Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209220 | QKE45416.1 | 98.920 | 463 | 5 | 0 | 1 | 463 | 253 | 715 | 0.0 | 953 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209220 | sp|Q570S7|CSLG1_ARATH | 34.409 | 465 | 283 | 7 | 1 | 463 | 262 | 706 | 4.76e-94 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209220 | A0A7D3QB06 | 98.920 | 463 | 5 | 0 | 1 | 463 | 253 | 715 | 0.0 | 953 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208410 | Msa0209220 | 0.826307 | 2.914201e-54 | -8.615850e-47 |
| Msa0208430 | Msa0209220 | 0.824421 | 8.144796e-54 | -8.615850e-47 |
| Msa0209200 | Msa0209220 | 0.863935 | 1.745124e-64 | -8.615850e-47 |
| Msa0209220 | Msa1442090 | 0.805762 | 1.141592e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209220 | MtrunA17_Chr2g0307191 | 97.408 | 463 | 12 | 0 | 1 | 463 | 230 | 692 | 0.0 | 941 |
| Msa0209220 | MtrunA17_Chr3g0095791 | 83.369 | 463 | 77 | 0 | 1 | 463 | 229 | 691 | 0.0 | 822 |
| Msa0209220 | MtrunA17_Chr2g0298581 | 81.641 | 463 | 85 | 0 | 1 | 463 | 230 | 692 | 0.0 | 812 |
| Msa0209220 | MtrunA17_Chr3g0077511 | 70.563 | 462 | 134 | 1 | 4 | 463 | 233 | 694 | 0.0 | 705 |
| Msa0209220 | MtrunA17_Chr4g0046401 | 44.372 | 462 | 253 | 2 | 1 | 461 | 254 | 712 | 5.11e-132 | 398 |
| Msa0209220 | MtrunA17_Chr1g0186381 | 41.505 | 465 | 261 | 4 | 1 | 461 | 254 | 711 | 2.57e-127 | 386 |
| Msa0209220 | MtrunA17_Chr3g0102531 | 33.120 | 468 | 288 | 5 | 1 | 461 | 257 | 706 | 6.77e-87 | 281 |
| Msa0209220 | MtrunA17_Chr3g0102541 | 32.627 | 472 | 291 | 8 | 1 | 463 | 258 | 711 | 1.34e-85 | 277 |
| Msa0209220 | MtrunA17_Chr3g0102551 | 32.196 | 469 | 291 | 6 | 1 | 463 | 268 | 715 | 1.75e-82 | 270 |
| Msa0209220 | MtrunA17_Chr8g0379241 | 29.264 | 516 | 305 | 7 | 1 | 462 | 439 | 948 | 1.06e-68 | 236 |
| Msa0209220 | MtrunA17_Chr8g0364641 | 31.151 | 504 | 295 | 11 | 1 | 462 | 447 | 940 | 1.28e-67 | 233 |
| Msa0209220 | MtrunA17_Chr4g0073711 | 28.571 | 511 | 309 | 7 | 1 | 462 | 494 | 997 | 1.19e-66 | 231 |
| Msa0209220 | MtrunA17_Chr2g0284211 | 28.269 | 520 | 308 | 7 | 1 | 462 | 424 | 936 | 4.56e-66 | 228 |
| Msa0209220 | MtrunA17_Chr2g0307231 | 94.118 | 102 | 6 | 0 | 79 | 180 | 1 | 102 | 1.62e-63 | 200 |
| Msa0209220 | MtrunA17_Chr2g0322361 | 30.064 | 469 | 314 | 8 | 1 | 457 | 253 | 719 | 2.00e-61 | 213 |
| Msa0209220 | MtrunA17_Chr1g0183381 | 27.668 | 506 | 314 | 10 | 1 | 462 | 366 | 863 | 2.44e-61 | 214 |
| Msa0209220 | MtrunA17_Chr4g0025201 | 28.753 | 473 | 320 | 11 | 1 | 460 | 247 | 715 | 1.13e-59 | 208 |
| Msa0209220 | MtrunA17_Chr2g0322371 | 29.498 | 478 | 305 | 11 | 1 | 457 | 243 | 709 | 2.42e-59 | 207 |
| Msa0209220 | MtrunA17_Chr2g0322351 | 30.213 | 470 | 300 | 13 | 1 | 455 | 248 | 704 | 5.06e-58 | 203 |
| Msa0209220 | MtrunA17_Chr5g0410641 | 25.670 | 522 | 323 | 12 | 1 | 462 | 567 | 1083 | 3.49e-53 | 192 |
| Msa0209220 | MtrunA17_Chr2g0297351 | 27.853 | 517 | 311 | 15 | 1 | 461 | 475 | 985 | 3.72e-53 | 192 |
| Msa0209220 | MtrunA17_Chr4g0039801 | 27.151 | 523 | 314 | 11 | 1 | 462 | 588 | 1104 | 1.81e-50 | 184 |
| Msa0209220 | MtrunA17_Chr1g0165411 | 27.344 | 512 | 318 | 10 | 1 | 462 | 558 | 1065 | 5.98e-50 | 183 |
| Msa0209220 | MtrunA17_Chr7g0269741 | 27.022 | 544 | 291 | 14 | 1 | 461 | 611 | 1131 | 1.50e-47 | 176 |
| Msa0209220 | MtrunA17_Chr2g0307221 | 92.000 | 75 | 6 | 0 | 235 | 309 | 1 | 75 | 5.98e-43 | 146 |
| Msa0209220 | MtrunA17_Chr8g0352231 | 27.095 | 358 | 238 | 8 | 111 | 462 | 697 | 1037 | 5.96e-36 | 141 |
| Msa0209220 | MtrunA17_Chr8g0352231 | 41.667 | 132 | 77 | 0 | 1 | 132 | 514 | 645 | 1.65e-30 | 125 |
| Msa0209220 | MtrunA17_Chr8g0383701 | 29.721 | 323 | 216 | 6 | 143 | 461 | 739 | 1054 | 3.11e-35 | 139 |
| Msa0209220 | MtrunA17_Chr8g0383701 | 42.857 | 133 | 75 | 1 | 1 | 132 | 532 | 664 | 2.21e-30 | 125 |
| Msa0209220 | MtrunA17_Chr7g0267731 | 27.077 | 325 | 223 | 7 | 143 | 461 | 628 | 944 | 2.48e-34 | 137 |
| Msa0209220 | MtrunA17_Chr7g0267731 | 42.742 | 124 | 71 | 0 | 1 | 124 | 426 | 549 | 1.06e-29 | 123 |
| Msa0209220 | MtrunA17_Chr2g0296991 | 25.926 | 324 | 229 | 5 | 143 | 462 | 687 | 1003 | 3.78e-34 | 136 |
| Msa0209220 | MtrunA17_Chr2g0296991 | 41.935 | 124 | 72 | 0 | 1 | 124 | 465 | 588 | 6.40e-31 | 126 |
| Msa0209220 | MtrunA17_Chr3g0088821 | 27.301 | 326 | 223 | 7 | 143 | 462 | 720 | 1037 | 6.58e-33 | 132 |
| Msa0209220 | MtrunA17_Chr3g0088821 | 42.742 | 124 | 71 | 0 | 1 | 124 | 514 | 637 | 1.58e-30 | 125 |
| Msa0209220 | MtrunA17_Chr7g0274751 | 31.136 | 273 | 133 | 6 | 1 | 219 | 376 | 647 | 7.32e-33 | 132 |
| Msa0209220 | MtrunA17_Chr2g0322331 | 27.778 | 324 | 224 | 8 | 138 | 455 | 29 | 348 | 1.63e-32 | 127 |
| Msa0209220 | MtrunA17_Chr3g0137951 | 27.711 | 332 | 214 | 10 | 143 | 462 | 728 | 1045 | 6.35e-32 | 129 |
