Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209200 | QKE45416.1 | 98.060 | 464 | 8 | 1 | 1 | 464 | 253 | 715 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209200 | sp|Q570S7|CSLG1_ARATH | 34.120 | 466 | 284 | 8 | 1 | 464 | 262 | 706 | 8.55e-92 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209200 | A0A7D3QB06 | 98.060 | 464 | 8 | 1 | 1 | 464 | 253 | 715 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208410 | Msa0209200 | 0.936910 | 8.137767e-98 | -8.615850e-47 |
| Msa0208420 | Msa0209200 | 0.820529 | 6.536683e-53 | -8.615850e-47 |
| Msa0208430 | Msa0209200 | 0.941606 | 3.104302e-101 | -8.615850e-47 |
| Msa0209200 | Msa0209220 | 0.863935 | 1.745124e-64 | -8.615850e-47 |
| Msa0209200 | Msa0283190 | 0.811206 | 7.861950e-51 | -8.615850e-47 |
| Msa0209200 | Msa1343110 | 0.816559 | 5.196856e-52 | -8.615850e-47 |
| Msa0209200 | Msa1353500 | 0.821786 | 3.355578e-53 | -8.615850e-47 |
| Msa0209200 | Msa1442090 | 0.893429 | 6.339514e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209200 | MtrunA17_Chr2g0307191 | 97.414 | 464 | 11 | 1 | 1 | 464 | 230 | 692 | 0.0 | 937 |
| Msa0209200 | MtrunA17_Chr3g0095791 | 82.328 | 464 | 81 | 1 | 1 | 464 | 229 | 691 | 0.0 | 811 |
| Msa0209200 | MtrunA17_Chr2g0298581 | 81.897 | 464 | 83 | 1 | 1 | 464 | 230 | 692 | 0.0 | 810 |
| Msa0209200 | MtrunA17_Chr3g0077511 | 69.762 | 463 | 137 | 2 | 4 | 464 | 233 | 694 | 0.0 | 694 |
| Msa0209200 | MtrunA17_Chr4g0046401 | 45.161 | 465 | 246 | 4 | 1 | 462 | 254 | 712 | 2.99e-131 | 396 |
| Msa0209200 | MtrunA17_Chr1g0186381 | 42.128 | 470 | 252 | 7 | 1 | 462 | 254 | 711 | 5.95e-127 | 385 |
| Msa0209200 | MtrunA17_Chr3g0102531 | 33.970 | 471 | 281 | 7 | 1 | 462 | 257 | 706 | 3.56e-87 | 281 |
| Msa0209200 | MtrunA17_Chr3g0102541 | 32.981 | 473 | 289 | 8 | 1 | 464 | 258 | 711 | 4.82e-86 | 278 |
| Msa0209200 | MtrunA17_Chr3g0102551 | 32.484 | 471 | 288 | 7 | 1 | 464 | 268 | 715 | 6.84e-81 | 265 |
| Msa0209200 | MtrunA17_Chr8g0379241 | 29.400 | 517 | 304 | 8 | 1 | 463 | 439 | 948 | 4.32e-68 | 234 |
| Msa0209200 | MtrunA17_Chr8g0364641 | 30.754 | 504 | 298 | 11 | 1 | 463 | 447 | 940 | 4.53e-66 | 229 |
| Msa0209200 | MtrunA17_Chr4g0073711 | 28.180 | 511 | 312 | 7 | 1 | 463 | 494 | 997 | 7.04e-66 | 228 |
| Msa0209200 | MtrunA17_Chr2g0284211 | 28.407 | 521 | 307 | 8 | 1 | 463 | 424 | 936 | 1.59e-65 | 227 |
| Msa0209200 | MtrunA17_Chr2g0307231 | 94.118 | 102 | 6 | 0 | 79 | 180 | 1 | 102 | 1.51e-63 | 201 |
| Msa0209200 | MtrunA17_Chr1g0183381 | 28.205 | 507 | 311 | 11 | 1 | 463 | 366 | 863 | 2.82e-61 | 214 |
| Msa0209200 | MtrunA17_Chr2g0322361 | 30.444 | 473 | 308 | 10 | 1 | 458 | 253 | 719 | 4.39e-61 | 212 |
| Msa0209200 | MtrunA17_Chr4g0025201 | 29.424 | 486 | 301 | 14 | 1 | 461 | 247 | 715 | 2.14e-60 | 210 |
| Msa0209200 | MtrunA17_Chr2g0322371 | 29.979 | 477 | 305 | 11 | 1 | 458 | 243 | 709 | 1.28e-58 | 205 |
| Msa0209200 | MtrunA17_Chr2g0322351 | 30.353 | 481 | 286 | 15 | 1 | 456 | 248 | 704 | 9.79e-58 | 202 |
| Msa0209200 | MtrunA17_Chr2g0297351 | 27.767 | 515 | 311 | 14 | 1 | 460 | 475 | 983 | 2.79e-54 | 195 |
| Msa0209200 | MtrunA17_Chr5g0410641 | 25.479 | 522 | 325 | 11 | 1 | 463 | 567 | 1083 | 9.73e-54 | 194 |
| Msa0209200 | MtrunA17_Chr4g0039801 | 26.437 | 522 | 320 | 11 | 1 | 463 | 588 | 1104 | 9.59e-51 | 185 |
| Msa0209200 | MtrunA17_Chr1g0165411 | 27.290 | 513 | 318 | 11 | 1 | 463 | 558 | 1065 | 2.82e-50 | 184 |
| Msa0209200 | MtrunA17_Chr7g0269741 | 25.709 | 529 | 318 | 11 | 1 | 462 | 611 | 1131 | 5.69e-47 | 174 |
| Msa0209200 | MtrunA17_Chr2g0307221 | 89.474 | 76 | 7 | 1 | 235 | 310 | 1 | 75 | 1.15e-40 | 140 |
| Msa0209200 | MtrunA17_Chr8g0352231 | 26.816 | 358 | 240 | 8 | 111 | 463 | 697 | 1037 | 3.05e-35 | 139 |
| Msa0209200 | MtrunA17_Chr8g0352231 | 41.667 | 132 | 77 | 0 | 1 | 132 | 514 | 645 | 2.80e-30 | 124 |
| Msa0209200 | MtrunA17_Chr8g0383701 | 28.485 | 330 | 212 | 7 | 143 | 462 | 739 | 1054 | 7.13e-34 | 135 |
| Msa0209200 | MtrunA17_Chr8g0383701 | 42.105 | 133 | 76 | 1 | 1 | 132 | 532 | 664 | 3.80e-30 | 124 |
| Msa0209200 | MtrunA17_Chr2g0296991 | 25.846 | 325 | 229 | 6 | 143 | 463 | 687 | 1003 | 2.38e-33 | 134 |
| Msa0209200 | MtrunA17_Chr2g0296991 | 41.935 | 124 | 72 | 0 | 1 | 124 | 465 | 588 | 1.09e-30 | 125 |
| Msa0209200 | MtrunA17_Chr7g0274751 | 31.136 | 273 | 133 | 6 | 1 | 219 | 376 | 647 | 1.08e-32 | 131 |
| Msa0209200 | MtrunA17_Chr7g0267731 | 26.829 | 328 | 221 | 9 | 143 | 462 | 628 | 944 | 1.14e-32 | 132 |
| Msa0209200 | MtrunA17_Chr7g0267731 | 42.742 | 124 | 71 | 0 | 1 | 124 | 426 | 549 | 1.79e-29 | 122 |
| Msa0209200 | MtrunA17_Chr3g0088821 | 26.994 | 326 | 225 | 7 | 143 | 463 | 720 | 1037 | 2.44e-32 | 130 |
| Msa0209200 | MtrunA17_Chr3g0088821 | 42.742 | 124 | 71 | 0 | 1 | 124 | 514 | 637 | 2.58e-30 | 125 |
| Msa0209200 | MtrunA17_Chr2g0322331 | 28.746 | 327 | 218 | 10 | 138 | 456 | 29 | 348 | 5.03e-32 | 125 |
| Msa0209200 | MtrunA17_Chr1g0201731 | 43.609 | 133 | 74 | 1 | 1 | 132 | 534 | 666 | 3.08e-31 | 127 |
| Msa0209200 | MtrunA17_Chr1g0201731 | 26.748 | 329 | 217 | 6 | 143 | 461 | 740 | 1054 | 3.59e-28 | 118 |
| Msa0209200 | MtrunA17_Chr3g0137951 | 27.729 | 339 | 206 | 11 | 143 | 463 | 728 | 1045 | 5.52e-31 | 127 |
| Msa0209200 | MtrunA17_Chr3g0137951 | 44.355 | 124 | 69 | 0 | 1 | 124 | 524 | 647 | 5.70e-28 | 117 |
| Msa0209200 | MtrunA17_Chr3g0078671 | 24.576 | 354 | 236 | 10 | 127 | 463 | 669 | 1008 | 4.11e-30 | 124 |
