Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208430 | QKE45416.1 | 98.272 | 463 | 8 | 0 | 1 | 463 | 253 | 715 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208430 | sp|Q570S7|CSLG1_ARATH | 33.978 | 465 | 285 | 7 | 1 | 463 | 262 | 706 | 2.29e-92 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208430 | A0A7D3QB06 | 98.272 | 463 | 8 | 0 | 1 | 463 | 253 | 715 | 0.0 | 948 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208410 | Msa0208430 | 0.981014 | 1.437859e-151 | -8.615850e-47 |
| Msa0208430 | Msa0209200 | 0.941606 | 3.104302e-101 | -8.615850e-47 |
| Msa0208430 | Msa0209220 | 0.824421 | 8.144796e-54 | -8.615850e-47 |
| Msa0208430 | Msa0283190 | 0.834069 | 3.708624e-56 | -8.615850e-47 |
| Msa0208430 | Msa1343110 | 0.825309 | 5.027563e-54 | -8.615850e-47 |
| Msa0208430 | Msa1353500 | 0.830639 | 2.621736e-55 | -8.615850e-47 |
| Msa0208430 | Msa1442090 | 0.935767 | 5.046770e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208430 | MtrunA17_Chr2g0307191 | 97.624 | 463 | 11 | 0 | 1 | 463 | 230 | 692 | 0.0 | 941 |
| Msa0208430 | MtrunA17_Chr3g0095791 | 82.505 | 463 | 81 | 0 | 1 | 463 | 229 | 691 | 0.0 | 815 |
| Msa0208430 | MtrunA17_Chr2g0298581 | 82.073 | 463 | 83 | 0 | 1 | 463 | 230 | 692 | 0.0 | 814 |
| Msa0208430 | MtrunA17_Chr3g0077511 | 69.913 | 462 | 137 | 1 | 4 | 463 | 233 | 694 | 0.0 | 699 |
| Msa0208430 | MtrunA17_Chr4g0046401 | 44.589 | 462 | 252 | 2 | 1 | 461 | 254 | 712 | 5.63e-132 | 398 |
| Msa0208430 | MtrunA17_Chr1g0186381 | 41.720 | 465 | 260 | 4 | 1 | 461 | 254 | 711 | 1.71e-127 | 387 |
| Msa0208430 | MtrunA17_Chr3g0102531 | 33.547 | 468 | 286 | 5 | 1 | 461 | 257 | 706 | 1.84e-87 | 282 |
| Msa0208430 | MtrunA17_Chr3g0102541 | 33.051 | 472 | 289 | 8 | 1 | 463 | 258 | 711 | 3.30e-86 | 279 |
| Msa0208430 | MtrunA17_Chr3g0102551 | 32.051 | 468 | 293 | 5 | 1 | 463 | 268 | 715 | 1.21e-81 | 267 |
| Msa0208430 | MtrunA17_Chr8g0379241 | 29.264 | 516 | 305 | 7 | 1 | 462 | 439 | 948 | 2.97e-68 | 234 |
| Msa0208430 | MtrunA17_Chr2g0284211 | 28.269 | 520 | 308 | 7 | 1 | 462 | 424 | 936 | 1.18e-65 | 227 |
| Msa0208430 | MtrunA17_Chr8g0364641 | 30.754 | 504 | 297 | 11 | 1 | 462 | 447 | 940 | 1.52e-65 | 227 |
| Msa0208430 | MtrunA17_Chr4g0073711 | 28.180 | 511 | 311 | 7 | 1 | 462 | 494 | 997 | 4.89e-65 | 226 |
| Msa0208430 | MtrunA17_Chr2g0307231 | 94.118 | 102 | 6 | 0 | 79 | 180 | 1 | 102 | 1.47e-63 | 201 |
| Msa0208430 | MtrunA17_Chr2g0322361 | 30.277 | 469 | 313 | 8 | 1 | 457 | 253 | 719 | 1.34e-61 | 213 |
| Msa0208430 | MtrunA17_Chr1g0183381 | 27.866 | 506 | 313 | 10 | 1 | 462 | 366 | 863 | 1.14e-60 | 213 |
| Msa0208430 | MtrunA17_Chr4g0025201 | 29.387 | 473 | 317 | 11 | 1 | 460 | 247 | 715 | 1.17e-60 | 211 |
| Msa0208430 | MtrunA17_Chr2g0322371 | 29.810 | 473 | 310 | 9 | 1 | 457 | 243 | 709 | 3.75e-59 | 206 |
| Msa0208430 | MtrunA17_Chr2g0322351 | 30.213 | 470 | 300 | 13 | 1 | 455 | 248 | 704 | 3.08e-58 | 204 |
| Msa0208430 | MtrunA17_Chr2g0297351 | 27.767 | 515 | 310 | 15 | 1 | 459 | 475 | 983 | 1.14e-52 | 191 |
| Msa0208430 | MtrunA17_Chr5g0410641 | 25.670 | 522 | 323 | 12 | 1 | 462 | 567 | 1083 | 2.54e-52 | 190 |
| Msa0208430 | MtrunA17_Chr4g0039801 | 27.151 | 523 | 314 | 11 | 1 | 462 | 588 | 1104 | 1.44e-49 | 182 |
| Msa0208430 | MtrunA17_Chr1g0165411 | 27.148 | 512 | 319 | 10 | 1 | 462 | 558 | 1065 | 2.90e-49 | 181 |
| Msa0208430 | MtrunA17_Chr7g0269741 | 26.654 | 544 | 293 | 14 | 1 | 461 | 611 | 1131 | 3.26e-46 | 172 |
| Msa0208430 | MtrunA17_Chr2g0307221 | 90.667 | 75 | 7 | 0 | 235 | 309 | 1 | 75 | 1.92e-42 | 145 |
| Msa0208430 | MtrunA17_Chr8g0352231 | 26.536 | 358 | 240 | 8 | 111 | 462 | 697 | 1037 | 1.05e-34 | 138 |
| Msa0208430 | MtrunA17_Chr8g0352231 | 41.667 | 132 | 77 | 0 | 1 | 132 | 514 | 645 | 2.50e-30 | 125 |
| Msa0208430 | MtrunA17_Chr8g0383701 | 29.102 | 323 | 218 | 6 | 143 | 461 | 739 | 1054 | 3.95e-34 | 136 |
| Msa0208430 | MtrunA17_Chr8g0383701 | 42.105 | 133 | 76 | 1 | 1 | 132 | 532 | 664 | 3.95e-30 | 124 |
| Msa0208430 | MtrunA17_Chr2g0322331 | 28.395 | 324 | 222 | 8 | 138 | 455 | 29 | 348 | 1.70e-33 | 130 |
| Msa0208430 | MtrunA17_Chr7g0267731 | 26.769 | 325 | 224 | 7 | 143 | 461 | 628 | 944 | 3.05e-33 | 133 |
| Msa0208430 | MtrunA17_Chr7g0267731 | 42.742 | 124 | 71 | 0 | 1 | 124 | 426 | 549 | 1.69e-29 | 122 |
| Msa0208430 | MtrunA17_Chr2g0296991 | 25.309 | 324 | 231 | 5 | 143 | 462 | 687 | 1003 | 8.15e-33 | 132 |
| Msa0208430 | MtrunA17_Chr2g0296991 | 41.935 | 124 | 72 | 0 | 1 | 124 | 465 | 588 | 1.17e-30 | 125 |
| Msa0208430 | MtrunA17_Chr7g0274751 | 31.136 | 273 | 133 | 6 | 1 | 219 | 376 | 647 | 1.08e-32 | 131 |
| Msa0208430 | MtrunA17_Chr3g0088821 | 26.687 | 326 | 225 | 7 | 143 | 462 | 720 | 1037 | 1.12e-31 | 129 |
| Msa0208430 | MtrunA17_Chr3g0088821 | 42.742 | 124 | 71 | 0 | 1 | 124 | 514 | 637 | 2.64e-30 | 124 |
| Msa0208430 | MtrunA17_Chr1g0201731 | 43.609 | 133 | 74 | 1 | 1 | 132 | 534 | 666 | 2.92e-31 | 127 |
| Msa0208430 | MtrunA17_Chr1g0201731 | 27.329 | 322 | 223 | 5 | 143 | 460 | 740 | 1054 | 2.39e-28 | 119 |
| Msa0208430 | MtrunA17_Chr3g0137951 | 27.108 | 332 | 216 | 10 | 143 | 462 | 728 | 1045 | 1.73e-30 | 125 |
| Msa0208430 | MtrunA17_Chr3g0137951 | 44.355 | 124 | 69 | 0 | 1 | 124 | 524 | 647 | 5.17e-28 | 117 |
| Msa0208430 | MtrunA17_Chr3g0078671 | 24.069 | 349 | 243 | 7 | 127 | 462 | 669 | 1008 | 2.37e-30 | 125 |
| Msa0208430 | MtrunA17_Chr3g0078671 | 42.857 | 133 | 75 | 1 | 1 | 132 | 481 | 613 | 2.15e-28 | 119 |