| Msa0209220 | MtrunA17_Chr3g0137951 | 44.355 | 124 | 69 | 0 | 1 | 124 | 524 | 647 | 3.33e-28 | 118 |
| Msa0209220 | MtrunA17_Chr3g0078671 | 24.355 | 349 | 242 | 7 | 127 | 462 | 669 | 1008 | 1.39e-31 | 128 |
| Msa0209220 | MtrunA17_Chr3g0078671 | 42.857 | 133 | 75 | 1 | 1 | 132 | 481 | 613 | 1.39e-28 | 119 |
| Msa0209220 | MtrunA17_Chr1g0201731 | 43.609 | 133 | 74 | 1 | 1 | 132 | 534 | 666 | 1.84e-31 | 128 |
| Msa0209220 | MtrunA17_Chr1g0201731 | 27.640 | 322 | 222 | 5 | 143 | 460 | 740 | 1054 | 1.63e-29 | 122 |
| Msa0209220 | MtrunA17_Chr1g0165421 | 38.686 | 137 | 82 | 2 | 1 | 137 | 572 | 706 | 4.87e-26 | 112 |
| Msa0209220 | MtrunA17_Chr1g0165421 | 27.458 | 295 | 206 | 6 | 172 | 462 | 803 | 1093 | 1.17e-22 | 101 |
| Msa0209220 | MtrunA17_Chr2g0322341 | 46.739 | 92 | 49 | 0 | 1 | 92 | 252 | 343 | 9.71e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209220 | AT4G24000.2 | 33.843 | 458 | 282 | 6 | 1 | 456 | 60 | 498 | 5.47e-96 | 299 |
| Msa0209220 | AT4G23990.2 | 34.498 | 458 | 279 | 5 | 1 | 456 | 67 | 505 | 3.72e-95 | 297 |
| Msa0209220 | AT4G24010.1 | 34.409 | 465 | 283 | 7 | 1 | 463 | 262 | 706 | 4.84e-95 | 303 |
| Msa0209220 | AT4G24000.1 | 33.843 | 458 | 282 | 6 | 1 | 456 | 252 | 690 | 7.60e-94 | 299 |
| Msa0209220 | AT4G23990.1 | 34.498 | 458 | 279 | 5 | 1 | 456 | 281 | 719 | 1.35e-92 | 296 |
| Msa0209220 | AT1G55850.1 | 31.250 | 464 | 291 | 4 | 1 | 461 | 266 | 704 | 1.45e-78 | 259 |
| Msa0209220 | AT5G17420.1 | 30.078 | 512 | 301 | 9 | 1 | 462 | 481 | 985 | 4.58e-72 | 246 |
| Msa0209220 | AT4G18780.1 | 28.791 | 521 | 307 | 6 | 1 | 462 | 427 | 942 | 5.32e-69 | 237 |
| Msa0209220 | AT5G64740.1 | 28.305 | 537 | 296 | 10 | 1 | 461 | 519 | 1042 | 3.46e-66 | 230 |
| Msa0209220 | AT2G32540.1 | 29.278 | 485 | 303 | 11 | 1 | 455 | 251 | 725 | 1.11e-56 | 200 |
| Msa0209220 | AT2G32530.1 | 29.545 | 484 | 303 | 11 | 1 | 455 | 251 | 725 | 3.64e-56 | 199 |
| Msa0209220 | AT4G38190.1 | 27.921 | 505 | 316 | 12 | 1 | 462 | 569 | 1068 | 6.84e-53 | 192 |
| Msa0209220 | AT2G32620.4 | 31.126 | 453 | 264 | 12 | 1 | 420 | 155 | 592 | 3.69e-52 | 186 |
| Msa0209220 | AT2G32620.1 | 31.126 | 453 | 264 | 12 | 1 | 420 | 251 | 688 | 1.28e-51 | 186 |
| Msa0209220 | AT4G15290.1 | 28.728 | 456 | 281 | 14 | 1 | 425 | 251 | 693 | 1.88e-50 | 183 |
| Msa0209220 | AT2G32610.1 | 30.753 | 465 | 262 | 14 | 1 | 424 | 252 | 697 | 2.25e-50 | 183 |
| Msa0209220 | AT3G03050.1 | 26.245 | 522 | 320 | 12 | 1 | 462 | 591 | 1107 | 5.01e-50 | 184 |
| Msa0209220 | AT4G15320.3 | 28.758 | 459 | 278 | 13 | 1 | 425 | 251 | 694 | 3.15e-49 | 179 |
| Msa0209220 | AT4G15320.4 | 28.758 | 459 | 278 | 13 | 1 | 425 | 266 | 709 | 3.41e-49 | 180 |
| Msa0209220 | AT4G15320.5 | 28.758 | 459 | 278 | 13 | 1 | 425 | 251 | 694 | 3.61e-49 | 179 |
| Msa0209220 | AT1G02730.1 | 26.504 | 532 | 309 | 13 | 1 | 459 | 619 | 1141 | 7.75e-49 | 180 |
| Msa0209220 | AT5G16910.1 | 25.819 | 519 | 323 | 12 | 1 | 462 | 594 | 1107 | 1.71e-48 | 179 |
| Msa0209220 | AT2G32620.3 | 35.077 | 325 | 185 | 7 | 1 | 308 | 251 | 566 | 3.48e-48 | 175 |
| Msa0209220 | AT1G32180.1 | 27.011 | 522 | 316 | 11 | 1 | 462 | 428 | 944 | 9.14e-48 | 177 |
| Msa0209220 | AT1G32180.2 | 27.011 | 522 | 316 | 11 | 1 | 462 | 428 | 944 | 9.14e-48 | 177 |
| Msa0209220 | AT2G33100.2 | 25.048 | 523 | 325 | 11 | 1 | 461 | 482 | 999 | 6.09e-47 | 174 |
| Msa0209220 | AT2G33100.1 | 25.048 | 523 | 325 | 11 | 1 | 461 | 482 | 999 | 6.09e-47 | 174 |
| Msa0209220 | AT2G32620.2 | 36.156 | 307 | 166 | 9 | 1 | 290 | 251 | 544 | 1.93e-46 | 169 |
| Msa0209220 | AT4G15320.1 | 27.957 | 372 | 192 | 10 | 1 | 308 | 294 | 653 | 6.41e-37 | 144 |
| Msa0209220 | AT4G15320.2 | 27.957 | 372 | 192 | 10 | 1 | 308 | 251 | 610 | 6.74e-37 | 144 |
| Msa0209220 | AT4G32410.1 | 28.049 | 328 | 218 | 7 | 143 | 462 | 722 | 1039 | 1.19e-34 | 138 |
| Msa0209220 | AT4G32410.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 518 | 641 | 2.11e-28 | 119 |
| Msa0209220 | AT5G09870.1 | 45.865 | 133 | 71 | 1 | 1 | 132 | 507 | 639 | 2.08e-33 | 134 |
| Msa0209220 | AT5G09870.1 | 26.444 | 329 | 219 | 7 | 143 | 461 | 712 | 1027 | 2.17e-31 | 128 |
| Msa0209220 | AT2G21770.1 | 26.748 | 329 | 218 | 7 | 143 | 461 | 730 | 1045 | 3.75e-33 | 134 |
| Msa0209220 | AT2G21770.1 | 43.609 | 133 | 74 | 1 | 1 | 132 | 525 | 657 | 4.77e-32 | 130 |
| Msa0209220 | AT4G39350.1 | 28.049 | 328 | 215 | 6 | 143 | 461 | 726 | 1041 | 4.18e-32 | 130 |
| Msa0209220 | AT4G39350.1 | 45.968 | 124 | 67 | 0 | 1 | 124 | 520 | 643 | 1.07e-31 | 129 |
| Msa0209220 | AT5G44030.3 | 27.385 | 325 | 225 | 7 | 143 | 462 | 411 | 729 | 1.83e-31 | 128 |
| Msa0209220 | AT5G44030.3 | 41.129 | 124 | 73 | 0 | 1 | 124 | 179 | 302 | 1.06e-28 | 120 |
