CGG | - | chr5_4:11296780-11296799 | Msa0837320:intron | 30.0% | |
| AAATGGTGAAGATCAAAGAT+AGG | - | chr5_4:11297089-11297108 | Msa0837320:intron | 30.0% | |
| ! | AACAATGTTTCATTTTCCTG+TGG | + | chr5_4:11297199-11297218 | None:intergenic | 30.0% |
| !! | TGTTTCGAGAAAAGTGTTAA+AGG | - | chr5_4:11297218-11297237 | Msa0837320:intron | 30.0% |
| ACCCTCTAACTTTCAATTAA+TGG | + | chr5_4:11297377-11297396 | None:intergenic | 30.0% | |
| !! | TTTATTTTCCAATCCTCTCT+TGG | - | chr5_4:11297432-11297451 | Msa0837320:intron | 30.0% |
| TTAAAAAGCTTAACCAAGAG+AGG | + | chr5_4:11297448-11297467 | None:intergenic | 30.0% | |
| TCATCTAAACATACACTTGA+TGG | - | chr5_4:11297626-11297645 | Msa0837320:intron | 30.0% | |
| CTTCACAACTATACCTAAAA+GGG | + | chr5_4:11297687-11297706 | None:intergenic | 30.0% | |
| ACTTCACAACTATACCTAAA+AGG | + | chr5_4:11297688-11297707 | None:intergenic | 30.0% | |
| AGAAATGGAGAAAAAGAAGT+TGG | - | chr5_4:11297888-11297907 | Msa0837320:CDS | 30.0% | |
| ! | TATTAATGAGACTCACCTTT+TGG | - | chr5_4:11297989-11298008 | Msa0837320:CDS | 30.0% |
| ! | ATTAATGAGACTCACCTTTT+GGG | - | chr5_4:11297990-11298009 | Msa0837320:CDS | 30.0% |
| GGATGTTAAATAGAAGCAAA+TGG | + | chr5_4:11298040-11298059 | None:intergenic | 30.0% | |
| ! | TCGTAAAAACCTCTAAAAGA+AGG | + | chr5_4:11298111-11298130 | None:intergenic | 30.0% |
| CAAAATTGTGAAGCTTCATA+AGG | + | chr5_4:11298161-11298180 | None:intergenic | 30.0% | |
| ! | GAGATTTTGTGATGAGATTT+TGG | + | chr5_4:11296416-11296435 | None:intergenic | 30.0% |
| AGATGTGAAGAAATTGTTGA+AGG | - | chr5_4:11296720-11296739 | Msa0837320:CDS | 30.0% | |
| AATTAGAGATGGTGAAATCA+AGG | - | chr5_4:11296749-11296768 | Msa0837320:CDS | 30.0% | |
| ATCATCAAAGAGTTGTGTAA+CGG | - | chr5_4:11296780-11296799 | Msa0837320:intron | 30.0% | |
| AAATGGTGAAGATCAAAGAT+AGG | - | chr5_4:11297089-11297108 | Msa0837320:intron | 30.0% | |
| ! | AACAATGTTTCATTTTCCTG+TGG | + | chr5_4:11297199-11297218 | None:intergenic | 30.0% |
| !! | TGTTTCGAGAAAAGTGTTAA+AGG | - | chr5_4:11297218-11297237 | Msa0837320:intron | 30.0% |
| ACCCTCTAACTTTCAATTAA+TGG | + | chr5_4:11297377-11297396 | None:intergenic | 30.0% | |
| !! | TTTATTTTCCAATCCTCTCT+TGG | - | chr5_4:11297432-11297451 | Msa0837320:intron | 30.0% |
| TTAAAAAGCTTAACCAAGAG+AGG | + | chr5_4:11297448-11297467 | None:intergenic | 30.0% | |
| TCATCTAAACATACACTTGA+TGG | - | chr5_4:11297626-11297645 | Msa0837320:intron | 30.0% | |
| CTTCACAACTATACCTAAAA+GGG | + | chr5_4:11297687-11297706 | None:intergenic | 30.0% | |
| ACTTCACAACTATACCTAAA+AGG | + | chr5_4:11297688-11297707 | None:intergenic | 30.0% | |
| AGAAATGGAGAAAAAGAAGT+TGG | - | chr5_4:11297888-11297907 | Msa0837320:CDS | 30.0% | |