| Msa0209200 | MtrunA17_Chr3g0078671 | 42.857 | 133 | 75 | 1 | 1 | 132 | 481 | 613 | 2.24e-28 | 119 |
| Msa0209200 | MtrunA17_Chr1g0165421 | 38.686 | 137 | 82 | 2 | 1 | 137 | 572 | 706 | 6.55e-26 | 111 |
| Msa0209200 | MtrunA17_Chr1g0165421 | 26.780 | 295 | 209 | 5 | 172 | 463 | 803 | 1093 | 3.32e-23 | 103 |
| Msa0209200 | MtrunA17_Chr2g0322341 | 47.826 | 92 | 48 | 0 | 1 | 92 | 252 | 343 | 3.89e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209200 | AT4G24000.2 | 35.211 | 426 | 256 | 6 | 1 | 424 | 60 | 467 | 1.48e-93 | 293 |
| Msa0209200 | AT4G24010.1 | 34.120 | 466 | 284 | 8 | 1 | 464 | 262 | 706 | 8.69e-93 | 297 |
| Msa0209200 | AT4G23990.2 | 35.431 | 429 | 257 | 5 | 1 | 427 | 67 | 477 | 1.22e-92 | 291 |
| Msa0209200 | AT4G24000.1 | 35.211 | 426 | 256 | 6 | 1 | 424 | 252 | 659 | 2.17e-91 | 293 |
| Msa0209200 | AT4G23990.1 | 35.431 | 429 | 257 | 5 | 1 | 427 | 281 | 691 | 3.39e-90 | 290 |
| Msa0209200 | AT1G55850.1 | 32.043 | 465 | 287 | 6 | 1 | 462 | 266 | 704 | 7.27e-78 | 257 |
| Msa0209200 | AT5G17420.1 | 29.688 | 512 | 304 | 9 | 1 | 463 | 481 | 985 | 1.09e-71 | 245 |
| Msa0209200 | AT4G18780.1 | 28.927 | 522 | 306 | 7 | 1 | 463 | 427 | 942 | 3.07e-68 | 235 |
| Msa0209200 | AT5G64740.1 | 27.881 | 538 | 298 | 10 | 1 | 462 | 519 | 1042 | 1.62e-64 | 225 |
| Msa0209200 | AT2G32540.1 | 30.041 | 486 | 299 | 12 | 1 | 456 | 251 | 725 | 8.79e-57 | 201 |
| Msa0209200 | AT2G32530.1 | 30.515 | 485 | 298 | 12 | 1 | 456 | 251 | 725 | 1.26e-56 | 200 |
| Msa0209200 | AT2G32620.4 | 32.159 | 454 | 259 | 13 | 1 | 421 | 155 | 592 | 4.91e-53 | 189 |
| Msa0209200 | AT4G38190.1 | 27.327 | 505 | 320 | 11 | 1 | 463 | 569 | 1068 | 5.85e-53 | 192 |
| Msa0209200 | AT4G15290.1 | 29.670 | 455 | 279 | 12 | 1 | 426 | 251 | 693 | 1.59e-52 | 189 |
| Msa0209200 | AT2G32620.1 | 32.159 | 454 | 259 | 13 | 1 | 421 | 251 | 688 | 1.61e-52 | 189 |
| Msa0209200 | AT2G32610.1 | 32.018 | 456 | 269 | 13 | 1 | 425 | 252 | 697 | 3.78e-52 | 188 |
| Msa0209200 | AT3G03050.1 | 25.862 | 522 | 323 | 11 | 1 | 463 | 591 | 1107 | 1.90e-50 | 185 |
| Msa0209200 | AT4G15320.3 | 29.565 | 460 | 274 | 13 | 1 | 426 | 251 | 694 | 4.32e-50 | 182 |
| Msa0209200 | AT4G15320.5 | 29.565 | 460 | 274 | 13 | 1 | 426 | 251 | 694 | 4.39e-50 | 182 |
| Msa0209200 | AT4G15320.4 | 29.565 | 460 | 274 | 13 | 1 | 426 | 266 | 709 | 5.08e-50 | 182 |
| Msa0209200 | AT1G02730.1 | 26.316 | 532 | 311 | 12 | 1 | 460 | 619 | 1141 | 1.67e-49 | 182 |
| Msa0209200 | AT5G16910.1 | 25.434 | 519 | 326 | 11 | 1 | 463 | 594 | 1107 | 7.22e-49 | 180 |
| Msa0209200 | AT2G32620.3 | 35.890 | 326 | 182 | 8 | 1 | 309 | 251 | 566 | 1.20e-48 | 176 |
| Msa0209200 | AT1G32180.1 | 26.628 | 522 | 319 | 10 | 1 | 463 | 428 | 944 | 2.52e-48 | 178 |
| Msa0209200 | AT1G32180.2 | 26.628 | 522 | 319 | 10 | 1 | 463 | 428 | 944 | 2.52e-48 | 178 |
| Msa0209200 | AT2G33100.2 | 24.713 | 522 | 329 | 9 | 1 | 462 | 482 | 999 | 3.17e-48 | 178 |
| Msa0209200 | AT2G33100.1 | 24.713 | 522 | 329 | 9 | 1 | 462 | 482 | 999 | 3.17e-48 | 178 |
| Msa0209200 | AT2G32620.2 | 36.482 | 307 | 165 | 9 | 1 | 290 | 251 | 544 | 1.04e-46 | 170 |
| Msa0209200 | AT4G15320.2 | 28.686 | 373 | 189 | 10 | 1 | 309 | 251 | 610 | 2.28e-37 | 145 |
| Msa0209200 | AT4G15320.1 | 28.686 | 373 | 189 | 10 | 1 | 309 | 294 | 653 | 2.46e-37 | 145 |
| Msa0209200 | AT5G09870.1 | 45.865 | 133 | 71 | 1 | 1 | 132 | 507 | 639 | 3.55e-33 | 134 |
| Msa0209200 | AT5G09870.1 | 26.364 | 330 | 219 | 7 | 143 | 462 | 712 | 1027 | 1.24e-30 | 126 |
| Msa0209200 | AT4G32410.1 | 27.463 | 335 | 212 | 9 | 143 | 463 | 722 | 1039 | 2.24e-32 | 131 |
| Msa0209200 | AT4G32410.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 518 | 641 | 3.32e-28 | 119 |
| Msa0209200 | AT2G21770.1 | 26.364 | 330 | 219 | 7 | 143 | 462 | 730 | 1045 | 2.29e-32 | 131 |
| Msa0209200 | AT2G21770.1 | 43.609 | 133 | 74 | 1 | 1 | 132 | 525 | 657 | 7.14e-32 | 130 |
| Msa0209200 | AT4G39350.1 | 45.968 | 124 | 67 | 0 | 1 | 124 | 520 | 643 | 1.65e-31 | 129 |
| Msa0209200 | AT4G39350.1 | 27.052 | 329 | 218 | 6 | 143 | 462 | 726 | 1041 | 1.18e-30 | 126 |
| Msa0209200 | AT5G44030.3 | 27.410 | 332 | 217 | 8 | 143 | 463 | 411 | 729 | 5.35e-31 | 127 |
| Msa0209200 | AT5G44030.3 | 41.129 | 124 | 73 | 0 | 1 | 124 | 179 | 302 | 1.98e-28 | 119 |
| Msa0209200 | AT5G44030.2 | 27.410 | 332 | 217 | 8 | 143 | 463 | 719 | 1037 | 9.83e-31 | 126 |
| Msa0209200 | AT5G44030.2 | 41.129 | 124 | 73 | 0 | 1 | 124 | 487 | 610 | 3.05e-28 | 119 |
| Msa0209200 | AT5G44030.1 | 27.410 | 332 | 217 | 8 | 143 | 463 | 690 | 1008 | 1.05e-30 | 126 |
| Msa0209200 | AT5G44030.1 | 41.129 | 124 | 73 | 0 | 1 | 124 | 458 | 581 | 3.49e-28 | 119 |
| Msa0209200 | AT5G05170.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 502 | 625 | 1.55e-30 | 125 |
| Msa0209200 | AT5G05170.1 | 26.970 | 330 | 220 | 9 | 143 | 463 | 707 | 1024 | 1.91e-30 | 125 |
| Msa0209200 | AT2G25540.1 | 25.532 | 329 | 226 | 8 | 143 | 463 | 702 | 1019 | 2.22e-29 | 122 |
| Msa0209200 | AT2G25540.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 498 | 621 | 1.93e-28 | 119 |
Find 102 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTTCTTTGGTGGTTTA+TGG | 0.102162 | 2_1:+46464333 | Msa0209200:CDS |
| ATAAATATTGCTTGCTTCTT+TGG | 0.137497 | 2_1:+46464323 | Msa0209200:CDS |
| AAGTTCAGATGACCACTTTA+TGG | 0.185069 | 2_1:-46463498 | None:intergenic |
| GCAACATCTTTAGAGGTTTC+AGG | 0.218423 | 2_1:-46460714 | None:intergenic |
| TTCTCTAAGTCGTCCTATTC+TGG | 0.230855 | 2_1:+46464421 | Msa0209200:CDS |
