Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612590 | XP_013457030.1 | 93.827 | 324 | 18 | 1 | 1 | 322 | 1 | 324 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0612590 | 0.814121 | 1.809977e-51 | -8.615850e-47 |
| Msa0076640 | Msa0612590 | 0.810687 | 1.018188e-50 | -8.615850e-47 |
| Msa0092220 | Msa0612590 | 0.823572 | 1.288424e-53 | -8.615850e-47 |
| Msa0612580 | Msa0612590 | 0.819580 | 1.078012e-52 | -8.615850e-47 |
| Msa0612590 | Msa0616580 | 0.802144 | 6.449973e-49 | -8.615850e-47 |
| Msa0612590 | Msa0653230 | 0.845283 | 4.472391e-59 | -8.615850e-47 |
| Msa0612590 | Msa0695650 | 0.937411 | 3.617231e-98 | -8.615850e-47 |
| Msa0612590 | Msa0716150 | 0.844679 | 6.512301e-59 | -8.615850e-47 |
| Msa0612590 | Msa0798790 | 0.860621 | 1.817689e-63 | -8.615850e-47 |
| Msa0612590 | Msa0837320 | 0.862351 | 5.389379e-64 | -8.615850e-47 |
| Msa0612590 | Msa1030260 | 0.853477 | 2.328599e-61 | -8.615850e-47 |
| Msa0612590 | Msa1120560 | 0.849081 | 4.065933e-60 | -8.615850e-47 |
| Msa0612590 | Msa1157130 | 0.846107 | 2.673656e-59 | -8.615850e-47 |
| Msa0612590 | Msa1407350 | 0.830840 | 2.341474e-55 | -8.615850e-47 |
| Msa0177320 | Msa0612590 | 0.804919 | 1.713982e-49 | -8.615850e-47 |
| Msa0192470 | Msa0612590 | 0.817874 | 2.630022e-52 | -8.615850e-47 |
| Msa0204150 | Msa0612590 | 0.805920 | 1.057329e-49 | -8.615850e-47 |
| Msa0272840 | Msa0612590 | 0.825551 | 4.407329e-54 | -8.615850e-47 |
| Msa0324820 | Msa0612590 | 0.802054 | 6.729078e-49 | -8.615850e-47 |
| Msa0557910 | Msa0612590 | 0.871695 | 5.616924e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612590 | MtrunA17_Chr4g0047231 | 93.827 | 324 | 18 | 1 | 1 | 322 | 1 | 324 | 0.0 | 635 |
| Msa0612590 | MtrunA17_Chr4g0047221 | 84.568 | 324 | 46 | 3 | 1 | 322 | 55 | 376 | 0.0 | 574 |
| Msa0612590 | MtrunA17_Chr2g0282301 | 56.615 | 325 | 130 | 6 | 1 | 322 | 1 | 317 | 3.57e-126 | 363 |
| Msa0612590 | MtrunA17_Chr2g0282311 | 48.428 | 318 | 155 | 4 | 6 | 322 | 10 | 319 | 9.23e-108 | 317 |
| Msa0612590 | MtrunA17_Chr4g0040171 | 53.719 | 242 | 101 | 6 | 83 | 322 | 58 | 290 | 6.05e-85 | 257 |
| Msa0612590 | MtrunA17_Chr5g0396281 | 35.500 | 200 | 124 | 3 | 91 | 288 | 44 | 240 | 3.18e-43 | 149 |
| Msa0612590 | MtrunA17_Chr7g0251511 | 34.641 | 153 | 98 | 2 | 145 | 296 | 129 | 280 | 1.32e-32 | 123 |