| Msa0209220 | AT2G25540.1 | 26.220 | 328 | 224 | 7 | 143 | 462 | 702 | 1019 | 3.32e-31 | 128 |
| Msa0209220 | AT2G25540.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 498 | 621 | 1.17e-28 | 120 |
| Msa0209220 | AT5G05170.1 | 27.273 | 330 | 218 | 9 | 143 | 462 | 707 | 1024 | 3.36e-31 | 127 |
| Msa0209220 | AT5G05170.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 502 | 625 | 9.01e-31 | 126 |
| Msa0209220 | AT5G44030.2 | 27.385 | 325 | 225 | 7 | 143 | 462 | 719 | 1037 | 3.96e-31 | 127 |
| Msa0209220 | AT5G44030.2 | 41.129 | 124 | 73 | 0 | 1 | 124 | 487 | 610 | 1.87e-28 | 119 |
| Msa0209220 | AT5G44030.1 | 27.385 | 325 | 225 | 7 | 143 | 462 | 690 | 1008 | 4.40e-31 | 127 |
| Msa0209220 | AT5G44030.1 | 40.310 | 129 | 77 | 0 | 1 | 129 | 458 | 586 | 2.06e-28 | 119 |
Find 99 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATATTGTTTGCTTCTT+TGG | 0.107692 | 2_1:+46489739 | Msa0209220:CDS |
| TTTGCTTCTTTGGTGGTTTA+TGG | 0.157159 | 2_1:+46489749 | Msa0209220:CDS |
| GCAACATCTTTAGAGGTTTC+AGG | 0.218423 | 2_1:-46486830 | None:intergenic |
| CCTATGAGAGAAACACAAAT+TGG | 0.275541 | 2_1:+46487933 | Msa0209220:CDS |
| CCAATTTGTGTTTCTCTCAT+AGG | 0.285482 | 2_1:-46487933 | None:intergenic |
| AACAAAAGCAACATCTTTAG+AGG | 0.287887 | 2_1:-46486837 | None:intergenic |
| GCAACAGCCTATATCCTATA+TGG | 0.291265 | 2_1:+46488675 | Msa0209220:CDS |
| TGCTCTAAGTCGTCCTATTC+TGG | 0.291712 | 2_1:+46489837 | Msa0209220:CDS |
| GGATATAGGCTGTTGCAAAT+TGG | 0.294745 | 2_1:-46488668 | None:intergenic |
| AGTTCAGATGACCACTTTAT+CGG | 0.331660 | 2_1:-46488546 | None:intergenic |
| AAATATAGCCCATTCACTTA+TGG | 0.354851 | 2_1:+46488588 | Msa0209220:CDS |
| CAAGGCAAAATTCACTTTAT+CGG | 0.355964 | 2_1:+46489615 | Msa0209220:CDS |
| GATATAGGCTGTTGCAAATT+GGG | 0.362720 | 2_1:-46488667 | None:intergenic |
| AAACTTGAGAGTACCGTTAC+TGG | 0.362985 | 2_1:+46488420 | Msa0209220:CDS |
| TGATTACAGCTTAGGGTGTC+AGG | 0.367099 | 2_1:+46486710 | Msa0209220:intron |
| AGTGGGATTGTAAAATCAAT+TGG | 0.369244 | 2_1:+46489544 | Msa0209220:CDS |
| CTGGTGGCTCCTCGATGATT+TGG | 0.376584 | 2_1:+46489506 | Msa0209220:CDS |
| TTCGGAAGTCCAAACCAAAA+AGG | 0.385517 | 2_1:+46487108 | Msa0209220:CDS |
| TCCTCAGATTTGCTTCTTGA+AGG | 0.386708 | 2_1:+46488704 | Msa0209220:CDS |
| TTAAGAGGTCCAGGTCTAAC+TGG | 0.405441 | 2_1:+46487051 | Msa0209220:CDS |
| CTAAGGTTGTGAAACATTTG+AGG | 0.415344 | 2_1:-46486866 | None:intergenic |
| TATATTGAGGTAATTTCAAC+TGG | 0.415566 | 2_1:+46489487 | Msa0209220:CDS |
| CTATGAGAGAAACACAAATT+GGG | 0.429297 | 2_1:+46487934 | Msa0209220:CDS |
| CTTGATGCTCTATACAACTT+TGG | 0.431278 | 2_1:+46487797 | Msa0209220:CDS |
| AAAGGTTAAACAATGAATAG+TGG | 0.432663 | 2_1:-46488625 | None:intergenic |
| AATATTGTTTGCTTCTTTGG+TGG | 0.435397 | 2_1:+46489742 | Msa0209220:CDS |
| GCTTAAGACTACAAAACTAT+AGG | 0.446879 | 2_1:-46489936 | None:intergenic |
| CATATATGTCTTTCTTGCTA+AGG | 0.452770 | 2_1:-46486883 | None:intergenic |
| CATTACAGGTTACAGATCCT+TGG | 0.455030 | 2_1:+46489419 | Msa0209220:intron |
| GATATAATCCCCTCCAGAAT+AGG | 0.455085 | 2_1:-46489850 | None:intergenic |
| TCTGAGGAACGAATCCATAT+AGG | 0.464687 | 2_1:-46488689 | None:intergenic |
| AACGAATCCATATAGGATAT+AGG | 0.472750 | 2_1:-46488682 | None:intergenic |
| CTTGAAAGGCCATAAGTGAA+TGG | 0.474502 | 2_1:-46488597 | None:intergenic |
| CCTCAGATTTGCTTCTTGAA+GGG | 0.478015 | 2_1:+46488705 | Msa0209220:CDS |
| AGCAGAAGTGCATTACTCTT+CGG | 0.491151 | 2_1:+46487090 | Msa0209220:CDS |
| TTGAAAGGCCATAAGTGAAT+GGG | 0.491625 | 2_1:-46488596 | None:intergenic |
| TAAGCTAAAGAAATATGAGC+AGG | 0.493122 | 2_1:+46489657 | Msa0209220:CDS |
| GTGGGATTGTAAAATCAATT+GGG | 0.497044 | 2_1:+46489545 | Msa0209220:CDS |
| AATATAATGATGAATTTGAC+TGG | 0.497197 | 2_1:-46489470 | None:intergenic |
| TGTGCTTACCAAGTAACAAA+AGG | 0.502993 | 2_1:-46488643 | None:intergenic |
| AATCCCTCTTTCATGTCAGT+TGG | 0.503641 | 2_1:-46488516 | None:intergenic |
| TCAAATTCATCATTATATTG+AGG | 0.507602 | 2_1:+46489474 | Msa0209220:CDS |
| TAAGGTTGTGAAACATTTGA+GGG | 0.508349 | 2_1:-46486865 | None:intergenic |
| ACAAAGTGGAAGGGAATGGA+TGG | 0.509961 | 2_1:+46487027 | Msa0209220:CDS |
| ATCTCCATCCTCTGCAGTGG+AGG | 0.517622 | 2_1:-46488449 | None:intergenic |
| ATGGATGGATTAAGAGGTCC+AGG | 0.518984 | 2_1:+46487042 | Msa0209220:CDS |
| ATTGTGAGTAACACAATCAC+TGG | 0.521404 | 2_1:-46489718 | None:intergenic |
| TTTCTATTAGACAAAGTGGA+AGG | 0.522662 | 2_1:+46487017 | Msa0209220:intron |
| AAACACAAATTGGGGTAATG+AGG | 0.526595 | 2_1:+46487943 | Msa0209220:CDS |
| GAGCAAGTATATAGATAATG+AGG | 0.528120 | 2_1:-46489819 | None:intergenic |
| ATCTCCTCCACTGCAGAGGA+TGG | 0.531864 | 2_1:+46488445 | Msa0209220:CDS |
| GTGGCTCCTCGATGATTTGG+TGG | 0.533592 | 2_1:+46489509 | Msa0209220:CDS |