| ! | TATTAATGAGACTCACCTTT+TGG | - | chr5_4:11297989-11298008 | Msa0837320:CDS | 30.0% |
| ! | ATTAATGAGACTCACCTTTT+GGG | - | chr5_4:11297990-11298009 | Msa0837320:CDS | 30.0% |
| GGATGTTAAATAGAAGCAAA+TGG | + | chr5_4:11298040-11298059 | None:intergenic | 30.0% | |
| ! | TCGTAAAAACCTCTAAAAGA+AGG | + | chr5_4:11298111-11298130 | None:intergenic | 30.0% |
| CAAAATTGTGAAGCTTCATA+AGG | + | chr5_4:11298161-11298180 | None:intergenic | 30.0% | |
| !!! | TTCGGATTTTGAAACACTGA+CGG | + | chr5_4:11296464-11296483 | None:intergenic | 35.0% |
| TTCAGGAGAAATGTCAGATT+CGG | + | chr5_4:11296482-11296501 | None:intergenic | 35.0% | |
| AGATTCATTCACAAACGAAC+CGG | - | chr5_4:11296526-11296545 | Msa0837320:CDS | 35.0% | |
| !! | TTGTTGTTTCGGTTCAAAAC+CGG | + | chr5_4:11296548-11296567 | None:intergenic | 35.0% |
| TTTGAACCGAAACAACAAAC+CGG | - | chr5_4:11296550-11296569 | Msa0837320:CDS | 35.0% | |
| AAGCTGAAAACAATGGACAA+TGG | - | chr5_4:11296610-11296629 | Msa0837320:CDS | 35.0% | |
| TGAAAACAATGGACAATGGT+AGG | - | chr5_4:11296614-11296633 | Msa0837320:CDS | 35.0% | |
| ACAATGGTAGGAATCGTATT+CGG | - | chr5_4:11296626-11296645 | Msa0837320:CDS | 35.0% | |
| TGTGAAGAAATTGTTGAAGG+TGG | - | chr5_4:11296723-11296742 | Msa0837320:CDS | 35.0% | |
| AAAGAGTTGTGTAACGGTTT+CGG | - | chr5_4:11296786-11296805 | Msa0837320:intron | 35.0% | |
| !! | TAATTTGTGGGTTGATACAG+AGG | - | chr5_4:11297041-11297060 | Msa0837320:intron | 35.0% |
| !! | AATTTGTGGGTTGATACAGA+GGG | - | chr5_4:11297042-11297061 | Msa0837320:intron | 35.0% |
| !!! | TTCTCGTTTTTTTCTTCCAC+AGG | - | chr5_4:11297180-11297199 | Msa0837320:intron | 35.0% |
| ATAGTGATGAATGAAAGCTC+TGG | + | chr5_4:11297259-11297278 | None:intergenic | 35.0% | |
| AATCCTCCTTGATTGAATCT+AGG | + | chr5_4:11297400-11297419 | None:intergenic | 35.0% | |
| AATCAAGGAGGATTCACAAT+TGG | - | chr5_4:11297406-11297425 | Msa0837320:intron | 35.0% | |
| ATCAAGGAGGATTCACAATT+GGG | - | chr5_4:11297407-11297426 | Msa0837320:intron | 35.0% | |
| ATGCCATTACCTTTAACCTA+AGG | + | chr5_4:11297490-11297509 | None:intergenic | 35.0% | |
| TTAAGTTAGACATGCGTCTT+TGG | - | chr5_4:11297519-11297538 | Msa0837320:intron | 35.0% | |
| ! | ACATACACTTGATGGTTCAT+AGG | - | chr5_4:11297634-11297653 | Msa0837320:intron | 35.0% |
| GAATCTGATACCTTTATTCC+CGG | + | chr5_4:11297850-11297869 | None:intergenic | 35.0% | |
| ATAACCAGTCATGAAGTACA+TGG | + | chr5_4:11298061-11298080 | None:intergenic | 35.0% | |
| TATACATTCTTCCTCAAGAC+CGG | - | chr5_4:11298078-11298097 | Msa0837320:CDS | 35.0% | |
| TCTAAAAGAAGGTTCTTTCC+CGG | + | chr5_4:11298100-11298119 | None:intergenic | 35.0% | |