| Msa0208430 | MtrunA17_Chr1g0165421 | 38.686 | 137 | 82 | 2 | 1 | 137 | 572 | 706 | 7.34e-26 | 111 |
| Msa0208430 | MtrunA17_Chr1g0165421 | 27.119 | 295 | 207 | 6 | 172 | 462 | 803 | 1093 | 8.96e-22 | 99.0 |
| Msa0208430 | MtrunA17_Chr2g0322341 | 47.826 | 92 | 48 | 0 | 1 | 92 | 252 | 343 | 3.93e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208430 | AT4G24000.2 | 35.059 | 425 | 257 | 5 | 1 | 423 | 60 | 467 | 1.48e-94 | 295 |
| Msa0208430 | AT4G23990.2 | 35.514 | 428 | 257 | 4 | 1 | 426 | 67 | 477 | 8.30e-94 | 294 |
| Msa0208430 | AT4G24010.1 | 33.978 | 465 | 285 | 7 | 1 | 463 | 262 | 706 | 2.33e-93 | 299 |
| Msa0208430 | AT4G24000.1 | 35.059 | 425 | 257 | 5 | 1 | 423 | 252 | 659 | 2.34e-92 | 295 |
| Msa0208430 | AT4G23990.1 | 35.514 | 428 | 257 | 4 | 1 | 426 | 281 | 691 | 2.73e-91 | 293 |
| Msa0208430 | AT1G55850.1 | 31.897 | 464 | 288 | 5 | 1 | 461 | 266 | 704 | 1.71e-78 | 259 |
| Msa0208430 | AT5G17420.1 | 29.688 | 512 | 303 | 9 | 1 | 462 | 481 | 985 | 1.65e-70 | 242 |
| Msa0208430 | AT4G18780.1 | 28.791 | 521 | 307 | 6 | 1 | 462 | 427 | 942 | 2.42e-68 | 235 |
| Msa0208430 | AT5G64740.1 | 28.119 | 537 | 297 | 10 | 1 | 461 | 519 | 1042 | 9.87e-65 | 226 |
| Msa0208430 | AT2G32540.1 | 29.897 | 485 | 300 | 11 | 1 | 455 | 251 | 725 | 5.55e-58 | 204 |
| Msa0208430 | AT2G32530.1 | 30.165 | 484 | 300 | 11 | 1 | 455 | 251 | 725 | 1.61e-57 | 202 |
| Msa0208430 | AT2G32620.4 | 31.788 | 453 | 261 | 12 | 1 | 420 | 155 | 592 | 2.03e-53 | 190 |
| Msa0208430 | AT2G32620.1 | 31.788 | 453 | 261 | 12 | 1 | 420 | 251 | 688 | 7.09e-53 | 190 |
| Msa0208430 | AT4G15290.1 | 29.386 | 456 | 278 | 14 | 1 | 425 | 251 | 693 | 1.06e-51 | 186 |
| Msa0208430 | AT4G38190.1 | 27.525 | 505 | 318 | 12 | 1 | 462 | 569 | 1068 | 1.50e-51 | 188 |
| Msa0208430 | AT2G32610.1 | 31.398 | 465 | 259 | 14 | 1 | 424 | 252 | 697 | 2.79e-51 | 185 |
| Msa0208430 | AT4G15320.3 | 29.412 | 459 | 275 | 13 | 1 | 425 | 251 | 694 | 1.99e-50 | 183 |
| Msa0208430 | AT4G15320.5 | 29.412 | 459 | 275 | 13 | 1 | 425 | 251 | 694 | 2.05e-50 | 183 |
| Msa0208430 | AT4G15320.4 | 29.412 | 459 | 275 | 13 | 1 | 425 | 266 | 709 | 2.21e-50 | 183 |
| Msa0208430 | AT3G03050.1 | 26.054 | 522 | 321 | 12 | 1 | 462 | 591 | 1107 | 5.73e-49 | 180 |
| Msa0208430 | AT2G32620.3 | 35.692 | 325 | 183 | 7 | 1 | 308 | 251 | 566 | 6.53e-49 | 177 |
| Msa0208430 | AT1G02730.1 | 26.316 | 532 | 310 | 13 | 1 | 459 | 619 | 1141 | 3.96e-48 | 178 |
| Msa0208430 | AT5G16910.1 | 25.626 | 519 | 324 | 12 | 1 | 462 | 594 | 1107 | 1.73e-47 | 176 |
| Msa0208430 | AT1G32180.1 | 26.628 | 522 | 318 | 11 | 1 | 462 | 428 | 944 | 5.34e-47 | 174 |
| Msa0208430 | AT1G32180.2 | 26.628 | 522 | 318 | 11 | 1 | 462 | 428 | 944 | 5.34e-47 | 174 |
| Msa0208430 | AT2G32620.2 | 36.482 | 307 | 165 | 9 | 1 | 290 | 251 | 544 | 9.20e-47 | 170 |
| Msa0208430 | AT2G33100.2 | 24.713 | 522 | 328 | 10 | 1 | 461 | 482 | 999 | 1.47e-46 | 173 |
| Msa0208430 | AT2G33100.1 | 24.713 | 522 | 328 | 10 | 1 | 461 | 482 | 999 | 1.47e-46 | 173 |
| Msa0208430 | AT4G15320.2 | 28.495 | 372 | 190 | 10 | 1 | 308 | 251 | 610 | 1.31e-37 | 146 |
| Msa0208430 | AT4G15320.1 | 28.495 | 372 | 190 | 10 | 1 | 308 | 294 | 653 | 1.35e-37 | 146 |
| Msa0208430 | AT4G32410.1 | 27.439 | 328 | 220 | 7 | 143 | 462 | 722 | 1039 | 2.68e-33 | 134 |
| Msa0208430 | AT4G32410.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 518 | 641 | 3.10e-28 | 119 |
| Msa0208430 | AT5G09870.1 | 45.865 | 133 | 71 | 1 | 1 | 132 | 507 | 639 | 3.33e-33 | 134 |
| Msa0208430 | AT5G09870.1 | 26.140 | 329 | 220 | 7 | 143 | 461 | 712 | 1027 | 2.56e-30 | 125 |
| Msa0208430 | AT2G21770.1 | 26.140 | 329 | 220 | 7 | 143 | 461 | 730 | 1045 | 5.73e-32 | 130 |
| Msa0208430 | AT2G21770.1 | 43.609 | 133 | 74 | 1 | 1 | 132 | 525 | 657 | 7.42e-32 | 130 |
| Msa0208430 | AT4G39350.1 | 45.968 | 124 | 67 | 0 | 1 | 124 | 520 | 643 | 1.61e-31 | 129 |
| Msa0208430 | AT4G39350.1 | 27.439 | 328 | 217 | 6 | 143 | 461 | 726 | 1041 | 7.49e-31 | 127 |
| Msa0208430 | AT5G05170.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 502 | 625 | 1.44e-30 | 126 |
| Msa0208430 | AT5G05170.1 | 26.667 | 330 | 220 | 9 | 143 | 462 | 707 | 1024 | 6.46e-30 | 124 |
| Msa0208430 | AT5G44030.3 | 26.769 | 325 | 227 | 7 | 143 | 462 | 411 | 729 | 3.37e-30 | 124 |
| Msa0208430 | AT5G44030.3 | 41.129 | 124 | 73 | 0 | 1 | 124 | 179 | 302 | 1.83e-28 | 119 |
| Msa0208430 | AT5G44030.2 | 26.769 | 325 | 227 | 7 | 143 | 462 | 719 | 1037 | 6.20e-30 | 124 |
| Msa0208430 | AT5G44030.2 | 41.129 | 124 | 73 | 0 | 1 | 124 | 487 | 610 | 3.09e-28 | 119 |
| Msa0208430 | AT5G44030.1 | 26.769 | 325 | 227 | 7 | 143 | 462 | 690 | 1008 | 7.77e-30 | 124 |
| Msa0208430 | AT5G44030.1 | 41.129 | 124 | 73 | 0 | 1 | 124 | 458 | 581 | 3.44e-28 | 119 |
| Msa0208430 | AT2G25540.1 | 25.305 | 328 | 227 | 7 | 143 | 462 | 702 | 1019 | 7.80e-30 | 124 |
| Msa0208430 | AT2G25540.1 | 43.548 | 124 | 70 | 0 | 1 | 124 | 498 | 621 | 1.97e-28 | 119 |
Find 100 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTTCTTTGGTGGTTTA+TGG | 0.102162 | 2_1:-43531508 | Msa0208430:CDS |
| ATAAATATTGCTTGCTTCTT+TGG | 0.137497 | 2_1:-43531518 | Msa0208430:CDS |
| GCAACATCTTTAGAGGTTTC+AGG | 0.218423 | 2_1:+43535141 | None:intergenic |
| TTCTCTAAGTCGTCCTATTC+TGG | 0.230855 | 2_1:-43531420 | Msa0208430:CDS |
| GGATATAGGCCGTTGCAAAT+TGG | 0.258643 | 2_1:+43532231 | None:intergenic |