| Msa0612590 | MtrunA17_Chr4g0075591 | 37.589 | 141 | 81 | 2 | 138 | 278 | 110 | 243 | 2.17e-31 | 119 |
| Msa0612590 | MtrunA17_Chr1g0166241 | 37.008 | 127 | 74 | 2 | 147 | 273 | 153 | 273 | 4.08e-30 | 117 |
| Msa0612590 | MtrunA17_Chr8g0339051 | 36.296 | 135 | 85 | 1 | 145 | 278 | 129 | 263 | 4.46e-30 | 116 |
| Msa0612590 | MtrunA17_Chr4g0075611 | 34.177 | 158 | 96 | 2 | 121 | 278 | 112 | 261 | 4.84e-30 | 115 |
| Msa0612590 | MtrunA17_Chr2g0289701 | 34.641 | 153 | 91 | 3 | 147 | 296 | 134 | 280 | 1.19e-27 | 109 |
| Msa0612590 | MtrunA17_Chr1g0184881 | 28.910 | 211 | 118 | 6 | 114 | 308 | 145 | 339 | 1.21e-27 | 110 |
| Msa0612590 | MtrunA17_Chr7g0260551 | 33.333 | 165 | 95 | 3 | 114 | 278 | 136 | 285 | 4.55e-27 | 108 |
| Msa0612590 | MtrunA17_Chr1g0188091 | 36.220 | 127 | 75 | 1 | 145 | 271 | 173 | 293 | 5.95e-27 | 108 |
| Msa0612590 | MtrunA17_Chr7g0234691 | 37.037 | 135 | 83 | 2 | 145 | 278 | 169 | 302 | 9.05e-27 | 107 |
| Msa0612590 | MtrunA17_Chr8g0384101 | 33.871 | 124 | 81 | 1 | 149 | 271 | 84 | 207 | 7.69e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612590 | AT4G32480.1 | 47.080 | 274 | 124 | 6 | 36 | 308 | 21 | 274 | 5.25e-82 | 250 |
| Msa0612590 | AT2G20670.1 | 47.748 | 222 | 112 | 3 | 89 | 308 | 61 | 280 | 1.63e-73 | 229 |
| Msa0612590 | AT3G07350.1 | 40.909 | 132 | 78 | 0 | 147 | 278 | 135 | 266 | 9.54e-38 | 136 |
| Msa0612590 | AT3G25240.1 | 31.466 | 232 | 147 | 5 | 68 | 291 | 30 | 257 | 1.38e-32 | 122 |
| Msa0612590 | AT4G14620.1 | 39.062 | 128 | 72 | 1 | 151 | 278 | 147 | 268 | 1.39e-32 | 124 |
| Msa0612590 | AT2G38820.2 | 34.783 | 161 | 89 | 5 | 111 | 271 | 133 | 277 | 8.33e-31 | 118 |
| Msa0612590 | AT3G22970.2 | 37.879 | 132 | 75 | 2 | 148 | 278 | 57 | 182 | 3.18e-30 | 115 |
| Msa0612590 | AT2G39650.1 | 28.723 | 188 | 126 | 2 | 90 | 277 | 61 | 240 | 4.27e-30 | 116 |
| Msa0612590 | AT2G39650.2 | 30.220 | 182 | 119 | 2 | 96 | 277 | 5 | 178 | 5.07e-30 | 114 |
| Msa0612590 | AT3G22970.1 | 38.462 | 130 | 73 | 2 | 148 | 276 | 168 | 291 | 5.93e-29 | 114 |
| Msa0612590 | AT3G54550.1 | 30.769 | 143 | 89 | 2 | 148 | 286 | 145 | 281 | 3.94e-25 | 102 |
| Msa0612590 | AT1G62420.1 | 31.655 | 139 | 88 | 2 | 149 | 285 | 110 | 243 | 3.59e-24 | 100 |
| Msa0612590 | AT1G12030.1 | 32.061 | 131 | 82 | 2 | 149 | 278 | 112 | 236 | 6.86e-23 | 96.7 |
| Msa0612590 | AT1G77160.2 | 29.412 | 136 | 84 | 2 | 148 | 271 | 26 | 161 | 5.67e-20 | 87.0 |
