Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208410 | QKE45416.1 | 98.272 | 463 | 8 | 0 | 1 | 463 | 253 | 715 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208410 | sp|Q570S7|CSLG1_ARATH | 33.978 | 465 | 285 | 7 | 1 | 463 | 262 | 706 | 2.29e-92 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208410 | A0A7D3QB06 | 98.272 | 463 | 8 | 0 | 1 | 463 | 253 | 715 | 0.0 | 948 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208410 | Msa0208430 | 0.981014 | 1.437859e-151 | -8.615850e-47 |
| Msa0208410 | Msa0209200 | 0.936910 | 8.137767e-98 | -8.615850e-47 |
| Msa0208410 | Msa0209220 | 0.826307 | 2.914201e-54 | -8.615850e-47 |
| Msa0208410 | Msa0283190 | 0.826766 | 2.265694e-54 | -8.615850e-47 |
| Msa0208410 | Msa1343110 | 0.826533 | 2.575390e-54 | -8.615850e-47 |
| Msa0208410 | Msa1353500 | 0.833122 | 6.392072e-56 | -8.615850e-47 |
| Msa0208410 | Msa1442090 | 0.964141 | 5.910434e-123 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208410 | MtrunA17_Chr2g0307191 | 97.624 | 463 | 11 | 0 | 1 | 463 | 230 | 692 | 0.0 | 941 |
| Msa0208410 | MtrunA17_Chr3g0095791 | 82.505 | 463 | 81 | 0 | 1 | 463 | 229 | 691 | 0.0 | 815 |
| Msa0208410 | MtrunA17_Chr2g0298581 | 82.073 | 463 | 83 | 0 | 1 | 463 | 230 | 692 | 0.0 | 814 |
| Msa0208410 | MtrunA17_Chr3g0077511 | 69.913 | 462 | 137 | 1 | 4 | 463 | 233 | 694 | 0.0 | 699 |
| Msa0208410 | MtrunA17_Chr4g0046401 | 44.589 | 462 | 252 | 2 | 1 | 461 | 254 | 712 | 5.63e-132 | 398 |
| Msa0208410 | MtrunA17_Chr1g0186381 | 41.720 | 465 | 260 | 4 | 1 | 461 | 254 | 711 | 1.71e-127 | 387 |
| Msa0208410 | MtrunA17_Chr3g0102531 | 33.547 | 468 | 286 | 5 | 1 | 461 | 257 | 706 | 1.84e-87 | 282 |
| Msa0208410 | MtrunA17_Chr3g0102541 | 33.051 | 472 | 289 | 8 | 1 | 463 | 258 | 711 | 3.30e-86 | 279 |
| Msa0208410 | MtrunA17_Chr3g0102551 | 32.051 | 468 | 293 | 5 | 1 | 463 | 268 | 715 | 1.21e-81 | 267 |
| Msa0208410 | MtrunA17_Chr8g0379241 | 29.264 | 516 | 305 | 7 | 1 | 462 | 439 | 948 | 2.97e-68 | 234 |
| Msa0208410 | MtrunA17_Chr2g0284211 | 28.269 | 520 | 308 | 7 | 1 | 462 | 424 | 936 | 1.18e-65 | 227 |
| Msa0208410 | MtrunA17_Chr8g0364641 | 30.754 | 504 | 297 | 11 | 1 | 462 | 447 | 940 | 1.52e-65 | 227 |
| Msa0208410 | MtrunA17_Chr4g0073711 | 28.180 | 511 | 311 | 7 | 1 | 462 | 494 | 997 | 4.89e-65 | 226 |
| Msa0208410 | MtrunA17_Chr2g0307231 | 94.118 | 102 | 6 | 0 | 79 | 180 | 1 | 102 | 1.47e-63 | 201 |
| Msa0208410 | MtrunA17_Chr2g0322361 | 30.277 | 469 | 313 | 8 | 1 | 457 | 253 | 719 | 1.34e-61 | 213 |
| Msa0208410 | MtrunA17_Chr1g0183381 | 27.866 | 506 | 313 | 10 | 1 | 462 | 366 | 863 | 1.14e-60 | 213 |
| Msa0208410 | MtrunA17_Chr4g0025201 | 29.387 | 473 | 317 | 11 | 1 | 460 | 247 | 715 | 1.17e-60 | 211 |
| Msa0208410 | MtrunA17_Chr2g0322371 | 29.810 | 473 | 310 | 9 | 1 | 457 | 243 | 709 | 3.75e-59 | 206 |
| Msa0208410 | MtrunA17_Chr2g0322351 | 30.213 | 470 | 300 | 13 | 1 | 455 | 248 | 704 | 3.08e-58 | 204 |
| Msa0208410 | MtrunA17_Chr2g0297351 | 27.767 | 515 | 310 | 15 | 1 | 459 | 475 | 983 | 1.14e-52 | 191 |
| Msa0208410 | MtrunA17_Chr5g0410641 | 25.670 | 522 | 323 | 12 | 1 | 462 | 567 | 1083 | 2.54e-52 | 190 |
| Msa0208410 | MtrunA17_Chr4g0039801 | 27.151 | 523 | 314 | 11 | 1 | 462 | 588 | 1104 | 1.44e-49 | 182 |
| Msa0208410 | MtrunA17_Chr1g0165411 | 27.148 | 512 | 319 | 10 | 1 | 462 | 558 | 1065 | 2.90e-49 | 181 |
| Msa0208410 | MtrunA17_Chr7g0269741 | 26.654 | 544 | 293 | 14 | 1 | 461 | 611 | 1131 | 3.26e-46 | 172 |
| Msa0208410 | MtrunA17_Chr2g0307221 | 90.667 | 75 | 7 | 0 | 235 | 309 | 1 | 75 | 1.92e-42 | 145 |
| Msa0208410 | MtrunA17_Chr8g0352231 | 26.536 | 358 | 240 | 8 | 111 | 462 | 697 | 1037 | 1.05e-34 | 138 |
| Msa0208410 | MtrunA17_Chr8g0352231 | 41.667 | 132 | 77 | 0 | 1 | 132 | 514 | 645 | 2.50e-30 | 125 |
| Msa0208410 | MtrunA17_Chr8g0383701 | 29.102 | 323 | 218 | 6 | 143 | 461 | 739 | 1054 | 3.95e-34 | 136 |
| Msa0208410 | MtrunA17_Chr8g0383701 | 42.105 | 133 | 76 | 1 | 1 | 132 | 532 | 664 | 3.95e-30 | 124 |
| Msa0208410 | MtrunA17_Chr2g0322331 | 28.395 | 324 | 222 | 8 | 138 | 455 | 29 | 348 | 1.70e-33 | 130 |
| Msa0208410 | MtrunA17_Chr7g0267731 | 26.769 | 325 | 224 | 7 | 143 | 461 | 628 | 944 | 3.05e-33 | 133 |
| Msa0208410 | MtrunA17_Chr7g0267731 | 42.742 | 124 | 71 | 0 | 1 | 124 | 426 | 549 | 1.69e-29 | 122 |
| Msa0208410 | MtrunA17_Chr2g0296991 | 25.309 | 324 | 231 | 5 | 143 | 462 | 687 | 1003 | 8.15e-33 | 132 |
| Msa0208410 | MtrunA17_Chr2g0296991 | 41.935 | 124 | 72 | 0 | 1 | 124 | 465 | 588 | 1.17e-30 | 125 |
| Msa0208410 | MtrunA17_Chr7g0274751 | 31.136 | 273 | 133 | 6 | 1 | 219 | 376 | 647 | 1.08e-32 | 131 |
| Msa0208410 | MtrunA17_Chr3g0088821 | 26.687 | 326 | 225 | 7 | 143 | 462 | 720 | 1037 | 1.12e-31 | 129 |
| Msa0208410 | MtrunA17_Chr3g0088821 | 42.742 | 124 | 71 | 0 | 1 | 124 | 514 | 637 | 2.64e-30 | 124 |
| Msa0208410 | MtrunA17_Chr1g0201731 | 43.609 | 133 | 74 | 1 | 1 | 132 | 534 | 666 | 2.92e-31 | 127 |
| Msa0208410 | MtrunA17_Chr1g0201731 | 27.329 | 322 | 223 | 5 | 143 | 460 | 740 | 1054 | 2.39e-28 | 119 |
| Msa0208410 | MtrunA17_Chr3g0137951 | 27.108 | 332 | 216 | 10 | 143 | 462 | 728 | 1045 | 1.73e-30 | 125 |
| Msa0208410 | MtrunA17_Chr3g0137951 | 44.355 | 124 | 69 | 0 | 1 | 124 | 524 | 647 | 5.17e-28 | 117 |
| Msa0208410 | MtrunA17_Chr3g0078671 | 24.069 | 349 | 243 | 7 | 127 | 462 | 669 | 1008 | 2.37e-30 | 125 |
