Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213350 | XP_003594812.2 | 96.111 | 180 | 7 | 0 | 14 | 193 | 231 | 410 | 2.84e-118 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213350 | sp|Q71VM4|IMA1A_ORYSJ | 85.556 | 180 | 26 | 0 | 14 | 193 | 230 | 409 | 1.35e-106 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213350 | G7IMW8 | 96.111 | 180 | 7 | 0 | 14 | 193 | 231 | 410 | 1.36e-118 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0213350 | Msa0223010 | 0.806731 | 7.133894e-50 | -8.615850e-47 |
| Msa0213350 | Msa1085740 | 0.801594 | 8.362959e-49 | -8.615850e-47 |
| Msa0213350 | Msa1427230 | 0.830124 | 3.503653e-55 | -8.615850e-47 |
| Msa0213350 | Msa1458750 | 0.802035 | 6.789412e-49 | -8.615850e-47 |
| Msa0213350 | Msa1460830 | 0.821876 | 3.197894e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213350 | MtrunA17_Chr2g0294881 | 96.111 | 180 | 7 | 0 | 14 | 193 | 231 | 410 | 2.62e-122 | 356 |
| Msa0213350 | MtrunA17_Chr2g0294881 | 28.962 | 183 | 115 | 7 | 19 | 193 | 107 | 282 | 2.76e-11 | 62.0 |
| Msa0213350 | MtrunA17_Chr4g0074371 | 85.000 | 180 | 27 | 0 | 14 | 193 | 154 | 333 | 2.48e-108 | 317 |
| Msa0213350 | MtrunA17_Chr4g0074371 | 28.090 | 178 | 123 | 4 | 19 | 193 | 30 | 205 | 8.73e-11 | 60.5 |
| Msa0213350 | MtrunA17_Chr8g0346871 | 79.167 | 192 | 40 | 0 | 1 | 192 | 124 | 315 | 7.54e-107 | 314 |
| Msa0213350 | MtrunA17_Chr1g0192541 | 83.889 | 180 | 29 | 0 | 14 | 193 | 232 | 411 | 6.67e-106 | 315 |
| Msa0213350 | MtrunA17_Chr1g0192541 | 31.169 | 154 | 94 | 5 | 45 | 193 | 137 | 283 | 8.26e-12 | 63.5 |
| Msa0213350 | MtrunA17_Chr7g0271871 | 80.556 | 180 | 35 | 0 | 14 | 193 | 232 | 411 | 7.69e-100 | 299 |
| Msa0213350 | MtrunA17_Chr7g0271871 | 30.508 | 177 | 109 | 6 | 19 | 187 | 108 | 278 | 6.37e-14 | 69.7 |
| Msa0213350 | MtrunA17_Chr4g0075701 | 74.742 | 194 | 48 | 1 | 1 | 193 | 151 | 344 | 7.47e-99 | 295 |
| Msa0213350 | MtrunA17_Chr4g0068051 | 78.333 | 180 | 38 | 1 | 14 | 192 | 234 | 413 | 1.12e-95 | 288 |
| Msa0213350 | MtrunA17_Chr4g0075691 | 71.134 | 194 | 55 | 1 | 1 | 193 | 138 | 331 | 2.95e-86 | 263 |
| Msa0213350 | MtrunA17_Chr4g0074081 | 78.333 | 180 | 38 | 1 | 14 | 193 | 153 | 331 | 4.63e-85 | 259 |
| Msa0213350 | MtrunA17_Chr1g0174791 | 71.038 | 183 | 50 | 3 | 14 | 193 | 25 | 207 | 1.54e-82 | 248 |
| Msa0213350 | MtrunA17_Chr4g0071971 | 72.174 | 115 | 25 | 2 | 34 | 147 | 5 | 113 | 2.25e-46 | 150 |
| Msa0213350 | MtrunA17_Chr4g0004921 | 57.895 | 152 | 19 | 2 | 43 | 192 | 1 | 109 | 3.82e-46 | 152 |
| Msa0213350 | MtrunA17_Chr7g0271821 | 48.619 | 181 | 88 | 5 | 14 | 192 | 284 | 461 | 1.14e-42 | 150 |
| Msa0213350 | MtrunA17_Chr7g0272761 | 47.191 | 178 | 87 | 5 | 16 | 189 | 240 | 414 | 2.06e-41 | 146 |
| Msa0213350 | MtrunA17_Chr7g0271831 | 46.821 | 173 | 88 | 4 | 22 | 193 | 165 | 334 | 1.51e-39 | 140 |
| Msa0213350 | MtrunA17_Chr4g0069541 | 78.333 | 60 | 13 | 0 | 104 | 163 | 55 | 114 | 1.13e-24 | 95.1 |
| Msa0213350 | MtrunA17_Chr4g0075641 | 39.869 | 153 | 68 | 4 | 58 | 192 | 2 | 148 | 1.88e-21 | 86.3 |
| Msa0213350 | MtrunA17_Chr4g0075631 | 68.627 | 51 | 16 | 0 | 1 | 51 | 1 | 51 | 1.89e-18 | 75.9 |
| Msa0213350 | MtrunA17_Chr1g0181541 | 32.927 | 164 | 102 | 3 | 23 | 179 | 251 | 413 | 2.35e-18 | 82.8 |
| Msa0213350 | MtrunA17_Chr4g0075651 | 86.667 | 45 | 6 | 0 | 148 | 192 | 8 | 52 | 3.01e-18 | 78.2 |
| Msa0213350 | MtrunA17_Chr4g0071961 | 85.417 | 48 | 7 | 0 | 146 | 193 | 2 | 49 | 5.00e-18 | 79.3 |
| Msa0213350 | MtrunA17_Chr4g0075601 | 86.667 | 45 | 6 | 0 | 146 | 190 | 1 | 45 | 9.58e-18 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213350 | AT3G06720.1 | 81.667 | 180 | 33 | 0 | 14 | 193 | 230 | 409 | 4.09e-101 | 303 |