| Msa0612590 | AT1G77145.1 | 29.167 | 144 | 90 | 2 | 148 | 279 | 76 | 219 | 8.04e-20 | 87.8 |
| Msa0612590 | AT1G77160.1 | 29.412 | 136 | 84 | 2 | 148 | 271 | 81 | 216 | 1.39e-19 | 87.0 |
| Msa0612590 | AT1G77145.2 | 32.710 | 107 | 68 | 1 | 177 | 279 | 56 | 162 | 3.24e-15 | 73.6 |
Find 55 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAGAGAAAGGAGATATT+AGG | 0.188794 | 4_2:-61038649 | Msa0612590:CDS |
| AGTGGTTAGGTCCATTTAAA+AGG | 0.261572 | 4_2:-61038412 | Msa0612590:CDS |
| TTCAACTAATTCACTTTCAT+TGG | 0.273663 | 4_2:-61038384 | Msa0612590:CDS |
| GTGCAATTTGTAATACTAAA+TGG | 0.278765 | 4_2:-61039234 | Msa0612590:CDS |
| GATGCCTTTGGCTTCTGCTT+TGG | 0.309443 | 4_2:+61038338 | None:intergenic |
| CAACAGAACTTGTTCTATAT+AGG | 0.334794 | 4_2:+61039413 | None:intergenic |
| GATGATTGTGATGTGGGTTT+TGG | 0.352300 | 4_2:-61039707 | Msa0612590:CDS |
| CAAAGAGAAAGGAGATATTA+GGG | 0.363806 | 4_2:-61038648 | Msa0612590:CDS |
| TTATGTGTATGGCAGCTAAA+AGG | 0.369972 | 4_2:-61038496 | Msa0612590:CDS |
| ATAGCAGTACAATGCATATC+AGG | 0.379730 | 4_2:+61038284 | None:intergenic |
| ACAGTTAACATCGATGCCTT+TGG | 0.407087 | 4_2:+61038326 | None:intergenic |
| ACTTGTCTCATAAAACAGTT+TGG | 0.416082 | 4_2:+61039289 | None:intergenic |
| TTTCTTGATGATTGTGATGT+GGG | 0.416102 | 4_2:-61039713 | Msa0612590:CDS |
| TCAACTAATTCACTTTCATT+GGG | 0.420472 | 4_2:-61038383 | Msa0612590:CDS |
| CATAATCAAGATTATGTGTA+TGG | 0.427742 | 4_2:-61038507 | Msa0612590:CDS |
| GTCAAAACATAACATAATCA+TGG | 0.437841 | 4_2:-61039852 | Msa0612590:exon |
| CCTAGTCACTCGTGCTAAAG+AGG | 0.444536 | 4_2:+61039823 | None:intergenic |
| AAAACAGTTTGGACATGATC+TGG | 0.459749 | 4_2:+61039300 | None:intergenic |
| TTACCTGCAAAAGCTGAAGT+TGG | 0.467608 | 4_2:+61039552 | None:intergenic |
| CTTTCGAGCACAATTTGAGA+TGG | 0.476688 | 4_2:-61038609 | Msa0612590:CDS |
| GGCAGCTAAAAGGTGTTTGA+AGG | 0.493144 | 4_2:-61038486 | Msa0612590:CDS |
| TCTAACCAGCTTCAAAATGC+TGG | 0.495680 | 4_2:-61039265 | Msa0612590:CDS |
| CAATATGCAGACACAAATCT+TGG | 0.504940 | 4_2:-61039752 | Msa0612590:CDS |
| GTTTCATCATGATAATCATA+TGG | 0.507505 | 4_2:-61039663 | Msa0612590:CDS |
| AGTTCACATAATCTTCCATC+AGG | 0.512882 | 4_2:-61039208 | Msa0612590:intron |
| TTTCGAGCACAATTTGAGAT+GGG | 0.513578 | 4_2:-61038608 | Msa0612590:CDS |
| GAATTCAAAGCAGGTTCAAA+CGG | 0.514136 | 4_2:+61038116 | None:intergenic |