| Msa0208410 | MtrunA17_Chr3g0078671 | 42.857 | 133 | 75 | 1 | 1 | 132 | 481 | 613 | 2.15e-28 | 119 |
| Msa0208410 | MtrunA17_Chr1g0165421 | 38.686 | 137 | 82 | 2 | 1 | 137 | 572 | 706 | 7.34e-26 | 111 |
| Msa0208410 | MtrunA17_Chr1g0165421 | 27.119 | 295 | 207 | 6 | 172 | 462 | 803 | 1093 | 8.96e-22 | 99.0 |
| Msa0208410 | MtrunA17_Chr2g0322341 | 47.826 | 92 | 48 | 0 | 1 | 92 | 252 | 343 | 3.93e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208410 | AT4G24000.2 | 35.059 | 425 | 257 | 5 | 1 | 423 | 60 | 467 | 1.48e-94 | 295 |
| Msa0208410 | AT4G23990.2 | 35.514 | 428 | 257 | 4 | 1 | 426 | 67 | 477 | 8.30e-94 | 294 |
| Msa0208410 | AT4G24010.1 | 33.978 | 465 | 285 | 7 | 1 | 463 | 262 | 706 | 2.33e-93 | 299 |
| Msa0208410 | AT4G24000.1 | 35.059 | 425 | 257 | 5 | 1 | 423 | 252 | 659 | 2.34e-92 | 295 |
| Msa0208410 | AT4G23990.1 | 35.514 | 428 | 257 | 4 | 1 | 426 | 281 | 691 | 2.73e-91 | 293 |
| Msa0208410 | AT1G55850.1 | 31.897 | 464 | 288 | 5 | 1 | 461 | 266 | 704 | 1.71e-78 | 259 |
| Msa0208410 | AT5G17420.1 | 29.688 | 512 | 303 | 9 | 1 | 462 | 481 | 985 | 1.65e-70 | 242 |
| Msa0208410 | AT4G18780.1 | 28.791 | 521 | 307 | 6 | 1 | 462 | 427 | 942 | 2.42e-68 | 235 |
| Msa0208410 | AT5G64740.1 | 28.119 | 537 | 297 | 10 | 1 | 461 | 519 | 1042 | 9.87e-65 | 226 |
| Msa0208410 | AT2G32540.1 | 29.897 | 485 | 300 | 11 | 1 | 455 | 251 | 725 | 5.55e-58 | 204 |
| Msa0208410 | AT2G32530.1 | 30.165 | 484 | 300 | 11 | 1 | 455 | 251 | 725 | 1.61e-57 | 202 |
| Msa0208410 | AT2G32620.4 | 31.788 | 453 | 261 | 12 | 1 | 420 | 155 | 592 | 2.03e-53 | 190 |
| Msa0208410 | AT2G32620.1 | 31.788 | 453 | 261 | 12 | 1 | 420 | 251 | 688 | 7.09e-53 | 190 |
| Msa0208410 | AT4G15290.1 | 29.386 | 456 | 278 | 14 | 1 | 425 | 251 | 693 | 1.06e-51 | 186 |
| Msa0208410 | AT4G38190.1 | 27.525 | 505 | 318 | 12 | 1 | 462 | 569 | 1068 | 1.50e-51 | 188 |
| Msa0208410 | AT2G32610.1 | 31.398 | 465 | 259 | 14 | 1 | 424 | 252 | 697 | 2.79e-51 | 185 |
| Msa0208410 | AT4G15320.3 | 29.412 | 459 | 275 | 13 | 1 | 425 | 251 | 694 | 1.99e-50 | 183 |
| Msa0208410 | AT4G15320.5 | 29.412 | 459 | 275 | 13 | 1 | 425 | 251 | 694 | 2.05e-50 | 183 |
| Msa0208410 | AT4G15320.4 | 29.412 | 459 | 275 | 13 | 1 | 425 | 266 | 709 | 2.21e-50 | 183 |
| Msa0208410 | AT3G03050.1 | 26.054 | 522 | 321 | 12 | 1 | 462 | 591 | 1107 | 5.73e-49 | 180 |
| Msa0208410 | AT2G32620.3 | 35.692 | 325 | 183 | 7 | 1 | 308 | 251 | 566 | 6.53e-49 | 177 |
| Msa0208410 | AT1G02730.1 | 26.316 | 532 | 310 | 13 | 1 | 459 | 619 | 1141 | 3.96e-48 | 178 |
| Msa0208410 | AT5G16910.1 | 25.626 | 519 | 324 | 12 | 1 | 462 | 594 | 1107 | 1.73e-47 | 176 |
| Msa0208410 | AT1G32180.1 | 26.628 | 522 | 318 | 11 | 1 | 462 | 428 | 944 | 5.34e-47 | 174 |
| Msa0208410 | AT1G32180.2 | 26.628 | 522 | 318 | 11 | 1 | 462 | 428 | 944 | 5.34e-47 | 174 |
| Msa0208410 | AT2G32620.2 | 36.482 | 307 | 165 | 9 | 1 | 290 | 251 | 544 | 9.20e-47 | 170 |
| Msa0208410 | AT2G33100.2 | 24.713 | 522 | 328 | 10 | 1 | 461 | 482 | 999 | 1.47e-46 | 173 |
| Msa0208410 | AT2G33100.1 | 24.713 | 522 | 328 | 10 | 1 | 461 | 482 | 999 | 1.47e-46 | 173 |
| Msa0208410 | AT4G15320.2 | 28.495 | 372 | 190 | 10 | 1 | 308 | 251 | 610 | 1.31e-37 | 146 |
| Msa0208410 | AT4G15320.1 | 28.495 | 372 | 190 | 10 | 1 | 308 | 294 | 653 | 1.35e-37 | 146 |
| Msa0208410 | AT4G32410.1 | 27.439 | 328 | 220 | 7 | 143 | 462 | 722 | 1039 | 2.68e-33 | 134 |
| Msa0208410 | AT4G32410.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 518 | 641 | 3.10e-28 | 119 |
| Msa0208410 | AT5G09870.1 | 45.865 | 133 | 71 | 1 | 1 | 132 | 507 | 639 | 3.33e-33 | 134 |
| Msa0208410 | AT5G09870.1 | 26.140 | 329 | 220 | 7 | 143 | 461 | 712 | 1027 | 2.56e-30 | 125 |
| Msa0208410 | AT2G21770.1 | 26.140 | 329 | 220 | 7 | 143 | 461 | 730 | 1045 | 5.73e-32 | 130 |
| Msa0208410 | AT2G21770.1 | 43.609 | 133 | 74 | 1 | 1 | 132 | 525 | 657 | 7.42e-32 | 130 |
| Msa0208410 | AT4G39350.1 | 45.968 | 124 | 67 | 0 | 1 | 124 | 520 | 643 | 1.61e-31 | 129 |
| Msa0208410 | AT4G39350.1 | 27.439 | 328 | 217 | 6 | 143 | 461 | 726 | 1041 | 7.49e-31 | 127 |
| Msa0208410 | AT5G05170.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 502 | 625 | 1.44e-30 | 126 |
| Msa0208410 | AT5G05170.1 | 26.667 | 330 | 220 | 9 | 143 | 462 | 707 | 1024 | 6.46e-30 | 124 |
| Msa0208410 | AT5G44030.3 | 26.769 | 325 | 227 | 7 | 143 | 462 | 411 | 729 | 3.37e-30 | 124 |
| Msa0208410 | AT5G44030.3 | 41.129 | 124 | 73 | 0 | 1 | 124 | 179 | 302 | 1.83e-28 | 119 |
| Msa0208410 | AT5G44030.2 | 26.769 | 325 | 227 | 7 | 143 | 462 | 719 | 1037 | 6.20e-30 | 124 |
| Msa0208410 | AT5G44030.2 | 41.129 | 124 | 73 | 0 | 1 | 124 | 487 | 610 | 3.09e-28 | 119 |
| Msa0208410 | AT5G44030.1 | 26.769 | 325 | 227 | 7 | 143 | 462 | 690 | 1008 | 7.77e-30 | 124 |
| Msa0208410 | AT5G44030.1 | 41.129 | 124 | 73 | 0 | 1 | 124 | 458 | 581 | 3.44e-28 | 119 |
| Msa0208410 | AT2G25540.1 | 25.305 | 328 | 227 | 7 | 143 | 462 | 702 | 1019 | 7.80e-30 | 124 |
| Msa0208410 | AT2G25540.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 498 | 621 | 1.97e-28 | 119 |
Find 100 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTTCTTTGGTGGTTTA+TGG | 0.102162 | 2_1:-43475138 | Msa0208410:CDS |
| ATAAATATTGCTTGCTTCTT+TGG | 0.137497 | 2_1:-43475148 | Msa0208410:CDS |
| GCAACATCTTTAGAGGTTTC+AGG | 0.218423 | 2_1:+43478756 | None:intergenic |
| TTCTCTAAGTCGTCCTATTC+TGG | 0.230855 | 2_1:-43475050 | Msa0208410:CDS |