| CAATCTACGACAAGTACATA+AGG | 0.536818 | 2_1:-46486749 | None:intergenic |
| TTCTATTAGACAAAGTGGAA+GGG | 0.538234 | 2_1:+46487018 | Msa0209220:intron |
| AAGGTTAAACAATGAATAGT+GGG | 0.542914 | 2_1:-46488624 | None:intergenic |
| TTTCCACTGCCAGTTAGACC+TGG | 0.544169 | 2_1:-46487060 | None:intergenic |
| GGTCCAGGTCTAACTGGCAG+TGG | 0.544731 | 2_1:+46487057 | Msa0209220:CDS |
| GGTGGAATGAACAAAGAAGT+GGG | 0.545717 | 2_1:+46489527 | Msa0209220:CDS |
| GTAATTTCTATTAGACAAAG+TGG | 0.553718 | 2_1:+46487013 | Msa0209220:intron |
| CTAAGTCGTCCTATTCTGGA+GGG | 0.554683 | 2_1:+46489841 | Msa0209220:CDS |
| TTAGACAAAGTGGAAGGGAA+TGG | 0.556621 | 2_1:+46487023 | Msa0209220:intron |
| TTGAATCTGTGAGGAACAGA+TGG | 0.556993 | 2_1:-46486571 | None:intergenic |
| GAATAGTGGGCAATCTTGAA+AGG | 0.559596 | 2_1:-46488611 | None:intergenic |
| TGATGGTGCAGCATTGCTCA+TGG | 0.561940 | 2_1:+46489693 | Msa0209220:CDS |
| TGCTCCAACTGACATGAAAG+AGG | 0.562817 | 2_1:+46488512 | Msa0209220:CDS |
| TTTACAAGAAGCATGTGAAG+TGG | 0.562845 | 2_1:+46487901 | Msa0209220:CDS |
| ATTGAGGTAATTTCAACTGG+TGG | 0.563569 | 2_1:+46489490 | Msa0209220:CDS |
| GGCTATCTCCTCCACTGCAG+AGG | 0.572142 | 2_1:+46488441 | Msa0209220:CDS |
| TCTGTTCCTCACAGATTCAA+AGG | 0.573369 | 2_1:+46486574 | Msa0209220:CDS |
| AGGAGGAGCTCTTAATACAT+TGG | 0.573760 | 2_1:+46486594 | Msa0209220:CDS |
| GATTGATTCAACCGATAAAG+TGG | 0.574825 | 2_1:+46488535 | Msa0209220:CDS |
| TATCTATGAAGCGGAAGAGT+GGG | 0.586068 | 2_1:+46489869 | Msa0209220:CDS |
| ATGGAGACTACTCAATGTGA+GGG | 0.586276 | 2_1:+46489768 | Msa0209220:CDS |
| TGGTGGAATGAACAAAGAAG+TGG | 0.587711 | 2_1:+46489526 | Msa0209220:CDS |
| CGAGATACATAAACAACTAG+TGG | 0.592371 | 2_1:-46486538 | None:intergenic |
| ATTTGAACCATGAAAAGAAG+AGG | 0.595843 | 2_1:+46489900 | Msa0209220:three_prime_UTR |
| TTGATCTCCATCCTCTGCAG+TGG | 0.604218 | 2_1:-46488452 | None:intergenic |
| TAAGTCGTCCTATTCTGGAG+GGG | 0.606867 | 2_1:+46489842 | Msa0209220:CDS |
| ATATCTATGAAGCGGAAGAG+TGG | 0.607521 | 2_1:+46489868 | Msa0209220:CDS |
| TCTAAGTCGTCCTATTCTGG+AGG | 0.608583 | 2_1:+46489840 | Msa0209220:CDS |
| GGGAATACCTGTATATCCAA+AGG | 0.611812 | 2_1:+46488725 | Msa0209220:CDS |
| AAGGGAATGGATGGATTAAG+AGG | 0.618466 | 2_1:+46487036 | Msa0209220:CDS |
| TATGAGAGAAACACAAATTG+GGG | 0.621432 | 2_1:+46487935 | Msa0209220:CDS |
| TTTGAACCATGAAAAGAAGA+GGG | 0.624361 | 2_1:+46489901 | Msa0209220:three_prime_UTR |
| TATGGAGACTACTCAATGTG+AGG | 0.626897 | 2_1:+46489767 | Msa0209220:CDS |
| GATTACAGCTTAGGGTGTCA+GGG | 0.630374 | 2_1:+46486711 | Msa0209220:intron |
| GTGTCAGGGATAATCAGCAA+TGG | 0.631176 | 2_1:+46486725 | Msa0209220:CDS |
| CCCTTCAAGAAGCAAATCTG+AGG | 0.636796 | 2_1:-46488705 | None:intergenic |
| AAGCTAAAGAAATATGAGCA+GGG | 0.640748 | 2_1:+46489658 | Msa0209220:CDS |
| GGAGCACATCCTAAGAAGCA+TGG | 0.641531 | 2_1:-46488495 | None:intergenic |
| GCTCCAACTGACATGAAAGA+GGG | 0.649039 | 2_1:+46488513 | Msa0209220:CDS |
| ACTGTAAACACTATAAACCA+AGG | 0.655731 | 2_1:-46489436 | None:intergenic |
| ACATATATGATAGTCAGACT+AGG | 0.669035 | 2_1:+46486897 | Msa0209220:CDS |
| AGGGGATTATATCTATGAAG+CGG | 0.671490 | 2_1:+46489860 | Msa0209220:CDS |
| TTCATTCCACCAAATCATCG+AGG | 0.679487 | 2_1:-46489515 | None:intergenic |
| GTGGAGGAGATAGCCAGTAA+CGG | 0.681972 | 2_1:-46488433 | None:intergenic |
| GCTCCTCCTTTGAATCTGTG+AGG | 0.696490 | 2_1:-46486580 | None:intergenic |
| GTTCCTCACAGATTCAAAGG+AGG | 0.708338 | 2_1:+46486577 | Msa0209220:CDS |
| GAATCACTAAAAGCATTACG+TGG | 0.753334 | 2_1:+46487839 | Msa0209220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAAAGAAAATTAAG+AGG | - | chr2_1:46486652-46486671 | None:intergenic | 10.0% |
| !! | AATTTATTATATTATACACA+GGG | - | chr2_1:46487590-46487609 | None:intergenic | 10.0% |
| !! | AAATTTATTATATTATACAC+AGG | - | chr2_1:46487591-46487610 | None:intergenic | 10.0% |
| !! | CATAATTATATAATTTCATT+TGG | - | chr2_1:46488037-46488056 | None:intergenic | 10.0% |
| !! | ATATTGGATAATTTATAAAT+GGG | - | chr2_1:46489093-46489112 | None:intergenic | 10.0% |
| !! | AATATTGGATAATTTATAAA+TGG | - | chr2_1:46489094-46489113 | None:intergenic | 10.0% |
| !!! | TAAAAAAGTGATTTTAATAT+TGG | - | chr2_1:46489109-46489128 | None:intergenic | 10.0% |
| !!! | AGATAAATAGCTTAAAATTT+TGG | - | chr2_1:46486943-46486962 | None:intergenic | 15.0% |
| !!! | AAAAAGTATTAGTCTTATTT+TGG | - | chr2_1:46487502-46487521 | None:intergenic | 15.0% |
| !! | ATTTATTATATTATACACAG+GGG | - | chr2_1:46487589-46487608 | None:intergenic | 15.0% |
| !!! | TTGTGAATCATAATTTTTTT+AGG | + | chr2_1:46488109-46488128 | Msa0209220:intron | 15.0% |
| !!! | TGTGAATCATAATTTTTTTA+GGG | + | chr2_1:46488110-46488129 | Msa0209220:intron | 15.0% |