| GTTCTGTTGAAATAAGCATA+AGG | 0.516383 | 4_2:-61039399 | Msa0612590:CDS |
| TACATGCAAGCTAAGTGGTT+AGG | 0.517313 | 4_2:-61038425 | Msa0612590:CDS |
| GTGACTAGGTATTTGCCAGC+TGG | 0.519709 | 4_2:-61039809 | Msa0612590:CDS |
| TCATGATAATCATATGGAGT+TGG | 0.523947 | 4_2:-61039657 | Msa0612590:CDS |
| TGATCTTGGGAATTCAAAGC+AGG | 0.531761 | 4_2:+61038107 | None:intergenic |
| CCTCTTTAGCACGAGTGACT+AGG | 0.537423 | 4_2:-61039823 | Msa0612590:CDS |
| AATTATTTATAGCAATACAT+AGG | 0.537770 | 4_2:-61038139 | Msa0612590:three_prime_UTR |
| TGAGATGGGAAAAGCAAGTG+AGG | 0.544475 | 4_2:-61038594 | Msa0612590:CDS |
| AAACTCCCTGAGGTTTATGT+AGG | 0.545128 | 4_2:-61038551 | Msa0612590:CDS |
| CATAATACAAGCAAAGAGAA+AGG | 0.545468 | 4_2:-61038659 | Msa0612590:CDS |
| TGCAACGAAAGAAGCAATTG+AGG | 0.553944 | 4_2:-61039374 | Msa0612590:CDS |
| TCAAAACATAACATAATCAT+GGG | 0.557183 | 4_2:-61039851 | Msa0612590:exon |
| ATAAATACATGCAAGCTAAG+TGG | 0.576303 | 4_2:-61038430 | Msa0612590:CDS |
| TCTACTGAGAGGGTTAAAGA+AGG | 0.607479 | 4_2:-61039611 | Msa0612590:CDS |
| ACAAAATGCACATGGGACCA+TGG | 0.611544 | 4_2:-61038460 | Msa0612590:CDS |
| TAATCCAAAGCAGAAGCCAA+AGG | 0.630360 | 4_2:-61038342 | Msa0612590:CDS |
| TAAAGAAGGTTGTAACAATG+AGG | 0.631226 | 4_2:-61039597 | Msa0612590:CDS |
| GTTGGATATTGAAGATGATG+AGG | 0.631925 | 4_2:-61039639 | Msa0612590:CDS |
| CAGGGAGTTTCCTCACAAGA+CGG | 0.633524 | 4_2:+61038564 | None:intergenic |
| GAAGGAAAACAAAATGCACA+TGG | 0.638628 | 4_2:-61038468 | Msa0612590:CDS |
| ATGAGGATAAATCTACTGAG+AGG | 0.643770 | 4_2:-61039622 | Msa0612590:CDS |
| TGAGGATAAATCTACTGAGA+GGG | 0.644963 | 4_2:-61039621 | Msa0612590:CDS |
| AATTCCCTACGAAAACCAGC+TGG | 0.645424 | 4_2:+61039794 | None:intergenic |
| AGGATTATAACCGTCTTGTG+AGG | 0.653130 | 4_2:-61038574 | Msa0612590:CDS |
| TGTAGTTGTAGTAGACAGAG+TGG | 0.660897 | 4_2:-61039328 | Msa0612590:CDS |
| AAAGGCATCGATGTTAACTG+TGG | 0.685100 | 4_2:-61038324 | Msa0612590:CDS |
| AAGGAAAACAAAATGCACAT+GGG | 0.713631 | 4_2:-61038467 | Msa0612590:CDS |
| TCTTGTGAGGAAACTCCCTG+AGG | 0.737856 | 4_2:-61038561 | Msa0612590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTAGTGATTTAAAA+GGG | + | chr4_2:61039011-61039030 | None:intergenic | 10.0% |
| !!! | AAATATTTTAGTGATTTAAA+AGG | + | chr4_2:61039012-61039031 | None:intergenic | 10.0% |