| GGATATAGGCCGTTGCAAAT+TGG | 0.262786 | 2_1:-46463619 | None:intergenic |
| CCTATGAGAGAAACACAAAT+TGG | 0.275541 | 2_1:+46461814 | Msa0209200:CDS |
| CCAATTTGTGTTTCTCTCAT+AGG | 0.285482 | 2_1:-46461814 | None:intergenic |
| AACAAAAGCAACATCTTTAG+AGG | 0.287887 | 2_1:-46460721 | None:intergenic |
| AGTAGAAGTGCATTACTCTT+TGG | 0.329145 | 2_1:+46460974 | Msa0209200:CDS |
| AAATATAGCCCATTCACTTA+TGG | 0.354851 | 2_1:+46463539 | Msa0209200:CDS |
| CAAGGCAAAATTCACTTTAT+CGG | 0.355964 | 2_1:+46464199 | Msa0209200:CDS |
| AGTTCAGATGACCACTTTAT+GGG | 0.356305 | 2_1:-46463497 | None:intergenic |
| AAACTTGAGAGTACCGTTAC+TGG | 0.362985 | 2_1:+46463371 | Msa0209200:CDS |
| GATATAGGCCGTTGCAAATT+GGG | 0.364576 | 2_1:-46463618 | None:intergenic |
| AGTGGGATTGTAAAATCAAT+TGG | 0.369244 | 2_1:+46464128 | Msa0209200:CDS |
| ACGGCCTATATCCTCCTATA+TGG | 0.372537 | 2_1:+46463629 | Msa0209200:CDS |
| CTGGTGGCTCCTCGATGATT+TGG | 0.376584 | 2_1:+46464090 | Msa0209200:CDS |
| TCCTCAGATTTGCTTCTTGA+AGG | 0.386708 | 2_1:+46463658 | Msa0209200:CDS |
| TTTGGAAGTCCAAACCAAAA+AGG | 0.388326 | 2_1:+46460992 | Msa0209200:CDS |
| TGATTACAGCTTAGAGTGTC+AGG | 0.390631 | 2_1:+46460594 | Msa0209200:intron |
| TACATTGAGGTAATTTCAAC+TGG | 0.390946 | 2_1:+46464071 | Msa0209200:CDS |
| CGAGATACATAAACAACTAA+TGG | 0.399852 | 2_1:-46460422 | None:intergenic |
| CTAAGGTTGTGAAACATTTG+AGG | 0.415344 | 2_1:-46460750 | None:intergenic |
| CTATGAGAGAAACACAAATT+GGG | 0.429297 | 2_1:+46461815 | Msa0209200:CDS |
| CTTGATGCTCTATACAACTT+TGG | 0.431278 | 2_1:+46461678 | Msa0209200:CDS |
| AAAGGTTAAACAATGAATAG+TGG | 0.432663 | 2_1:-46463576 | None:intergenic |
| AATATTGCTTGCTTCTTTGG+TGG | 0.448903 | 2_1:+46464326 | Msa0209200:CDS |
| CATATATGTCTTTCTTGCTA+AGG | 0.452770 | 2_1:-46460767 | None:intergenic |
| CATTACAGGTTACAGATCCT+TGG | 0.455030 | 2_1:+46464003 | Msa0209200:intron |
| GATATAATCCCCTCCAGAAT+AGG | 0.455085 | 2_1:-46464434 | None:intergenic |
| CTTGAAAGGCCATAAGTGAA+TGG | 0.474502 | 2_1:-46463548 | None:intergenic |
| TCTGAGGAACGAATCCATAT+AGG | 0.477058 | 2_1:-46463643 | None:intergenic |
| CCTCAGATTTGCTTCTTGAA+GGG | 0.478015 | 2_1:+46463659 | Msa0209200:CDS |
| GAGAAAGTATATAGATAATG+AGG | 0.480925 | 2_1:-46464403 | None:intergenic |
| GGTCCAGGTCTAACCGGTAG+TGG | 0.491544 | 2_1:+46460941 | Msa0209200:CDS |
| TTGAAAGGCCATAAGTGAAT+GGG | 0.491625 | 2_1:-46463547 | None:intergenic |
| TAAGCTAAAGAAATATGAGC+AGG | 0.493122 | 2_1:+46464241 | Msa0209200:CDS |
| TTAAGAGGTCCAGGTCTAAC+CGG | 0.494171 | 2_1:+46460935 | Msa0209200:CDS |
| GTGGGATTGTAAAATCAATT+GGG | 0.497044 | 2_1:+46464129 | Msa0209200:CDS |
| ACTTATATAATTTCCACTAC+CGG | 0.497654 | 2_1:-46460954 | None:intergenic |
| GAATCCATATAGGAGGATAT+AGG | 0.499979 | 2_1:-46463633 | None:intergenic |
| TGTGCTTACCAAGTAACAAA+AGG | 0.502993 | 2_1:-46463594 | None:intergenic |
| AATCCCTCTTTCATGTCAGT+TGG | 0.503641 | 2_1:-46463467 | None:intergenic |
| TAAGGTTGTGAAACATTTGA+GGG | 0.508349 | 2_1:-46460749 | None:intergenic |
| ACAAAGTGGAAGGGAATGGA+TGG | 0.509961 | 2_1:+46460911 | Msa0209200:CDS |
| ATGGATGGATTAAGAGGTCC+AGG | 0.518984 | 2_1:+46460926 | Msa0209200:CDS |
| ATTGTGAGTAACACAATCAC+TGG | 0.521404 | 2_1:-46464302 | None:intergenic |
| TTTCTATTAGACAAAGTGGA+AGG | 0.522662 | 2_1:+46460901 | Msa0209200:intron |
| AATGTAATGATGAATTTGAC+TGG | 0.526323 | 2_1:-46464054 | None:intergenic |
| ATCTCCTCCATTGTAGAGGA+TGG | 0.527601 | 2_1:+46463396 | Msa0209200:CDS |
| GTGGCTCCTCGATGATTTGG+TGG | 0.533592 | 2_1:+46464093 | Msa0209200:CDS |
| CAATCTACGACAAGTACATA+AGG | 0.536818 | 2_1:-46460633 | None:intergenic |
| TTCTATTAGACAAAGTGGAA+GGG | 0.538234 | 2_1:+46460902 | Msa0209200:intron |
| AAGGTTAAACAATGAATAGT+GGG | 0.542914 | 2_1:-46463575 | None:intergenic |
| GGTGGAATGAACAAAGAAGT+GGG | 0.545717 | 2_1:+46464111 | Msa0209200:CDS |
| GTAATTTCTATTAGACAAAG+TGG | 0.553718 | 2_1:+46460897 | Msa0209200:intron |
| CTAAGTCGTCCTATTCTGGA+GGG | 0.554683 | 2_1:+46464425 | Msa0209200:CDS |
| TTAGACAAAGTGGAAGGGAA+TGG | 0.556621 | 2_1:+46460907 | Msa0209200:intron |
| TTGAATCTGTGAGGAACAGA+TGG | 0.556993 | 2_1:-46460455 | None:intergenic |
| GAATAGTGGGCAATCTTGAA+AGG | 0.559596 | 2_1:-46463562 | None:intergenic |
| TCAAATTCATCATTACATTG+AGG | 0.560781 | 2_1:+46464058 | Msa0209200:CDS |
| TTTCCACTACCGGTTAGACC+TGG | 0.561413 | 2_1:-46460944 | None:intergenic |
| TGATGGTGCAGCATTGCTCA+TGG | 0.561940 | 2_1:+46464277 | Msa0209200:CDS |
| TGCTCCAACTGACATGAAAG+AGG | 0.562817 | 2_1:+46463463 | Msa0209200:CDS |
| TTTACAAGAAGCATGTGAAG+TGG | 0.562845 | 2_1:+46461782 | Msa0209200:CDS |
| TCTAAGTCGTCCTATTCTGG+AGG | 0.571094 | 2_1:+46464424 | Msa0209200:CDS |
| TCTGTTCCTCACAGATTCAA+AGG | 0.573369 | 2_1:+46460458 | Msa0209200:CDS |
| ATTGAGGTAATTTCAACTGG+TGG | 0.581963 | 2_1:+46464074 | Msa0209200:CDS |
| GGCTATCTCCTCCATTGTAG+AGG | 0.585404 | 2_1:+46463392 | Msa0209200:CDS |
| TATCTATGAAGCGGAAGAGT+GGG | 0.586068 | 2_1:+46464453 | Msa0209200:CDS |
| TGGTGGAATGAACAAAGAAG+TGG | 0.587711 | 2_1:+46464110 | Msa0209200:CDS |
| TTGATCTCCATCCTCTACAA+TGG | 0.588017 | 2_1:-46463403 | None:intergenic |
| AGGAGGAGCTCTCAATACAT+TGG | 0.593942 | 2_1:+46460478 | Msa0209200:CDS |
| ATTTGAACCATGAAAAGAAG+AGG | 0.595843 | 2_1:+46464484 | Msa0209200:three_prime_UTR |
| GATTGATTCAACCCATAAAG+TGG | 0.596469 | 2_1:+46463486 | Msa0209200:CDS |
| TAAGTCGTCCTATTCTGGAG+GGG | 0.606867 | 2_1:+46464426 | Msa0209200:CDS |