| TCAAACATAGGAGGAACATT+GGG | + | chr5_4:11298222-11298241 | None:intergenic | 35.0% | |
| ATCAAACATAGGAGGAACAT+TGG | + | chr5_4:11298223-11298242 | None:intergenic | 35.0% | |
| !!! | TTCGGATTTTGAAACACTGA+CGG | + | chr5_4:11296464-11296483 | None:intergenic | 35.0% |
| TTCAGGAGAAATGTCAGATT+CGG | + | chr5_4:11296482-11296501 | None:intergenic | 35.0% | |
| AGATTCATTCACAAACGAAC+CGG | - | chr5_4:11296526-11296545 | Msa0837320:CDS | 35.0% | |
| !! | TTGTTGTTTCGGTTCAAAAC+CGG | + | chr5_4:11296548-11296567 | None:intergenic | 35.0% |
| TTTGAACCGAAACAACAAAC+CGG | - | chr5_4:11296550-11296569 | Msa0837320:CDS | 35.0% | |
| AAGCTGAAAACAATGGACAA+TGG | - | chr5_4:11296610-11296629 | Msa0837320:CDS | 35.0% | |
| TGAAAACAATGGACAATGGT+AGG | - | chr5_4:11296614-11296633 | Msa0837320:CDS | 35.0% | |
| ACAATGGTAGGAATCGTATT+CGG | - | chr5_4:11296626-11296645 | Msa0837320:CDS | 35.0% | |
| TGTGAAGAAATTGTTGAAGG+TGG | - | chr5_4:11296723-11296742 | Msa0837320:CDS | 35.0% | |
| AAAGAGTTGTGTAACGGTTT+CGG | - | chr5_4:11296786-11296805 | Msa0837320:intron | 35.0% | |
| !! | TAATTTGTGGGTTGATACAG+AGG | - | chr5_4:11297041-11297060 | Msa0837320:intron | 35.0% |
| !! | AATTTGTGGGTTGATACAGA+GGG | - | chr5_4:11297042-11297061 | Msa0837320:intron | 35.0% |
| !!! | TTCTCGTTTTTTTCTTCCAC+AGG | - | chr5_4:11297180-11297199 | Msa0837320:intron | 35.0% |
| ATAGTGATGAATGAAAGCTC+TGG | + | chr5_4:11297259-11297278 | None:intergenic | 35.0% | |
| AATCCTCCTTGATTGAATCT+AGG | + | chr5_4:11297400-11297419 | None:intergenic | 35.0% | |
| AATCAAGGAGGATTCACAAT+TGG | - | chr5_4:11297406-11297425 | Msa0837320:intron | 35.0% | |
| ATCAAGGAGGATTCACAATT+GGG | - | chr5_4:11297407-11297426 | Msa0837320:intron | 35.0% | |
| ATGCCATTACCTTTAACCTA+AGG | + | chr5_4:11297490-11297509 | None:intergenic | 35.0% | |
| TTAAGTTAGACATGCGTCTT+TGG | - | chr5_4:11297519-11297538 | Msa0837320:intron | 35.0% | |
| ! | ACATACACTTGATGGTTCAT+AGG | - | chr5_4:11297634-11297653 | Msa0837320:intron | 35.0% |
| GAATCTGATACCTTTATTCC+CGG | + | chr5_4:11297850-11297869 | None:intergenic | 35.0% | |
| ATAACCAGTCATGAAGTACA+TGG | + | chr5_4:11298061-11298080 | None:intergenic | 35.0% | |
| TATACATTCTTCCTCAAGAC+CGG | - | chr5_4:11298078-11298097 | Msa0837320:CDS | 35.0% | |
| TCTAAAAGAAGGTTCTTTCC+CGG | + | chr5_4:11298100-11298119 | None:intergenic | 35.0% | |
| TCAAACATAGGAGGAACATT+GGG | + | chr5_4:11298222-11298241 | None:intergenic | 35.0% | |
| ATCAAACATAGGAGGAACAT+TGG | + | chr5_4:11298223-11298242 | None:intergenic | 35.0% | |
| TTAAGAGAACGCTTGCACAA+CGG | - | chr5_4:11296377-11296396 | Msa0837320:CDS | 40.0% | |
| TTGAACCGAAACAACAAACC+GGG | - | chr5_4:11296551-11296570 | Msa0837320:CDS | 40.0% | |