| !!! | TATTTTCTTAATCAATTTTG+AGG | - | chr4_2:61038491-61038510 | Msa0612590:CDS | 15.0% |
| !! | AAATTGAATGAATGTTTAAA+GGG | + | chr4_2:61038825-61038844 | None:intergenic | 15.0% |
| !! | TAAATTGAATGAATGTTTAA+AGG | + | chr4_2:61038826-61038845 | None:intergenic | 15.0% |
| !! | ACAGGATTATTAAAAAATTA+AGG | - | chr4_2:61039124-61039143 | Msa0612590:intron | 15.0% |
| !!! | TATTAAAAAATTAAGGTGTT+AGG | - | chr4_2:61039131-61039150 | Msa0612590:intron | 15.0% |
| !!! | TGATACTATTTTTTGTTTTT+TGG | - | chr4_2:61039732-61039751 | Msa0612590:CDS | 15.0% |
| !! | AATTATTTATAGCAATACAT+AGG | - | chr4_2:61039839-61039858 | Msa0612590:exon | 15.0% |
| !! | TCAAAACATAACATAATCAT+GGG | - | chr4_2:61038127-61038146 | Msa0612590:three_prime_UTR | 20.0% |
| !! | CATATAGACTATGAATAAAT+TGG | + | chr4_2:61038456-61038475 | None:intergenic | 20.0% |
| !! | AATTAAATGAAATTACCTGA+TGG | + | chr4_2:61038788-61038807 | None:intergenic | 20.0% |
| !! | TAATACATTCTTGTCAATAT+AGG | + | chr4_2:61039068-61039087 | None:intergenic | 20.0% |
| !! | TATATTGACAAGAATGTATT+AGG | - | chr4_2:61039067-61039086 | Msa0612590:intron | 20.0% |
| !!! | TTTTTTGTTTTTTGGTAGAT+AGG | - | chr4_2:61039740-61039759 | Msa0612590:CDS | 20.0% |
| !!! | TTTTTTATTTCTAGTGAGAA+AGG | - | chr4_2:61039784-61039803 | Msa0612590:CDS | 20.0% |
| ! | GTCAAAACATAACATAATCA+TGG | - | chr4_2:61038126-61038145 | Msa0612590:three_prime_UTR | 25.0% |
| ! | GTTTCATCATGATAATCATA+TGG | - | chr4_2:61038315-61038334 | Msa0612590:CDS | 25.0% |
| !! | ATGAGGAGAATAGAAATTTT+TGG | - | chr4_2:61038398-61038417 | Msa0612590:CDS | 25.0% |
| !! | TGAGGAGAATAGAAATTTTT+GGG | - | chr4_2:61038399-61038418 | Msa0612590:CDS | 25.0% |
| ! | GTGCAATTTGTAATACTAAA+TGG | - | chr4_2:61038744-61038763 | Msa0612590:intron | 25.0% |
| ! | AAGGTCAAAATAGATCATAT+GGG | + | chr4_2:61038983-61039002 | None:intergenic | 25.0% |
| ! | TAAGGTCAAAATAGATCATA+TGG | + | chr4_2:61038984-61039003 | None:intergenic | 25.0% |
| ! | ACAAGAATGTATTAGGTATT+AGG | - | chr4_2:61039074-61039093 | Msa0612590:intron | 25.0% |
| ! | ATATGTGATCATAACTATAC+AGG | - | chr4_2:61039271-61039290 | Msa0612590:CDS | 25.0% |
| ! | TATGTGATCATAACTATACA+GGG | - | chr4_2:61039272-61039291 | Msa0612590:CDS | 25.0% |
| ! | CATAATCAAGATTATGTGTA+TGG | - | chr4_2:61039471-61039490 | Msa0612590:intron | 25.0% |
| !! | ATGTATTTATGTTTTCTCCA+TGG | + | chr4_2:61039538-61039557 | None:intergenic | 25.0% |