| !! | TCTAAGAACTAATTTATAAA+TGG | + | chr2_1:46488827-46488846 | Msa0209220:intron | 15.0% |
| !! | TACATTTAATGAATCAAATA+TGG | + | chr2_1:46488934-46488953 | Msa0209220:intron | 15.0% |
| !!! | TTAATTTTTTTGAACATTAC+AGG | + | chr2_1:46489405-46489424 | Msa0209220:intron | 15.0% |
| !! | GAATTCTAACAAATATTCTT+AGG | + | chr2_1:46487160-46487179 | Msa0209220:intron | 20.0% |
| !!! | ATTCTTAGGATATTGTTTTT+AGG | + | chr2_1:46487174-46487193 | Msa0209220:intron | 20.0% |
| !!! | ATATTGTTTTTAGGAAACAA+AGG | + | chr2_1:46487183-46487202 | Msa0209220:intron | 20.0% |
| !!! | TTTTTTGAATTTATAATGGC+AGG | + | chr2_1:46487764-46487783 | Msa0209220:intron | 20.0% |
| !!! | TTTTTGAATTTATAATGGCA+GGG | + | chr2_1:46487765-46487784 | Msa0209220:intron | 20.0% |
| !! | AATTTAAATTCACACCTTAT+GGG | - | chr2_1:46488147-46488166 | None:intergenic | 20.0% |
| !! | AAATTTAAATTCACACCTTA+TGG | - | chr2_1:46488148-46488167 | None:intergenic | 20.0% |
| !!! | ATTTATCCATATTTTACCTT+TGG | - | chr2_1:46488744-46488763 | None:intergenic | 20.0% |
| !! | TAAAAACTTATGAACACATT+TGG | + | chr2_1:46489180-46489199 | Msa0209220:intron | 20.0% |
| !! | AAAAACTTATGAACACATTT+GGG | + | chr2_1:46489181-46489200 | Msa0209220:intron | 20.0% |
| !! | AATTAATAGAAGTAACATGT+TGG | - | chr2_1:46489391-46489410 | None:intergenic | 20.0% |
| !! | AATATAATGATGAATTTGAC+TGG | - | chr2_1:46489473-46489492 | None:intergenic | 20.0% |
| !! | TCAAATTCATCATTATATTG+AGG | + | chr2_1:46489474-46489493 | Msa0209220:CDS | 20.0% |
| !! | AAACAACGAAAAAAAAGTTT+GGG | + | chr2_1:46489587-46489606 | Msa0209220:CDS | 20.0% |
| !! | ATAAATATTGTTTGCTTCTT+TGG | + | chr2_1:46489739-46489758 | Msa0209220:CDS | 20.0% |
| !!! | AGTTTCAATTGTTTTTAAAG+TGG | + | chr2_1:46490000-46490019 | Msa0209220:three_prime_UTR | 20.0% |
| ! | GTAATTTCTATTAGACAAAG+TGG | + | chr2_1:46487013-46487032 | Msa0209220:intron | 25.0% |
| !!! | TAATTTGTACCTTTTTGGTT+TGG | - | chr2_1:46487120-46487139 | None:intergenic | 25.0% |
| !!! | TGTAGTAATTTGTACCTTTT+TGG | - | chr2_1:46487125-46487144 | None:intergenic | 25.0% |
| ! | AATGAATGTCTTAAGATCAT+TGG | - | chr2_1:46487281-46487300 | None:intergenic | 25.0% |
| !!! | AAGTATTAGTCTTATTTTGG+TGG | - | chr2_1:46487499-46487518 | None:intergenic | 25.0% |
| !!! | AAGACTAATACTTTTTTGTC+CGG | + | chr2_1:46487506-46487525 | Msa0209220:intron | 25.0% |
| !! | TTTTGAATTTATAATGGCAG+GGG | + | chr2_1:46487766-46487785 | Msa0209220:intron | 25.0% |
| ! | AAAACAATTATAATGAGCAG+GGG | - | chr2_1:46488209-46488228 | None:intergenic | 25.0% |
| ! | GAAAACAATTATAATGAGCA+GGG | - | chr2_1:46488210-46488229 | None:intergenic | 25.0% |
| ! | TGAAAACAATTATAATGAGC+AGG | - | chr2_1:46488211-46488230 | None:intergenic | 25.0% |
| !! | TTAATTTGACTGATATTCAC+AGG | + | chr2_1:46488377-46488396 | Msa0209220:intron | 25.0% |
| ! | AAGGTTAAACAATGAATAGT+GGG | - | chr2_1:46488627-46488646 | None:intergenic | 25.0% |
| ! | AAAGGTTAAACAATGAATAG+TGG | - | chr2_1:46488628-46488647 | None:intergenic | 25.0% |
| !! | TTGTTTAACCTTTTGTTACT+TGG | + | chr2_1:46488635-46488654 | Msa0209220:CDS | 25.0% |
| !! | TATTTTACCTTTGGATATAC+AGG | - | chr2_1:46488735-46488754 | None:intergenic | 25.0% |
| ! | GTATATCCAAAGGTAAAATA+TGG | + | chr2_1:46488735-46488754 | Msa0209220:intron | 25.0% |
| ! | TATATTGAGGTAATTTCAAC+TGG | + | chr2_1:46489487-46489506 | Msa0209220:CDS | 25.0% |
| ! | GAAACAACGAAAAAAAAGTT+TGG | + | chr2_1:46489586-46489605 | Msa0209220:CDS | 25.0% |
| ATCAAATGTGATTACAGCTT+AGG | + | chr2_1:46486702-46486721 | Msa0209220:intron | 30.0% | |
| TCAAATGTGATTACAGCTTA+GGG | + | chr2_1:46486703-46486722 | Msa0209220:intron | 30.0% | |
| ! | AAAAAAGCACATGGATTGTT+TGG | - | chr2_1:46486804-46486823 | None:intergenic | 30.0% |
| AACAAAAGCAACATCTTTAG+AGG | - | chr2_1:46486840-46486859 | None:intergenic | 30.0% | |
| TAAGGTTGTGAAACATTTGA+GGG | - | chr2_1:46486868-46486887 | None:intergenic | 30.0% | |
| CATATATGTCTTTCTTGCTA+AGG | - | chr2_1:46486886-46486905 | None:intergenic | 30.0% | |
| ACATATATGATAGTCAGACT+AGG | + | chr2_1:46486897-46486916 | Msa0209220:CDS | 30.0% | |
| TTTCTATTAGACAAAGTGGA+AGG | + | chr2_1:46487017-46487036 | Msa0209220:intron | 30.0% | |
| TTCTATTAGACAAAGTGGAA+GGG | + | chr2_1:46487018-46487037 | Msa0209220:intron | 30.0% | |
| TTAGAATTCTCGAAACTGTA+AGG | - | chr2_1:46487149-46487168 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr2_1:46487421-46487440 | Msa0209220:intron | 30.0% | |
| !!! | TATTAGTCTTATTTTGGTGG+TGG | - | chr2_1:46487496-46487515 | None:intergenic | 30.0% |
| !!! | AGACTAATACTTTTTTGTCC+GGG | + | chr2_1:46487507-46487526 | Msa0209220:intron | 30.0% |
| TAGAGATTCTATTTCAAACC+CGG | - | chr2_1:46487528-46487547 | None:intergenic | 30.0% | |