| !! | TTGAACCCGGTTTGTTGTTT+CGG | + | chr5_4:11296559-11296578 | None:intergenic | 40.0% |
| ! | ATGAAGCTCTGATTTGAACC+CGG | + | chr5_4:11296572-11296591 | None:intergenic | 40.0% |
| ! | TTGTTTTCAGCTTCTCCATC+AGG | + | chr5_4:11296603-11296622 | None:intergenic | 40.0% |
| GATGGAGAAGCTGAAAACAA+TGG | - | chr5_4:11296603-11296622 | Msa0837320:CDS | 40.0% | |
| TGGATTGATCATCAAAACGC+CGG | - | chr5_4:11296654-11296673 | Msa0837320:CDS | 40.0% | |
| TTGTTCCGATCATGATCAAG+CGG | - | chr5_4:11296834-11296853 | Msa0837320:intron | 40.0% | |
| CTTAACCGCTTGATCATGAT+CGG | + | chr5_4:11296842-11296861 | None:intergenic | 40.0% | |
| ! | GAAGATGCTTGATGATTCTG+CGG | - | chr5_4:11296867-11296886 | Msa0837320:intron | 40.0% |
| TGTGTTTCTTAGACCTGAAC+AGG | - | chr5_4:11296912-11296931 | Msa0837320:intron | 40.0% | |
| !! | ATTTGTGGGTTGATACAGAG+GGG | - | chr5_4:11297043-11297062 | Msa0837320:intron | 40.0% |
| ! | TGATGAATGAAAGCTCTGGT+GGG | + | chr5_4:11297255-11297274 | None:intergenic | 40.0% |
| AAGCTTAACCAAGAGAGGAT+TGG | + | chr5_4:11297443-11297462 | None:intergenic | 40.0% | |
| GTGCCTTAGGTTAAAGGTAA+TGG | - | chr5_4:11297484-11297503 | Msa0837320:intron | 40.0% | |
| !!! | AAGCAGACTTTGGAGTGTTT+TGG | + | chr5_4:11297821-11297840 | None:intergenic | 40.0% |
| ACATCCATGTACTTCATGAC+TGG | - | chr5_4:11298054-11298073 | Msa0837320:CDS | 40.0% | |
| ATACATTCTTCCTCAAGACC+GGG | - | chr5_4:11298079-11298098 | Msa0837320:CDS | 40.0% | |
| ! | GGGAAAGAACCTTCTTTTAG+AGG | - | chr5_4:11298099-11298118 | Msa0837320:CDS | 40.0% |
| ! | ATTTTCAGATGTGAGAGCAG+TGG | + | chr5_4:11298250-11298269 | None:intergenic | 40.0% |
| TTAAGAGAACGCTTGCACAA+CGG | - | chr5_4:11296377-11296396 | Msa0837320:CDS | 40.0% | |
| TTGAACCGAAACAACAAACC+GGG | - | chr5_4:11296551-11296570 | Msa0837320:CDS | 40.0% | |
| !! | TTGAACCCGGTTTGTTGTTT+CGG | + | chr5_4:11296559-11296578 | None:intergenic | 40.0% |
| ! | ATGAAGCTCTGATTTGAACC+CGG | + | chr5_4:11296572-11296591 | None:intergenic | 40.0% |
| ! | TTGTTTTCAGCTTCTCCATC+AGG | + | chr5_4:11296603-11296622 | None:intergenic | 40.0% |
| GATGGAGAAGCTGAAAACAA+TGG | - | chr5_4:11296603-11296622 | Msa0837320:CDS | 40.0% | |
| TGGATTGATCATCAAAACGC+CGG | - | chr5_4:11296654-11296673 | Msa0837320:CDS | 40.0% | |
| TTGTTCCGATCATGATCAAG+CGG | - | chr5_4:11296834-11296853 | Msa0837320:intron | 40.0% | |
| CTTAACCGCTTGATCATGAT+CGG | + | chr5_4:11296842-11296861 | None:intergenic | 40.0% | |
| ! | GAAGATGCTTGATGATTCTG+CGG | - | chr5_4:11296867-11296886 | Msa0837320:intron | 40.0% |
| TGTGTTTCTTAGACCTGAAC+AGG | - | chr5_4:11296912-11296931 | Msa0837320:intron | 40.0% | |