| Msa0213350 | AT3G06720.1 | 30.601 | 183 | 112 | 7 | 19 | 193 | 106 | 281 | 6.05e-12 | 64.3 |
| Msa0213350 | AT3G06720.2 | 81.667 | 180 | 33 | 0 | 14 | 193 | 230 | 409 | 4.09e-101 | 303 |
| Msa0213350 | AT3G06720.2 | 30.601 | 183 | 112 | 7 | 19 | 193 | 106 | 281 | 6.05e-12 | 64.3 |
| Msa0213350 | AT4G16143.2 | 83.333 | 180 | 30 | 0 | 14 | 193 | 235 | 414 | 2.54e-98 | 295 |
| Msa0213350 | AT4G16143.2 | 30.392 | 204 | 123 | 8 | 19 | 210 | 111 | 307 | 3.62e-13 | 68.2 |
| Msa0213350 | AT4G16143.1 | 83.333 | 180 | 30 | 0 | 14 | 193 | 235 | 414 | 2.54e-98 | 295 |
| Msa0213350 | AT4G16143.1 | 30.392 | 204 | 123 | 8 | 19 | 210 | 111 | 307 | 3.62e-13 | 68.2 |
| Msa0213350 | AT1G09270.3 | 77.778 | 180 | 40 | 0 | 14 | 193 | 155 | 334 | 1.02e-94 | 284 |
| Msa0213350 | AT1G09270.3 | 25.794 | 252 | 100 | 4 | 19 | 183 | 31 | 282 | 8.47e-12 | 63.9 |
| Msa0213350 | AT1G09270.2 | 77.778 | 180 | 40 | 0 | 14 | 193 | 237 | 416 | 4.64e-94 | 285 |
| Msa0213350 | AT1G09270.2 | 25.794 | 252 | 100 | 4 | 19 | 183 | 113 | 364 | 7.55e-12 | 64.3 |
| Msa0213350 | AT1G09270.1 | 77.778 | 180 | 40 | 0 | 14 | 193 | 237 | 416 | 4.64e-94 | 285 |
| Msa0213350 | AT1G09270.1 | 25.794 | 252 | 100 | 4 | 19 | 183 | 113 | 364 | 7.55e-12 | 64.3 |
| Msa0213350 | AT4G02150.2 | 76.705 | 176 | 41 | 0 | 14 | 189 | 233 | 408 | 7.92e-94 | 280 |
| Msa0213350 | AT4G02150.1 | 75.000 | 180 | 45 | 0 | 14 | 193 | 233 | 412 | 1.03e-91 | 278 |
| Msa0213350 | AT1G02690.1 | 73.889 | 180 | 47 | 0 | 14 | 193 | 234 | 413 | 1.46e-89 | 273 |
| Msa0213350 | AT1G02690.1 | 29.231 | 195 | 126 | 8 | 19 | 205 | 110 | 300 | 5.22e-12 | 64.7 |
| Msa0213350 | AT1G02690.2 | 73.481 | 181 | 47 | 1 | 14 | 193 | 234 | 414 | 1.02e-87 | 268 |
| Msa0213350 | AT1G02690.2 | 28.500 | 200 | 122 | 9 | 19 | 205 | 110 | 301 | 1.20e-11 | 63.5 |
| Msa0213350 | AT3G05720.1 | 62.088 | 182 | 69 | 0 | 12 | 193 | 216 | 397 | 1.09e-75 | 237 |
| Msa0213350 | AT3G05720.1 | 29.730 | 185 | 113 | 7 | 31 | 205 | 109 | 286 | 9.64e-13 | 67.0 |
| Msa0213350 | AT3G05720.2 | 62.088 | 182 | 69 | 0 | 12 | 193 | 216 | 397 | 1.09e-75 | 237 |
| Msa0213350 | AT3G05720.2 | 29.730 | 185 | 113 | 7 | 31 | 205 | 109 | 286 | 9.64e-13 | 67.0 |
| Msa0213350 | AT5G49310.1 | 63.333 | 180 | 66 | 0 | 14 | 193 | 228 | 407 | 1.77e-73 | 231 |
| Msa0213350 | AT5G49310.1 | 27.111 | 225 | 115 | 6 | 19 | 195 | 104 | 327 | 1.38e-11 | 63.5 |
| Msa0213350 | AT5G52000.1 | 57.459 | 181 | 77 | 0 | 12 | 192 | 156 | 336 | 3.95e-66 | 210 |
| Msa0213350 | AT5G49305.5 | 36.517 | 178 | 108 | 3 | 12 | 188 | 154 | 327 | 5.58e-25 | 100 |
| Msa0213350 | AT5G49305.3 | 36.517 | 178 | 108 | 3 | 12 | 188 | 154 | 327 | 5.58e-25 | 100 |
| Msa0213350 | AT5G49305.4 | 36.517 | 178 | 108 | 3 | 12 | 188 | 154 | 327 | 5.58e-25 | 100 |
| Msa0213350 | AT5G49305.1 | 36.517 | 178 | 108 | 3 | 12 | 188 | 154 | 327 | 5.58e-25 | 100 |
| Msa0213350 | AT5G49305.2 | 36.517 | 178 | 108 | 3 | 12 | 188 | 154 | 327 | 5.58e-25 | 100 |
| Msa0213350 | AT5G03070.1 | 29.114 | 158 | 106 | 2 | 28 | 179 | 256 | 413 | 6.52e-15 | 73.2 |
Find 51 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAGAGTGAACGAAATT+TGG | 0.259092 | 2_1:-56172713 | Msa0213350:three_prime_UTR |
| TGAACTGACACCATTCTTCT+TGG | 0.277559 | 2_1:+56172927 | None:intergenic |
| ATTTGGAGGTTACCTGTATC+TGG | 0.286161 | 2_1:+56173593 | None:intergenic |
| GATGATTTGCCTGCTTGTTT+TGG | 0.310233 | 2_1:-56172682 | Msa0213350:three_prime_UTR |
| TCTTGTGATTATGGGTCAAC+AGG | 0.349313 | 2_1:+56173674 | None:intergenic |
| ACTTCCAGCTCTTGAGCGTT+TGG | 0.358118 | 2_1:-56175292 | Msa0213350:CDS |
| CGCTCAAGAGCTGGAAGTGC+TGG | 0.366528 | 2_1:+56175297 | None:intergenic |
| GTATTAAGAAAGAAGCTTGC+TGG | 0.380667 | 2_1:-56173648 | Msa0213350:CDS |