| ATTTATGTTACCTTCACCAA+TGG | + | chr2_1:46487653-46487672 | Msa0209220:intron | 30.0% | |
| ! | ATTGATTTCACCATATCCAT+TGG | - | chr2_1:46487672-46487691 | None:intergenic | 30.0% |
| CTATGAGAGAAACACAAATT+GGG | + | chr2_1:46487934-46487953 | Msa0209220:CDS | 30.0% | |
| TATGAGAGAAACACAAATTG+GGG | + | chr2_1:46487935-46487954 | Msa0209220:CDS | 30.0% | |
| ! | GTTTAATGTGAGTCAGATTT+TGG | - | chr2_1:46488328-46488347 | None:intergenic | 30.0% |
| AAATATAGCCCATTCACTTA+TGG | + | chr2_1:46488588-46488607 | Msa0209220:CDS | 30.0% | |
| AACGAATCCATATAGGATAT+AGG | - | chr2_1:46488685-46488704 | None:intergenic | 30.0% | |
| TTTCTTAACATGTACCCTAA+GGG | + | chr2_1:46489052-46489071 | Msa0209220:intron | 30.0% | |
| ACTGTAAACACTATAAACCA+AGG | - | chr2_1:46489439-46489458 | None:intergenic | 30.0% | |
| AGTGGGATTGTAAAATCAAT+TGG | + | chr2_1:46489544-46489563 | Msa0209220:CDS | 30.0% | |
| GTGGGATTGTAAAATCAATT+GGG | + | chr2_1:46489545-46489564 | Msa0209220:CDS | 30.0% | |
| !! | AAAAAAGTTTGGGTTGAACA+AGG | + | chr2_1:46489597-46489616 | Msa0209220:CDS | 30.0% |
| CAAGGCAAAATTCACTTTAT+CGG | + | chr2_1:46489615-46489634 | Msa0209220:CDS | 30.0% | |
| TAAGCTAAAGAAATATGAGC+AGG | + | chr2_1:46489657-46489676 | Msa0209220:CDS | 30.0% | |
| AAGCTAAAGAAATATGAGCA+GGG | + | chr2_1:46489658-46489677 | Msa0209220:CDS | 30.0% | |
| !! | CAGGGTAAGTTTAATTTTGA+TGG | + | chr2_1:46489676-46489695 | Msa0209220:CDS | 30.0% |
| AATATTGTTTGCTTCTTTGG+TGG | + | chr2_1:46489742-46489761 | Msa0209220:CDS | 30.0% | |
| !! | AGGGATTTTGATGAAATGTT+TGG | + | chr2_1:46489787-46489806 | Msa0209220:CDS | 30.0% |
| GAGCAAGTATATAGATAATG+AGG | - | chr2_1:46489822-46489841 | None:intergenic | 30.0% | |
| ATTTGAACCATGAAAAGAAG+AGG | + | chr2_1:46489900-46489919 | Msa0209220:three_prime_UTR | 30.0% | |
| TTTGAACCATGAAAAGAAGA+GGG | + | chr2_1:46489901-46489920 | Msa0209220:three_prime_UTR | 30.0% | |
| GCTTAAGACTACAAAACTAT+AGG | - | chr2_1:46489939-46489958 | None:intergenic | 30.0% | |
| CGAGATACATAAACAACTAG+TGG | - | chr2_1:46486541-46486560 | None:intergenic | 35.0% | |
| CAATCTACGACAAGTACATA+AGG | - | chr2_1:46486752-46486771 | None:intergenic | 35.0% | |
| ! | AGGATCAAGAAAAAAGCACA+TGG | - | chr2_1:46486813-46486832 | None:intergenic | 35.0% |
| CTAAGGTTGTGAAACATTTG+AGG | - | chr2_1:46486869-46486888 | None:intergenic | 35.0% | |
| TCTTCTAAGCTTATCTCAGT+TGG | + | chr2_1:46487394-46487413 | Msa0209220:intron | 35.0% | |
| ! | TAAGCTTATCTCAGTTGGTA+GGG | + | chr2_1:46487399-46487418 | Msa0209220:intron | 35.0% |
| GGTAAGTAACACAATTGGTT+TGG | - | chr2_1:46487568-46487587 | None:intergenic | 35.0% | |
| CTTGATGCTCTATACAACTT+TGG | + | chr2_1:46487797-46487816 | Msa0209220:CDS | 35.0% | |
| !! | GAATCACTAAAAGCATTACG+TGG | + | chr2_1:46487839-46487858 | Msa0209220:CDS | 35.0% |
| ! | TTTACAAGAAGCATGTGAAG+TGG | + | chr2_1:46487901-46487920 | Msa0209220:CDS | 35.0% |
| CCAATTTGTGTTTCTCTCAT+AGG | - | chr2_1:46487936-46487955 | None:intergenic | 35.0% | |
| CCTATGAGAGAAACACAAAT+TGG | + | chr2_1:46487933-46487952 | Msa0209220:CDS | 35.0% | |
| AAACACAAATTGGGGTAATG+AGG | + | chr2_1:46487943-46487962 | Msa0209220:CDS | 35.0% | |
| ! | TACAACGTCACACTTTAAAG+AGG | - | chr2_1:46488182-46488201 | None:intergenic | 35.0% |
| ATTTGACTGATATTCACAGG+TGG | + | chr2_1:46488380-46488399 | Msa0209220:intron | 35.0% | |
| TTTGACTGATATTCACAGGT+GGG | + | chr2_1:46488381-46488400 | Msa0209220:intron | 35.0% | |
| !! | CTAAGAAGCATGGTCTTTTT+GGG | - | chr2_1:46488488-46488507 | None:intergenic | 35.0% |
| ! | GATTGATTCAACCGATAAAG+TGG | + | chr2_1:46488535-46488554 | Msa0209220:CDS | 35.0% |
| AGTTCAGATGACCACTTTAT+CGG | - | chr2_1:46488549-46488568 | None:intergenic | 35.0% | |
| TTGAAAGGCCATAAGTGAAT+GGG | - | chr2_1:46488599-46488618 | None:intergenic | 35.0% | |
| TGTGCTTACCAAGTAACAAA+AGG | - | chr2_1:46488646-46488665 | None:intergenic | 35.0% | |
| GATATAGGCTGTTGCAAATT+GGG | - | chr2_1:46488670-46488689 | None:intergenic | 35.0% | |
| !! | GTGTCTTAAGTTAGCCTTAA+GGG | - | chr2_1:46488868-46488887 | None:intergenic | 35.0% |
| !! | TGTGTCTTAAGTTAGCCTTA+AGG | - | chr2_1:46488869-46488888 | None:intergenic | 35.0% |
| GTTTCTTAACATGTACCCTA+AGG | + | chr2_1:46489051-46489070 | Msa0209220:intron | 35.0% | |
| ACTTATGAACACATTTGGGT+TGG | + | chr2_1:46489185-46489204 | Msa0209220:intron | 35.0% | |
| ! | CTTAAGAAGAGCACATTTCA+AGG | - | chr2_1:46489232-46489251 | None:intergenic | 35.0% |
| CTTGAAATGTGCTCTTCTTA+AGG | + | chr2_1:46489230-46489249 | Msa0209220:intron | 35.0% | |
| ATTGAGGTAATTTCAACTGG+TGG | + | chr2_1:46489490-46489509 | Msa0209220:CDS | 35.0% | |
| ATTGTGAGTAACACAATCAC+TGG | - | chr2_1:46489721-46489740 | None:intergenic | 35.0% | |