| !! | ATTTGTGGGTTGATACAGAG+GGG | - | chr5_4:11297043-11297062 | Msa0837320:intron | 40.0% |
| ! | TGATGAATGAAAGCTCTGGT+GGG | + | chr5_4:11297255-11297274 | None:intergenic | 40.0% |
| AAGCTTAACCAAGAGAGGAT+TGG | + | chr5_4:11297443-11297462 | None:intergenic | 40.0% | |
| GTGCCTTAGGTTAAAGGTAA+TGG | - | chr5_4:11297484-11297503 | Msa0837320:intron | 40.0% | |
| !!! | AAGCAGACTTTGGAGTGTTT+TGG | + | chr5_4:11297821-11297840 | None:intergenic | 40.0% |
| ACATCCATGTACTTCATGAC+TGG | - | chr5_4:11298054-11298073 | Msa0837320:CDS | 40.0% | |
| ATACATTCTTCCTCAAGACC+GGG | - | chr5_4:11298079-11298098 | Msa0837320:CDS | 40.0% | |
| ! | GGGAAAGAACCTTCTTTTAG+AGG | - | chr5_4:11298099-11298118 | Msa0837320:CDS | 40.0% |
| ! | ATTTTCAGATGTGAGAGCAG+TGG | + | chr5_4:11298250-11298269 | None:intergenic | 40.0% |
| !!! | GGATTTTGAAACACTGACGG+AGG | + | chr5_4:11296461-11296480 | None:intergenic | 45.0% |
| TCTGACATTTCTCCTGAACC+AGG | - | chr5_4:11296484-11296503 | Msa0837320:CDS | 45.0% | |
| GCTTCATCAACCAAACCTGA+TGG | - | chr5_4:11296585-11296604 | Msa0837320:CDS | 45.0% | |
| TTCAGCTTCTCCATCAGGTT+TGG | + | chr5_4:11296598-11296617 | None:intergenic | 45.0% | |
| TGGTAGGAATCGTATTCGGT+TGG | - | chr5_4:11296630-11296649 | Msa0837320:CDS | 45.0% | |
| AGGAATCGTATTCGGTTGGA+TGG | - | chr5_4:11296634-11296653 | Msa0837320:CDS | 45.0% | |
| ATTGATCATCAAAACGCCGG+CGG | - | chr5_4:11296657-11296676 | Msa0837320:CDS | 45.0% | |
| TCTGCGGCTGTGATTATTCT+TGG | - | chr5_4:11296883-11296902 | Msa0837320:intron | 45.0% | |
| !! | TTTGTGGGTTGATACAGAGG+GGG | - | chr5_4:11297044-11297063 | Msa0837320:intron | 45.0% |
| ! | GTGATGAATGAAAGCTCTGG+TGG | + | chr5_4:11297256-11297275 | None:intergenic | 45.0% |
| GAGGGTCCTAGATTCAATCA+AGG | - | chr5_4:11297391-11297410 | Msa0837320:intron | 45.0% | |
| GGTCCTAGATTCAATCAAGG+AGG | - | chr5_4:11297394-11297413 | Msa0837320:intron | 45.0% | |
| TATACATTGTCGCGTGCCTT+AGG | - | chr5_4:11297471-11297490 | Msa0837320:intron | 45.0% | |
| GATACCTTTATTCCCGGTGT+AGG | + | chr5_4:11297844-11297863 | None:intergenic | 45.0% | |
| CTTGGTTGATCGTGAGCTTT+GGG | - | chr5_4:11297933-11297952 | Msa0837320:CDS | 45.0% | |
| TTGGTTGATCGTGAGCTTTG+GGG | - | chr5_4:11297934-11297953 | Msa0837320:CDS | 45.0% | |
| ! | GGGAGGTTTGGGTTTCATTA+TGG | - | chr5_4:11297954-11297973 | Msa0837320:CDS | 45.0% |
| !! | TCACCTTTTGGGAGCTTACT+TGG | - | chr5_4:11298001-11298020 | Msa0837320:CDS | 45.0% |
| !! | CACCTTTTGGGAGCTTACTT+GGG | - | chr5_4:11298002-11298021 | Msa0837320:CDS | 45.0% |
| ATCCCAAGTAAGCTCCCAAA+AGG | + | chr5_4:11298007-11298026 | None:intergenic | 45.0% | |
| GGAGCTTACTTGGGATGTAA+TGG | - | chr5_4:11298011-11298030 | Msa0837320:CDS | 45.0% | |