| CCTATGAGAGAAACACAAAT+TGG | 0.275541 | 2_1:-43534034 | Msa0208430:CDS |
| CCAATTTGTGTTTCTCTCAT+AGG | 0.285482 | 2_1:+43534034 | None:intergenic |
| AACAAAAGCAACATCTTTAG+AGG | 0.287887 | 2_1:+43535134 | None:intergenic |
| GCAACGGCCTATATCCTATA+TGG | 0.288599 | 2_1:-43532224 | Msa0208430:CDS |
| AGTTCAGATGACCACTTTAT+CGG | 0.331660 | 2_1:+43532353 | None:intergenic |
| AAATATAGCCCATTCACTTA+TGG | 0.354851 | 2_1:-43532311 | Msa0208430:CDS |
| CAAGGCAAAATTCACTTTAT+CGG | 0.355964 | 2_1:-43531642 | Msa0208430:CDS |
| AAACTTGAGAGTACCGTTAC+TGG | 0.362985 | 2_1:-43532479 | Msa0208430:CDS |
| GATATAGGCCGTTGCAAATT+GGG | 0.364576 | 2_1:+43532232 | None:intergenic |
| AGTGGGATTGTAAAATCAAT+TGG | 0.369244 | 2_1:-43531713 | Msa0208430:CDS |
| CTGGTGGCTCCTCGATGATT+TGG | 0.376584 | 2_1:-43531751 | Msa0208430:CDS |
| TTCGGAAGTCCAAACCAAAA+AGG | 0.385517 | 2_1:-43534863 | Msa0208430:intron |
| TCCTCAGATTTGCTTCTTGA+AGG | 0.386708 | 2_1:-43532195 | Msa0208430:CDS |
| TGATTACAGCTTAGAGTGTC+AGG | 0.390631 | 2_1:-43535261 | Msa0208430:intron |
| CGAGATACATAAACAACTAA+TGG | 0.399852 | 2_1:+43535433 | None:intergenic |
| CTAAGGTTGTGAAACATTTG+AGG | 0.415344 | 2_1:+43535105 | None:intergenic |
| TATATTGAGGTAATTTCAAC+TGG | 0.415566 | 2_1:-43531770 | Msa0208430:CDS |
| CTATGAGAGAAACACAAATT+GGG | 0.429297 | 2_1:-43534033 | Msa0208430:CDS |
| CTTGATGCTCTATACAACTT+TGG | 0.431278 | 2_1:-43534170 | Msa0208430:CDS |
| AAAGGTTAAACAATGAATAG+TGG | 0.432663 | 2_1:+43532274 | None:intergenic |
| AATATTGCTTGCTTCTTTGG+TGG | 0.448903 | 2_1:-43531515 | Msa0208430:CDS |
| CATATATGTCTTTCTTGCTA+AGG | 0.452770 | 2_1:+43535088 | None:intergenic |
| CATTACAGGTTACAGATCCT+TGG | 0.455030 | 2_1:-43531838 | Msa0208430:intron |
| GATATAATCCCCTCCAGAAT+AGG | 0.455085 | 2_1:+43531407 | None:intergenic |
| TCTGAGGAACGAATCCATAT+AGG | 0.464687 | 2_1:+43532210 | None:intergenic |
| AACGAATCCATATAGGATAT+AGG | 0.472750 | 2_1:+43532217 | None:intergenic |
| CTTGAAAGGCCATAAGTGAA+TGG | 0.474502 | 2_1:+43532302 | None:intergenic |
| CCTCAGATTTGCTTCTTGAA+GGG | 0.478015 | 2_1:-43532194 | Msa0208430:CDS |
| GAGAAAGTATATAGATAATG+AGG | 0.480925 | 2_1:+43531438 | None:intergenic |
| GGTCCAGGTCTAACCGGTAG+TGG | 0.491544 | 2_1:-43534914 | Msa0208430:CDS |
| TTGAAAGGCCATAAGTGAAT+GGG | 0.491625 | 2_1:+43532303 | None:intergenic |
| TAAGCTAAAGAAATATGAGC+AGG | 0.493122 | 2_1:-43531600 | Msa0208430:CDS |
| TTAAGAGGTCCAGGTCTAAC+CGG | 0.494171 | 2_1:-43534920 | Msa0208430:CDS |
| GTGGGATTGTAAAATCAATT+GGG | 0.497044 | 2_1:-43531712 | Msa0208430:CDS |
| AATATAATGATGAATTTGAC+TGG | 0.497197 | 2_1:+43531787 | None:intergenic |
| ACTTATATAATTTCCACTAC+CGG | 0.497654 | 2_1:+43534901 | None:intergenic |
| AGTAGAAGTGCATTACTCTT+CGG | 0.499684 | 2_1:-43534881 | Msa0208430:CDS |
| TGTGCTTACCAAGTAACAAA+AGG | 0.502993 | 2_1:+43532256 | None:intergenic |
| AATCCCTCTTTCATGTCAGT+TGG | 0.503641 | 2_1:+43532383 | None:intergenic |
| TCAAATTCATCATTATATTG+AGG | 0.507602 | 2_1:-43531783 | Msa0208430:CDS |
| TAAGGTTGTGAAACATTTGA+GGG | 0.508349 | 2_1:+43535106 | None:intergenic |
| ACAAAGTGGAAGGGAATGGA+TGG | 0.509961 | 2_1:-43534944 | Msa0208430:CDS |
| ATGGATGGATTAAGAGGTCC+AGG | 0.518984 | 2_1:-43534929 | Msa0208430:CDS |
| ATTGTGAGTAACACAATCAC+TGG | 0.521404 | 2_1:+43531539 | None:intergenic |
| TTTCTATTAGACAAAGTGGA+AGG | 0.522662 | 2_1:-43534954 | Msa0208430:intron |
| ATCTCCTCCATTGTAGAGGA+TGG | 0.527601 | 2_1:-43532454 | Msa0208430:CDS |
| GTGGCTCCTCGATGATTTGG+TGG | 0.533592 | 2_1:-43531748 | Msa0208430:CDS |
| CAATCTACGACAAGTACATA+AGG | 0.536818 | 2_1:+43535222 | None:intergenic |
| TTCTATTAGACAAAGTGGAA+GGG | 0.538234 | 2_1:-43534953 | Msa0208430:intron |
| AAGGTTAAACAATGAATAGT+GGG | 0.542914 | 2_1:+43532275 | None:intergenic |
| GGTGGAATGAACAAAGAAGT+GGG | 0.545717 | 2_1:-43531730 | Msa0208430:CDS |
| GTAATTTCTATTAGACAAAG+TGG | 0.553718 | 2_1:-43534958 | Msa0208430:intron |
| CTAAGTCGTCCTATTCTGGA+GGG | 0.554683 | 2_1:-43531416 | Msa0208430:CDS |
| TTAGACAAAGTGGAAGGGAA+TGG | 0.556621 | 2_1:-43534948 | Msa0208430:intron |
| TTGAATCTGTGAGGAACAGA+TGG | 0.556993 | 2_1:+43535400 | None:intergenic |
| GAATAGTGGGCAATCTTGAA+AGG | 0.559596 | 2_1:+43532288 | None:intergenic |
| TTTCCACTACCGGTTAGACC+TGG | 0.561413 | 2_1:+43534911 | None:intergenic |
| TGATGGTGCAGCATTGCTCA+TGG | 0.561940 | 2_1:-43531564 | Msa0208430:CDS |
| TGCTCCAACTGACATGAAAG+AGG | 0.562817 | 2_1:-43532387 | Msa0208430:CDS |
| TTTACAAGAAGCATGTGAAG+TGG | 0.562845 | 2_1:-43534066 | Msa0208430:CDS |
| ATTGAGGTAATTTCAACTGG+TGG | 0.563569 | 2_1:-43531767 | Msa0208430:CDS |
| TCTAAGTCGTCCTATTCTGG+AGG | 0.571094 | 2_1:-43531417 | Msa0208430:CDS |
| TCTGTTCCTCACAGATTCAA+AGG | 0.573369 | 2_1:-43535397 | Msa0208430:CDS |
| GATTGATTCAACCGATAAAG+TGG | 0.574825 | 2_1:-43532364 | Msa0208430:CDS |
| GGCTATCTCCTCCATTGTAG+AGG | 0.585404 | 2_1:-43532458 | Msa0208430:CDS |
| TATCTATGAAGCGGAAGAGT+GGG | 0.586068 | 2_1:-43531388 | Msa0208430:CDS |
| TGGTGGAATGAACAAAGAAG+TGG | 0.587711 | 2_1:-43531731 | Msa0208430:CDS |
| TTGATCTCCATCCTCTACAA+TGG | 0.588017 | 2_1:+43532447 | None:intergenic |
| AGGAGGAGCTCTCAATACAT+TGG | 0.593942 | 2_1:-43535377 | Msa0208430:intron |
| ATTTGAACCATGAAAAGAAG+AGG | 0.595843 | 2_1:-43531357 | Msa0208430:three_prime_UTR |
| TAAGTCGTCCTATTCTGGAG+GGG | 0.606867 | 2_1:-43531415 | Msa0208430:CDS |
| GTGTCAGGGCTAATCAGCAA+TGG | 0.607231 | 2_1:-43535246 | Msa0208430:CDS |