| AGCCGGACTGATTGCTCCTC+TGG | 0.418448 | 2_1:-56173135 | Msa0213350:CDS |
| TTTCCCACCGTGCGAAGTGC+AGG | 0.425467 | 2_1:+56175024 | None:intergenic |
| TGCCTACTACTGCTCTTGGC+AGG | 0.425983 | 2_1:-56176038 | Msa0213350:intron |
| ACAGCAACTACCTGATCAAA+TGG | 0.433718 | 2_1:+56175404 | None:intergenic |
| CACATACTTGATTTGCTCAT+GGG | 0.461333 | 2_1:+56173034 | None:intergenic |
| AAGTCCTGACAGATGCATGC+TGG | 0.478035 | 2_1:-56175251 | Msa0213350:CDS |
| TCACATACTTGATTTGCTCA+TGG | 0.478259 | 2_1:+56173033 | None:intergenic |
| GCACTCTCCAATGCTACATC+TGG | 0.481318 | 2_1:-56173062 | Msa0213350:CDS |
| GTGCCCAGCATGCATCTGTC+AGG | 0.489359 | 2_1:+56175247 | None:intergenic |
| AAAACCAAACGCTCAAGAGC+TGG | 0.493674 | 2_1:+56175288 | None:intergenic |
| ACCTGATCAAATGGAGGTTG+TGG | 0.493907 | 2_1:+56175413 | None:intergenic |
| TTTGTGCCTACTACTGCTCT+TGG | 0.496242 | 2_1:-56176042 | Msa0213350:CDS |
| GCCACAACCTCCATTTGATC+AGG | 0.496284 | 2_1:-56175414 | Msa0213350:intron |
| GCACTCTCTTATCTCTCTGA+TGG | 0.505911 | 2_1:-56175228 | Msa0213350:CDS |
| ATTATATCAAACATTACAGC+TGG | 0.506298 | 2_1:-56173625 | Msa0213350:CDS |
| ATCCAAGCGGTGATTGAGGC+AGG | 0.508765 | 2_1:-56175192 | Msa0213350:CDS |
| ACGGTGGGAAATATTGTAAC+GGG | 0.515526 | 2_1:-56175012 | Msa0213350:CDS |
| ATCCCTGCACTTCGCACGGT+GGG | 0.519321 | 2_1:-56175027 | Msa0213350:CDS |
| CACCTGCCTCAATCACCGCT+TGG | 0.530994 | 2_1:+56175190 | None:intergenic |
| GGGATCAGCACTGAAGGAGA+TGG | 0.533434 | 2_1:+56175045 | None:intergenic |
| CAAAATCCAAGCGGTGATTG+AGG | 0.535552 | 2_1:-56175196 | Msa0213350:CDS |
| ATTGATGATTCCAAGAAGAA+TGG | 0.535910 | 2_1:-56172937 | Msa0213350:CDS |
| AGTCCTGACAGATGCATGCT+GGG | 0.537551 | 2_1:-56175250 | Msa0213350:CDS |
| ATGTAGGCTGTTATTGAAGC+CGG | 0.538904 | 2_1:-56173152 | Msa0213350:intron |
| GCTGATCCCTGCACTTCGCA+CGG | 0.540455 | 2_1:-56175031 | Msa0213350:CDS |
| GGGAGATGATGCGCAGACTC+AGG | 0.546817 | 2_1:-56174992 | Msa0213350:intron |
| GACCAGAGGAGCAATCAGTC+CGG | 0.553350 | 2_1:+56173133 | None:intergenic |
| GGCAGGTGTATGTGGCAGAC+TGG | 0.553415 | 2_1:-56175175 | Msa0213350:CDS |
| TGGAAACAAAGACCAGATAC+AGG | 0.554927 | 2_1:-56173605 | Msa0213350:intron |
| GTCAACAGGCTCAAAAGACA+TGG | 0.559325 | 2_1:+56173688 | None:intergenic |
| GACCTGCCAAGAGCAGTAGT+AGG | 0.564365 | 2_1:+56176036 | None:intergenic |
| AGTGCAGGGATCAGCACTGA+AGG | 0.566296 | 2_1:+56175039 | None:intergenic |
| GTGATTGAGGCAGGTGTATG+TGG | 0.576179 | 2_1:-56175183 | Msa0213350:CDS |
| GGTACCGCCAGATGTAGCAT+TGG | 0.592074 | 2_1:+56173055 | None:intergenic |
| AGTAGTAGGCACAAAACAGA+TGG | 0.598197 | 2_1:+56176050 | None:intergenic |
| CACGGTGGGAAATATTGTAA+CGG | 0.599546 | 2_1:-56175013 | Msa0213350:CDS |
| CATTTATATCCAAAACAAGC+AGG | 0.601519 | 2_1:+56172673 | None:intergenic |
| TTCCCACCGTGCGAAGTGCA+GGG | 0.602360 | 2_1:+56175025 | None:intergenic |
| GATCCCTGCACTTCGCACGG+TGG | 0.621361 | 2_1:-56175028 | Msa0213350:CDS |
| CTCTCCAATGCTACATCTGG+CGG | 0.629473 | 2_1:-56173059 | Msa0213350:CDS |
| TCAACAGGCTCAAAAGACAT+GGG | 0.682804 | 2_1:+56173689 | None:intergenic |
| GCAACTACCTGATCAAATGG+AGG | 0.705454 | 2_1:+56175407 | None:intergenic |
| AACAAATGACAAAATCCAAG+CGG | 0.716535 | 2_1:-56175205 | Msa0213350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTACTAAATTTTAATA+TGG | + | chr2_1:56173813-56173832 | None:intergenic | 10.0% |
| !!! | AAAAATATCATATAACTTTT+AGG | + | chr2_1:56175811-56175830 | None:intergenic | 10.0% |
| !!! | TATATGATATTTTTATGATA+AGG | - | chr2_1:56175817-56175836 | Msa0213350:intron | 10.0% |
| !! | CAAAGAAATAATTAATAGTA+GGG | + | chr2_1:56174076-56174095 | None:intergenic | 15.0% |
| !! | ACTAATTAATGCTATATATT+TGG | - | chr2_1:56174378-56174397 | Msa0213350:intron | 15.0% |