| ! | TTTGCTTCTTTGGTGGTTTA+TGG | + | chr2_1:46489749-46489768 | Msa0209220:CDS | 35.0% |
| AGGGGATTATATCTATGAAG+CGG | + | chr2_1:46489860-46489879 | Msa0209220:CDS | 35.0% | |
| ! | ACATATCCCTCTTCTTTTCA+TGG | - | chr2_1:46489910-46489929 | None:intergenic | 35.0% |
| TTGAATCTGTGAGGAACAGA+TGG | - | chr2_1:46486574-46486593 | None:intergenic | 40.0% | |
| TCTGTTCCTCACAGATTCAA+AGG | + | chr2_1:46486574-46486593 | Msa0209220:CDS | 40.0% | |
| AGGAGGAGCTCTTAATACAT+TGG | + | chr2_1:46486594-46486613 | Msa0209220:CDS | 40.0% | |
| ! | GCAACATCTTTAGAGGTTTC+AGG | - | chr2_1:46486833-46486852 | None:intergenic | 40.0% |
| !! | TCAGACTAGGACTGCTTTTA+CGG | + | chr2_1:46486910-46486929 | Msa0209220:CDS | 40.0% |
| TTAGACAAAGTGGAAGGGAA+TGG | + | chr2_1:46487023-46487042 | Msa0209220:intron | 40.0% | |
| !! | AAGGGAATGGATGGATTAAG+AGG | + | chr2_1:46487036-46487055 | Msa0209220:CDS | 40.0% |
| ! | AGCAGAAGTGCATTACTCTT+CGG | + | chr2_1:46487090-46487109 | Msa0209220:CDS | 40.0% |
| TTCGGAAGTCCAAACCAAAA+AGG | + | chr2_1:46487108-46487127 | Msa0209220:CDS | 40.0% | |
| CTAAGCTTATCTCAGTTGGT+AGG | + | chr2_1:46487398-46487417 | Msa0209220:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+AGG | + | chr2_1:46487428-46487447 | Msa0209220:intron | 40.0% | |
| ACAGGGGTAAGTAACACAAT+TGG | - | chr2_1:46487573-46487592 | None:intergenic | 40.0% | |
| GTTACCTTCACCAATGGATA+TGG | + | chr2_1:46487659-46487678 | Msa0209220:intron | 40.0% | |
| TTCACCATATCCATTGGTGA+AGG | - | chr2_1:46487666-46487685 | None:intergenic | 40.0% | |
| TGGTGAAATCAATCGTAGAG+AGG | + | chr2_1:46487679-46487698 | Msa0209220:intron | 40.0% | |
| TGTGCCAATGAAAGTTCGTT+CGG | + | chr2_1:46488077-46488096 | Msa0209220:intron | 40.0% | |
| !! | AAACTTGAGAGTACCGTTAC+TGG | + | chr2_1:46488420-46488439 | Msa0209220:CDS | 40.0% |
| !! | CCTAAGAAGCATGGTCTTTT+TGG | - | chr2_1:46488489-46488508 | None:intergenic | 40.0% |
| CCAAAAAGACCATGCTTCTT+AGG | + | chr2_1:46488486-46488505 | Msa0209220:CDS | 40.0% | |
| AATCCCTCTTTCATGTCAGT+TGG | - | chr2_1:46488519-46488538 | None:intergenic | 40.0% | |
| CTTGAAAGGCCATAAGTGAA+TGG | - | chr2_1:46488600-46488619 | None:intergenic | 40.0% | |
| !! | GAATAGTGGGCAATCTTGAA+AGG | - | chr2_1:46488614-46488633 | None:intergenic | 40.0% |
| GGATATAGGCTGTTGCAAAT+TGG | - | chr2_1:46488671-46488690 | None:intergenic | 40.0% | |
| GCAACAGCCTATATCCTATA+TGG | + | chr2_1:46488675-46488694 | Msa0209220:CDS | 40.0% | |
| TCTGAGGAACGAATCCATAT+AGG | - | chr2_1:46488692-46488711 | None:intergenic | 40.0% | |
| ! | TCCTCAGATTTGCTTCTTGA+AGG | + | chr2_1:46488704-46488723 | Msa0209220:CDS | 40.0% |
| ! | CCTCAGATTTGCTTCTTGAA+GGG | + | chr2_1:46488705-46488724 | Msa0209220:CDS | 40.0% |
| GGGAATACCTGTATATCCAA+AGG | + | chr2_1:46488725-46488744 | Msa0209220:CDS | 40.0% | |
| ! | AATGCTAACTTGTGCCCTTA+AGG | + | chr2_1:46488851-46488870 | Msa0209220:intron | 40.0% |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | - | chr2_1:46489069-46489088 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | - | chr2_1:46489070-46489089 | None:intergenic | 40.0% |
| !! | TTGGGTTGGTTTAGTGATGT+TGG | + | chr2_1:46489199-46489218 | Msa0209220:intron | 40.0% |
| CATTACAGGTTACAGATCCT+TGG | + | chr2_1:46489419-46489438 | Msa0209220:intron | 40.0% | |
| TTCATTCCACCAAATCATCG+AGG | - | chr2_1:46489518-46489537 | None:intergenic | 40.0% | |
| TGGTGGAATGAACAAAGAAG+TGG | + | chr2_1:46489526-46489545 | Msa0209220:CDS | 40.0% | |
| GGTGGAATGAACAAAGAAGT+GGG | + | chr2_1:46489527-46489546 | Msa0209220:CDS | 40.0% | |
| TATGGAGACTACTCAATGTG+AGG | + | chr2_1:46489767-46489786 | Msa0209220:CDS | 40.0% | |
| ATGGAGACTACTCAATGTGA+GGG | + | chr2_1:46489768-46489787 | Msa0209220:CDS | 40.0% | |
| GATATAATCCCCTCCAGAAT+AGG | - | chr2_1:46489853-46489872 | None:intergenic | 40.0% | |
| ATATCTATGAAGCGGAAGAG+TGG | + | chr2_1:46489868-46489887 | Msa0209220:CDS | 40.0% | |
| TATCTATGAAGCGGAAGAGT+GGG | + | chr2_1:46489869-46489888 | Msa0209220:CDS | 40.0% | |
| GTTCCTCACAGATTCAAAGG+AGG | + | chr2_1:46486577-46486596 | Msa0209220:CDS | 45.0% | |
| ! | TGATTACAGCTTAGGGTGTC+AGG | + | chr2_1:46486710-46486729 | Msa0209220:intron | 45.0% |
| ! | GATTACAGCTTAGGGTGTCA+GGG | + | chr2_1:46486711-46486730 | Msa0209220:intron | 45.0% |
| GTGTCAGGGATAATCAGCAA+TGG | + | chr2_1:46486725-46486744 | Msa0209220:CDS | 45.0% | |
| ACAAAGTGGAAGGGAATGGA+TGG | + | chr2_1:46487027-46487046 | Msa0209220:CDS | 45.0% | |
| !! | ATGGATGGATTAAGAGGTCC+AGG | + | chr2_1:46487042-46487061 | Msa0209220:CDS | 45.0% |
| TTAAGAGGTCCAGGTCTAAC+TGG | + | chr2_1:46487051-46487070 | Msa0209220:CDS | 45.0% | |
| CAAATCCGAAGTTCGAACCT+CGG | + | chr2_1:46487470-46487489 | Msa0209220:intron | 45.0% | |