| GTGTCAGGGCTAATCAGCAA+TGG | 0.607231 | 2_1:+46460609 | Msa0209200:CDS |
| ATATCTATGAAGCGGAAGAG+TGG | 0.607521 | 2_1:+46464452 | Msa0209200:CDS |
| GGGAATACCTCTATATCCAA+AGG | 0.609329 | 2_1:+46463679 | Msa0209200:CDS |
| GAGGAACGAATCCATATAGG+AGG | 0.616040 | 2_1:-46463640 | None:intergenic |
| AAGGGAATGGATGGATTAAG+AGG | 0.618466 | 2_1:+46460920 | Msa0209200:CDS |
| AAAATTCACTTTATCGGACA+AGG | 0.620711 | 2_1:+46464205 | Msa0209200:CDS |
| TATGAGAGAAACACAAATTG+GGG | 0.621432 | 2_1:+46461816 | Msa0209200:CDS |
| TTTGAACCATGAAAAGAAGA+GGG | 0.624361 | 2_1:+46464485 | Msa0209200:three_prime_UTR |
| ATCTCCATCCTCTACAATGG+AGG | 0.632406 | 2_1:-46463400 | None:intergenic |
| CCCTTCAAGAAGCAAATCTG+AGG | 0.636796 | 2_1:-46463659 | None:intergenic |
| AAGCTAAAGAAATATGAGCA+GGG | 0.640748 | 2_1:+46464242 | Msa0209200:CDS |
| GGAGCACATCCTAAGAAGCA+TGG | 0.641531 | 2_1:-46463446 | None:intergenic |
| AAACACAAATTGGGGTAACG+AGG | 0.644444 | 2_1:+46461824 | Msa0209200:CDS |
| GCTCCAACTGACATGAAAGA+GGG | 0.649039 | 2_1:+46463464 | Msa0209200:CDS |
| ACTGTAAACACTATAAACCA+AGG | 0.655731 | 2_1:-46464020 | None:intergenic |
| GATTACAGCTTAGAGTGTCA+GGG | 0.657273 | 2_1:+46460595 | Msa0209200:intron |
| TATGGAGACTACTCAATGTG+AGG | 0.662737 | 2_1:+46464351 | Msa0209200:CDS |
| AAGCACAACCCAATTTGCAA+CGG | 0.664325 | 2_1:+46463610 | Msa0209200:CDS |
| ACATATATGATAGTCAGACT+AGG | 0.669035 | 2_1:+46460781 | Msa0209200:CDS |
| AGGGGATTATATCTATGAAG+CGG | 0.671490 | 2_1:+46464444 | Msa0209200:CDS |
| TTCATTCCACCAAATCATCG+AGG | 0.679487 | 2_1:-46464099 | None:intergenic |
| ATGGAGGAGATAGCCAGTAA+CGG | 0.694391 | 2_1:-46463384 | None:intergenic |
| GCTCCTCCTTTGAATCTGTG+AGG | 0.696490 | 2_1:-46460464 | None:intergenic |
| GTTCCTCACAGATTCAAAGG+AGG | 0.708338 | 2_1:+46460461 | Msa0209200:CDS |
| GAATCACTAAAAGCATTACG+TGG | 0.753334 | 2_1:+46461720 | Msa0209200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAAAGAAAATTAAG+AGG | - | chr2_1:46460536-46460555 | None:intergenic | 10.0% |
| !! | AATTTATTATATTATACACA+GGG | - | chr2_1:46461476-46461495 | None:intergenic | 10.0% |
| !! | AAATTTATTATATTATACAC+AGG | - | chr2_1:46461477-46461496 | None:intergenic | 10.0% |
| !! | CATAATTATATAATTTCATT+TGG | - | chr2_1:46461930-46461949 | None:intergenic | 10.0% |
| !!! | ATTAATTTATTTTACATTAC+AGG | + | chr2_1:46463989-46464008 | Msa0209200:intron | 10.0% |
| !!! | AGATAAATAGCTTAAAATTT+TGG | - | chr2_1:46460827-46460846 | None:intergenic | 15.0% |
| !! | ACTTTATTATATTATACACA+GGG | - | chr2_1:46461444-46461463 | None:intergenic | 15.0% |
| !! | ATTTATTATATTATACACAG+GGG | - | chr2_1:46461475-46461494 | None:intergenic | 15.0% |
| !!! | ATGTGAATCATAATTTTTTT+AGG | + | chr2_1:46462001-46462020 | Msa0209200:intron | 15.0% |
| !!! | TGTGAATCATAATTTTTTTA+GGG | + | chr2_1:46462002-46462021 | Msa0209200:intron | 15.0% |
| !! | AAAAATTTATGGCTAAATTT+AGG | + | chr2_1:46462317-46462336 | Msa0209200:intron | 15.0% |
| !! | AAAATTTATGGCTAAATTTA+GGG | + | chr2_1:46462318-46462337 | Msa0209200:intron | 15.0% |
| !! | AATCTATTGTAAATAAAACT+AGG | + | chr2_1:46462489-46462508 | Msa0209200:intron | 15.0% |
| !! | ATCTATTGTAAATAAAACTA+GGG | + | chr2_1:46462490-46462509 | Msa0209200:intron | 15.0% |
| !! | GTAATTAGTTAGTATTATTA+AGG | + | chr2_1:46462826-46462845 | Msa0209200:intron | 15.0% |
| !! | AATATCAGTCAAATTAATAA+CGG | - | chr2_1:46463325-46463344 | None:intergenic | 15.0% |
| !! | GAATTCTAACAAATATTCTT+AGG | + | chr2_1:46461044-46461063 | Msa0209200:intron | 20.0% |
| !!! | TATTCTTAGGATATTGTTTT+AGG | + | chr2_1:46461057-46461076 | Msa0209200:intron | 20.0% |
| !!! | AAAAACTATTAGTCTTGTTT+TGG | - | chr2_1:46461356-46461375 | None:intergenic | 20.0% |
| !! | CTTTATTATATTATACACAG+GGG | - | chr2_1:46461443-46461462 | None:intergenic | 20.0% |
| !! | CACTTTATTATATTATACAC+AGG | - | chr2_1:46461445-46461464 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATTTATAATGGC+AGG | + | chr2_1:46461645-46461664 | Msa0209200:intron | 20.0% |
| !!! | TTTTTGAATTTATAATGGCA+GGG | + | chr2_1:46461646-46461665 | Msa0209200:intron | 20.0% |
| !! | AATTTAAATTCACACCTTAT+GGG | - | chr2_1:46462039-46462058 | None:intergenic | 20.0% |
| !! | AAATTTAAATTCACACCTTA+TGG | - | chr2_1:46462040-46462059 | None:intergenic | 20.0% |
| !! | AGTAAAATTAAAGAGATCAA+AGG | - | chr2_1:46462077-46462096 | None:intergenic | 20.0% |
| !! | TAACAAAATATTAAAGCTGA+TGG | - | chr2_1:46462145-46462164 | None:intergenic | 20.0% |
| !! | TTAAATTTATGGCTAGAATT+TGG | + | chr2_1:46462205-46462224 | Msa0209200:intron | 20.0% |
| !! | CACAAGGAAAAAAAAATTTA+TGG | + | chr2_1:46462306-46462325 | Msa0209200:intron | 20.0% |
| !! | TAAAATAAATCAATAACAGC+AGG | + | chr2_1:46462603-46462622 | Msa0209200:intron | 20.0% |
| !! | CTATAAATTTATCACATTGA+TGG | - | chr2_1:46462802-46462821 | None:intergenic | 20.0% |
| !! | CATCAATGTGATAAATTTAT+AGG | + | chr2_1:46462800-46462819 | Msa0209200:intron | 20.0% |
| !! | AATGTGATAAATTTATAGGT+GGG | + | chr2_1:46462804-46462823 | Msa0209200:intron | 20.0% |
| !! | ATAATTGTCTTCATCAAATA+AGG | + | chr2_1:46462876-46462895 | Msa0209200:intron | 20.0% |
| !! | TAATTGTCTTCATCAAATAA+GGG | + | chr2_1:46462877-46462896 | Msa0209200:intron | 20.0% |
| !! | ATATCAGTCAAATTAATAAC+GGG | - | chr2_1:46463324-46463343 | None:intergenic | 20.0% |
| !!! | ATTTATCCATATTTTACCTT+TGG | - | chr2_1:46463698-46463717 | None:intergenic | 20.0% |
| !!! | AAAAACTTATGAACACATTT+TGG | + | chr2_1:46463763-46463782 | Msa0209200:intron | 20.0% |