| GGATATAGGCCGTTGCAAAT+TGG | 0.258643 | 2_1:+43475849 | None:intergenic |
| CCTATGAGAGAAACACAAAT+TGG | 0.275541 | 2_1:-43477656 | Msa0208410:CDS |
| CCAATTTGTGTTTCTCTCAT+AGG | 0.285482 | 2_1:+43477656 | None:intergenic |
| AACAAAAGCAACATCTTTAG+AGG | 0.287887 | 2_1:+43478749 | None:intergenic |
| GCAACGGCCTATATCCTATA+TGG | 0.288599 | 2_1:-43475842 | Msa0208410:CDS |
| AGTTCAGATGACCACTTTAT+CGG | 0.331660 | 2_1:+43475971 | None:intergenic |
| AAATATAGCCCATTCACTTA+TGG | 0.354851 | 2_1:-43475929 | Msa0208410:CDS |
| CAAGGCAAAATTCACTTTAT+CGG | 0.355964 | 2_1:-43475272 | Msa0208410:CDS |
| AAACTTGAGAGTACCGTTAC+TGG | 0.362985 | 2_1:-43476097 | Msa0208410:CDS |
| GATATAGGCCGTTGCAAATT+GGG | 0.364576 | 2_1:+43475850 | None:intergenic |
| AGTGGGATTGTAAAATCAAT+TGG | 0.369244 | 2_1:-43475343 | Msa0208410:CDS |
| CTGGTGGCTCCTCGATGATT+TGG | 0.376584 | 2_1:-43475381 | Msa0208410:CDS |
| TTCGGAAGTCCAAACCAAAA+AGG | 0.385517 | 2_1:-43478478 | Msa0208410:intron |
| TCCTCAGATTTGCTTCTTGA+AGG | 0.386708 | 2_1:-43475813 | Msa0208410:CDS |
| TGATTACAGCTTAGAGTGTC+AGG | 0.390631 | 2_1:-43478876 | Msa0208410:intron |
| TACATTGAGGTAATTTCAAC+TGG | 0.390946 | 2_1:-43475400 | Msa0208410:CDS |
| CGAGATACATAAACAACTAA+TGG | 0.399852 | 2_1:+43479048 | None:intergenic |
| CTAAGGTTGTGAAACATTTG+AGG | 0.415344 | 2_1:+43478720 | None:intergenic |
| CTATGAGAGAAACACAAATT+GGG | 0.429297 | 2_1:-43477655 | Msa0208410:CDS |
| CTTGATGCTCTATACAACTT+TGG | 0.431278 | 2_1:-43477792 | Msa0208410:CDS |
| AAAGGTTAAACAATGAATAG+TGG | 0.432663 | 2_1:+43475892 | None:intergenic |
| AATATTGCTTGCTTCTTTGG+TGG | 0.448903 | 2_1:-43475145 | Msa0208410:CDS |
| CATATATGTCTTTCTTGCTA+AGG | 0.452770 | 2_1:+43478703 | None:intergenic |
| CATTACAGGTTACAGATCCT+TGG | 0.455030 | 2_1:-43475468 | Msa0208410:intron |
| GATATAATCCCCTCCAGAAT+AGG | 0.455085 | 2_1:+43475037 | None:intergenic |
| TCTGAGGAACGAATCCATAT+AGG | 0.464687 | 2_1:+43475828 | None:intergenic |
| AACGAATCCATATAGGATAT+AGG | 0.472750 | 2_1:+43475835 | None:intergenic |
| CTTGAAAGGCCATAAGTGAA+TGG | 0.474502 | 2_1:+43475920 | None:intergenic |
| CCTCAGATTTGCTTCTTGAA+GGG | 0.478015 | 2_1:-43475812 | Msa0208410:CDS |
| GAGAAAGTATATAGATAATG+AGG | 0.480925 | 2_1:+43475068 | None:intergenic |
| GGTCCAGGTCTAACCGGTAG+TGG | 0.491544 | 2_1:-43478529 | Msa0208410:CDS |
| TTGAAAGGCCATAAGTGAAT+GGG | 0.491625 | 2_1:+43475921 | None:intergenic |
| TAAGCTAAAGAAATATGAGC+AGG | 0.493122 | 2_1:-43475230 | Msa0208410:CDS |
| TTAAGAGGTCCAGGTCTAAC+CGG | 0.494171 | 2_1:-43478535 | Msa0208410:CDS |
| GTGGGATTGTAAAATCAATT+GGG | 0.497044 | 2_1:-43475342 | Msa0208410:CDS |
| ACTTATATAATTTCCACTAC+CGG | 0.497654 | 2_1:+43478516 | None:intergenic |
| AGTAGAAGTGCATTACTCTT+CGG | 0.499684 | 2_1:-43478496 | Msa0208410:CDS |
| TGTGCTTACCAAGTAACAAA+AGG | 0.502993 | 2_1:+43475874 | None:intergenic |
| AATCCCTCTTTCATGTCAGT+TGG | 0.503641 | 2_1:+43476001 | None:intergenic |
| TAAGGTTGTGAAACATTTGA+GGG | 0.508349 | 2_1:+43478721 | None:intergenic |
| ACAAAGTGGAAGGGAATGGA+TGG | 0.509961 | 2_1:-43478559 | Msa0208410:CDS |
| ATGGATGGATTAAGAGGTCC+AGG | 0.518984 | 2_1:-43478544 | Msa0208410:CDS |
| ATTGTGAGTAACACAATCAC+TGG | 0.521404 | 2_1:+43475169 | None:intergenic |
| TTTCTATTAGACAAAGTGGA+AGG | 0.522662 | 2_1:-43478569 | Msa0208410:intron |
| AATGTAATGATGAATTTGAC+TGG | 0.526323 | 2_1:+43475417 | None:intergenic |
| ATCTCCTCCATTGTAGAGGA+TGG | 0.527601 | 2_1:-43476072 | Msa0208410:CDS |
| GTGGCTCCTCGATGATTTGG+TGG | 0.533592 | 2_1:-43475378 | Msa0208410:CDS |
| CAATCTACGACAAGTACATA+AGG | 0.536818 | 2_1:+43478837 | None:intergenic |
| TTCTATTAGACAAAGTGGAA+GGG | 0.538234 | 2_1:-43478568 | Msa0208410:intron |
| AAGGTTAAACAATGAATAGT+GGG | 0.542914 | 2_1:+43475893 | None:intergenic |
| GGTGGAATGAACAAAGAAGT+GGG | 0.545717 | 2_1:-43475360 | Msa0208410:CDS |
| GTAATTTCTATTAGACAAAG+TGG | 0.553718 | 2_1:-43478573 | Msa0208410:intron |
| CTAAGTCGTCCTATTCTGGA+GGG | 0.554683 | 2_1:-43475046 | Msa0208410:CDS |
| TTAGACAAAGTGGAAGGGAA+TGG | 0.556621 | 2_1:-43478563 | Msa0208410:intron |
| TTGAATCTGTGAGGAACAGA+TGG | 0.556993 | 2_1:+43479015 | None:intergenic |
| GAATAGTGGGCAATCTTGAA+AGG | 0.559596 | 2_1:+43475906 | None:intergenic |
| TCAAATTCATCATTACATTG+AGG | 0.560781 | 2_1:-43475413 | Msa0208410:CDS |
| TTTCCACTACCGGTTAGACC+TGG | 0.561413 | 2_1:+43478526 | None:intergenic |
| TGATGGTGCAGCATTGCTCA+TGG | 0.561940 | 2_1:-43475194 | Msa0208410:CDS |
| TGCTCCAACTGACATGAAAG+AGG | 0.562817 | 2_1:-43476005 | Msa0208410:CDS |
| TTTACAAGAAGCATGTGAAG+TGG | 0.562845 | 2_1:-43477688 | Msa0208410:CDS |
| TCTAAGTCGTCCTATTCTGG+AGG | 0.571094 | 2_1:-43475047 | Msa0208410:CDS |
| TCTGTTCCTCACAGATTCAA+AGG | 0.573369 | 2_1:-43479012 | Msa0208410:CDS |
| GATTGATTCAACCGATAAAG+TGG | 0.574825 | 2_1:-43475982 | Msa0208410:CDS |
| ATTGAGGTAATTTCAACTGG+TGG | 0.581963 | 2_1:-43475397 | Msa0208410:CDS |
| GGCTATCTCCTCCATTGTAG+AGG | 0.585404 | 2_1:-43476076 | Msa0208410:CDS |
| TATCTATGAAGCGGAAGAGT+GGG | 0.586068 | 2_1:-43475018 | Msa0208410:CDS |
| TGGTGGAATGAACAAAGAAG+TGG | 0.587711 | 2_1:-43475361 | Msa0208410:CDS |
| TTGATCTCCATCCTCTACAA+TGG | 0.588017 | 2_1:+43476065 | None:intergenic |
| AGGAGGAGCTCTCAATACAT+TGG | 0.593942 | 2_1:-43478992 | Msa0208410:intron |
| ATTTGAACCATGAAAAGAAG+AGG | 0.595843 | 2_1:-43474987 | Msa0208410:three_prime_UTR |
| TAAGTCGTCCTATTCTGGAG+GGG | 0.606867 | 2_1:-43475045 | Msa0208410:CDS |