| !!! | AAAAAAACAAATGTTTGTTA+TGG | - | chr2_1:56174704-56174723 | Msa0213350:intron | 15.0% |
| !!! | AAAAAACAAATGTTTGTTAT+GGG | - | chr2_1:56174705-56174724 | Msa0213350:intron | 15.0% |
| !!! | TATTCAAATTTGATGTTTTT+TGG | - | chr2_1:56175215-56175234 | Msa0213350:CDS | 15.0% |
| !!! | ATTCAAATTTGATGTTTTTT+GGG | - | chr2_1:56175216-56175235 | Msa0213350:CDS | 15.0% |
| !!! | CTTTTGTGTATTAATGATAA+TGG | - | chr2_1:56173364-56173383 | Msa0213350:intron | 20.0% |
| !!! | AATTTATATGCATGTTTTGT+AGG | - | chr2_1:56173634-56173653 | Msa0213350:CDS | 20.0% |
| !!! | TTTTGCAAGTAATTAGATTT+AGG | - | chr2_1:56173949-56173968 | Msa0213350:intron | 20.0% |
| !! | TTTGCAAGTAATTAGATTTA+GGG | - | chr2_1:56173950-56173969 | Msa0213350:intron | 20.0% |
| !! | CCAAAGAAATAATTAATAGT+AGG | + | chr2_1:56174077-56174096 | None:intergenic | 20.0% |
| !!! | CCTACTATTAATTATTTCTT+TGG | - | chr2_1:56174074-56174093 | Msa0213350:intron | 20.0% |
| !!! | ACCAATATATCTCTATTTTT+TGG | + | chr2_1:56174773-56174792 | None:intergenic | 20.0% |
| !! | AAAAAATAGAGATATATTGG+TGG | - | chr2_1:56174772-56174791 | Msa0213350:intron | 20.0% |
| !!! | AATACTTTTCTTGTGATTAT+GGG | + | chr2_1:56175042-56175061 | None:intergenic | 20.0% |
| !!! | TAATACTTTTCTTGTGATTA+TGG | + | chr2_1:56175043-56175062 | None:intergenic | 20.0% |
| !! | TTTATGTATTTACAACAGAA+TGG | + | chr2_1:56175372-56175391 | None:intergenic | 20.0% |
| !! | AGTTATGTATGTAATTGAAA+TGG | + | chr2_1:56175409-56175428 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTAATGTCAAACT+CGG | + | chr2_1:56175614-56175633 | None:intergenic | 20.0% |
| !!! | ATGATATTTTTATGATAAGG+TGG | - | chr2_1:56175820-56175839 | Msa0213350:intron | 20.0% |
| !!! | TGATATTTTTATGATAAGGT+GGG | - | chr2_1:56175821-56175840 | Msa0213350:intron | 20.0% |
| !!! | AATTATATTTGCTATAGAAG+TGG | - | chr2_1:56175856-56175875 | Msa0213350:intron | 20.0% |
| !!! | AATATAGTGTTATTGCTTAA+TGG | - | chr2_1:56175946-56175965 | Msa0213350:intron | 20.0% |
| !! | TTTTTATAGCTGATGTGTTT+AGG | - | chr2_1:56172779-56172798 | Msa0213350:intron | 25.0% |
| ! | ATCATAACTGAACATACAAA+CGG | - | chr2_1:56173336-56173355 | Msa0213350:intron | 25.0% |
| !!! | TAATGATAATGGAACTTTGA+TGG | - | chr2_1:56173375-56173394 | Msa0213350:intron | 25.0% |
| !! | CTAAATCAGTACTTTATTTC+AGG | + | chr2_1:56173857-56173876 | None:intergenic | 25.0% |
| !! | AAACACATACTTTAGCATTT+TGG | + | chr2_1:56173982-56174001 | None:intergenic | 25.0% |
| !! | TAATTGACAAAGGGTATAAT+TGG | + | chr2_1:56174312-56174331 | None:intergenic | 25.0% |
| ! | AGATATGAGTAATTGACAAA+GGG | + | chr2_1:56174321-56174340 | None:intergenic | 25.0% |
| ! | AAGATATGAGTAATTGACAA+AGG | + | chr2_1:56174322-56174341 | None:intergenic | 25.0% |
| !! | TTCTTCTTTTTGAACATTCA+TGG | + | chr2_1:56174606-56174625 | None:intergenic | 25.0% |
| ! | GCCAAAAAATAGAGATATAT+TGG | - | chr2_1:56174769-56174788 | Msa0213350:intron | 25.0% |
| !!! | TATATTGGTGGATTAAATTG+AGG | - | chr2_1:56174784-56174803 | Msa0213350:intron | 25.0% |
| ! | AAACGACACTTAAAAATGAA+CGG | - | chr2_1:56174865-56174884 | Msa0213350:intron | 25.0% |
| ! | ATTATATCAAACATTACAGC+TGG | - | chr2_1:56175080-56175099 | Msa0213350:intron | 25.0% |
| ! | AATTGAGTTATCATGAACAT+GGG | + | chr2_1:56175138-56175157 | None:intergenic | 25.0% |
| ! | AATCCAACAATTACTCTAAT+TGG | + | chr2_1:56175325-56175344 | None:intergenic | 25.0% |
| ! | TACAACAGAATGGAAAATAA+GGG | + | chr2_1:56175362-56175381 | None:intergenic | 25.0% |
| ! | TTACAACAGAATGGAAAATA+AGG | + | chr2_1:56175363-56175382 | None:intergenic | 25.0% |
| ! | GTTGTAAATACATAAAAGAC+AGG | - | chr2_1:56175376-56175395 | Msa0213350:intron | 25.0% |