| !! | AATTAATAGAAGTAACATGT+TGG | - | chr2_1:46463976-46463995 | None:intergenic | 20.0% |
| !! | AAACAACGAAAAAAAAGTTT+GGG | + | chr2_1:46464171-46464190 | Msa0209200:CDS | 20.0% |
| !!! | AGTTTCAATTGTTTTTAAAG+TGG | + | chr2_1:46464596-46464615 | Msa0209200:three_prime_UTR | 20.0% |
| ! | GTAATTTCTATTAGACAAAG+TGG | + | chr2_1:46460897-46460916 | Msa0209200:intron | 25.0% |
| ! | ACTTATATAATTTCCACTAC+CGG | - | chr2_1:46460957-46460976 | None:intergenic | 25.0% |
| !!! | TAATTTGTACCTTTTTGGTT+TGG | - | chr2_1:46461004-46461023 | None:intergenic | 25.0% |
| !!! | TGTAGTAATTTGTACCTTTT+TGG | - | chr2_1:46461009-46461028 | None:intergenic | 25.0% |
| ! | AATGAATGTCTTAAGATCAT+TGG | - | chr2_1:46461166-46461185 | None:intergenic | 25.0% |
| !!! | AAGACTAATAGTTTTTTGTC+CGG | + | chr2_1:46461360-46461379 | Msa0209200:intron | 25.0% |
| !! | TTTTGAATTTATAATGGCAG+GGG | + | chr2_1:46461647-46461666 | Msa0209200:intron | 25.0% |
| !!! | GACTAGAGATTTTTTTTTGA+AGG | + | chr2_1:46462256-46462275 | Msa0209200:intron | 25.0% |
| ! | TTGTAAATAAAACTAGGGTT+AGG | + | chr2_1:46462495-46462514 | Msa0209200:intron | 25.0% |
| ! | CTTCTACCAAAAATGATTAT+GGG | - | chr2_1:46462525-46462544 | None:intergenic | 25.0% |
| ! | TCTTCTACCAAAAATGATTA+TGG | - | chr2_1:46462526-46462545 | None:intergenic | 25.0% |
| !! | TGGAATTGGGTTTAAATTTT+TGG | - | chr2_1:46462644-46462663 | None:intergenic | 25.0% |
| ! | CAATGTGATAAATTTATAGG+TGG | + | chr2_1:46462803-46462822 | Msa0209200:intron | 25.0% |
| ! | TGAAGACAATTATAATGAGA+CGG | - | chr2_1:46462869-46462888 | None:intergenic | 25.0% |
| ! | ACGTGAAAACTAAAATGAAA+CGG | + | chr2_1:46462970-46462989 | Msa0209200:intron | 25.0% |
| ! | TTAAGCTCAAAATTATGCAT+TGG | + | chr2_1:46463184-46463203 | Msa0209200:intron | 25.0% |
| ! | AATGAAAGTTTAATGTGAGT+TGG | - | chr2_1:46463274-46463293 | None:intergenic | 25.0% |
| !! | TTAATTTGACTGATATTCAC+AGG | + | chr2_1:46463328-46463347 | Msa0209200:intron | 25.0% |
| ! | AAGGTTAAACAATGAATAGT+GGG | - | chr2_1:46463578-46463597 | None:intergenic | 25.0% |
| ! | AAAGGTTAAACAATGAATAG+TGG | - | chr2_1:46463579-46463598 | None:intergenic | 25.0% |
| !! | TTGTTTAACCTTTTGTTACT+TGG | + | chr2_1:46463586-46463605 | Msa0209200:CDS | 25.0% |
| !! | TATTTTACCTTTGGATATAG+AGG | - | chr2_1:46463689-46463708 | None:intergenic | 25.0% |
| ! | CTATATCCAAAGGTAAAATA+TGG | + | chr2_1:46463689-46463708 | Msa0209200:intron | 25.0% |
| ! | TCAAATAAGTCAATTCTAAC+AGG | + | chr2_1:46463914-46463933 | Msa0209200:intron | 25.0% |
| ! | AATGTAATGATGAATTTGAC+TGG | - | chr2_1:46464057-46464076 | None:intergenic | 25.0% |
| ! | TCAAATTCATCATTACATTG+AGG | + | chr2_1:46464058-46464077 | Msa0209200:CDS | 25.0% |
| ! | GAAACAACGAAAAAAAAGTT+TGG | + | chr2_1:46464170-46464189 | Msa0209200:CDS | 25.0% |
| ! | ATAAATATTGCTTGCTTCTT+TGG | + | chr2_1:46464323-46464342 | Msa0209200:CDS | 25.0% |
| !!! | AGGAATTTTGATGAAATGTT+TGG | + | chr2_1:46464371-46464390 | Msa0209200:CDS | 25.0% |
| !! | GAGAAAGTATATAGATAATG+AGG | - | chr2_1:46464406-46464425 | None:intergenic | 25.0% |
| CGAGATACATAAACAACTAA+TGG | - | chr2_1:46460425-46460444 | None:intergenic | 30.0% | |
| ! | AAAAAAGCACATGGATTGTT+TGG | - | chr2_1:46460688-46460707 | None:intergenic | 30.0% |
| AACAAAAGCAACATCTTTAG+AGG | - | chr2_1:46460724-46460743 | None:intergenic | 30.0% | |
| TAAGGTTGTGAAACATTTGA+GGG | - | chr2_1:46460752-46460771 | None:intergenic | 30.0% | |
| CATATATGTCTTTCTTGCTA+AGG | - | chr2_1:46460770-46460789 | None:intergenic | 30.0% | |
| ACATATATGATAGTCAGACT+AGG | + | chr2_1:46460781-46460800 | Msa0209200:CDS | 30.0% | |
| TTTCTATTAGACAAAGTGGA+AGG | + | chr2_1:46460901-46460920 | Msa0209200:intron | 30.0% | |
| TTCTATTAGACAAAGTGGAA+GGG | + | chr2_1:46460902-46460921 | Msa0209200:intron | 30.0% | |
| TTAGAATTCTCGAAACTGTA+AGG | - | chr2_1:46461033-46461052 | None:intergenic | 30.0% | |
| !!! | AACTATTAGTCTTGTTTTGG+TGG | - | chr2_1:46461353-46461372 | None:intergenic | 30.0% |
| !!! | AGACTAATAGTTTTTTGTCC+GGG | + | chr2_1:46461361-46461380 | Msa0209200:intron | 30.0% |
| TAGAGATTCTATTTCAAACC+CGG | - | chr2_1:46461382-46461401 | None:intergenic | 30.0% | |
| ATTTATGTTACCTTCACCAA+TGG | + | chr2_1:46461539-46461558 | Msa0209200:intron | 30.0% | |
| ! | ATTGATTTCACCATATCCAT+TGG | - | chr2_1:46461558-46461577 | None:intergenic | 30.0% |
| CTATGAGAGAAACACAAATT+GGG | + | chr2_1:46461815-46461834 | Msa0209200:CDS | 30.0% | |
| TATGAGAGAAACACAAATTG+GGG | + | chr2_1:46461816-46461835 | Msa0209200:CDS | 30.0% | |
| CAATCCATTGAAAATTGAAC+GGG | - | chr2_1:46462392-46462411 | None:intergenic | 30.0% | |
| CCAATCCATTGAAAATTGAA+CGG | - | chr2_1:46462393-46462412 | None:intergenic | 30.0% | |
| !! | CGTTCAATTTTCAATGGATT+GGG | + | chr2_1:46462391-46462410 | Msa0209200:intron | 30.0% |
| TAAATAAAACTAGGGTTAGG+TGG | + | chr2_1:46462498-46462517 | Msa0209200:intron | 30.0% | |
| AAATAAAACTAGGGTTAGGT+GGG | + | chr2_1:46462499-46462518 | Msa0209200:intron | 30.0% | |
| ATAAATCAATAACAGCAGGT+CGG | + | chr2_1:46462607-46462626 | Msa0209200:intron | 30.0% | |
| !! | GTTTAAATTTTTGGACCCAA+TGG | - | chr2_1:46462635-46462654 | None:intergenic | 30.0% |
| !! | CAAAGTTTAGTTCTGGAATT+GGG | - | chr2_1:46462657-46462676 | None:intergenic | 30.0% |
| TGATGGTAAAATTTAGCTAG+CGG | - | chr2_1:46462785-46462804 | None:intergenic | 30.0% | |
| GAAGACAATTATAATGAGAC+GGG | - | chr2_1:46462868-46462887 | None:intergenic | 30.0% | |