| ATATCTATGAAGCGGAAGAG+TGG | 0.607521 | 2_1:-43531389 | Msa0208430:CDS |
| GGGAATACCTCTATATCCAA+AGG | 0.609329 | 2_1:-43532174 | Msa0208430:intron |
| AAGGGAATGGATGGATTAAG+AGG | 0.618466 | 2_1:-43534935 | Msa0208430:CDS |
| AAAATTCACTTTATCGGACA+AGG | 0.620711 | 2_1:-43531636 | Msa0208430:CDS |
| TATGAGAGAAACACAAATTG+GGG | 0.621432 | 2_1:-43534032 | Msa0208430:CDS |
| TTTGAACCATGAAAAGAAGA+GGG | 0.624361 | 2_1:-43531356 | Msa0208430:three_prime_UTR |
| ATCTCCATCCTCTACAATGG+AGG | 0.632406 | 2_1:+43532450 | None:intergenic |
| CCCTTCAAGAAGCAAATCTG+AGG | 0.636796 | 2_1:+43532194 | None:intergenic |
| AAGCTAAAGAAATATGAGCA+GGG | 0.640748 | 2_1:-43531599 | Msa0208430:CDS |
| GGAGCACATCCTAAGAAGCA+TGG | 0.641531 | 2_1:+43532404 | None:intergenic |
| AAACACAAATTGGGGTAACG+AGG | 0.644444 | 2_1:-43534024 | Msa0208430:intron |
| GCTCCAACTGACATGAAAGA+GGG | 0.649039 | 2_1:-43532386 | Msa0208430:CDS |
| ACTGTAAACACTATAAACCA+AGG | 0.655731 | 2_1:+43531821 | None:intergenic |
| GATTACAGCTTAGAGTGTCA+GGG | 0.657273 | 2_1:-43535260 | Msa0208430:intron |
| TATGGAGACTACTCAATGTG+AGG | 0.662737 | 2_1:-43531490 | Msa0208430:CDS |
| AAGCACAACCCAATTTGCAA+CGG | 0.664325 | 2_1:-43532240 | Msa0208430:CDS |
| ACATATATGATAGTCAGACT+AGG | 0.669035 | 2_1:-43535074 | Msa0208430:CDS |
| AGGGGATTATATCTATGAAG+CGG | 0.671490 | 2_1:-43531397 | Msa0208430:CDS |
| TTCATTCCACCAAATCATCG+AGG | 0.679487 | 2_1:+43531742 | None:intergenic |
| ATGGAGGAGATAGCCAGTAA+CGG | 0.694391 | 2_1:+43532466 | None:intergenic |
| GCTCCTCCTTTGAATCTGTG+AGG | 0.696490 | 2_1:+43535391 | None:intergenic |
| GTTCCTCACAGATTCAAAGG+AGG | 0.708338 | 2_1:-43535394 | Msa0208430:CDS |
| GAATCACTAAAAGCATTACG+TGG | 0.753334 | 2_1:-43534128 | Msa0208430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAAAGAAAATTAAG+AGG | + | chr2_1:43531366-43531385 | None:intergenic | 10.0% |
| !! | AATTTATTATATTATACACA+GGG | + | chr2_1:43532309-43532328 | None:intergenic | 10.0% |
| !! | AAATTTATTATATTATACAC+AGG | + | chr2_1:43532310-43532329 | None:intergenic | 10.0% |
| !! | CATAATTATATAATTTCATT+TGG | + | chr2_1:43532767-43532786 | None:intergenic | 10.0% |
| !! | TTGAATTATAGTTAAATTTA+TGG | - | chr2_1:43533031-43533050 | Msa0208430:intron | 10.0% |
| !!! | ATTAATTTATTTTACATTAC+AGG | - | chr2_1:43534833-43534852 | Msa0208430:intron | 10.0% |
| !!! | AGATAAATAGCTTAAAATTT+TGG | + | chr2_1:43531657-43531676 | None:intergenic | 15.0% |
| !!! | AAAAATTATTAGTCTTGTTT+TGG | + | chr2_1:43532189-43532208 | None:intergenic | 15.0% |
| !! | ACTTTATTATATTATACACA+GGG | + | chr2_1:43532277-43532296 | None:intergenic | 15.0% |
| !! | ATTTATTATATTATACACAG+GGG | + | chr2_1:43532308-43532327 | None:intergenic | 15.0% |
| !!! | ATGTGAATCATAATTTTTTT+AGG | - | chr2_1:43532838-43532857 | Msa0208430:intron | 15.0% |
| !!! | TGTGAATCATAATTTTTTTA+GGG | - | chr2_1:43532839-43532858 | Msa0208430:intron | 15.0% |
| !! | AAAAATTTATGGCTAAATTT+AGG | - | chr2_1:43533152-43533171 | Msa0208430:intron | 15.0% |
| !! | AAAATTTATGGCTAAATTTA+GGG | - | chr2_1:43533153-43533172 | Msa0208430:intron | 15.0% |
| !! | AATCTATTGTAAATAAAACT+AGG | - | chr2_1:43533324-43533343 | Msa0208430:intron | 15.0% |
| !! | ATCTATTGTAAATAAAACTA+GGG | - | chr2_1:43533325-43533344 | Msa0208430:intron | 15.0% |
| !! | GTAATTAGTTAGTATTATTA+AGG | - | chr2_1:43533660-43533679 | Msa0208430:intron | 15.0% |
| !! | AATATCAGTCAAATTAATAA+CGG | + | chr2_1:43534160-43534179 | None:intergenic | 15.0% |
| !! | GAATTCTAACAAATATTCTT+AGG | - | chr2_1:43531874-43531893 | Msa0208430:intron | 20.0% |
| !!! | TATTCTTAGGATATTGTTTT+AGG | - | chr2_1:43531887-43531906 | Msa0208430:intron | 20.0% |
| !!! | AAGACTAATAATTTTTTGTC+CGG | - | chr2_1:43532193-43532212 | Msa0208430:CDS | 20.0% |
| !! | CTTTATTATATTATACACAG+GGG | + | chr2_1:43532276-43532295 | None:intergenic | 20.0% |
| !! | CACTTTATTATATTATACAC+AGG | + | chr2_1:43532278-43532297 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATTTATAATGGC+AGG | - | chr2_1:43532482-43532501 | Msa0208430:CDS | 20.0% |
| !!! | TTTTTGAATTTATAATGGCA+GGG | - | chr2_1:43532483-43532502 | Msa0208430:CDS | 20.0% |
| !! | AATTTAAATTCACACCTTAT+GGG | + | chr2_1:43532876-43532895 | None:intergenic | 20.0% |
| !! | AAATTTAAATTCACACCTTA+TGG | + | chr2_1:43532877-43532896 | None:intergenic | 20.0% |
| !! | AGTAAAATTAAAGAGATCAA+AGG | + | chr2_1:43532914-43532933 | None:intergenic | 20.0% |
| !! | TAACAAAATATTAAAGCTGA+TGG | + | chr2_1:43532982-43533001 | None:intergenic | 20.0% |
| !! | TTAAATTTATGGCTAGAATT+TGG | - | chr2_1:43533042-43533061 | Msa0208430:intron | 20.0% |
| !! | ACACAAGGAAAAAAAATTTA+TGG | - | chr2_1:43533141-43533160 | Msa0208430:intron | 20.0% |
| !! | TAAAATAAATCAATAACAGC+AGG | - | chr2_1:43533438-43533457 | Msa0208430:intron | 20.0% |
| !! | CTATATATTTATCACATTGA+TGG | + | chr2_1:43533636-43533655 | None:intergenic | 20.0% |
| !! | CATCAATGTGATAAATATAT+AGG | - | chr2_1:43533634-43533653 | Msa0208430:intron | 20.0% |
| !! | AATGTGATAAATATATAGGT+GGG | - | chr2_1:43533638-43533657 | Msa0208430:intron | 20.0% |
| !! | ATAATTGTCTTCATCAAATA+AGG | - | chr2_1:43533710-43533729 | Msa0208430:intron | 20.0% |
| !! | TAATTGTCTTCATCAAATAA+GGG | - | chr2_1:43533711-43533730 | Msa0208430:intron | 20.0% |
| !! | TAGAAAAATATGATCAAAGT+AGG | + | chr2_1:43533896-43533915 | None:intergenic | 20.0% |
| !! | ATATCAGTCAAATTAATAAC+GGG | + | chr2_1:43534159-43534178 | None:intergenic | 20.0% |