| !!! | GTTAGCTTATTTTCTGAAAA+AGG | - | chr2_1:56175508-56175527 | Msa0213350:intron | 25.0% |
| ! | AAATAACCATGTTACTAAGA+GGG | + | chr2_1:56175726-56175745 | None:intergenic | 25.0% |
| ! | AAAATAACCATGTTACTAAG+AGG | + | chr2_1:56175727-56175746 | None:intergenic | 25.0% |
| ! | AAGTCAAAGCATTATGAGTT+TGG | - | chr2_1:56172987-56173006 | Msa0213350:intron | 30.0% |
| ACATAATTGAAGCCTAACAT+GGG | - | chr2_1:56173137-56173156 | Msa0213350:CDS | 30.0% | |
| TCATAACTGAACATACAAAC+GGG | - | chr2_1:56173337-56173356 | Msa0213350:intron | 30.0% | |
| AACAAATGACAAAATCCAAG+CGG | - | chr2_1:56173500-56173519 | Msa0213350:intron | 30.0% | |
| CTTGTGAATTGTTCAACAAT+TGG | - | chr2_1:56173750-56173769 | Msa0213350:intron | 30.0% | |
| !!! | TAGTGTTGTGTTGGTAATTT+TGG | - | chr2_1:56173874-56173893 | Msa0213350:intron | 30.0% |
| TCTTTGGTCAATTAACCTAA+TGG | - | chr2_1:56174090-56174109 | Msa0213350:intron | 30.0% | |
| AAACGACACTTAAAAAGGAA+CGG | + | chr2_1:56174230-56174249 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTAAGTGTCGTTTT+AGG | - | chr2_1:56174231-56174250 | Msa0213350:intron | 30.0% |
| !!! | CCTTTTTAAGTGTCGTTTTA+GGG | - | chr2_1:56174232-56174251 | Msa0213350:intron | 30.0% |
| !! | TTCCTATTTAACTGTCGTTT+TGG | - | chr2_1:56174266-56174285 | Msa0213350:intron | 30.0% |
| TACCAAAACGACAGTTAAAT+AGG | + | chr2_1:56174271-56174290 | None:intergenic | 30.0% | |
| !!! | ACTGTCGTTTTGGTATTTTA+AGG | - | chr2_1:56174276-56174295 | Msa0213350:intron | 30.0% |
| !!! | CTGTCGTTTTGGTATTTTAA+GGG | - | chr2_1:56174277-56174296 | Msa0213350:intron | 30.0% |
| TGTTCAAAAAGAAGAAAGAG+TGG | - | chr2_1:56174610-56174629 | Msa0213350:intron | 30.0% | |
| !!! | AATTCACTTTGCTATTTTCG+TGG | - | chr2_1:56174832-56174851 | Msa0213350:intron | 30.0% |
| CAAAATCAGATAACTCTCAA+AGG | + | chr2_1:56174954-56174973 | None:intergenic | 30.0% | |
| ! | TGAGAGTTATCTGATTTTGT+TGG | - | chr2_1:56174955-56174974 | Msa0213350:intron | 30.0% |
| ! | GAGAGTTATCTGATTTTGTT+GGG | - | chr2_1:56174956-56174975 | Msa0213350:intron | 30.0% |
| CAATTGAGTTATCATGAACA+TGG | + | chr2_1:56175139-56175158 | None:intergenic | 30.0% | |
| ! | TACAATGATTGTTATTGCAC+CGG | + | chr2_1:56175268-56175287 | None:intergenic | 30.0% |
| TGTAGATATATTTACTTCCC+AGG | - | chr2_1:56175292-56175311 | Msa0213350:CDS | 30.0% | |
| ACACCAATTAGAGTAATTGT+TGG | - | chr2_1:56175319-56175338 | Msa0213350:intron | 30.0% | |
| AGAGTAATTGTTGGATTGTT+AGG | - | chr2_1:56175328-56175347 | Msa0213350:intron | 30.0% | |
| AAATACATAAAAGACAGGTG+TGG | - | chr2_1:56175381-56175400 | Msa0213350:intron | 30.0% | |
| !!! | TTGCCATTTTGTTTTCTGTT+TGG | - | chr2_1:56175441-56175460 | Msa0213350:intron | 30.0% |
| !!! | TGCCATTTTGTTTTCTGTTT+GGG | - | chr2_1:56175442-56175461 | Msa0213350:intron | 30.0% |
| GAACCATTTATGTATGATGT+AGG | - | chr2_1:56175537-56175556 | Msa0213350:intron | 30.0% | |
| ACATTAAAAAAGAAGCTGCA+TGG | - | chr2_1:56175620-56175639 | Msa0213350:intron | 30.0% | |
| CATTAAAAAAGAAGCTGCAT+GGG | - | chr2_1:56175621-56175640 | Msa0213350:intron | 30.0% | |
| ! | ATTGATGATTCCAAGAAGAA+TGG | - | chr2_1:56175768-56175787 | Msa0213350:intron | 30.0% |
| ! | TATTGCTTAATGGTGTTTTC+TGG | - | chr2_1:56175956-56175975 | Msa0213350:intron | 30.0% |
| !! | GTGTTTTCTGGTATATATTC+AGG | - | chr2_1:56175968-56175987 | Msa0213350:intron | 30.0% |
| CATTTATATCCAAAACAAGC+AGG | + | chr2_1:56176035-56176054 | None:intergenic | 30.0% | |
| GTTTATCCTTCACTTGGATA+AGG | + | chr2_1:56172883-56172902 | None:intergenic | 35.0% | |
| GTACTCAGAGTAGAGATTAT+GGG | + | chr2_1:56173029-56173048 | None:intergenic | 35.0% | |
| TGATCCATTAACAGTATCCT+TGG | + | chr2_1:56173107-56173126 | None:intergenic | 35.0% | |