| GTGGAGGAATCAAACATAGG+AGG | + | chr5_4:11298231-11298250 | None:intergenic | 45.0% | |
| GCAGTGGAGGAATCAAACAT+AGG | + | chr5_4:11298234-11298253 | None:intergenic | 45.0% | |
| !!! | GGATTTTGAAACACTGACGG+AGG | + | chr5_4:11296461-11296480 | None:intergenic | 45.0% |
| TCTGACATTTCTCCTGAACC+AGG | - | chr5_4:11296484-11296503 | Msa0837320:CDS | 45.0% | |
| GCTTCATCAACCAAACCTGA+TGG | - | chr5_4:11296585-11296604 | Msa0837320:CDS | 45.0% | |
| TTCAGCTTCTCCATCAGGTT+TGG | + | chr5_4:11296598-11296617 | None:intergenic | 45.0% | |
| TGGTAGGAATCGTATTCGGT+TGG | - | chr5_4:11296630-11296649 | Msa0837320:CDS | 45.0% | |
| AGGAATCGTATTCGGTTGGA+TGG | - | chr5_4:11296634-11296653 | Msa0837320:CDS | 45.0% | |
| ATTGATCATCAAAACGCCGG+CGG | - | chr5_4:11296657-11296676 | Msa0837320:CDS | 45.0% | |
| TCTGCGGCTGTGATTATTCT+TGG | - | chr5_4:11296883-11296902 | Msa0837320:intron | 45.0% | |
| !! | TTTGTGGGTTGATACAGAGG+GGG | - | chr5_4:11297044-11297063 | Msa0837320:intron | 45.0% |
| ! | GTGATGAATGAAAGCTCTGG+TGG | + | chr5_4:11297256-11297275 | None:intergenic | 45.0% |
| GAGGGTCCTAGATTCAATCA+AGG | - | chr5_4:11297391-11297410 | Msa0837320:intron | 45.0% | |
| GGTCCTAGATTCAATCAAGG+AGG | - | chr5_4:11297394-11297413 | Msa0837320:intron | 45.0% | |
| TATACATTGTCGCGTGCCTT+AGG | - | chr5_4:11297471-11297490 | Msa0837320:intron | 45.0% | |
| GATACCTTTATTCCCGGTGT+AGG | + | chr5_4:11297844-11297863 | None:intergenic | 45.0% | |
| CTTGGTTGATCGTGAGCTTT+GGG | - | chr5_4:11297933-11297952 | Msa0837320:CDS | 45.0% | |
| TTGGTTGATCGTGAGCTTTG+GGG | - | chr5_4:11297934-11297953 | Msa0837320:CDS | 45.0% | |
| ! | GGGAGGTTTGGGTTTCATTA+TGG | - | chr5_4:11297954-11297973 | Msa0837320:CDS | 45.0% |
| !! | TCACCTTTTGGGAGCTTACT+TGG | - | chr5_4:11298001-11298020 | Msa0837320:CDS | 45.0% |
| !! | CACCTTTTGGGAGCTTACTT+GGG | - | chr5_4:11298002-11298021 | Msa0837320:CDS | 45.0% |
| ATCCCAAGTAAGCTCCCAAA+AGG | + | chr5_4:11298007-11298026 | None:intergenic | 45.0% | |
| GGAGCTTACTTGGGATGTAA+TGG | - | chr5_4:11298011-11298030 | Msa0837320:CDS | 45.0% | |
| GTGGAGGAATCAAACATAGG+AGG | + | chr5_4:11298231-11298250 | None:intergenic | 45.0% | |
| GCAGTGGAGGAATCAAACAT+AGG | + | chr5_4:11298234-11298253 | None:intergenic | 45.0% | |
| TCTCCTGAACCAGGCGATAA+TGG | - | chr5_4:11296493-11296512 | Msa0837320:CDS | 50.0% | |
| TTGAATGCGCCATTATCGCC+TGG | + | chr5_4:11296505-11296524 | None:intergenic | 50.0% | |
| GAAGGTGGCGCAATTAGAGA+TGG | - | chr5_4:11296738-11296757 | Msa0837320:CDS | 50.0% | |
| TGTCGCGTGCCTTAGGTTAA+AGG | - | chr5_4:11297478-11297497 | Msa0837320:intron | 50.0% | |