| TTCAAATGAGTCATCTATTG+CGG | - | chr2_1:46463018-46463037 | None:intergenic | 30.0% | |
| TTGTGTCAAGTATTATGAGA+TGG | + | chr2_1:46463225-46463244 | Msa0209200:intron | 30.0% | |
| !! | GTTTAATGTGAGTTGGATTT+TGG | - | chr2_1:46463267-46463286 | None:intergenic | 30.0% |
| AAATATAGCCCATTCACTTA+TGG | + | chr2_1:46463539-46463558 | Msa0209200:CDS | 30.0% | |
| !! | ACTTATGAACACATTTTGGT+TGG | + | chr2_1:46463767-46463786 | Msa0209200:intron | 30.0% |
| !! | TTTGAAATGTGCTCGTTTTA+AGG | + | chr2_1:46463812-46463831 | Msa0209200:intron | 30.0% |
| ATAAGTCAATTCTAACAGGA+TGG | + | chr2_1:46463918-46463937 | Msa0209200:intron | 30.0% | |
| ACTGTAAACACTATAAACCA+AGG | - | chr2_1:46464023-46464042 | None:intergenic | 30.0% | |
| TACATTGAGGTAATTTCAAC+TGG | + | chr2_1:46464071-46464090 | Msa0209200:CDS | 30.0% | |
| AGTGGGATTGTAAAATCAAT+TGG | + | chr2_1:46464128-46464147 | Msa0209200:CDS | 30.0% | |
| GTGGGATTGTAAAATCAATT+GGG | + | chr2_1:46464129-46464148 | Msa0209200:CDS | 30.0% | |
| !! | AAAAAAGTTTGGGTTGAACA+AGG | + | chr2_1:46464181-46464200 | Msa0209200:CDS | 30.0% |
| CAAGGCAAAATTCACTTTAT+CGG | + | chr2_1:46464199-46464218 | Msa0209200:CDS | 30.0% | |
| AAAATTCACTTTATCGGACA+AGG | + | chr2_1:46464205-46464224 | Msa0209200:CDS | 30.0% | |
| TAAGCTAAAGAAATATGAGC+AGG | + | chr2_1:46464241-46464260 | Msa0209200:CDS | 30.0% | |
| AAGCTAAAGAAATATGAGCA+GGG | + | chr2_1:46464242-46464261 | Msa0209200:CDS | 30.0% | |
| !! | CAGGGTAAGTTTAATTTTGA+TGG | + | chr2_1:46464260-46464279 | Msa0209200:CDS | 30.0% |
| ATTTGAACCATGAAAAGAAG+AGG | + | chr2_1:46464484-46464503 | Msa0209200:three_prime_UTR | 30.0% | |
| TTTGAACCATGAAAAGAAGA+GGG | + | chr2_1:46464485-46464504 | Msa0209200:three_prime_UTR | 30.0% | |
| CAATCTACGACAAGTACATA+AGG | - | chr2_1:46460636-46460655 | None:intergenic | 35.0% | |
| ! | AGGATCAAGAAAAAAGCACA+TGG | - | chr2_1:46460697-46460716 | None:intergenic | 35.0% |
| CTAAGGTTGTGAAACATTTG+AGG | - | chr2_1:46460753-46460772 | None:intergenic | 35.0% | |
| ! | AGTAGAAGTGCATTACTCTT+TGG | + | chr2_1:46460974-46460993 | Msa0209200:CDS | 35.0% |
| TTTGGAAGTCCAAACCAAAA+AGG | + | chr2_1:46460992-46461011 | Msa0209200:CDS | 35.0% | |
| ! | TAAGCTTATCTCAGTTGGTA+GGG | + | chr2_1:46461290-46461309 | Msa0209200:intron | 35.0% |
| GACAATGCATAATATATGCG+AGG | + | chr2_1:46461312-46461331 | Msa0209200:intron | 35.0% | |
| !!! | TATTAGTCTTGTTTTGGTGG+TGG | - | chr2_1:46461350-46461369 | None:intergenic | 35.0% |
| GGTAAGTAACACAATTGGTT+TGG | - | chr2_1:46461422-46461441 | None:intergenic | 35.0% | |
| CTTGATGCTCTATACAACTT+TGG | + | chr2_1:46461678-46461697 | Msa0209200:CDS | 35.0% | |
| !! | GAATCACTAAAAGCATTACG+TGG | + | chr2_1:46461720-46461739 | Msa0209200:CDS | 35.0% |
| ! | TTTACAAGAAGCATGTGAAG+TGG | + | chr2_1:46461782-46461801 | Msa0209200:CDS | 35.0% |
| CCAATTTGTGTTTCTCTCAT+AGG | - | chr2_1:46461817-46461836 | None:intergenic | 35.0% | |
| CCTATGAGAGAAACACAAAT+TGG | + | chr2_1:46461814-46461833 | Msa0209200:CDS | 35.0% | |
| ! | GCTAAATTTAGGGCTATACA+CGG | + | chr2_1:46462328-46462347 | Msa0209200:intron | 35.0% |
| ! | CTAAATTTAGGGCTATACAC+GGG | + | chr2_1:46462329-46462348 | Msa0209200:intron | 35.0% |
| ! | CATTGAAAATTGAACGGGTT+GGG | - | chr2_1:46462387-46462406 | None:intergenic | 35.0% |
| ! | CCGTTCAATTTTCAATGGAT+TGG | + | chr2_1:46462390-46462409 | Msa0209200:intron | 35.0% |
| !! | GCAAAGTTTAGTTCTGGAAT+TGG | - | chr2_1:46462658-46462677 | None:intergenic | 35.0% |
| ATTCCAGAACTAAACTTTGC+TGG | + | chr2_1:46462658-46462677 | Msa0209200:intron | 35.0% | |
| CTTGGGTTCAGATAATTAGT+GGG | + | chr2_1:46462706-46462725 | Msa0209200:intron | 35.0% | |
| !! | GTTCAGATAATTAGTGGGTT+GGG | + | chr2_1:46462711-46462730 | Msa0209200:intron | 35.0% |
| TCAAATGAGTCATCTATTGC+GGG | - | chr2_1:46463017-46463036 | None:intergenic | 35.0% | |
| TGTCAAGTATTATGAGATGG+TGG | + | chr2_1:46463228-46463247 | Msa0209200:intron | 35.0% | |
| TTTGACTGATATTCACAGGT+TGG | + | chr2_1:46463332-46463351 | Msa0209200:intron | 35.0% | |
| !! | CTAAGAAGCATGGTCTTTTT+GGG | - | chr2_1:46463439-46463458 | None:intergenic | 35.0% |
| ! | GATTGATTCAACCCATAAAG+TGG | + | chr2_1:46463486-46463505 | Msa0209200:CDS | 35.0% |
| AGTTCAGATGACCACTTTAT+GGG | - | chr2_1:46463500-46463519 | None:intergenic | 35.0% | |
| AAGTTCAGATGACCACTTTA+TGG | - | chr2_1:46463501-46463520 | None:intergenic | 35.0% | |
| TTGAAAGGCCATAAGTGAAT+GGG | - | chr2_1:46463550-46463569 | None:intergenic | 35.0% | |
| TGTGCTTACCAAGTAACAAA+AGG | - | chr2_1:46463597-46463616 | None:intergenic | 35.0% | |
| GAATCCATATAGGAGGATAT+AGG | - | chr2_1:46463636-46463655 | None:intergenic | 35.0% | |
| !!! | TGAACACATTTTGGTTGGTT+TGG | + | chr2_1:46463772-46463791 | Msa0209200:intron | 35.0% |
| ATTGAGGTAATTTCAACTGG+TGG | + | chr2_1:46464074-46464093 | Msa0209200:CDS | 35.0% | |
| ATTGTGAGTAACACAATCAC+TGG | - | chr2_1:46464305-46464324 | None:intergenic | 35.0% | |
| AATATTGCTTGCTTCTTTGG+TGG | + | chr2_1:46464326-46464345 | Msa0209200:CDS | 35.0% | |
| AGGGGATTATATCTATGAAG+CGG | + | chr2_1:46464444-46464463 | Msa0209200:CDS | 35.0% | |
| ! | ACATATCCCTCTTCTTTTCA+TGG | - | chr2_1:46464494-46464513 | None:intergenic | 35.0% |
| TTGAATCTGTGAGGAACAGA+TGG | - | chr2_1:46460458-46460477 | None:intergenic | 40.0% | |
| TCTGTTCCTCACAGATTCAA+AGG | + | chr2_1:46460458-46460477 | Msa0209200:CDS | 40.0% | |
| ! | TGATTACAGCTTAGAGTGTC+AGG | + | chr2_1:46460594-46460613 | Msa0209200:intron | 40.0% |