| GACATAATTGAAGCCTAACA+TGG | - | chr2_1:56173136-56173155 | Msa0213350:CDS | 35.0% | |
| CATAATTGAAGCCTAACATG+GGG | - | chr2_1:56173138-56173157 | Msa0213350:CDS | 35.0% | |
| ATAATAACTCCCGTGTTAGA+GGG | + | chr2_1:56173173-56173192 | None:intergenic | 35.0% | |
| ! | GACTTTGTCAAACTTTTGCA+GGG | - | chr2_1:56173264-56173283 | Msa0213350:intron | 35.0% |
| ! | ACTTTGTCAAACTTTTGCAG+GGG | - | chr2_1:56173265-56173284 | Msa0213350:intron | 35.0% |
| ! | ATAATGGAACTTTGATGGAC+AGG | - | chr2_1:56173380-56173399 | Msa0213350:intron | 35.0% |
| GAAGAATCGTTACTCACAAA+AGG | + | chr2_1:56173563-56173582 | None:intergenic | 35.0% | |
| CAATAACTGCAAAAGATCAC+TGG | + | chr2_1:56173599-56173618 | None:intergenic | 35.0% | |
| AGACTCAGGTAATGTCATAA+TGG | - | chr2_1:56173727-56173746 | Msa0213350:intron | 35.0% | |
| !! | GTACTGATTTAGTGTTGTGT+TGG | - | chr2_1:56173865-56173884 | Msa0213350:intron | 35.0% |
| GTGAGCATAACTCATTCATA+GGG | + | chr2_1:56174181-56174200 | None:intergenic | 35.0% | |
| CCCTAAAACGACACTTAAAA+AGG | + | chr2_1:56174235-56174254 | None:intergenic | 35.0% | |
| AGACTCATTGGAACTACTAA+TGG | - | chr2_1:56174634-56174653 | Msa0213350:intron | 35.0% | |
| TCATTGGAACTACTAATGGA+AGG | - | chr2_1:56174638-56174657 | Msa0213350:intron | 35.0% | |
| GACACTTAAAAATGAACGGA+GGG | - | chr2_1:56174869-56174888 | Msa0213350:intron | 35.0% | |
| ! | TCTTTTTGTCAGGCTGTTAT+TGG | - | chr2_1:56174981-56175000 | Msa0213350:intron | 35.0% |
| GTATTAAGAAAGAAGCTTGC+TGG | - | chr2_1:56175057-56175076 | Msa0213350:intron | 35.0% | |
| GTTATCATGAACATGGGATT+TGG | + | chr2_1:56175132-56175151 | None:intergenic | 35.0% | |
| ! | GTATCACATGCTGTTTAACA+CGG | - | chr2_1:56175238-56175257 | Msa0213350:CDS | 35.0% |
| CTCTAATTGGTGTATAACCT+GGG | + | chr2_1:56175312-56175331 | None:intergenic | 35.0% | |
| ACTCTAATTGGTGTATAACC+TGG | + | chr2_1:56175313-56175332 | None:intergenic | 35.0% | |
| !!! | GCCATTTTGTTTTCTGTTTG+GGG | - | chr2_1:56175443-56175462 | Msa0213350:intron | 35.0% |
| ACCCCAAACAGAAAACAAAA+TGG | + | chr2_1:56175447-56175466 | None:intergenic | 35.0% | |
| CAGCCTACATCATACATAAA+TGG | + | chr2_1:56175543-56175562 | None:intergenic | 35.0% | |
| !! | TTTTGAAGAAGATTGACCAG+AGG | + | chr2_1:56175589-56175608 | None:intergenic | 35.0% |
| !! | CACATACTTGATTTGCTCAT+GGG | + | chr2_1:56175674-56175693 | None:intergenic | 35.0% |
| !! | TCACATACTTGATTTGCTCA+TGG | + | chr2_1:56175675-56175694 | None:intergenic | 35.0% |
| TAGTTACCCTCTTAGTAACA+TGG | - | chr2_1:56175717-56175736 | Msa0213350:intron | 35.0% | |
| TCTGGTATATATTCAGGTAG+AGG | - | chr2_1:56175974-56175993 | Msa0213350:intron | 35.0% | |
| AGTAGTAGGCACAAAACAGA+TGG | + | chr2_1:56172658-56172677 | None:intergenic | 40.0% | |
| CAAAACAACAACACCAACAG+AGG | + | chr2_1:56172812-56172831 | None:intergenic | 40.0% | |
| !!! | GTTGGTGTTGTTGTTTTGCT+AGG | - | chr2_1:56172814-56172833 | Msa0213350:intron | 40.0% |
| ! | GTTTTGCTAGGTAGATGTAG+CGG | - | chr2_1:56172826-56172845 | Msa0213350:intron | 40.0% |
| AGCATCGTTTATCCTTCACT+TGG | + | chr2_1:56172889-56172908 | None:intergenic | 40.0% | |
| AGAATAATCTCCATCGCACT+CGG | + | chr2_1:56172919-56172938 | None:intergenic | 40.0% | |
| GGTACTCAGAGTAGAGATTA+TGG | + | chr2_1:56173030-56173049 | None:intergenic | 40.0% | |
| GTTTCTTCTCCTTCATTCCT+TGG | + | chr2_1:56173063-56173082 | None:intergenic | 40.0% | |
| GGAGAAGAAACAACCTATAG+TGG | - | chr2_1:56173072-56173091 | Msa0213350:CDS | 40.0% | |
| CATAATAACTCCCGTGTTAG+AGG | + | chr2_1:56173174-56173193 | None:intergenic | 40.0% | |
| CAATGCTGAGAAATGTCACA+TGG | - | chr2_1:56173242-56173261 | Msa0213350:intron | 40.0% | |
| ! | GGACTTTGTCAAACTTTTGC+AGG | - | chr2_1:56173263-56173282 | Msa0213350:intron | 40.0% |