| ! | TTCAACTAATTCACTTTCAT+TGG | - | chr4_2:61039594-61039613 | Msa0612590:CDS | 25.0% |
| ! | TCAACTAATTCACTTTCATT+GGG | - | chr4_2:61039595-61039614 | Msa0612590:CDS | 25.0% |
| !! | TTTTCTTGATGATTGTGATG+TGG | - | chr4_2:61038264-61038283 | Msa0612590:exon | 30.0% |
| ! | TTTCTTGATGATTGTGATGT+GGG | - | chr4_2:61038265-61038284 | Msa0612590:exon | 30.0% |
| TCATGATAATCATATGGAGT+TGG | - | chr4_2:61038321-61038340 | Msa0612590:CDS | 30.0% | |
| TAAAGAAGGTTGTAACAATG+AGG | - | chr4_2:61038381-61038400 | Msa0612590:CDS | 30.0% | |
| ! | TTGTGTTGTGTTGACAAAAT+TGG | - | chr4_2:61038521-61038540 | Msa0612590:CDS | 30.0% |
| ! | CAACAGAACTTGTTCTATAT+AGG | + | chr4_2:61038568-61038587 | None:intergenic | 30.0% |
| GTTCTGTTGAAATAAGCATA+AGG | - | chr4_2:61038579-61038598 | Msa0612590:CDS | 30.0% | |
| ACTTGTCTCATAAAACAGTT+TGG | + | chr4_2:61038692-61038711 | None:intergenic | 30.0% | |
| GTGATTTAAAAGGGACTTTA+AGG | + | chr4_2:61039002-61039021 | None:intergenic | 30.0% | |
| GTTTGTATTTGAAAAGCAAC+AGG | - | chr4_2:61039106-61039125 | Msa0612590:intron | 30.0% | |
| ATGTGATCATAACTATACAG+GGG | - | chr4_2:61039273-61039292 | Msa0612590:CDS | 30.0% | |
| CATAATACAAGCAAAGAGAA+AGG | - | chr4_2:61039319-61039338 | Msa0612590:CDS | 30.0% | |
| CAAAGAGAAAGGAGATATTA+GGG | - | chr4_2:61039330-61039349 | Msa0612590:CDS | 30.0% | |
| AAGGAAAACAAAATGCACAT+GGG | - | chr4_2:61039511-61039530 | Msa0612590:intron | 30.0% | |
| ATAAATACATGCAAGCTAAG+TGG | - | chr4_2:61039548-61039567 | Msa0612590:intron | 30.0% | |
| !! | GTTGAAGTGTTCCTTTTAAA+TGG | + | chr4_2:61039580-61039599 | None:intergenic | 30.0% |
| CAATATGCAGACACAAATCT+TGG | - | chr4_2:61038226-61038245 | Msa0612590:three_prime_UTR | 35.0% | |
| GTTGGATATTGAAGATGATG+AGG | - | chr4_2:61038339-61038358 | Msa0612590:CDS | 35.0% | |
| ATGAGGATAAATCTACTGAG+AGG | - | chr4_2:61038356-61038375 | Msa0612590:CDS | 35.0% | |
| TGAGGATAAATCTACTGAGA+GGG | - | chr4_2:61038357-61038376 | Msa0612590:CDS | 35.0% | |
| AAAACAGTTTGGACATGATC+TGG | + | chr4_2:61038681-61038700 | None:intergenic | 35.0% | |
| !!! | TAAAACCAGCATTTTGAAGC+TGG | + | chr4_2:61038721-61038740 | None:intergenic | 35.0% |
| AGTTCACATAATCTTCCATC+AGG | - | chr4_2:61038770-61038789 | Msa0612590:intron | 35.0% | |
| CTGATTAGTGCAACAGAAAA+AGG | + | chr4_2:61039037-61039056 | None:intergenic | 35.0% | |