| GTGTCAGGGCTAATCAGCAA+TGG | 0.607231 | 2_1:-43478861 | Msa0208410:CDS |
| ATATCTATGAAGCGGAAGAG+TGG | 0.607521 | 2_1:-43475019 | Msa0208410:CDS |
| GGGAATACCTCTATATCCAA+AGG | 0.609329 | 2_1:-43475792 | Msa0208410:intron |
| AAGGGAATGGATGGATTAAG+AGG | 0.618466 | 2_1:-43478550 | Msa0208410:CDS |
| AAAATTCACTTTATCGGACA+AGG | 0.620711 | 2_1:-43475266 | Msa0208410:CDS |
| TATGAGAGAAACACAAATTG+GGG | 0.621432 | 2_1:-43477654 | Msa0208410:CDS |
| TTTGAACCATGAAAAGAAGA+GGG | 0.624361 | 2_1:-43474986 | Msa0208410:three_prime_UTR |
| ATCTCCATCCTCTACAATGG+AGG | 0.632406 | 2_1:+43476068 | None:intergenic |
| CCCTTCAAGAAGCAAATCTG+AGG | 0.636796 | 2_1:+43475812 | None:intergenic |
| AAGCTAAAGAAATATGAGCA+GGG | 0.640748 | 2_1:-43475229 | Msa0208410:CDS |
| GGAGCACATCCTAAGAAGCA+TGG | 0.641531 | 2_1:+43476022 | None:intergenic |
| AAACACAAATTGGGGTAACG+AGG | 0.644444 | 2_1:-43477646 | Msa0208410:intron |
| GCTCCAACTGACATGAAAGA+GGG | 0.649039 | 2_1:-43476004 | Msa0208410:CDS |
| ACTGTAAACACTATAAACCA+AGG | 0.655731 | 2_1:+43475451 | None:intergenic |
| GATTACAGCTTAGAGTGTCA+GGG | 0.657273 | 2_1:-43478875 | Msa0208410:intron |
| TATGGAGACTACTCAATGTG+AGG | 0.662737 | 2_1:-43475120 | Msa0208410:CDS |
| AAGCACAACCCAATTTGCAA+CGG | 0.664325 | 2_1:-43475858 | Msa0208410:CDS |
| ACATATATGATAGTCAGACT+AGG | 0.669035 | 2_1:-43478689 | Msa0208410:CDS |
| AGGGGATTATATCTATGAAG+CGG | 0.671490 | 2_1:-43475027 | Msa0208410:CDS |
| TTCATTCCACCAAATCATCG+AGG | 0.679487 | 2_1:+43475372 | None:intergenic |
| ATGGAGGAGATAGCCAGTAA+CGG | 0.694391 | 2_1:+43476084 | None:intergenic |
| GCTCCTCCTTTGAATCTGTG+AGG | 0.696490 | 2_1:+43479006 | None:intergenic |
| GTTCCTCACAGATTCAAAGG+AGG | 0.708338 | 2_1:-43479009 | Msa0208410:CDS |
| GAATCACTAAAAGCATTACG+TGG | 0.753334 | 2_1:-43477750 | Msa0208410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAAAGAAAATTAAG+AGG | + | chr2_1:43474990-43475009 | None:intergenic | 10.0% |
| !! | AATTTATTATATTATACACA+GGG | + | chr2_1:43475930-43475949 | None:intergenic | 10.0% |
| !! | AAATTTATTATATTATACAC+AGG | + | chr2_1:43475931-43475950 | None:intergenic | 10.0% |
| !! | CATAATTATATAATTTCATT+TGG | + | chr2_1:43476384-43476403 | None:intergenic | 10.0% |
| !!! | ATTAATTTATTTTACATTAC+AGG | - | chr2_1:43478442-43478461 | Msa0208410:intron | 10.0% |
| !!! | AGATAAATAGCTTAAAATTT+TGG | + | chr2_1:43475281-43475300 | None:intergenic | 15.0% |
| !! | ACTTTATTATATTATACACA+GGG | + | chr2_1:43475898-43475917 | None:intergenic | 15.0% |
| !! | ATTTATTATATTATACACAG+GGG | + | chr2_1:43475929-43475948 | None:intergenic | 15.0% |
| !!! | ATGTGAATCATAATTTTTTT+AGG | - | chr2_1:43476455-43476474 | Msa0208410:intron | 15.0% |
| !!! | TGTGAATCATAATTTTTTTA+GGG | - | chr2_1:43476456-43476475 | Msa0208410:intron | 15.0% |
| !!! | TAGAGATTTTTTTTTTTTGA+AGG | - | chr2_1:43476713-43476732 | Msa0208410:intron | 15.0% |
| !! | AAAAATTTATGGCTAAATTT+AGG | - | chr2_1:43476774-43476793 | Msa0208410:intron | 15.0% |
| !! | AAAATTTATGGCTAAATTTA+GGG | - | chr2_1:43476775-43476794 | Msa0208410:intron | 15.0% |
| !! | AATCTATTGTAAATAAAACT+AGG | - | chr2_1:43476946-43476965 | Msa0208410:intron | 15.0% |
| !! | ATCTATTGTAAATAAAACTA+GGG | - | chr2_1:43476947-43476966 | Msa0208410:intron | 15.0% |
| !! | GTAATTAGTTAGTATTATTA+AGG | - | chr2_1:43477282-43477301 | Msa0208410:intron | 15.0% |
| !! | AATATCAGTCAAATTAATAA+CGG | + | chr2_1:43477781-43477800 | None:intergenic | 15.0% |
| !! | GAATTCTAACAAATATTCTT+AGG | - | chr2_1:43475498-43475517 | Msa0208410:intron | 20.0% |
| !!! | TATTCTTAGGATATTGTTTT+AGG | - | chr2_1:43475511-43475530 | Msa0208410:intron | 20.0% |
| !!! | AAAAACTATTAGTCTTGTTT+TGG | + | chr2_1:43475810-43475829 | None:intergenic | 20.0% |
| !! | CTTTATTATATTATACACAG+GGG | + | chr2_1:43475897-43475916 | None:intergenic | 20.0% |
| !! | CACTTTATTATATTATACAC+AGG | + | chr2_1:43475899-43475918 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATTTATAATGGC+AGG | - | chr2_1:43476099-43476118 | Msa0208410:CDS | 20.0% |
| !!! | TTTTTGAATTTATAATGGCA+GGG | - | chr2_1:43476100-43476119 | Msa0208410:CDS | 20.0% |
| !! | AATTTAAATTCACACCTTAT+GGG | + | chr2_1:43476493-43476512 | None:intergenic | 20.0% |
| !! | AAATTTAAATTCACACCTTA+TGG | + | chr2_1:43476494-43476513 | None:intergenic | 20.0% |
| !! | AGTAAAATTAAAGAGATCAA+AGG | + | chr2_1:43476531-43476550 | None:intergenic | 20.0% |
| !! | TAACAAAATATTAAAGCTGA+TGG | + | chr2_1:43476599-43476618 | None:intergenic | 20.0% |
| !! | TTAAATTTATGGCTAGAATT+TGG | - | chr2_1:43476659-43476678 | Msa0208410:intron | 20.0% |
| !! | CACAAGGAAAAAAAAATTTA+TGG | - | chr2_1:43476763-43476782 | Msa0208410:intron | 20.0% |
| !! | TAAAATAAATCAATAACAGC+AGG | - | chr2_1:43477060-43477079 | Msa0208410:intron | 20.0% |
| !! | CTATAAATTTATCACATTGA+TGG | + | chr2_1:43477258-43477277 | None:intergenic | 20.0% |
| !! | CATCAATGTGATAAATTTAT+AGG | - | chr2_1:43477256-43477275 | Msa0208410:intron | 20.0% |
| !! | AATGTGATAAATTTATAGGT+GGG | - | chr2_1:43477260-43477279 | Msa0208410:intron | 20.0% |
| !! | ATAATTGTCTTCATCAAATA+AGG | - | chr2_1:43477332-43477351 | Msa0208410:intron | 20.0% |
| !! | TAATTGTCTTCATCAAATAA+GGG | - | chr2_1:43477333-43477352 | Msa0208410:intron | 20.0% |
| !! | ATATCAGTCAAATTAATAAC+GGG | + | chr2_1:43477780-43477799 | None:intergenic | 20.0% |
| !!! | ATTTATCCATATTTTACCTT+TGG | + | chr2_1:43478151-43478170 | None:intergenic | 20.0% |