| ACAGCAACTACCTGATCAAA+TGG | + | chr2_1:56173304-56173323 | None:intergenic | 40.0% | |
| !!! | GATCAGGTAGTTGCTGTTTT+TGG | - | chr2_1:56173307-56173326 | Msa0213350:intron | 40.0% |
| CACGGTGGGAAATATTGTAA+CGG | - | chr2_1:56173692-56173711 | Msa0213350:CDS | 40.0% | |
| ACGGTGGGAAATATTGTAAC+GGG | - | chr2_1:56173693-56173712 | Msa0213350:CDS | 40.0% | |
| TGGTCAATTAACCTAATGGC+TGG | - | chr2_1:56174094-56174113 | Msa0213350:intron | 40.0% | |
| !! | TGAATTTCTAGCCAGCCATT+AGG | + | chr2_1:56174108-56174127 | None:intergenic | 40.0% |
| TAGGGACATCACAATATGCA+GGG | + | chr2_1:56174163-56174182 | None:intergenic | 40.0% | |
| ATAGGGACATCACAATATGC+AGG | + | chr2_1:56174164-56174183 | None:intergenic | 40.0% | |
| CGTGAGCATAACTCATTCAT+AGG | + | chr2_1:56174182-56174201 | None:intergenic | 40.0% | |
| ATGAATGAGTTATGCTCACG+TGG | - | chr2_1:56174182-56174201 | Msa0213350:intron | 40.0% | |
| AGAAAGAGTGGAAGACTCAT+TGG | - | chr2_1:56174622-56174641 | Msa0213350:intron | 40.0% | |
| ACTACTAATGGAAGGTGAAG+AGG | - | chr2_1:56174646-56174665 | Msa0213350:intron | 40.0% | |
| CTACTAATGGAAGGTGAAGA+GGG | - | chr2_1:56174647-56174666 | Msa0213350:intron | 40.0% | |
| CGACACTTAAAAATGAACGG+AGG | - | chr2_1:56174868-56174887 | Msa0213350:intron | 40.0% | |
| ! | TTGTTGGGACTCTTTTTGTC+AGG | - | chr2_1:56174971-56174990 | Msa0213350:intron | 40.0% |
| TCAACAGGCTCAAAAGACAT+GGG | + | chr2_1:56175019-56175038 | None:intergenic | 40.0% | |
| TCTTGTGATTATGGGTCAAC+AGG | + | chr2_1:56175034-56175053 | None:intergenic | 40.0% | |
| TGGAAACAAAGACCAGATAC+AGG | - | chr2_1:56175100-56175119 | Msa0213350:intron | 40.0% | |
| ATTTGGAGGTTACCTGTATC+TGG | + | chr2_1:56175115-56175134 | None:intergenic | 40.0% | |
| ATCATGAACATGGGATTTGG+AGG | + | chr2_1:56175129-56175148 | None:intergenic | 40.0% | |
| ATGTAGGCTGTTATTGAAGC+CGG | - | chr2_1:56175553-56175572 | Msa0213350:intron | 40.0% | |
| TGAACTGACACCATTCTTCT+TGG | + | chr2_1:56175781-56175800 | None:intergenic | 40.0% | |
| AGAGGAGAGTGAACGAAATT+TGG | - | chr2_1:56175992-56176011 | Msa0213350:intron | 40.0% | |
| !! | GATGATTTGCCTGCTTGTTT+TGG | - | chr2_1:56176023-56176042 | Msa0213350:intron | 40.0% |
| TTTGTGCCTACTACTGCTCT+TGG | - | chr2_1:56172663-56172682 | Msa0213350:three_prime_UTR | 45.0% | |
| TCTTGGCAGGTCTGATTTCT+TGG | - | chr2_1:56172680-56172699 | Msa0213350:three_prime_UTR | 45.0% | |
| CTTGGCAGGTCTGATTTCTT+GGG | - | chr2_1:56172681-56172700 | Msa0213350:three_prime_UTR | 45.0% | |
| TTGGCAGGTCTGATTTCTTG+GGG | - | chr2_1:56172682-56172701 | Msa0213350:three_prime_UTR | 45.0% | |
| TTTAGGTGTTTCGCCTCTGT+TGG | - | chr2_1:56172796-56172815 | Msa0213350:intron | 45.0% | |
| GCGTAACCTTATCCAAGTGA+AGG | - | chr2_1:56172874-56172893 | Msa0213350:intron | 45.0% | |
| ! | TCATTCCTTGGAGCGTTTAG+TGG | + | chr2_1:56173051-56173070 | None:intergenic | 45.0% |
| CTAAACGCTCCAAGGAATGA+AGG | - | chr2_1:56173051-56173070 | Msa0213350:CDS | 45.0% | |
| CGCACCAAGGATACTGTTAA+TGG | - | chr2_1:56173100-56173119 | Msa0213350:CDS | 45.0% | |
| GTTAACCCAGTTGAATGAGC+AGG | - | chr2_1:56173210-56173229 | Msa0213350:intron | 45.0% | |
| CTTTGCCTGCTCATTCAACT+GGG | + | chr2_1:56173218-56173237 | None:intergenic | 45.0% | |
| ACCTGATCAAATGGAGGTTG+TGG | + | chr2_1:56173295-56173314 | None:intergenic | 45.0% | |
| GCAACTACCTGATCAAATGG+AGG | + | chr2_1:56173301-56173320 | None:intergenic | 45.0% | |
| AAAACCAAACGCTCAAGAGC+TGG | + | chr2_1:56173420-56173439 | None:intergenic | 45.0% | |
| GCACTCTCTTATCTCTCTGA+TGG | - | chr2_1:56173477-56173496 | Msa0213350:intron | 45.0% | |
| CAAAATCCAAGCGGTGATTG+AGG | - | chr2_1:56173509-56173528 | Msa0213350:intron | 45.0% | |
| ACCCCTTGAGATGAGTAAGT+GGG | - | chr2_1:56174127-56174146 | Msa0213350:intron | 45.0% | |