| CCATCCGAACGAACTTTCAT+TGG | - | chr2_1:46488084-46488103 | None:intergenic | 45.0% | |
| CCAATGAAAGTTCGTTCGGA+TGG | + | chr2_1:46488081-46488100 | Msa0209220:intron | 45.0% | |
| GGGAGTGAATCATACCCATA+AGG | + | chr2_1:46488130-46488149 | Msa0209220:intron | 45.0% | |
| TGCTCCAACTGACATGAAAG+AGG | + | chr2_1:46488512-46488531 | Msa0209220:CDS | 45.0% | |
| GCTCCAACTGACATGAAAGA+GGG | + | chr2_1:46488513-46488532 | Msa0209220:CDS | 45.0% | |
| CCCTTCAAGAAGCAAATCTG+AGG | - | chr2_1:46488708-46488727 | None:intergenic | 45.0% | |
| TGTGCTCTTCTTAAGGTCTC+AGG | + | chr2_1:46489237-46489256 | Msa0209220:intron | 45.0% | |
| ! | TGCTCTAAGTCGTCCTATTC+TGG | + | chr2_1:46489837-46489856 | Msa0209220:CDS | 45.0% |
| TCTAAGTCGTCCTATTCTGG+AGG | + | chr2_1:46489840-46489859 | Msa0209220:CDS | 45.0% | |
| CTAAGTCGTCCTATTCTGGA+GGG | + | chr2_1:46489841-46489860 | Msa0209220:CDS | 45.0% | |
| ! | TAAGTCGTCCTATTCTGGAG+GGG | + | chr2_1:46489842-46489861 | Msa0209220:CDS | 45.0% |
| !! | AAATTCAAAAAAAAAAAAAA+AGG | - | chr2_1:46487756-46487775 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTGAATTTATAA+TGG | + | chr2_1:46487760-46487779 | Msa0209220:intron | 5.0% |
| GCTCCTCCTTTGAATCTGTG+AGG | - | chr2_1:46486583-46486602 | None:intergenic | 50.0% | |
| TTTCCACTGCCAGTTAGACC+TGG | - | chr2_1:46487063-46487082 | None:intergenic | 50.0% | |
| !! | TCGAACTTCGGATTTGGTGG+TGG | - | chr2_1:46487466-46487485 | None:intergenic | 50.0% |
| GGTTCGAACTTCGGATTTGG+TGG | - | chr2_1:46487469-46487488 | None:intergenic | 50.0% | |
| CGAGGTTCGAACTTCGGATT+TGG | - | chr2_1:46487472-46487491 | None:intergenic | 50.0% | |
| !!! | TCTTATTTTGGTGGTGGCCG+AGG | - | chr2_1:46487490-46487509 | None:intergenic | 50.0% |
| GTGGAGGAGATAGCCAGTAA+CGG | - | chr2_1:46488436-46488455 | None:intergenic | 50.0% | |
| TTGATCTCCATCCTCTGCAG+TGG | - | chr2_1:46488455-46488474 | None:intergenic | 50.0% | |
| GGAGCACATCCTAAGAAGCA+TGG | - | chr2_1:46488498-46488517 | None:intergenic | 50.0% | |
| ! | TGATGGTGCAGCATTGCTCA+TGG | + | chr2_1:46489693-46489712 | Msa0209220:CDS | 50.0% |
| AAGGTCCGAGGTTCGAACCT+CGG | + | chr2_1:46487440-46487459 | Msa0209220:intron | 55.0% | |
| ATCTCCTCCACTGCAGAGGA+TGG | + | chr2_1:46488445-46488464 | Msa0209220:CDS | 55.0% | |
| ATCTCCATCCTCTGCAGTGG+AGG | - | chr2_1:46488452-46488471 | None:intergenic | 55.0% | |
| CTGGTGGCTCCTCGATGATT+TGG | + | chr2_1:46489506-46489525 | Msa0209220:CDS | 55.0% | |
| ! | GTGGCTCCTCGATGATTTGG+TGG | + | chr2_1:46489509-46489528 | Msa0209220:CDS | 55.0% |
| GGTCCAGGTCTAACTGGCAG+TGG | + | chr2_1:46487057-46487076 | Msa0209220:CDS | 60.0% | |
| !! | TTCGGATTTGGTGGTGGCCG+AGG | - | chr2_1:46487460-46487479 | None:intergenic | 60.0% |
| GGTGGCCGAGGTTCGAACTT+CGG | - | chr2_1:46487478-46487497 | None:intergenic | 60.0% | |
| GGCTATCTCCTCCACTGCAG+AGG | + | chr2_1:46488441-46488460 | Msa0209220:CDS | 60.0% | |
| GGTGGCCGAGGTTCGAACCT+CGG | - | chr2_1:46487448-46487467 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 46486535 | 46490023 | 46486535 | ID=Msa0209220;Name=Msa0209220 |
| chr2_1 | mRNA | 46486535 | 46490023 | 46486535 | ID=Msa0209220-mRNA-1;Parent=Msa0209220;Name=Msa0209220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.8|0.83|1|1|1|6|129|463 |
| chr2_1 | exon | 46486535 | 46486615 | 46486535 | ID=Msa0209220-mRNA-1:exon:13294;Parent=Msa0209220-mRNA-1 |
| chr2_1 | exon | 46486719 | 46486931 | 46486719 | ID=Msa0209220-mRNA-1:exon:13295;Parent=Msa0209220-mRNA-1 |
| chr2_1 | exon | 46487027 | 46487129 | 46487027 | ID=Msa0209220-mRNA-1:exon:13296;Parent=Msa0209220-mRNA-1 |
| chr2_1 | exon | 46487786 | 46487964 | 46487786 | ID=Msa0209220-mRNA-1:exon:13297;Parent=Msa0209220-mRNA-1 |
| chr2_1 | exon | 46488399 | 46488746 | 46488399 | ID=Msa0209220-mRNA-1:exon:13298;Parent=Msa0209220-mRNA-1 |
| chr2_1 | exon | 46489427 | 46490023 | 46489427 | ID=Msa0209220-mRNA-1:exon:13299;Parent=Msa0209220-mRNA-1 |
| chr2_1 | CDS | 46486535 | 46486615 | 46486535 | ID=Msa0209220-mRNA-1:cds;Parent=Msa0209220-mRNA-1 |
| chr2_1 | CDS | 46486719 | 46486931 | 46486719 | ID=Msa0209220-mRNA-1:cds;Parent=Msa0209220-mRNA-1 |
| chr2_1 | CDS | 46487027 | 46487129 | 46487027 | ID=Msa0209220-mRNA-1:cds;Parent=Msa0209220-mRNA-1 |
| chr2_1 | CDS | 46487786 | 46487964 | 46487786 | ID=Msa0209220-mRNA-1:cds;Parent=Msa0209220-mRNA-1 |
| chr2_1 | CDS | 46488399 | 46488746 | 46488399 | ID=Msa0209220-mRNA-1:cds;Parent=Msa0209220-mRNA-1 |
| chr2_1 | CDS | 46489427 | 46489894 | 46489427 | ID=Msa0209220-mRNA-1:cds;Parent=Msa0209220-mRNA-1 |
| chr2_1 | three_prime_UTR | 46489895 | 46490023 | 46489895 | ID=Msa0209220-mRNA-1:three_prime_utr;Parent=Msa0209220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