| !!! | AAAAACTTATGAACACATTT+TGG | - | chr2_1:43478216-43478235 | Msa0208410:intron | 20.0% |
| !! | AATTAATAGAAGTAACATGT+TGG | + | chr2_1:43478429-43478448 | None:intergenic | 20.0% |
| !! | AAACAACGAAAAAAAAGTTT+GGG | - | chr2_1:43478624-43478643 | Msa0208410:intron | 20.0% |
| !!! | AGTTTCAATTGTTTTTAAAG+TGG | - | chr2_1:43479050-43479069 | Msa0208410:CDS | 20.0% |
| ! | GTAATTTCTATTAGACAAAG+TGG | - | chr2_1:43475351-43475370 | Msa0208410:CDS | 25.0% |
| ! | ACTTATATAATTTCCACTAC+CGG | + | chr2_1:43475411-43475430 | None:intergenic | 25.0% |
| !!! | TAATTTGTACCTTTTTGGTT+TGG | + | chr2_1:43475458-43475477 | None:intergenic | 25.0% |
| !!! | TGTAGTAATTTGTACCTTTT+TGG | + | chr2_1:43475463-43475482 | None:intergenic | 25.0% |
| ! | AATGAATGTCTTAAGATCAT+TGG | + | chr2_1:43475621-43475640 | None:intergenic | 25.0% |
| !!! | AAGACTAATAGTTTTTTGTC+CGG | - | chr2_1:43475814-43475833 | Msa0208410:CDS | 25.0% |
| !! | TTTTGAATTTATAATGGCAG+GGG | - | chr2_1:43476101-43476120 | Msa0208410:CDS | 25.0% |
| ! | TTGTAAATAAAACTAGGGTT+AGG | - | chr2_1:43476952-43476971 | Msa0208410:intron | 25.0% |
| ! | CTTCTACCAAAAATGATTAT+GGG | + | chr2_1:43476982-43477001 | None:intergenic | 25.0% |
| ! | TCTTCTACCAAAAATGATTA+TGG | + | chr2_1:43476983-43477002 | None:intergenic | 25.0% |
| !! | TGGAATTGGGTTTAAATTTT+TGG | + | chr2_1:43477100-43477119 | None:intergenic | 25.0% |
| ! | CAATGTGATAAATTTATAGG+TGG | - | chr2_1:43477259-43477278 | Msa0208410:intron | 25.0% |
| ! | TGAAGACAATTATAATGAGA+CGG | + | chr2_1:43477325-43477344 | None:intergenic | 25.0% |
| ! | ACGTGAAAACTAAAATGAAA+CGG | - | chr2_1:43477426-43477445 | Msa0208410:intron | 25.0% |
| ! | AATGAAAGTTTAATGTGAGT+TGG | + | chr2_1:43477730-43477749 | None:intergenic | 25.0% |
| !! | TTAATTTGACTGATATTCAC+AGG | - | chr2_1:43477784-43477803 | Msa0208410:CDS | 25.0% |
| ! | AAGGTTAAACAATGAATAGT+GGG | + | chr2_1:43478034-43478053 | None:intergenic | 25.0% |
| ! | AAAGGTTAAACAATGAATAG+TGG | + | chr2_1:43478035-43478054 | None:intergenic | 25.0% |
| !! | TTGTTTAACCTTTTGTTACT+TGG | - | chr2_1:43478042-43478061 | Msa0208410:intron | 25.0% |
| !! | TATTTTACCTTTGGATATAG+AGG | + | chr2_1:43478142-43478161 | None:intergenic | 25.0% |
| ! | CTATATCCAAAGGTAAAATA+TGG | - | chr2_1:43478142-43478161 | Msa0208410:intron | 25.0% |
| ! | TCAAATAAGTCAATTCTAAC+AGG | - | chr2_1:43478367-43478386 | Msa0208410:intron | 25.0% |
| ! | AATGTAATGATGAATTTGAC+TGG | + | chr2_1:43478510-43478529 | None:intergenic | 25.0% |
| ! | TCAAATTCATCATTACATTG+AGG | - | chr2_1:43478511-43478530 | Msa0208410:CDS | 25.0% |
| ! | GAAACAACGAAAAAAAAGTT+TGG | - | chr2_1:43478623-43478642 | Msa0208410:intron | 25.0% |
| ! | ATAAATATTGCTTGCTTCTT+TGG | - | chr2_1:43478776-43478795 | Msa0208410:CDS | 25.0% |
| !!! | AGGAATTTTGATGAAATGTT+TGG | - | chr2_1:43478824-43478843 | Msa0208410:CDS | 25.0% |
| !! | GAGAAAGTATATAGATAATG+AGG | + | chr2_1:43478859-43478878 | None:intergenic | 25.0% |
| CGAGATACATAAACAACTAA+TGG | + | chr2_1:43474879-43474898 | None:intergenic | 30.0% | |
| ! | AAAAAAGCACATGGATTGTT+TGG | + | chr2_1:43475142-43475161 | None:intergenic | 30.0% |
| AACAAAAGCAACATCTTTAG+AGG | + | chr2_1:43475178-43475197 | None:intergenic | 30.0% | |
| TAAGGTTGTGAAACATTTGA+GGG | + | chr2_1:43475206-43475225 | None:intergenic | 30.0% | |
| CATATATGTCTTTCTTGCTA+AGG | + | chr2_1:43475224-43475243 | None:intergenic | 30.0% | |
| ACATATATGATAGTCAGACT+AGG | - | chr2_1:43475235-43475254 | Msa0208410:CDS | 30.0% | |
| TTTCTATTAGACAAAGTGGA+AGG | - | chr2_1:43475355-43475374 | Msa0208410:CDS | 30.0% | |
| TTCTATTAGACAAAGTGGAA+GGG | - | chr2_1:43475356-43475375 | Msa0208410:CDS | 30.0% | |
| TTAGAATTCTCGAAACTGTA+AGG | + | chr2_1:43475487-43475506 | None:intergenic | 30.0% | |
| !!! | AACTATTAGTCTTGTTTTGG+TGG | + | chr2_1:43475807-43475826 | None:intergenic | 30.0% |
| !!! | AGACTAATAGTTTTTTGTCC+GGG | - | chr2_1:43475815-43475834 | Msa0208410:CDS | 30.0% |
| TAGAGATTCTATTTCAAACC+CGG | + | chr2_1:43475836-43475855 | None:intergenic | 30.0% | |
| ATTTATGTTACCTTCACCAA+TGG | - | chr2_1:43475993-43476012 | Msa0208410:CDS | 30.0% | |
| ! | ATTGATTTCACCATATCCAT+TGG | + | chr2_1:43476012-43476031 | None:intergenic | 30.0% |
| CTATGAGAGAAACACAAATT+GGG | - | chr2_1:43476269-43476288 | Msa0208410:intron | 30.0% | |
| TATGAGAGAAACACAAATTG+GGG | - | chr2_1:43476270-43476289 | Msa0208410:intron | 30.0% | |
| CAATCCATTGAAAATTGAAC+GGG | + | chr2_1:43476849-43476868 | None:intergenic | 30.0% | |
| CCAATCCATTGAAAATTGAA+CGG | + | chr2_1:43476850-43476869 | None:intergenic | 30.0% | |
| !! | CGTTCAATTTTCAATGGATT+GGG | - | chr2_1:43476848-43476867 | Msa0208410:intron | 30.0% |
| TAAATAAAACTAGGGTTAGG+TGG | - | chr2_1:43476955-43476974 | Msa0208410:intron | 30.0% | |
| AAATAAAACTAGGGTTAGGT+GGG | - | chr2_1:43476956-43476975 | Msa0208410:intron | 30.0% | |
| ! | TTTTGGTAGAAGATCATCAT+AGG | - | chr2_1:43476990-43477009 | Msa0208410:intron | 30.0% |
| ATAAATCAATAACAGCAGGT+CGG | - | chr2_1:43477064-43477083 | Msa0208410:intron | 30.0% | |
| !! | CAAAGTTTAGTTCTGGAATT+GGG | + | chr2_1:43477113-43477132 | None:intergenic | 30.0% |
| TGATGGTAAAATTTAGCTAG+CGG | + | chr2_1:43477241-43477260 | None:intergenic | 30.0% | |
| GAAGACAATTATAATGAGAC+GGG | + | chr2_1:43477324-43477343 | None:intergenic | 30.0% | |
| TTCAAATGAGTCATCTATTG+CGG | + | chr2_1:43477474-43477493 | None:intergenic | 30.0% | |