| ! | CTTTTTCTGTTGCACTAATC+AGG | - | chr4_2:61039035-61039054 | Msa0612590:intron | 35.0% |
| ! | TACAGGGGAACATACATTTT+TGG | - | chr4_2:61039288-61039307 | Msa0612590:CDS | 35.0% |
| GCAAAGAGAAAGGAGATATT+AGG | - | chr4_2:61039329-61039348 | Msa0612590:CDS | 35.0% | |
| ! | TTTCGAGCACAATTTGAGAT+GGG | - | chr4_2:61039370-61039389 | Msa0612590:CDS | 35.0% |
| ! | CTTTTCCTACATAAACCTCA+GGG | + | chr4_2:61039435-61039454 | None:intergenic | 35.0% |
| TTATGTGTATGGCAGCTAAA+AGG | - | chr4_2:61039482-61039501 | Msa0612590:intron | 35.0% | |
| GAAGGAAAACAAAATGCACA+TGG | - | chr4_2:61039510-61039529 | Msa0612590:intron | 35.0% | |
| AGTGGTTAGGTCCATTTAAA+AGG | - | chr4_2:61039566-61039585 | Msa0612590:CDS | 35.0% | |
| ATAGCAGTACAATGCATATC+AGG | + | chr4_2:61039697-61039716 | None:intergenic | 35.0% | |
| GAATTCAAAGCAGGTTCAAA+CGG | + | chr4_2:61039865-61039884 | None:intergenic | 35.0% | |
| ! | GTTTTCGTAGGGAATTGTCT+AGG | - | chr4_2:61038191-61038210 | Msa0612590:three_prime_UTR | 40.0% |
| ! | GATGATTGTGATGTGGGTTT+TGG | - | chr4_2:61038271-61038290 | Msa0612590:CDS | 40.0% |
| TCTACTGAGAGGGTTAAAGA+AGG | - | chr4_2:61038367-61038386 | Msa0612590:CDS | 40.0% | |
| TTACCTGCAAAAGCTGAAGT+TGG | + | chr4_2:61038429-61038448 | None:intergenic | 40.0% | |
| TGCAACGAAAGAAGCAATTG+AGG | - | chr4_2:61038604-61038623 | Msa0612590:CDS | 40.0% | |
| TGTAGTTGTAGTAGACAGAG+TGG | - | chr4_2:61038650-61038669 | Msa0612590:CDS | 40.0% | |
| TCTAACCAGCTTCAAAATGC+TGG | - | chr4_2:61038713-61038732 | Msa0612590:intron | 40.0% | |
| CTTTCGAGCACAATTTGAGA+TGG | - | chr4_2:61039369-61039388 | Msa0612590:CDS | 40.0% | |
| AGGATTATAACCGTCTTGTG+AGG | - | chr4_2:61039404-61039423 | Msa0612590:CDS | 40.0% | |
| AAACTCCCTGAGGTTTATGT+AGG | - | chr4_2:61039427-61039446 | Msa0612590:intron | 40.0% | |
| ! | GCTTTTCCTACATAAACCTC+AGG | + | chr4_2:61039436-61039455 | None:intergenic | 40.0% |
| TACATGCAAGCTAAGTGGTT+AGG | - | chr4_2:61039553-61039572 | Msa0612590:intron | 40.0% | |
| TAATCCAAAGCAGAAGCCAA+AGG | - | chr4_2:61039636-61039655 | Msa0612590:CDS | 40.0% | |
| ACAGTTAACATCGATGCCTT+TGG | + | chr4_2:61039655-61039674 | None:intergenic | 40.0% | |
| !! | AAAGGCATCGATGTTAACTG+TGG | - | chr4_2:61039654-61039673 | Msa0612590:CDS | 40.0% |
| !!! | ATTTGCCAGCTGGTTTTCGT+AGG | - | chr4_2:61038179-61038198 | Msa0612590:three_prime_UTR | 45.0% |