| ! | GATTACAGCTTAGAGTGTCA+GGG | + | chr2_1:46460595-46460614 | Msa0209200:intron | 40.0% |
| ! | GCAACATCTTTAGAGGTTTC+AGG | - | chr2_1:46460717-46460736 | None:intergenic | 40.0% |
| !! | TCAGACTAGGACTGCTTTTA+CGG | + | chr2_1:46460794-46460813 | Msa0209200:CDS | 40.0% |
| TTAGACAAAGTGGAAGGGAA+TGG | + | chr2_1:46460907-46460926 | Msa0209200:intron | 40.0% | |
| !! | AAGGGAATGGATGGATTAAG+AGG | + | chr2_1:46460920-46460939 | Msa0209200:CDS | 40.0% |
| CTTCGTAAGCTTATCTCAGT+TGG | + | chr2_1:46461285-46461304 | Msa0209200:intron | 40.0% | |
| GTAAGCTTATCTCAGTTGGT+AGG | + | chr2_1:46461289-46461308 | Msa0209200:intron | 40.0% | |
| ACAGGGGTAAGTAACACAAT+TGG | - | chr2_1:46461427-46461446 | None:intergenic | 40.0% | |
| GTTACCTTCACCAATGGATA+TGG | + | chr2_1:46461545-46461564 | Msa0209200:intron | 40.0% | |
| TTCACCATATCCATTGGTGA+AGG | - | chr2_1:46461552-46461571 | None:intergenic | 40.0% | |
| TGGTGAAATCAATCGTAGAG+AGG | + | chr2_1:46461565-46461584 | Msa0209200:intron | 40.0% | |
| AAACACAAATTGGGGTAACG+AGG | + | chr2_1:46461824-46461843 | Msa0209200:CDS | 40.0% | |
| TTTCATGCGCCAATGAAAGT+TGG | + | chr2_1:46461964-46461983 | Msa0209200:intron | 40.0% | |
| GATATGCGTCAACAAACACA+AGG | + | chr2_1:46462290-46462309 | Msa0209200:intron | 40.0% | |
| !! | AACGGGTTGGGTAATTGATT+TGG | - | chr2_1:46462375-46462394 | None:intergenic | 40.0% |
| CCATTGAAAATTGAACGGGT+TGG | - | chr2_1:46462388-46462407 | None:intergenic | 40.0% | |
| ! | CCAACCCGTTCAATTTTCAA+TGG | + | chr2_1:46462385-46462404 | Msa0209200:intron | 40.0% |
| ! | CAACCAGCAAAGTTTAGTTC+TGG | - | chr2_1:46462664-46462683 | None:intergenic | 40.0% |
| AGATTGGATCTGCAAATGCT+TGG | + | chr2_1:46462688-46462707 | Msa0209200:intron | 40.0% | |
| GATTGGATCTGCAAATGCTT+GGG | + | chr2_1:46462689-46462708 | Msa0209200:intron | 40.0% | |
| GCTTGGGTTCAGATAATTAG+TGG | + | chr2_1:46462705-46462724 | Msa0209200:intron | 40.0% | |
| ! | GGTTCAGATAATTAGTGGGT+TGG | + | chr2_1:46462710-46462729 | Msa0209200:intron | 40.0% |
| ! | TAGGTGCAAGTCGATTTACA+CGG | - | chr2_1:46462750-46462769 | None:intergenic | 40.0% |
| AATGAGACGGGTGGAATATA+GGG | - | chr2_1:46462856-46462875 | None:intergenic | 40.0% | |
| TAATGAGACGGGTGGAATAT+AGG | - | chr2_1:46462857-46462876 | None:intergenic | 40.0% | |
| GACAATTATAATGAGACGGG+TGG | - | chr2_1:46462865-46462884 | None:intergenic | 40.0% | |
| ! | ATGCATTGGCATGCGTAATA+AGG | + | chr2_1:46463198-46463217 | Msa0209200:intron | 40.0% |
| !! | AAACTTGAGAGTACCGTTAC+TGG | + | chr2_1:46463371-46463390 | Msa0209200:CDS | 40.0% |
| TTGATCTCCATCCTCTACAA+TGG | - | chr2_1:46463406-46463425 | None:intergenic | 40.0% | |
| !! | CCTAAGAAGCATGGTCTTTT+TGG | - | chr2_1:46463440-46463459 | None:intergenic | 40.0% |
| CCAAAAAGACCATGCTTCTT+AGG | + | chr2_1:46463437-46463456 | Msa0209200:CDS | 40.0% | |
| AATCCCTCTTTCATGTCAGT+TGG | - | chr2_1:46463470-46463489 | None:intergenic | 40.0% | |
| CTTGAAAGGCCATAAGTGAA+TGG | - | chr2_1:46463551-46463570 | None:intergenic | 40.0% | |
| !! | GAATAGTGGGCAATCTTGAA+AGG | - | chr2_1:46463565-46463584 | None:intergenic | 40.0% |
| AAGCACAACCCAATTTGCAA+CGG | + | chr2_1:46463610-46463629 | Msa0209200:CDS | 40.0% | |
| GATATAGGCCGTTGCAAATT+GGG | - | chr2_1:46463621-46463640 | None:intergenic | 40.0% | |
| TCTGAGGAACGAATCCATAT+AGG | - | chr2_1:46463646-46463665 | None:intergenic | 40.0% | |
| ! | TCCTCAGATTTGCTTCTTGA+AGG | + | chr2_1:46463658-46463677 | Msa0209200:CDS | 40.0% |
| ! | CCTCAGATTTGCTTCTTGAA+GGG | + | chr2_1:46463659-46463678 | Msa0209200:CDS | 40.0% |
| GGGAATACCTCTATATCCAA+AGG | + | chr2_1:46463679-46463698 | Msa0209200:CDS | 40.0% | |
| !!! | ACACATTTTGGTTGGTTTGG+TGG | + | chr2_1:46463775-46463794 | Msa0209200:intron | 40.0% |
| CATTACAGGTTACAGATCCT+TGG | + | chr2_1:46464003-46464022 | Msa0209200:intron | 40.0% | |
| TTCATTCCACCAAATCATCG+AGG | - | chr2_1:46464102-46464121 | None:intergenic | 40.0% | |
| TGGTGGAATGAACAAAGAAG+TGG | + | chr2_1:46464110-46464129 | Msa0209200:CDS | 40.0% | |
| GGTGGAATGAACAAAGAAGT+GGG | + | chr2_1:46464111-46464130 | Msa0209200:CDS | 40.0% | |
| ! | CTTGCTTCTTTGGTGGTTTA+TGG | + | chr2_1:46464333-46464352 | Msa0209200:CDS | 40.0% |
| TATGGAGACTACTCAATGTG+AGG | + | chr2_1:46464351-46464370 | Msa0209200:CDS | 40.0% | |
| TTCTCTAAGTCGTCCTATTC+TGG | + | chr2_1:46464421-46464440 | Msa0209200:CDS | 40.0% | |
| GATATAATCCCCTCCAGAAT+AGG | - | chr2_1:46464437-46464456 | None:intergenic | 40.0% | |
| ATATCTATGAAGCGGAAGAG+TGG | + | chr2_1:46464452-46464471 | Msa0209200:CDS | 40.0% | |
| TATCTATGAAGCGGAAGAGT+GGG | + | chr2_1:46464453-46464472 | Msa0209200:CDS | 40.0% | |
| GTTCCTCACAGATTCAAAGG+AGG | + | chr2_1:46460461-46460480 | Msa0209200:CDS | 45.0% | |
| AGGAGGAGCTCTCAATACAT+TGG | + | chr2_1:46460478-46460497 | Msa0209200:CDS | 45.0% | |
| ACAAAGTGGAAGGGAATGGA+TGG | + | chr2_1:46460911-46460930 | Msa0209200:CDS | 45.0% | |
| !! | ATGGATGGATTAAGAGGTCC+AGG | + | chr2_1:46460926-46460945 | Msa0209200:CDS | 45.0% |
| TTAAGAGGTCCAGGTCTAAC+CGG | + | chr2_1:46460935-46460954 | Msa0209200:CDS | 45.0% | |
| TATATGCGAGGTTCGAACCT+CGG | + | chr2_1:46461324-46461343 | Msa0209200:intron | 45.0% | |
| ! | TGCGCCAATGAAAGTTGGTT+CGG | + | chr2_1:46461969-46461988 | Msa0209200:intron | 45.0% |
| CCATCCGAACCAACTTTCAT+TGG | - | chr2_1:46461976-46461995 | None:intergenic | 45.0% | |
| !! | CCAATGAAAGTTGGTTCGGA+TGG | + | chr2_1:46461973-46461992 | Msa0209200:intron | 45.0% |