| ! | ATGCATTGATATGCGTAATA+AGG | - | chr2_1:43477654-43477673 | Msa0208410:CDS | 30.0% |
| TTGTGTCAAGTATTATGAGA+TGG | - | chr2_1:43477681-43477700 | Msa0208410:CDS | 30.0% | |
| !! | GTTTAATGTGAGTTGGATTT+TGG | + | chr2_1:43477723-43477742 | None:intergenic | 30.0% |
| AAATATAGCCCATTCACTTA+TGG | - | chr2_1:43477995-43478014 | Msa0208410:intron | 30.0% | |
| AACGAATCCATATAGGATAT+AGG | + | chr2_1:43478092-43478111 | None:intergenic | 30.0% | |
| !! | ACTTATGAACACATTTTGGT+TGG | - | chr2_1:43478220-43478239 | Msa0208410:intron | 30.0% |
| !! | TTTGAAATGTGCTCGTTTTA+AGG | - | chr2_1:43478265-43478284 | Msa0208410:intron | 30.0% |
| ATAAGTCAATTCTAACAGGA+TGG | - | chr2_1:43478371-43478390 | Msa0208410:intron | 30.0% | |
| ACTGTAAACACTATAAACCA+AGG | + | chr2_1:43478476-43478495 | None:intergenic | 30.0% | |
| TACATTGAGGTAATTTCAAC+TGG | - | chr2_1:43478524-43478543 | Msa0208410:CDS | 30.0% | |
| AGTGGGATTGTAAAATCAAT+TGG | - | chr2_1:43478581-43478600 | Msa0208410:intron | 30.0% | |
| GTGGGATTGTAAAATCAATT+GGG | - | chr2_1:43478582-43478601 | Msa0208410:intron | 30.0% | |
| !! | AAAAAAGTTTGGGTTGAACA+AGG | - | chr2_1:43478634-43478653 | Msa0208410:intron | 30.0% |
| CAAGGCAAAATTCACTTTAT+CGG | - | chr2_1:43478652-43478671 | Msa0208410:intron | 30.0% | |
| AAAATTCACTTTATCGGACA+AGG | - | chr2_1:43478658-43478677 | Msa0208410:intron | 30.0% | |
| TAAGCTAAAGAAATATGAGC+AGG | - | chr2_1:43478694-43478713 | Msa0208410:CDS | 30.0% | |
| AAGCTAAAGAAATATGAGCA+GGG | - | chr2_1:43478695-43478714 | Msa0208410:CDS | 30.0% | |
| !! | CAGGGTAAGTTTAATTTTGA+TGG | - | chr2_1:43478713-43478732 | Msa0208410:CDS | 30.0% |
| ATTTGAACCATGAAAAGAAG+AGG | - | chr2_1:43478937-43478956 | Msa0208410:intron | 30.0% | |
| TTTGAACCATGAAAAGAAGA+GGG | - | chr2_1:43478938-43478957 | Msa0208410:intron | 30.0% | |
| CAATCTACGACAAGTACATA+AGG | + | chr2_1:43475090-43475109 | None:intergenic | 35.0% | |
| ! | AGGATCAAGAAAAAAGCACA+TGG | + | chr2_1:43475151-43475170 | None:intergenic | 35.0% |
| CTAAGGTTGTGAAACATTTG+AGG | + | chr2_1:43475207-43475226 | None:intergenic | 35.0% | |
| ! | AGTAGAAGTGCATTACTCTT+CGG | - | chr2_1:43475428-43475447 | Msa0208410:CDS | 35.0% |
| ! | TAAGCTTATCTCAGTTGGTA+GGG | - | chr2_1:43475744-43475763 | Msa0208410:intron | 35.0% |
| GACAATGCATAATATATGCG+AGG | - | chr2_1:43475766-43475785 | Msa0208410:intron | 35.0% | |
| !!! | TATTAGTCTTGTTTTGGTGG+TGG | + | chr2_1:43475804-43475823 | None:intergenic | 35.0% |
| GGTAAGTAACACAATTGGTT+TGG | + | chr2_1:43475876-43475895 | None:intergenic | 35.0% | |
| CTTGATGCTCTATACAACTT+TGG | - | chr2_1:43476132-43476151 | Msa0208410:intron | 35.0% | |
| !! | GAATCACTAAAAGCATTACG+TGG | - | chr2_1:43476174-43476193 | Msa0208410:intron | 35.0% |
| ! | TTTACAAGAAGCATGTGAAG+TGG | - | chr2_1:43476236-43476255 | Msa0208410:intron | 35.0% |
| CCAATTTGTGTTTCTCTCAT+AGG | + | chr2_1:43476271-43476290 | None:intergenic | 35.0% | |
| CCTATGAGAGAAACACAAAT+TGG | - | chr2_1:43476268-43476287 | Msa0208410:intron | 35.0% | |
| ! | GCTAAATTTAGGGCTATACA+CGG | - | chr2_1:43476785-43476804 | Msa0208410:intron | 35.0% |
| ! | CTAAATTTAGGGCTATACAC+GGG | - | chr2_1:43476786-43476805 | Msa0208410:intron | 35.0% |
| ! | CATTGAAAATTGAACGGGTT+GGG | + | chr2_1:43476844-43476863 | None:intergenic | 35.0% |
| ! | CCGTTCAATTTTCAATGGAT+TGG | - | chr2_1:43476847-43476866 | Msa0208410:intron | 35.0% |
| !! | GGTTTAAATTTTTGGACCCA+TGG | + | chr2_1:43477092-43477111 | None:intergenic | 35.0% |
| !! | GCAAAGTTTAGTTCTGGAAT+TGG | + | chr2_1:43477114-43477133 | None:intergenic | 35.0% |
| ATTCCAGAACTAAACTTTGC+TGG | - | chr2_1:43477114-43477133 | Msa0208410:intron | 35.0% | |
| CTTGGGTTCAGATAATTAGT+GGG | - | chr2_1:43477162-43477181 | Msa0208410:intron | 35.0% | |
| !! | GTTCAGATAATTAGTGGGTT+GGG | - | chr2_1:43477167-43477186 | Msa0208410:intron | 35.0% |
| ! | TAAGTGCAAGTCGATTTACA+CGG | + | chr2_1:43477206-43477225 | None:intergenic | 35.0% |
| TCAAATGAGTCATCTATTGC+GGG | + | chr2_1:43477473-43477492 | None:intergenic | 35.0% | |
| TGTCAAGTATTATGAGATGG+TGG | - | chr2_1:43477684-43477703 | Msa0208410:CDS | 35.0% | |
| TTTGACTGATATTCACAGGT+TGG | - | chr2_1:43477788-43477807 | Msa0208410:CDS | 35.0% | |
| !! | CTAAGAAGCATGGTCTTTTT+GGG | + | chr2_1:43477895-43477914 | None:intergenic | 35.0% |
| ! | GATTGATTCAACCGATAAAG+TGG | - | chr2_1:43477942-43477961 | Msa0208410:intron | 35.0% |
| AGTTCAGATGACCACTTTAT+CGG | + | chr2_1:43477956-43477975 | None:intergenic | 35.0% | |
| TTGAAAGGCCATAAGTGAAT+GGG | + | chr2_1:43478006-43478025 | None:intergenic | 35.0% | |
| TGTGCTTACCAAGTAACAAA+AGG | + | chr2_1:43478053-43478072 | None:intergenic | 35.0% | |
| !!! | TGAACACATTTTGGTTGGTT+TGG | - | chr2_1:43478225-43478244 | Msa0208410:intron | 35.0% |
| ATTGAGGTAATTTCAACTGG+TGG | - | chr2_1:43478527-43478546 | Msa0208410:CDS | 35.0% | |
| ATTGTGAGTAACACAATCAC+TGG | + | chr2_1:43478758-43478777 | None:intergenic | 35.0% | |
| AATATTGCTTGCTTCTTTGG+TGG | - | chr2_1:43478779-43478798 | Msa0208410:CDS | 35.0% | |
| AGGGGATTATATCTATGAAG+CGG | - | chr2_1:43478897-43478916 | Msa0208410:intron | 35.0% | |
| ! | ACATATCCCTCTTCTTTTCA+TGG | + | chr2_1:43478947-43478966 | None:intergenic | 35.0% |
| TTGAATCTGTGAGGAACAGA+TGG | + | chr2_1:43474912-43474931 | None:intergenic | 40.0% | |
| TCTGTTCCTCACAGATTCAA+AGG | - | chr2_1:43474912-43474931 | Msa0208410:three_prime_UTR | 40.0% | |