| CCAAAGTCTGCTTCCTACAC+CGG | - | chr5_4:11297828-11297847 | Msa0837320:CDS | 50.0% | |
| CAAAGTCTGCTTCCTACACC+GGG | - | chr5_4:11297829-11297848 | Msa0837320:CDS | 50.0% | |
| GCTTCCTACACCGGGAATAA+AGG | - | chr5_4:11297837-11297856 | Msa0837320:CDS | 50.0% | |
| CTCACGATCAACCAAGGCTT+CGG | + | chr5_4:11297929-11297948 | None:intergenic | 50.0% | |
| CCAAAGCTCACGATCAACCA+AGG | + | chr5_4:11297935-11297954 | None:intergenic | 50.0% | |
| CCTTGGTTGATCGTGAGCTT+TGG | - | chr5_4:11297932-11297951 | Msa0837320:CDS | 50.0% | |
| AAGGTTCTTTCCCGGTCTTG+AGG | + | chr5_4:11298092-11298111 | None:intergenic | 50.0% | |
| TTCAGATGTGAGAGCAGTGG+AGG | + | chr5_4:11298247-11298266 | None:intergenic | 50.0% | |
| TCTCCTGAACCAGGCGATAA+TGG | - | chr5_4:11296493-11296512 | Msa0837320:CDS | 50.0% | |
| TTGAATGCGCCATTATCGCC+TGG | + | chr5_4:11296505-11296524 | None:intergenic | 50.0% | |
| GAAGGTGGCGCAATTAGAGA+TGG | - | chr5_4:11296738-11296757 | Msa0837320:CDS | 50.0% | |
| TGTCGCGTGCCTTAGGTTAA+AGG | - | chr5_4:11297478-11297497 | Msa0837320:intron | 50.0% | |
| CCAAAGTCTGCTTCCTACAC+CGG | - | chr5_4:11297828-11297847 | Msa0837320:CDS | 50.0% | |
| CAAAGTCTGCTTCCTACACC+GGG | - | chr5_4:11297829-11297848 | Msa0837320:CDS | 50.0% | |
| GCTTCCTACACCGGGAATAA+AGG | - | chr5_4:11297837-11297856 | Msa0837320:CDS | 50.0% | |
| CTCACGATCAACCAAGGCTT+CGG | + | chr5_4:11297929-11297948 | None:intergenic | 50.0% | |
| CCAAAGCTCACGATCAACCA+AGG | + | chr5_4:11297935-11297954 | None:intergenic | 50.0% | |
| CCTTGGTTGATCGTGAGCTT+TGG | - | chr5_4:11297932-11297951 | Msa0837320:CDS | 50.0% | |
| AAGGTTCTTTCCCGGTCTTG+AGG | + | chr5_4:11298092-11298111 | None:intergenic | 50.0% | |
| TTCAGATGTGAGAGCAGTGG+AGG | + | chr5_4:11298247-11298266 | None:intergenic | 50.0% | |
| ACGCTAACACCGTCCTCCTT+CGG | + | chr5_4:11296697-11296716 | None:intergenic | 55.0% | |
| ! | AAGGAGGACGGTGTTAGCGT+CGG | - | chr5_4:11296697-11296716 | Msa0837320:CDS | 55.0% |
| CCGGTGTAGGAAGCAGACTT+TGG | + | chr5_4:11297831-11297850 | None:intergenic | 55.0% | |
| GGCTTCGGCTTCTTCATCGA+TGG | + | chr5_4:11297914-11297933 | None:intergenic | 55.0% | |
| CGATGAAGAAGCCGAAGCCT+TGG | - | chr5_4:11297915-11297934 | Msa0837320:CDS | 55.0% | |
| !! | GTTGATCGTGAGCTTTGGGG+AGG | - | chr5_4:11297937-11297956 | Msa0837320:CDS | 55.0% |
| !! | TCGTGAGCTTTGGGGAGGTT+TGG | - | chr5_4:11297942-11297961 | Msa0837320:CDS | 55.0% |
| !! | CGTGAGCTTTGGGGAGGTTT+GGG | - | chr5_4:11297943-11297962 | Msa0837320:CDS | 55.0% |
| ACGCTAACACCGTCCTCCTT+CGG | + | chr5_4:11296697-11296716 | None:intergenic | 55.0% | |
| ! | AAGGAGGACGGTGTTAGCGT+CGG | - | chr5_4:11296697-11296716 | Msa0837320:CDS | 55.0% |