| !!! | TTTGCCAGCTGGTTTTCGTA+GGG | - | chr4_2:61038180-61038199 | Msa0612590:three_prime_UTR | 45.0% |
| AATTCCCTACGAAAACCAGC+TGG | + | chr4_2:61038187-61038206 | None:intergenic | 45.0% | |
| ! | CAACCAACTTCAGCTTTTGC+AGG | - | chr4_2:61038423-61038442 | Msa0612590:CDS | 45.0% |
| TGAGATGGGAAAAGCAAGTG+AGG | - | chr4_2:61039384-61039403 | Msa0612590:CDS | 45.0% | |
| !! | GGCAGCTAAAAGGTGTTTGA+AGG | - | chr4_2:61039492-61039511 | Msa0612590:intron | 45.0% |
| ACAAAATGCACATGGGACCA+TGG | - | chr4_2:61039518-61039537 | Msa0612590:intron | 45.0% | |
| CCTAGTCACTCGTGCTAAAG+AGG | + | chr4_2:61038158-61038177 | None:intergenic | 50.0% | |
| CCTCTTTAGCACGAGTGACT+AGG | - | chr4_2:61038155-61038174 | Msa0612590:three_prime_UTR | 50.0% | |
| GTGACTAGGTATTTGCCAGC+TGG | - | chr4_2:61038169-61038188 | Msa0612590:three_prime_UTR | 50.0% | |
| CAGGGAGTTTCCTCACAAGA+CGG | + | chr4_2:61039417-61039436 | None:intergenic | 50.0% | |
| TCTTGTGAGGAAACTCCCTG+AGG | - | chr4_2:61039417-61039436 | Msa0612590:CDS | 50.0% | |
| ! | GATGCCTTTGGCTTCTGCTT+TGG | + | chr4_2:61039643-61039662 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 61038111 | 61039889 | 61038111 | ID=Msa0612590;Name=Msa0612590 |
| chr4_2 | mRNA | 61038111 | 61039889 | 61038111 | ID=Msa0612590-mRNA-1;Parent=Msa0612590;Name=Msa0612590-mRNA-1;_AED=0.29;_eAED=0.29;_QI=34|1|1|1|1|1|3|160|322 |
| chr4_2 | exon | 61038111 | 61038707 | 61038111 | ID=Msa0612590-mRNA-1:exon:16554;Parent=Msa0612590-mRNA-1 |
| chr4_2 | exon | 61039209 | 61039440 | 61039209 | ID=Msa0612590-mRNA-1:exon:16553;Parent=Msa0612590-mRNA-1 |
| chr4_2 | exon | 61039556 | 61039889 | 61039556 | ID=Msa0612590-mRNA-1:exon:16552;Parent=Msa0612590-mRNA-1 |
| chr4_2 | five_prime_UTR | 61039856 | 61039889 | 61039856 | ID=Msa0612590-mRNA-1:five_prime_utr;Parent=Msa0612590-mRNA-1 |
| chr4_2 | CDS | 61039556 | 61039855 | 61039556 | ID=Msa0612590-mRNA-1:cds;Parent=Msa0612590-mRNA-1 |
| chr4_2 | CDS | 61039209 | 61039440 | 61039209 | ID=Msa0612590-mRNA-1:cds;Parent=Msa0612590-mRNA-1 |
| chr4_2 | CDS | 61038271 | 61038707 | 61038271 | ID=Msa0612590-mRNA-1:cds;Parent=Msa0612590-mRNA-1 |
| chr4_2 | three_prime_UTR | 61038111 | 61038270 | 61038111 | ID=Msa0612590-mRNA-1:three_prime_utr;Parent=Msa0612590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