| GGGAGTGAATCATACCCATA+AGG | + | chr2_1:46462022-46462041 | Msa0209200:intron | 45.0% | |
| ! | ATTTAGGGCTATACACGGGT+TGG | + | chr2_1:46462333-46462352 | Msa0209200:intron | 45.0% |
| ! | TTTAGGGCTATACACGGGTT+GGG | + | chr2_1:46462334-46462353 | Msa0209200:intron | 45.0% |
| ! | GGTGGGCCCATAATCATTTT+TGG | + | chr2_1:46462516-46462535 | Msa0209200:intron | 45.0% |
| CTAGCGGTGATCAGATTCAT+AGG | - | chr2_1:46462769-46462788 | None:intergenic | 45.0% | |
| ATGAGACGGGTGGAATATAG+GGG | - | chr2_1:46462855-46462874 | None:intergenic | 45.0% | |
| ATGAGTCATCTATTGCGGGA+CGG | - | chr2_1:46463013-46463032 | None:intergenic | 45.0% | |
| ATGGAGGAGATAGCCAGTAA+CGG | - | chr2_1:46463387-46463406 | None:intergenic | 45.0% | |
| ATCTCCTCCATTGTAGAGGA+TGG | + | chr2_1:46463396-46463415 | Msa0209200:CDS | 45.0% | |
| ATCTCCATCCTCTACAATGG+AGG | - | chr2_1:46463403-46463422 | None:intergenic | 45.0% | |
| TGCTCCAACTGACATGAAAG+AGG | + | chr2_1:46463463-46463482 | Msa0209200:CDS | 45.0% | |
| GCTCCAACTGACATGAAAGA+GGG | + | chr2_1:46463464-46463483 | Msa0209200:CDS | 45.0% | |
| GGATATAGGCCGTTGCAAAT+TGG | - | chr2_1:46463622-46463641 | None:intergenic | 45.0% | |
| ACGGCCTATATCCTCCTATA+TGG | + | chr2_1:46463629-46463648 | Msa0209200:CDS | 45.0% | |
| GAGGAACGAATCCATATAGG+AGG | - | chr2_1:46463643-46463662 | None:intergenic | 45.0% | |
| CCCTTCAAGAAGCAAATCTG+AGG | - | chr2_1:46463662-46463681 | None:intergenic | 45.0% | |
| TCTAAGTCGTCCTATTCTGG+AGG | + | chr2_1:46464424-46464443 | Msa0209200:CDS | 45.0% | |
| CTAAGTCGTCCTATTCTGGA+GGG | + | chr2_1:46464425-46464444 | Msa0209200:CDS | 45.0% | |
| ! | TAAGTCGTCCTATTCTGGAG+GGG | + | chr2_1:46464426-46464445 | Msa0209200:CDS | 45.0% |
| !!! | TTTTTTTTTTGAATTTATAA+TGG | + | chr2_1:46461641-46461660 | Msa0209200:intron | 5.0% |
| !! | TTAAATTATAGTTAAATTTA+TGG | + | chr2_1:46462194-46462213 | Msa0209200:intron | 5.0% |
| !!! | TAATAATTTTATTAAAATGT+GGG | - | chr2_1:46462429-46462448 | None:intergenic | 5.0% |
| !!! | ATAATAATTTTATTAAAATG+TGG | - | chr2_1:46462430-46462449 | None:intergenic | 5.0% |
| !!! | TAAATTTTTAAAAAAAATTG+TGG | + | chr2_1:46462455-46462474 | Msa0209200:intron | 5.0% |
| GCTCCTCCTTTGAATCTGTG+AGG | - | chr2_1:46460467-46460486 | None:intergenic | 50.0% | |
| GTGTCAGGGCTAATCAGCAA+TGG | + | chr2_1:46460609-46460628 | Msa0209200:CDS | 50.0% | |
| ! | TTTCCACTACCGGTTAGACC+TGG | - | chr2_1:46460947-46460966 | None:intergenic | 50.0% |
| !! | GGGTTGGGTTGGAACAAGTT+TGG | + | chr2_1:46462349-46462368 | Msa0209200:intron | 50.0% |
| TAACAGCAGGTCGGATCCAT+TGG | + | chr2_1:46462616-46462635 | Msa0209200:intron | 50.0% | |
| AACAGCAGGTCGGATCCATT+GGG | + | chr2_1:46462617-46462636 | Msa0209200:intron | 50.0% | |
| ! | CTTTGCTGGTTGCAGCAGAT+TGG | + | chr2_1:46462672-46462691 | Msa0209200:intron | 50.0% |
| GGCTATCTCCTCCATTGTAG+AGG | + | chr2_1:46463392-46463411 | Msa0209200:CDS | 50.0% | |
| GGAGCACATCCTAAGAAGCA+TGG | - | chr2_1:46463449-46463468 | None:intergenic | 50.0% | |
| ! | TGATGGTGCAGCATTGCTCA+TGG | + | chr2_1:46464277-46464296 | Msa0209200:CDS | 50.0% |
| !!! | TCTTGTTTTGGTGGTGGCCG+AGG | - | chr2_1:46461344-46461363 | None:intergenic | 55.0% |
| GTCATCTATTGCGGGACGGA+GGG | - | chr2_1:46463009-46463028 | None:intergenic | 55.0% | |
| AGTCATCTATTGCGGGACGG+AGG | - | chr2_1:46463010-46463029 | None:intergenic | 55.0% | |
| CTGGTGGCTCCTCGATGATT+TGG | + | chr2_1:46464090-46464109 | Msa0209200:CDS | 55.0% | |
| ! | GTGGCTCCTCGATGATTTGG+TGG | + | chr2_1:46464093-46464112 | Msa0209200:CDS | 55.0% |
| GGTCCAGGTCTAACCGGTAG+TGG | + | chr2_1:46460941-46460960 | Msa0209200:CDS | 60.0% | |
| !! | GGGCTATACACGGGTTGGGT+TGG | + | chr2_1:46462338-46462357 | Msa0209200:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 46460419 | 46464619 | 46460419 | ID=Msa0209200;Name=Msa0209200 |
| chr2_1 | mRNA | 46460419 | 46464619 | 46460419 | ID=Msa0209200-mRNA-1;Parent=Msa0209200;Name=Msa0209200-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.8|0.83|1|1|1|6|141|464 |
| chr2_1 | exon | 46460419 | 46460499 | 46460419 | ID=Msa0209200-mRNA-1:exon:13285;Parent=Msa0209200-mRNA-1 |
| chr2_1 | exon | 46460603 | 46460815 | 46460603 | ID=Msa0209200-mRNA-1:exon:13286;Parent=Msa0209200-mRNA-1 |
| chr2_1 | exon | 46460911 | 46461013 | 46460911 | ID=Msa0209200-mRNA-1:exon:13287;Parent=Msa0209200-mRNA-1 |
| chr2_1 | exon | 46461667 | 46461845 | 46461667 | ID=Msa0209200-mRNA-1:exon:13288;Parent=Msa0209200-mRNA-1 |
| chr2_1 | exon | 46463350 | 46463700 | 46463350 | ID=Msa0209200-mRNA-1:exon:13289;Parent=Msa0209200-mRNA-1 |
| chr2_1 | exon | 46464011 | 46464619 | 46464011 | ID=Msa0209200-mRNA-1:exon:13290;Parent=Msa0209200-mRNA-1 |
| chr2_1 | CDS | 46460419 | 46460499 | 46460419 | ID=Msa0209200-mRNA-1:cds;Parent=Msa0209200-mRNA-1 |
| chr2_1 | CDS | 46460603 | 46460815 | 46460603 | ID=Msa0209200-mRNA-1:cds;Parent=Msa0209200-mRNA-1 |
| chr2_1 | CDS | 46460911 | 46461013 | 46460911 | ID=Msa0209200-mRNA-1:cds;Parent=Msa0209200-mRNA-1 |
| chr2_1 | CDS | 46461667 | 46461845 | 46461667 | ID=Msa0209200-mRNA-1:cds;Parent=Msa0209200-mRNA-1 |
| chr2_1 | CDS | 46463350 | 46463700 | 46463350 | ID=Msa0209200-mRNA-1:cds;Parent=Msa0209200-mRNA-1 |
| chr2_1 | CDS | 46464011 | 46464478 | 46464011 | ID=Msa0209200-mRNA-1:cds;Parent=Msa0209200-mRNA-1 |
| chr2_1 | three_prime_UTR | 46464479 | 46464619 | 46464479 | ID=Msa0209200-mRNA-1:three_prime_utr;Parent=Msa0209200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