| !!! | ATTTATCCATATTTTACCTT+TGG | + | chr2_1:43534530-43534549 | None:intergenic | 20.0% |
| !!! | AAAAACTTATGAACACATTT+TGG | - | chr2_1:43534595-43534614 | Msa0208430:intron | 20.0% |
| !! | AATTAATAGAAGTAACATGT+TGG | + | chr2_1:43534820-43534839 | None:intergenic | 20.0% |
| !! | AATATAATGATGAATTTGAC+TGG | + | chr2_1:43534901-43534920 | None:intergenic | 20.0% |
| !! | TCAAATTCATCATTATATTG+AGG | - | chr2_1:43534902-43534921 | Msa0208430:CDS | 20.0% |
| !! | AAACAACGAAAAAAAAGTTT+GGG | - | chr2_1:43535015-43535034 | Msa0208430:intron | 20.0% |
| !!! | AGTTTCAATTGTTTTTAAAG+TGG | - | chr2_1:43535435-43535454 | Msa0208430:CDS | 20.0% |
| ! | GTAATTTCTATTAGACAAAG+TGG | - | chr2_1:43531727-43531746 | Msa0208430:CDS | 25.0% |
| ! | ACTTATATAATTTCCACTAC+CGG | + | chr2_1:43531787-43531806 | None:intergenic | 25.0% |
| !!! | TAATTTGTACCTTTTTGGTT+TGG | + | chr2_1:43531834-43531853 | None:intergenic | 25.0% |
| !!! | TGTAGTAATTTGTACCTTTT+TGG | + | chr2_1:43531839-43531858 | None:intergenic | 25.0% |
| ! | AATGAATGTCTTAAGATCAT+TGG | + | chr2_1:43531997-43532016 | None:intergenic | 25.0% |
| !!! | AATTATTAGTCTTGTTTTGG+TGG | + | chr2_1:43532186-43532205 | None:intergenic | 25.0% |
| !!! | AGACTAATAATTTTTTGTCC+GGG | - | chr2_1:43532194-43532213 | Msa0208430:CDS | 25.0% |
| !! | TTTTGAATTTATAATGGCAG+GGG | - | chr2_1:43532484-43532503 | Msa0208430:CDS | 25.0% |
| !!! | TGACTAGAGATTTTTTTTGA+AGG | - | chr2_1:43533092-43533111 | Msa0208430:intron | 25.0% |
| ! | TTGTAAATAAAACTAGGGTT+AGG | - | chr2_1:43533330-43533349 | Msa0208430:intron | 25.0% |
| ! | CTTCTACCAAAAATGATTAT+GGG | + | chr2_1:43533360-43533379 | None:intergenic | 25.0% |
| ! | TCTTCTACCAAAAATGATTA+TGG | + | chr2_1:43533361-43533380 | None:intergenic | 25.0% |
| !! | TGGAATTGGGTTTAAATTTT+TGG | + | chr2_1:43533478-43533497 | None:intergenic | 25.0% |
| ! | CAATGTGATAAATATATAGG+TGG | - | chr2_1:43533637-43533656 | Msa0208430:intron | 25.0% |
| ! | TGAAGACAATTATAATGAGA+CGG | + | chr2_1:43533703-43533722 | None:intergenic | 25.0% |
| ! | ACGTGAAAACTAAAATGAAA+CGG | - | chr2_1:43533805-43533824 | Msa0208430:intron | 25.0% |
| ! | AATGAAAGTTTAATGTGAGT+TGG | + | chr2_1:43534109-43534128 | None:intergenic | 25.0% |
| !! | TTAATTTGACTGATATTCAC+AGG | - | chr2_1:43534163-43534182 | Msa0208430:CDS | 25.0% |
| ! | AAGGTTAAACAATGAATAGT+GGG | + | chr2_1:43534413-43534432 | None:intergenic | 25.0% |
| ! | AAAGGTTAAACAATGAATAG+TGG | + | chr2_1:43534414-43534433 | None:intergenic | 25.0% |
| !! | TTGTTTAACCTTTTGTTACT+TGG | - | chr2_1:43534421-43534440 | Msa0208430:intron | 25.0% |
| !! | TATTTTACCTTTGGATATAG+AGG | + | chr2_1:43534521-43534540 | None:intergenic | 25.0% |
| ! | CTATATCCAAAGGTAAAATA+TGG | - | chr2_1:43534521-43534540 | Msa0208430:intron | 25.0% |
| ! | TCAAATAAGTCAATTCTAAC+AGG | - | chr2_1:43534746-43534765 | Msa0208430:intron | 25.0% |
| ! | TATATTGAGGTAATTTCAAC+TGG | - | chr2_1:43534915-43534934 | Msa0208430:CDS | 25.0% |
| ! | GAAACAACGAAAAAAAAGTT+TGG | - | chr2_1:43535014-43535033 | Msa0208430:intron | 25.0% |
| ! | ATAAATATTGCTTGCTTCTT+TGG | - | chr2_1:43535167-43535186 | Msa0208430:CDS | 25.0% |
| !!! | AGGAATTTTGATGAAATGTT+TGG | - | chr2_1:43535215-43535234 | Msa0208430:CDS | 25.0% |
| !! | GAGAAAGTATATAGATAATG+AGG | + | chr2_1:43535250-43535269 | None:intergenic | 25.0% |
| CGAGATACATAAACAACTAA+TGG | + | chr2_1:43531255-43531274 | None:intergenic | 30.0% | |
| ! | AAAAAAGCACATGGATTGTT+TGG | + | chr2_1:43531518-43531537 | None:intergenic | 30.0% |
| AACAAAAGCAACATCTTTAG+AGG | + | chr2_1:43531554-43531573 | None:intergenic | 30.0% | |
| TAAGGTTGTGAAACATTTGA+GGG | + | chr2_1:43531582-43531601 | None:intergenic | 30.0% | |
| CATATATGTCTTTCTTGCTA+AGG | + | chr2_1:43531600-43531619 | None:intergenic | 30.0% | |
| ACATATATGATAGTCAGACT+AGG | - | chr2_1:43531611-43531630 | Msa0208430:CDS | 30.0% | |
| TTTCTATTAGACAAAGTGGA+AGG | - | chr2_1:43531731-43531750 | Msa0208430:CDS | 30.0% | |
| TTCTATTAGACAAAGTGGAA+GGG | - | chr2_1:43531732-43531751 | Msa0208430:CDS | 30.0% | |
| TTAGAATTCTCGAAACTGTA+AGG | + | chr2_1:43531863-43531882 | None:intergenic | 30.0% | |
| TAGAGATTCTATTTCAAACC+CGG | + | chr2_1:43532215-43532234 | None:intergenic | 30.0% | |
| ATTTATGTTACCTTCACCAA+TGG | - | chr2_1:43532372-43532391 | Msa0208430:CDS | 30.0% | |
| ! | ATTGATTTCACCATATCCAT+TGG | + | chr2_1:43532391-43532410 | None:intergenic | 30.0% |
| CTATGAGAGAAACACAAATT+GGG | - | chr2_1:43532652-43532671 | Msa0208430:intron | 30.0% | |
| TATGAGAGAAACACAAATTG+GGG | - | chr2_1:43532653-43532672 | Msa0208430:intron | 30.0% | |
| CAATCCATTGAAAATTGAAC+GGG | + | chr2_1:43533227-43533246 | None:intergenic | 30.0% | |
| CCAATCCATTGAAAATTGAA+CGG | + | chr2_1:43533228-43533247 | None:intergenic | 30.0% | |
| !! | CGTTCAATTTTCAATGGATT+GGG | - | chr2_1:43533226-43533245 | Msa0208430:intron | 30.0% |
| TAAATAAAACTAGGGTTAGG+TGG | - | chr2_1:43533333-43533352 | Msa0208430:intron | 30.0% | |
| AAATAAAACTAGGGTTAGGT+GGG | - | chr2_1:43533334-43533353 | Msa0208430:intron | 30.0% | |
| ! | TTTTGGTAGAAGATCATCAT+AGG | - | chr2_1:43533368-43533387 | Msa0208430:intron | 30.0% |
| ATAAATCAATAACAGCAGGT+CGG | - | chr2_1:43533442-43533461 | Msa0208430:intron | 30.0% | |
| TGATGGTAAAATTTAGCTAG+CGG | + | chr2_1:43533619-43533638 | None:intergenic | 30.0% | |
| GAAGACAATTATAATGAGAC+GGG | + | chr2_1:43533702-43533721 | None:intergenic | 30.0% | |
| TTCAAATGAGTCATCTATTG+CGG | + | chr2_1:43533853-43533872 | None:intergenic | 30.0% | |