| CCGGTGTAGGAAGCAGACTT+TGG | + | chr5_4:11297831-11297850 | None:intergenic | 55.0% | |
| GGCTTCGGCTTCTTCATCGA+TGG | + | chr5_4:11297914-11297933 | None:intergenic | 55.0% | |
| CGATGAAGAAGCCGAAGCCT+TGG | - | chr5_4:11297915-11297934 | Msa0837320:CDS | 55.0% | |
| !! | GTTGATCGTGAGCTTTGGGG+AGG | - | chr5_4:11297937-11297956 | Msa0837320:CDS | 55.0% |
| !! | TCGTGAGCTTTGGGGAGGTT+TGG | - | chr5_4:11297942-11297961 | Msa0837320:CDS | 55.0% |
| !! | CGTGAGCTTTGGGGAGGTTT+GGG | - | chr5_4:11297943-11297962 | Msa0837320:CDS | 55.0% |
| GCGCCATTATCGCCTGGTTC+AGG | + | chr5_4:11296499-11296518 | None:intergenic | 60.0% | |
| CAAAACGCCGGCGGAGAAAC+CGG | - | chr5_4:11296666-11296685 | Msa0837320:CDS | 60.0% | |
| GCGCCATTATCGCCTGGTTC+AGG | + | chr5_4:11296499-11296518 | None:intergenic | 60.0% | |
| CAAAACGCCGGCGGAGAAAC+CGG | - | chr5_4:11296666-11296685 | Msa0837320:CDS | 60.0% | |
| GGAGAAACCGGCGATGCCGA+AGG | - | chr5_4:11296678-11296697 | Msa0837320:CDS | 65.0% | |
| GAAACCGGCGATGCCGAAGG+AGG | - | chr5_4:11296681-11296700 | Msa0837320:CDS | 65.0% | |
| GGAGAAACCGGCGATGCCGA+AGG | - | chr5_4:11296678-11296697 | Msa0837320:CDS | 65.0% | |
| GAAACCGGCGATGCCGAAGG+AGG | - | chr5_4:11296681-11296700 | Msa0837320:CDS | 65.0% | |
| !! | GGCATCGCCGGTTTCTCCGC+CGG | + | chr5_4:11296676-11296695 | None:intergenic | 70.0% |
| CCGTCCTCCTTCGGCATCGC+CGG | + | chr5_4:11296688-11296707 | None:intergenic | 70.0% | |
| CCGGCGATGCCGAAGGAGGA+CGG | - | chr5_4:11296685-11296704 | Msa0837320:CDS | 70.0% | |
| !! | GGCATCGCCGGTTTCTCCGC+CGG | + | chr5_4:11296676-11296695 | None:intergenic | 70.0% |
| CCGTCCTCCTTCGGCATCGC+CGG | + | chr5_4:11296688-11296707 | None:intergenic | 70.0% | |
| CCGGCGATGCCGAAGGAGGA+CGG | - | chr5_4:11296685-11296704 | Msa0837320:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 11296311 | 11298284 | 11296311 | ID=Msa0837320;Name=Msa0837320 |
| chr5_4 | mRNA | 11296311 | 11298284 | 11296311 | ID=Msa0837320-mRNA-1;Parent=Msa0837320;Name=Msa0837320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=44|0|0.5|1|1|1|2|0|349 |
| chr5_4 | exon | 11296311 | 11296781 | 11296311 | ID=Msa0837320-mRNA-1:exon:4940;Parent=Msa0837320-mRNA-1 |
| chr5_4 | exon | 11297662 | 11298284 | 11297662 | ID=Msa0837320-mRNA-1:exon:4939;Parent=Msa0837320-mRNA-1 |
| chr5_4 | five_prime_UTR | 11298241 | 11298284 | 11298241 | ID=Msa0837320-mRNA-1:five_prime_utr;Parent=Msa0837320-mRNA-1 |
| chr5_4 | CDS | 11297662 | 11298240 | 11297662 | ID=Msa0837320-mRNA-1:cds;Parent=Msa0837320-mRNA-1 |
| chr5_4 | CDS | 11296311 | 11296781 | 11296311 | ID=Msa0837320-mRNA-1:cds;Parent=Msa0837320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