| ! | TGATTACAGCTTAGAGTGTC+AGG | - | chr2_1:43475048-43475067 | Msa0208410:CDS | 40.0% |
| ! | GATTACAGCTTAGAGTGTCA+GGG | - | chr2_1:43475049-43475068 | Msa0208410:CDS | 40.0% |
| ! | GCAACATCTTTAGAGGTTTC+AGG | + | chr2_1:43475171-43475190 | None:intergenic | 40.0% |
| !! | TCAGACTAGGACTGCTTTTA+CGG | - | chr2_1:43475248-43475267 | Msa0208410:CDS | 40.0% |
| TTAGACAAAGTGGAAGGGAA+TGG | - | chr2_1:43475361-43475380 | Msa0208410:CDS | 40.0% | |
| !! | AAGGGAATGGATGGATTAAG+AGG | - | chr2_1:43475374-43475393 | Msa0208410:CDS | 40.0% |
| TTCGGAAGTCCAAACCAAAA+AGG | - | chr2_1:43475446-43475465 | Msa0208410:CDS | 40.0% | |
| CTTCGTAAGCTTATCTCAGT+TGG | - | chr2_1:43475739-43475758 | Msa0208410:intron | 40.0% | |
| GTAAGCTTATCTCAGTTGGT+AGG | - | chr2_1:43475743-43475762 | Msa0208410:intron | 40.0% | |
| ACAGGGGTAAGTAACACAAT+TGG | + | chr2_1:43475881-43475900 | None:intergenic | 40.0% | |
| GTTACCTTCACCAATGGATA+TGG | - | chr2_1:43475999-43476018 | Msa0208410:CDS | 40.0% | |
| TTCACCATATCCATTGGTGA+AGG | + | chr2_1:43476006-43476025 | None:intergenic | 40.0% | |
| TGGTGAAATCAATCGTAGAG+AGG | - | chr2_1:43476019-43476038 | Msa0208410:CDS | 40.0% | |
| AAACACAAATTGGGGTAACG+AGG | - | chr2_1:43476278-43476297 | Msa0208410:intron | 40.0% | |
| TTTCATGCGCCAATGAAAGT+TGG | - | chr2_1:43476418-43476437 | Msa0208410:intron | 40.0% | |
| GATATGCGTCAACAAACACA+AGG | - | chr2_1:43476747-43476766 | Msa0208410:intron | 40.0% | |
| !! | AACGGGTTGGGTAATTGATT+TGG | + | chr2_1:43476832-43476851 | None:intergenic | 40.0% |
| CCATTGAAAATTGAACGGGT+TGG | + | chr2_1:43476845-43476864 | None:intergenic | 40.0% | |
| ! | CCAACCCGTTCAATTTTCAA+TGG | - | chr2_1:43476842-43476861 | Msa0208410:intron | 40.0% |
| ! | CAACCAGCAAAGTTTAGTTC+TGG | + | chr2_1:43477120-43477139 | None:intergenic | 40.0% |
| AGATTGGATCTGCAAATGCT+TGG | - | chr2_1:43477144-43477163 | Msa0208410:intron | 40.0% | |
| GATTGGATCTGCAAATGCTT+GGG | - | chr2_1:43477145-43477164 | Msa0208410:intron | 40.0% | |
| GCTTGGGTTCAGATAATTAG+TGG | - | chr2_1:43477161-43477180 | Msa0208410:intron | 40.0% | |
| ! | GGTTCAGATAATTAGTGGGT+TGG | - | chr2_1:43477166-43477185 | Msa0208410:intron | 40.0% |
| AATGAGACGGGTGGAATATA+GGG | + | chr2_1:43477312-43477331 | None:intergenic | 40.0% | |
| TAATGAGACGGGTGGAATAT+AGG | + | chr2_1:43477313-43477332 | None:intergenic | 40.0% | |
| GACAATTATAATGAGACGGG+TGG | + | chr2_1:43477321-43477340 | None:intergenic | 40.0% | |
| !! | AAACTTGAGAGTACCGTTAC+TGG | - | chr2_1:43477827-43477846 | Msa0208410:intron | 40.0% |
| TTGATCTCCATCCTCTACAA+TGG | + | chr2_1:43477862-43477881 | None:intergenic | 40.0% | |
| !! | CCTAAGAAGCATGGTCTTTT+TGG | + | chr2_1:43477896-43477915 | None:intergenic | 40.0% |
| CCAAAAAGACCATGCTTCTT+AGG | - | chr2_1:43477893-43477912 | Msa0208410:intron | 40.0% | |
| AATCCCTCTTTCATGTCAGT+TGG | + | chr2_1:43477926-43477945 | None:intergenic | 40.0% | |
| CTTGAAAGGCCATAAGTGAA+TGG | + | chr2_1:43478007-43478026 | None:intergenic | 40.0% | |
| !! | GAATAGTGGGCAATCTTGAA+AGG | + | chr2_1:43478021-43478040 | None:intergenic | 40.0% |
| AAGCACAACCCAATTTGCAA+CGG | - | chr2_1:43478066-43478085 | Msa0208410:intron | 40.0% | |
| GATATAGGCCGTTGCAAATT+GGG | + | chr2_1:43478077-43478096 | None:intergenic | 40.0% | |
| TCTGAGGAACGAATCCATAT+AGG | + | chr2_1:43478099-43478118 | None:intergenic | 40.0% | |
| ! | TCCTCAGATTTGCTTCTTGA+AGG | - | chr2_1:43478111-43478130 | Msa0208410:intron | 40.0% |
| ! | CCTCAGATTTGCTTCTTGAA+GGG | - | chr2_1:43478112-43478131 | Msa0208410:intron | 40.0% |
| GGGAATACCTCTATATCCAA+AGG | - | chr2_1:43478132-43478151 | Msa0208410:intron | 40.0% | |
| !!! | ACACATTTTGGTTGGTTTGG+TGG | - | chr2_1:43478228-43478247 | Msa0208410:intron | 40.0% |
| CATTACAGGTTACAGATCCT+TGG | - | chr2_1:43478456-43478475 | Msa0208410:intron | 40.0% | |
| TTCATTCCACCAAATCATCG+AGG | + | chr2_1:43478555-43478574 | None:intergenic | 40.0% | |
| TGGTGGAATGAACAAAGAAG+TGG | - | chr2_1:43478563-43478582 | Msa0208410:intron | 40.0% | |
| GGTGGAATGAACAAAGAAGT+GGG | - | chr2_1:43478564-43478583 | Msa0208410:intron | 40.0% | |
| ! | CTTGCTTCTTTGGTGGTTTA+TGG | - | chr2_1:43478786-43478805 | Msa0208410:CDS | 40.0% |
| TATGGAGACTACTCAATGTG+AGG | - | chr2_1:43478804-43478823 | Msa0208410:CDS | 40.0% | |
| TTCTCTAAGTCGTCCTATTC+TGG | - | chr2_1:43478874-43478893 | Msa0208410:intron | 40.0% | |
| GATATAATCCCCTCCAGAAT+AGG | + | chr2_1:43478890-43478909 | None:intergenic | 40.0% | |
| ATATCTATGAAGCGGAAGAG+TGG | - | chr2_1:43478905-43478924 | Msa0208410:intron | 40.0% | |
| TATCTATGAAGCGGAAGAGT+GGG | - | chr2_1:43478906-43478925 | Msa0208410:intron | 40.0% | |
| GTTCCTCACAGATTCAAAGG+AGG | - | chr2_1:43474915-43474934 | Msa0208410:three_prime_UTR | 45.0% | |
| AGGAGGAGCTCTCAATACAT+TGG | - | chr2_1:43474932-43474951 | Msa0208410:three_prime_UTR | 45.0% | |
| ACAAAGTGGAAGGGAATGGA+TGG | - | chr2_1:43475365-43475384 | Msa0208410:CDS | 45.0% | |
| !! | ATGGATGGATTAAGAGGTCC+AGG | - | chr2_1:43475380-43475399 | Msa0208410:CDS | 45.0% |
| TTAAGAGGTCCAGGTCTAAC+CGG | - | chr2_1:43475389-43475408 | Msa0208410:CDS | 45.0% | |
| TATATGCGAGGTTCGAACCT+CGG | - | chr2_1:43475778-43475797 | Msa0208410:intron | 45.0% | |
| ! | TGCGCCAATGAAAGTTGGTT+CGG | - | chr2_1:43476423-43476442 | Msa0208410:intron | 45.0% |
| CCATCCGAACCAACTTTCAT+TGG | + | chr2_1:43476430-43476449 | None:intergenic | 45.0% | |