| TTAAGCTCAAAGTTATGCAT+TGG | - | chr2_1:43534019-43534038 | Msa0208430:intron | 30.0% | |
| TTGTGTCAAGTATTATGAGA+TGG | - | chr2_1:43534060-43534079 | Msa0208430:CDS | 30.0% | |
| !! | GTTTAATGTGAGTTGGATTT+TGG | + | chr2_1:43534102-43534121 | None:intergenic | 30.0% |
| AAATATAGCCCATTCACTTA+TGG | - | chr2_1:43534374-43534393 | Msa0208430:intron | 30.0% | |
| AACGAATCCATATAGGATAT+AGG | + | chr2_1:43534471-43534490 | None:intergenic | 30.0% | |
| !! | ACTTATGAACACATTTTGGT+TGG | - | chr2_1:43534599-43534618 | Msa0208430:intron | 30.0% |
| !! | TTTGAAATGTGCTCGTTTTA+AGG | - | chr2_1:43534644-43534663 | Msa0208430:intron | 30.0% |
| ATTCTAACAGGAATTCTAAC+AGG | - | chr2_1:43534758-43534777 | Msa0208430:intron | 30.0% | |
| ACTGTAAACACTATAAACCA+AGG | + | chr2_1:43534867-43534886 | None:intergenic | 30.0% | |
| AGTGGGATTGTAAAATCAAT+TGG | - | chr2_1:43534972-43534991 | Msa0208430:intron | 30.0% | |
| GTGGGATTGTAAAATCAATT+GGG | - | chr2_1:43534973-43534992 | Msa0208430:intron | 30.0% | |
| !! | AAAAAAGTTTGGGTTGAACA+AGG | - | chr2_1:43535025-43535044 | Msa0208430:intron | 30.0% |
| CAAGGCAAAATTCACTTTAT+CGG | - | chr2_1:43535043-43535062 | Msa0208430:intron | 30.0% | |
| AAAATTCACTTTATCGGACA+AGG | - | chr2_1:43535049-43535068 | Msa0208430:intron | 30.0% | |
| TAAGCTAAAGAAATATGAGC+AGG | - | chr2_1:43535085-43535104 | Msa0208430:CDS | 30.0% | |
| AAGCTAAAGAAATATGAGCA+GGG | - | chr2_1:43535086-43535105 | Msa0208430:CDS | 30.0% | |
| !! | CAGGGTAAGTTTAATTTTGA+TGG | - | chr2_1:43535104-43535123 | Msa0208430:CDS | 30.0% |
| ATTTGAACCATGAAAAGAAG+AGG | - | chr2_1:43535328-43535347 | Msa0208430:intron | 30.0% | |
| TTTGAACCATGAAAAGAAGA+GGG | - | chr2_1:43535329-43535348 | Msa0208430:intron | 30.0% | |
| CAATCTACGACAAGTACATA+AGG | + | chr2_1:43531466-43531485 | None:intergenic | 35.0% | |
| ! | AGGATCAAGAAAAAAGCACA+TGG | + | chr2_1:43531527-43531546 | None:intergenic | 35.0% |
| CTAAGGTTGTGAAACATTTG+AGG | + | chr2_1:43531583-43531602 | None:intergenic | 35.0% | |
| ! | AGTAGAAGTGCATTACTCTT+CGG | - | chr2_1:43531804-43531823 | Msa0208430:CDS | 35.0% |
| ! | TAAGCTTATCTCAGTTGGTA+GGG | - | chr2_1:43532123-43532142 | Msa0208430:intron | 35.0% |
| GACAATGCATAATATATGCG+AGG | - | chr2_1:43532145-43532164 | Msa0208430:intron | 35.0% | |
| !!! | TATTAGTCTTGTTTTGGTGG+TGG | + | chr2_1:43532183-43532202 | None:intergenic | 35.0% |
| GGTAAGTAACACAATTGGTT+TGG | + | chr2_1:43532255-43532274 | None:intergenic | 35.0% | |
| CTTGATGCTCTATACAACTT+TGG | - | chr2_1:43532515-43532534 | Msa0208430:intron | 35.0% | |
| !! | GAATCACTAAAAGCATTACG+TGG | - | chr2_1:43532557-43532576 | Msa0208430:intron | 35.0% |
| ! | TTTACAAGAAGCATGTGAAG+TGG | - | chr2_1:43532619-43532638 | Msa0208430:intron | 35.0% |
| CCAATTTGTGTTTCTCTCAT+AGG | + | chr2_1:43532654-43532673 | None:intergenic | 35.0% | |
| CCTATGAGAGAAACACAAAT+TGG | - | chr2_1:43532651-43532670 | Msa0208430:intron | 35.0% | |
| ! | GCTAAATTTAGGGCTATACA+CGG | - | chr2_1:43533163-43533182 | Msa0208430:intron | 35.0% |
| ! | CTAAATTTAGGGCTATACAC+GGG | - | chr2_1:43533164-43533183 | Msa0208430:intron | 35.0% |
| ! | CATTGAAAATTGAACGGGTT+GGG | + | chr2_1:43533222-43533241 | None:intergenic | 35.0% |
| ! | CCGTTCAATTTTCAATGGAT+TGG | - | chr2_1:43533225-43533244 | Msa0208430:intron | 35.0% |
| !! | GGTTTAAATTTTTGGACCCA+TGG | + | chr2_1:43533470-43533489 | None:intergenic | 35.0% |
| !! | CAAAGTTTGGTTCTGGAATT+GGG | + | chr2_1:43533491-43533510 | None:intergenic | 35.0% |
| CTTGGGTTCAGATAATTAGT+GGG | - | chr2_1:43533540-43533559 | Msa0208430:intron | 35.0% | |
| !! | GTTCAGATAATTAGTGGGTT+GGG | - | chr2_1:43533545-43533564 | Msa0208430:intron | 35.0% |
| TCAAATGAGTCATCTATTGC+GGG | + | chr2_1:43533852-43533871 | None:intergenic | 35.0% | |
| TGTCAAGTATTATGAGATGG+TGG | - | chr2_1:43534063-43534082 | Msa0208430:CDS | 35.0% | |
| TTTGACTGATATTCACAGGT+TGG | - | chr2_1:43534167-43534186 | Msa0208430:CDS | 35.0% | |
| !! | CTAAGAAGCATGGTCTTTTT+GGG | + | chr2_1:43534274-43534293 | None:intergenic | 35.0% |
| ! | GATTGATTCAACCGATAAAG+TGG | - | chr2_1:43534321-43534340 | Msa0208430:intron | 35.0% |
| AGTTCAGATGACCACTTTAT+CGG | + | chr2_1:43534335-43534354 | None:intergenic | 35.0% | |
| TTGAAAGGCCATAAGTGAAT+GGG | + | chr2_1:43534385-43534404 | None:intergenic | 35.0% | |
| TGTGCTTACCAAGTAACAAA+AGG | + | chr2_1:43534432-43534451 | None:intergenic | 35.0% | |
| !!! | TGAACACATTTTGGTTGGTT+TGG | - | chr2_1:43534604-43534623 | Msa0208430:intron | 35.0% |
| TAACAGGAATTCTAACAGGA+TGG | - | chr2_1:43534762-43534781 | Msa0208430:intron | 35.0% | |
| ATTGAGGTAATTTCAACTGG+TGG | - | chr2_1:43534918-43534937 | Msa0208430:CDS | 35.0% | |
| ATTGTGAGTAACACAATCAC+TGG | + | chr2_1:43535149-43535168 | None:intergenic | 35.0% | |
| AATATTGCTTGCTTCTTTGG+TGG | - | chr2_1:43535170-43535189 | Msa0208430:CDS | 35.0% | |
| AGGGGATTATATCTATGAAG+CGG | - | chr2_1:43535288-43535307 | Msa0208430:intron | 35.0% | |
| ! | ACATATCCCTCTTCTTTTCA+TGG | + | chr2_1:43535338-43535357 | None:intergenic | 35.0% |
| TTGAATCTGTGAGGAACAGA+TGG | + | chr2_1:43531288-43531307 | None:intergenic | 40.0% | |
| TCTGTTCCTCACAGATTCAA+AGG | - | chr2_1:43531288-43531307 | Msa0208430:three_prime_UTR | 40.0% | |
| ! | TGATTACAGCTTAGAGTGTC+AGG | - | chr2_1:43531424-43531443 | Msa0208430:CDS | 40.0% |
| ! | GATTACAGCTTAGAGTGTCA+GGG | - | chr2_1:43531425-43531444 | Msa0208430:CDS | 40.0% |
| ! | GCAACATCTTTAGAGGTTTC+AGG | + | chr2_1:43531547-43531566 | None:intergenic | 40.0% |
| !! | TCAGACTAGGACTGCTTTTA+CGG | - | chr2_1:43531624-43531643 | Msa0208430:CDS | 40.0% |
| TTAGACAAAGTGGAAGGGAA+TGG | - | chr2_1:43531737-43531756 | Msa0208430:CDS | 40.0% | |
| !! | AAGGGAATGGATGGATTAAG+AGG | - | chr2_1:43531750-43531769 | Msa0208430:CDS | 40.0% |
| TTCGGAAGTCCAAACCAAAA+AGG | - | chr2_1:43531822-43531841 | Msa0208430:CDS | 40.0% | |
| CTTCGTAAGCTTATCTCAGT+TGG | - | chr2_1:43532118-43532137 | Msa0208430:intron | 40.0% | |
| GTAAGCTTATCTCAGTTGGT+AGG | - | chr2_1:43532122-43532141 | Msa0208430:intron | 40.0% | |
| ACAGGGGTAAGTAACACAAT+TGG | + | chr2_1:43532260-43532279 | None:intergenic | 40.0% | |
| GTTACCTTCACCAATGGATA+TGG | - | chr2_1:43532378-43532397 | Msa0208430:CDS | 40.0% | |
| TTCACCATATCCATTGGTGA+AGG | + | chr2_1:43532385-43532404 | None:intergenic | 40.0% | |
| TGGTGAAATCAATCGTAGAG+AGG | - | chr2_1:43532398-43532417 | Msa0208430:CDS | 40.0% | |
| AAACACAAATTGGGGTAACG+AGG | - | chr2_1:43532661-43532680 | Msa0208430:intron | 40.0% | |
| TTTCATGCGCCAATGAAAGT+TGG | - | chr2_1:43532801-43532820 | Msa0208430:intron | 40.0% | |
| GATATGCGTCAACAAACACA+AGG | - | chr2_1:43533126-43533145 | Msa0208430:intron | 40.0% | |
| !! | AACGGGTTGGGTAATTGATT+TGG | + | chr2_1:43533210-43533229 | None:intergenic | 40.0% |
| CCATTGAAAATTGAACGGGT+TGG | + | chr2_1:43533223-43533242 | None:intergenic | 40.0% | |
| ! | CCAACCCGTTCAATTTTCAA+TGG | - | chr2_1:43533220-43533239 | Msa0208430:intron | 40.0% |
| !! | GCAAAGTTTGGTTCTGGAAT+TGG | + | chr2_1:43533492-43533511 | None:intergenic | 40.0% |
| ATTCCAGAACCAAACTTTGC+TGG | - | chr2_1:43533492-43533511 | Msa0208430:intron | 40.0% | |
| AGATTGGATCTGCAAATGCT+TGG | - | chr2_1:43533522-43533541 | Msa0208430:intron | 40.0% | |
| GATTGGATCTGCAAATGCTT+GGG | - | chr2_1:43533523-43533542 | Msa0208430:intron | 40.0% | |
| GCTTGGGTTCAGATAATTAG+TGG | - | chr2_1:43533539-43533558 | Msa0208430:intron | 40.0% | |
| ! | GGTTCAGATAATTAGTGGGT+TGG | - | chr2_1:43533544-43533563 | Msa0208430:intron | 40.0% |
| ! | TAGGTGCAAGTCGATTTACA+CGG | + | chr2_1:43533584-43533603 | None:intergenic | 40.0% |
| TAATGAGACGGGTGGAATAT+AGG | + | chr2_1:43533691-43533710 | None:intergenic | 40.0% | |
| GACAATTATAATGAGACGGG+TGG | + | chr2_1:43533699-43533718 | None:intergenic | 40.0% | |
| ! | ATGCATTGGCATGCGTAATA+AGG | - | chr2_1:43534033-43534052 | Msa0208430:CDS | 40.0% |
| !! | AAACTTGAGAGTACCGTTAC+TGG | - | chr2_1:43534206-43534225 | Msa0208430:intron | 40.0% |
| TTGATCTCCATCCTCTACAA+TGG | + | chr2_1:43534241-43534260 | None:intergenic | 40.0% | |
| !! | CCTAAGAAGCATGGTCTTTT+TGG | + | chr2_1:43534275-43534294 | None:intergenic | 40.0% |
| CCAAAAAGACCATGCTTCTT+AGG | - | chr2_1:43534272-43534291 | Msa0208430:intron | 40.0% | |
| AATCCCTCTTTCATGTCAGT+TGG | + | chr2_1:43534305-43534324 | None:intergenic | 40.0% | |
| CTTGAAAGGCCATAAGTGAA+TGG | + | chr2_1:43534386-43534405 | None:intergenic | 40.0% | |
| !! | GAATAGTGGGCAATCTTGAA+AGG | + | chr2_1:43534400-43534419 | None:intergenic | 40.0% |
| AAGCACAACCCAATTTGCAA+CGG | - | chr2_1:43534445-43534464 | Msa0208430:intron | 40.0% | |
| GATATAGGCCGTTGCAAATT+GGG | + | chr2_1:43534456-43534475 | None:intergenic | 40.0% | |
| TCTGAGGAACGAATCCATAT+AGG | + | chr2_1:43534478-43534497 | None:intergenic | 40.0% | |
| ! | TCCTCAGATTTGCTTCTTGA+AGG | - | chr2_1:43534490-43534509 | Msa0208430:intron | 40.0% |
| ! | CCTCAGATTTGCTTCTTGAA+GGG | - | chr2_1:43534491-43534510 | Msa0208430:intron | 40.0% |
| GGGAATACCTCTATATCCAA+AGG | - | chr2_1:43534511-43534530 | Msa0208430:intron | 40.0% | |
| !!! | ACACATTTTGGTTGGTTTGG+TGG | - | chr2_1:43534607-43534626 | Msa0208430:intron | 40.0% |
| CATTACAGGTTACAGATCCT+TGG | - | chr2_1:43534847-43534866 | Msa0208430:intron | 40.0% | |
| TTCATTCCACCAAATCATCG+AGG | + | chr2_1:43534946-43534965 | None:intergenic | 40.0% | |
| TGGTGGAATGAACAAAGAAG+TGG | - | chr2_1:43534954-43534973 | Msa0208430:intron | 40.0% | |
| GGTGGAATGAACAAAGAAGT+GGG | - | chr2_1:43534955-43534974 | Msa0208430:intron | 40.0% | |
| ! | CTTGCTTCTTTGGTGGTTTA+TGG | - | chr2_1:43535177-43535196 | Msa0208430:CDS | 40.0% |
| TATGGAGACTACTCAATGTG+AGG | - | chr2_1:43535195-43535214 | Msa0208430:CDS | 40.0% | |
| TTCTCTAAGTCGTCCTATTC+TGG | - | chr2_1:43535265-43535284 | Msa0208430:intron | 40.0% | |
| GATATAATCCCCTCCAGAAT+AGG | + | chr2_1:43535281-43535300 | None:intergenic | 40.0% | |
| ATATCTATGAAGCGGAAGAG+TGG | - | chr2_1:43535296-43535315 | Msa0208430:intron | 40.0% | |
| TATCTATGAAGCGGAAGAGT+GGG | - | chr2_1:43535297-43535316 | Msa0208430:intron | 40.0% | |
| GTTCCTCACAGATTCAAAGG+AGG | - | chr2_1:43531291-43531310 | Msa0208430:three_prime_UTR | 45.0% | |
| AGGAGGAGCTCTCAATACAT+TGG | - | chr2_1:43531308-43531327 | Msa0208430:three_prime_UTR | 45.0% | |
| ACAAAGTGGAAGGGAATGGA+TGG | - | chr2_1:43531741-43531760 | Msa0208430:CDS | 45.0% | |
| !! | ATGGATGGATTAAGAGGTCC+AGG | - | chr2_1:43531756-43531775 | Msa0208430:CDS | 45.0% |
| TTAAGAGGTCCAGGTCTAAC+CGG | - | chr2_1:43531765-43531784 | Msa0208430:CDS | 45.0% | |
| TATATGCGAGGTTCGAACCT+CGG | - | chr2_1:43532157-43532176 | Msa0208430:intron | 45.0% | |
| ! | TGCGCCAATGAAAGTTGGTT+CGG | - | chr2_1:43532806-43532825 | Msa0208430:intron | 45.0% |
| CCATCCGAACCAACTTTCAT+TGG | + | chr2_1:43532813-43532832 | None:intergenic | 45.0% | |
| !! | CCAATGAAAGTTGGTTCGGA+TGG | - | chr2_1:43532810-43532829 | Msa0208430:intron | 45.0% |