| !! | CCAATGAAAGTTGGTTCGGA+TGG | - | chr2_1:43476427-43476446 | Msa0208410:intron | 45.0% |
| GGGAGTGAATCATACCCATA+AGG | - | chr2_1:43476476-43476495 | Msa0208410:intron | 45.0% | |
| ! | ATTTAGGGCTATACACGGGT+TGG | - | chr2_1:43476790-43476809 | Msa0208410:intron | 45.0% |
| ! | TTTAGGGCTATACACGGGTT+GGG | - | chr2_1:43476791-43476810 | Msa0208410:intron | 45.0% |
| ! | GGTGGGCCCATAATCATTTT+TGG | - | chr2_1:43476973-43476992 | Msa0208410:intron | 45.0% |
| ATGAGACGGGTGGAATATAG+GGG | + | chr2_1:43477311-43477330 | None:intergenic | 45.0% | |
| ATGAGTCATCTATTGCGGGA+CGG | + | chr2_1:43477469-43477488 | None:intergenic | 45.0% | |
| ATGGAGGAGATAGCCAGTAA+CGG | + | chr2_1:43477843-43477862 | None:intergenic | 45.0% | |
| ATCTCCTCCATTGTAGAGGA+TGG | - | chr2_1:43477852-43477871 | Msa0208410:intron | 45.0% | |
| ATCTCCATCCTCTACAATGG+AGG | + | chr2_1:43477859-43477878 | None:intergenic | 45.0% | |
| TGCTCCAACTGACATGAAAG+AGG | - | chr2_1:43477919-43477938 | Msa0208410:intron | 45.0% | |
| GCTCCAACTGACATGAAAGA+GGG | - | chr2_1:43477920-43477939 | Msa0208410:intron | 45.0% | |
| GGATATAGGCCGTTGCAAAT+TGG | + | chr2_1:43478078-43478097 | None:intergenic | 45.0% | |
| GCAACGGCCTATATCCTATA+TGG | - | chr2_1:43478082-43478101 | Msa0208410:intron | 45.0% | |
| CCCTTCAAGAAGCAAATCTG+AGG | + | chr2_1:43478115-43478134 | None:intergenic | 45.0% | |
| TCTAAGTCGTCCTATTCTGG+AGG | - | chr2_1:43478877-43478896 | Msa0208410:intron | 45.0% | |
| CTAAGTCGTCCTATTCTGGA+GGG | - | chr2_1:43478878-43478897 | Msa0208410:intron | 45.0% | |
| ! | TAAGTCGTCCTATTCTGGAG+GGG | - | chr2_1:43478879-43478898 | Msa0208410:intron | 45.0% |
| !!! | TTTTTTTTTTGAATTTATAA+TGG | - | chr2_1:43476095-43476114 | Msa0208410:CDS | 5.0% |
| !! | TTAAATTATAGTTAAATTTA+TGG | - | chr2_1:43476648-43476667 | Msa0208410:intron | 5.0% |
| !!! | TAATAATTTTATTAAAATGT+GGG | + | chr2_1:43476886-43476905 | None:intergenic | 5.0% |
| !!! | ATAATAATTTTATTAAAATG+TGG | + | chr2_1:43476887-43476906 | None:intergenic | 5.0% |
| !!! | TAAATTTTTAAAAAAAATTG+TGG | - | chr2_1:43476912-43476931 | Msa0208410:intron | 5.0% |
| GCTCCTCCTTTGAATCTGTG+AGG | + | chr2_1:43474921-43474940 | None:intergenic | 50.0% | |
| GTGTCAGGGCTAATCAGCAA+TGG | - | chr2_1:43475063-43475082 | Msa0208410:CDS | 50.0% | |
| ! | TTTCCACTACCGGTTAGACC+TGG | + | chr2_1:43475401-43475420 | None:intergenic | 50.0% |
| !! | GGGTTGGGTTGGAACAAGTT+TGG | - | chr2_1:43476806-43476825 | Msa0208410:intron | 50.0% |
| ATAACAGCAGGTCGGATCCA+TGG | - | chr2_1:43477072-43477091 | Msa0208410:intron | 50.0% | |
| TAACAGCAGGTCGGATCCAT+GGG | - | chr2_1:43477073-43477092 | Msa0208410:intron | 50.0% | |
| ! | CTTTGCTGGTTGCAGCAGAT+TGG | - | chr2_1:43477128-43477147 | Msa0208410:intron | 50.0% |
| GGCTATCTCCTCCATTGTAG+AGG | - | chr2_1:43477848-43477867 | Msa0208410:intron | 50.0% | |
| GGAGCACATCCTAAGAAGCA+TGG | + | chr2_1:43477905-43477924 | None:intergenic | 50.0% | |
| ! | TGATGGTGCAGCATTGCTCA+TGG | - | chr2_1:43478730-43478749 | Msa0208410:CDS | 50.0% |
| !!! | TCTTGTTTTGGTGGTGGCCG+AGG | + | chr2_1:43475798-43475817 | None:intergenic | 55.0% |
| GTCATCTATTGCGGGACGGA+GGG | + | chr2_1:43477465-43477484 | None:intergenic | 55.0% | |
| AGTCATCTATTGCGGGACGG+AGG | + | chr2_1:43477466-43477485 | None:intergenic | 55.0% | |
| CTGGTGGCTCCTCGATGATT+TGG | - | chr2_1:43478543-43478562 | Msa0208410:CDS | 55.0% | |
| ! | GTGGCTCCTCGATGATTTGG+TGG | - | chr2_1:43478546-43478565 | Msa0208410:CDS | 55.0% |
| GGTCCAGGTCTAACCGGTAG+TGG | - | chr2_1:43475395-43475414 | Msa0208410:CDS | 60.0% | |
| !! | GGGCTATACACGGGTTGGGT+TGG | - | chr2_1:43476795-43476814 | Msa0208410:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 43474873 | 43479073 | 43474873 | ID=Msa0208410;Name=Msa0208410 |
| chr2_1 | mRNA | 43474873 | 43479073 | 43474873 | ID=Msa0208410-mRNA-1;Parent=Msa0208410;Name=Msa0208410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.8|0.83|1|1|1|6|142|463 |
| chr2_1 | exon | 43474873 | 43475482 | 43474873 | ID=Msa0208410-mRNA-1:exon:12850;Parent=Msa0208410-mRNA-1 |
| chr2_1 | exon | 43475793 | 43476140 | 43475793 | ID=Msa0208410-mRNA-1:exon:12849;Parent=Msa0208410-mRNA-1 |
| chr2_1 | exon | 43477647 | 43477825 | 43477647 | ID=Msa0208410-mRNA-1:exon:12848;Parent=Msa0208410-mRNA-1 |
| chr2_1 | exon | 43478479 | 43478581 | 43478479 | ID=Msa0208410-mRNA-1:exon:12847;Parent=Msa0208410-mRNA-1 |
| chr2_1 | exon | 43478677 | 43478889 | 43478677 | ID=Msa0208410-mRNA-1:exon:12846;Parent=Msa0208410-mRNA-1 |
| chr2_1 | exon | 43478993 | 43479073 | 43478993 | ID=Msa0208410-mRNA-1:exon:12845;Parent=Msa0208410-mRNA-1 |
| chr2_1 | CDS | 43478993 | 43479073 | 43478993 | ID=Msa0208410-mRNA-1:cds;Parent=Msa0208410-mRNA-1 |
| chr2_1 | CDS | 43478677 | 43478889 | 43478677 | ID=Msa0208410-mRNA-1:cds;Parent=Msa0208410-mRNA-1 |
| chr2_1 | CDS | 43478479 | 43478581 | 43478479 | ID=Msa0208410-mRNA-1:cds;Parent=Msa0208410-mRNA-1 |
| chr2_1 | CDS | 43477647 | 43477825 | 43477647 | ID=Msa0208410-mRNA-1:cds;Parent=Msa0208410-mRNA-1 |
| chr2_1 | CDS | 43475793 | 43476140 | 43475793 | ID=Msa0208410-mRNA-1:cds;Parent=Msa0208410-mRNA-1 |
| chr2_1 | CDS | 43475015 | 43475482 | 43475015 | ID=Msa0208410-mRNA-1:cds;Parent=Msa0208410-mRNA-1 |
| chr2_1 | three_prime_UTR | 43474873 | 43475014 | 43474873 | ID=Msa0208410-mRNA-1:three_prime_utr;Parent=Msa0208410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