| GGGAGTGAATCATACCCATA+AGG | - | chr2_1:43532859-43532878 | Msa0208430:intron | 45.0% | |
| ! | ATTTAGGGCTATACACGGGT+TGG | - | chr2_1:43533168-43533187 | Msa0208430:intron | 45.0% |
| ! | TTTAGGGCTATACACGGGTT+GGG | - | chr2_1:43533169-43533188 | Msa0208430:intron | 45.0% |
| ! | GGTGGGCCCATAATCATTTT+TGG | - | chr2_1:43533351-43533370 | Msa0208430:intron | 45.0% |
| ! | CAACCAGCAAAGTTTGGTTC+TGG | + | chr2_1:43533498-43533517 | None:intergenic | 45.0% |
| CTAGCGGTGATCAGATTCAT+AGG | + | chr2_1:43533603-43533622 | None:intergenic | 45.0% | |
| ATGAGTCATCTATTGCGGGA+CGG | + | chr2_1:43533848-43533867 | None:intergenic | 45.0% | |
| ATGGAGGAGATAGCCAGTAA+CGG | + | chr2_1:43534222-43534241 | None:intergenic | 45.0% | |
| ATCTCCTCCATTGTAGAGGA+TGG | - | chr2_1:43534231-43534250 | Msa0208430:intron | 45.0% | |
| ATCTCCATCCTCTACAATGG+AGG | + | chr2_1:43534238-43534257 | None:intergenic | 45.0% | |
| TGCTCCAACTGACATGAAAG+AGG | - | chr2_1:43534298-43534317 | Msa0208430:intron | 45.0% | |
| GCTCCAACTGACATGAAAGA+GGG | - | chr2_1:43534299-43534318 | Msa0208430:intron | 45.0% | |
| GGATATAGGCCGTTGCAAAT+TGG | + | chr2_1:43534457-43534476 | None:intergenic | 45.0% | |
| GCAACGGCCTATATCCTATA+TGG | - | chr2_1:43534461-43534480 | Msa0208430:intron | 45.0% | |
| CCCTTCAAGAAGCAAATCTG+AGG | + | chr2_1:43534494-43534513 | None:intergenic | 45.0% | |
| TCTAAGTCGTCCTATTCTGG+AGG | - | chr2_1:43535268-43535287 | Msa0208430:intron | 45.0% | |
| CTAAGTCGTCCTATTCTGGA+GGG | - | chr2_1:43535269-43535288 | Msa0208430:intron | 45.0% | |
| ! | TAAGTCGTCCTATTCTGGAG+GGG | - | chr2_1:43535270-43535289 | Msa0208430:intron | 45.0% |
| !!! | TTTTTTTTTTGAATTTATAA+TGG | - | chr2_1:43532478-43532497 | Msa0208430:CDS | 5.0% |
| !!! | TAATAATTTTATTAAAATGT+GGG | + | chr2_1:43533264-43533283 | None:intergenic | 5.0% |
| !!! | ATAATAATTTTATTAAAATG+TGG | + | chr2_1:43533265-43533284 | None:intergenic | 5.0% |
| !!! | TAAATTTTTTAAAAAAATTG+TGG | - | chr2_1:43533290-43533309 | Msa0208430:intron | 5.0% |
| GCTCCTCCTTTGAATCTGTG+AGG | + | chr2_1:43531297-43531316 | None:intergenic | 50.0% | |
| GTGTCAGGGCTAATCAGCAA+TGG | - | chr2_1:43531439-43531458 | Msa0208430:CDS | 50.0% | |
| ! | TTTCCACTACCGGTTAGACC+TGG | + | chr2_1:43531777-43531796 | None:intergenic | 50.0% |
| !! | GGGTTGGGTTGGAACAAGTT+TGG | - | chr2_1:43533184-43533203 | Msa0208430:intron | 50.0% |
| ATAACAGCAGGTCGGATCCA+TGG | - | chr2_1:43533450-43533469 | Msa0208430:intron | 50.0% | |
| TAACAGCAGGTCGGATCCAT+GGG | - | chr2_1:43533451-43533470 | Msa0208430:intron | 50.0% | |
| CTGCTGCAACCAGCAAAGTT+TGG | + | chr2_1:43533504-43533523 | None:intergenic | 50.0% | |
| ! | CTTTGCTGGTTGCAGCAGAT+TGG | - | chr2_1:43533506-43533525 | Msa0208430:intron | 50.0% |
| GGCTATCTCCTCCATTGTAG+AGG | - | chr2_1:43534227-43534246 | Msa0208430:intron | 50.0% | |
| GGAGCACATCCTAAGAAGCA+TGG | + | chr2_1:43534284-43534303 | None:intergenic | 50.0% | |
| ! | TGATGGTGCAGCATTGCTCA+TGG | - | chr2_1:43535121-43535140 | Msa0208430:CDS | 50.0% |
| !!! | TCTTGTTTTGGTGGTGGCCG+AGG | + | chr2_1:43532177-43532196 | None:intergenic | 55.0% |
| GTCATCTATTGCGGGACGGA+GGG | + | chr2_1:43533844-43533863 | None:intergenic | 55.0% | |
| AGTCATCTATTGCGGGACGG+AGG | + | chr2_1:43533845-43533864 | None:intergenic | 55.0% | |
| CTGGTGGCTCCTCGATGATT+TGG | - | chr2_1:43534934-43534953 | Msa0208430:CDS | 55.0% | |
| ! | GTGGCTCCTCGATGATTTGG+TGG | - | chr2_1:43534937-43534956 | Msa0208430:CDS | 55.0% |
| GGTCCAGGTCTAACCGGTAG+TGG | - | chr2_1:43531771-43531790 | Msa0208430:CDS | 60.0% | |
| !! | GGGCTATACACGGGTTGGGT+TGG | - | chr2_1:43533173-43533192 | Msa0208430:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 43531249 | 43535458 | 43531249 | ID=Msa0208430;Name=Msa0208430 |
| chr2_1 | mRNA | 43531249 | 43535458 | 43531249 | ID=Msa0208430-mRNA-1;Parent=Msa0208430;Name=Msa0208430-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.8|0.83|1|1|1|6|136|463 |
| chr2_1 | exon | 43531249 | 43531852 | 43531249 | ID=Msa0208430-mRNA-1:exon:12856;Parent=Msa0208430-mRNA-1 |
| chr2_1 | exon | 43532175 | 43532522 | 43532175 | ID=Msa0208430-mRNA-1:exon:12855;Parent=Msa0208430-mRNA-1 |
| chr2_1 | exon | 43534025 | 43534203 | 43534025 | ID=Msa0208430-mRNA-1:exon:12854;Parent=Msa0208430-mRNA-1 |
| chr2_1 | exon | 43534864 | 43534966 | 43534864 | ID=Msa0208430-mRNA-1:exon:12853;Parent=Msa0208430-mRNA-1 |
| chr2_1 | exon | 43535062 | 43535274 | 43535062 | ID=Msa0208430-mRNA-1:exon:12852;Parent=Msa0208430-mRNA-1 |
| chr2_1 | exon | 43535378 | 43535458 | 43535378 | ID=Msa0208430-mRNA-1:exon:12851;Parent=Msa0208430-mRNA-1 |
| chr2_1 | CDS | 43535378 | 43535458 | 43535378 | ID=Msa0208430-mRNA-1:cds;Parent=Msa0208430-mRNA-1 |
| chr2_1 | CDS | 43535062 | 43535274 | 43535062 | ID=Msa0208430-mRNA-1:cds;Parent=Msa0208430-mRNA-1 |
| chr2_1 | CDS | 43534864 | 43534966 | 43534864 | ID=Msa0208430-mRNA-1:cds;Parent=Msa0208430-mRNA-1 |
| chr2_1 | CDS | 43534025 | 43534203 | 43534025 | ID=Msa0208430-mRNA-1:cds;Parent=Msa0208430-mRNA-1 |
| chr2_1 | CDS | 43532175 | 43532522 | 43532175 | ID=Msa0208430-mRNA-1:cds;Parent=Msa0208430-mRNA-1 |
| chr2_1 | CDS | 43531385 | 43531852 | 43531385 | ID=Msa0208430-mRNA-1:cds;Parent=Msa0208430-mRNA-1 |
| chr2_1 | three_prime_UTR | 43531249 | 43531384 | 43531249 | ID=Msa0208430-mRNA-1:three_prime_utr;Parent=Msa0208430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