| TCCCCACTTACTCATCTCAA+GGG | + | chr2_1:56174132-56174151 | None:intergenic | 45.0% | |
| TTCCCCACTTACTCATCTCA+AGG | + | chr2_1:56174133-56174152 | None:intergenic | 45.0% | |
| AGGGACATCACAATATGCAG+GGG | + | chr2_1:56174162-56174181 | None:intergenic | 45.0% | |
| CGACACTTAAAAAGGAACGG+AGG | + | chr2_1:56174227-56174246 | None:intergenic | 45.0% | |
| GTCAACAGGCTCAAAAGACA+TGG | + | chr2_1:56175020-56175039 | None:intergenic | 45.0% | |
| ! | TGCTGTTTAACACGGAGATC+CGG | - | chr2_1:56175246-56175265 | Msa0213350:CDS | 45.0% |
| !! | AAATTTAATTAGAAATAATT+AGG | + | chr2_1:56173782-56173801 | None:intergenic | 5.0% |
| GTTTGCGTGAGGAACTTAGC+AGG | - | chr2_1:56172707-56172726 | Msa0213350:three_prime_UTR | 50.0% | |
| GTGAGGAACTTAGCAGGTGT+TGG | - | chr2_1:56172713-56172732 | Msa0213350:three_prime_UTR | 50.0% | |
| !! | GAACTTAGCAGGTGTTGGCA+GGG | - | chr2_1:56172718-56172737 | Msa0213350:three_prime_UTR | 50.0% |
| AACTCCACTAACTCAGAGCG+TGG | - | chr2_1:56172944-56172963 | Msa0213350:intron | 50.0% | |
| ACTCCACTAACTCAGAGCGT+GGG | - | chr2_1:56172945-56172964 | Msa0213350:intron | 50.0% | |
| GAGTACCACTAAACGCTCCA+AGG | - | chr2_1:56173043-56173062 | Msa0213350:CDS | 50.0% | |
| TTGGTGCGCAACTCCACTAT+AGG | + | chr2_1:56173088-56173107 | None:intergenic | 50.0% | |
| ! | TATAGTGGAGTTGCGCACCA+AGG | - | chr2_1:56173087-56173106 | Msa0213350:CDS | 50.0% |
| AACTGGGTTAACAGCATCGC+AGG | + | chr2_1:56173202-56173221 | None:intergenic | 50.0% | |
| GCTTTGCCTGCTCATTCAAC+TGG | + | chr2_1:56173219-56173238 | None:intergenic | 50.0% | |
| GCCACAACCTCCATTTGATC+AGG | - | chr2_1:56173291-56173310 | Msa0213350:intron | 50.0% | |
| ! | GGAACTTTGATGGACAGGTG+AGG | - | chr2_1:56173385-56173404 | Msa0213350:intron | 50.0% |
| ACTTCCAGCTCTTGAGCGTT+TGG | - | chr2_1:56173413-56173432 | Msa0213350:intron | 50.0% | |
| AAGTCCTGACAGATGCATGC+TGG | - | chr2_1:56173454-56173473 | Msa0213350:intron | 50.0% | |
| AGTCCTGACAGATGCATGCT+GGG | - | chr2_1:56173455-56173474 | Msa0213350:intron | 50.0% | |
| GTGATTGAGGCAGGTGTATG+TGG | - | chr2_1:56173522-56173541 | Msa0213350:intron | 50.0% | |
| CACCCCTTGAGATGAGTAAG+TGG | - | chr2_1:56174126-56174145 | Msa0213350:intron | 50.0% | |
| CCCCACTTACTCATCTCAAG+GGG | + | chr2_1:56174131-56174150 | None:intergenic | 50.0% | |
| CCCCTTGAGATGAGTAAGTG+GGG | - | chr2_1:56174128-56174147 | Msa0213350:intron | 50.0% | |
| ACATCACAATATGCAGGGGC+CGG | + | chr2_1:56174158-56174177 | None:intergenic | 50.0% | |
| GCACTCTCCAATGCTACATC+TGG | - | chr2_1:56175643-56175662 | Msa0213350:intron | 50.0% | |
| CTCTCCAATGCTACATCTGG+CGG | - | chr2_1:56175646-56175665 | Msa0213350:intron | 50.0% | |
| TGCCTACTACTGCTCTTGGC+AGG | - | chr2_1:56172667-56172686 | Msa0213350:three_prime_UTR | 55.0% | |
| GACCTGCCAAGAGCAGTAGT+AGG | + | chr2_1:56172672-56172691 | None:intergenic | 55.0% | |
| TTCTTGGGGCTGTTTGCGTG+AGG | - | chr2_1:56172696-56172715 | Msa0213350:three_prime_UTR | 55.0% | |
| !! | GGAACTTAGCAGGTGTTGGC+AGG | - | chr2_1:56172717-56172736 | Msa0213350:three_prime_UTR | 55.0% |
| ! | CTGTTGGTCTGCTTCTGGTG+TGG | - | chr2_1:56172743-56172762 | Msa0213350:intron | 55.0% |
| CTCAGAGCGTGGGTCGTAAA+AGG | - | chr2_1:56172955-56172974 | Msa0213350:intron | 55.0% | |
| GCGCCACAATCCCTCTAACA+CGG | - | chr2_1:56173160-56173179 | Msa0213350:intron | 55.0% | |
| CGCCACAATCCCTCTAACAC+GGG | - | chr2_1:56173161-56173180 | Msa0213350:intron | 55.0% | |
| CTCCCGTGTTAGAGGGATTG+TGG | + | chr2_1:56173166-56173185 | None:intergenic | 55.0% | |
| ATCCAAGCGGTGATTGAGGC+AGG | - | chr2_1:56173513-56173532 | Msa0213350:intron | 55.0% | |
| ! | GGGATCAGCACTGAAGGAGA+TGG | + | chr2_1:56173663-56173682 | None:intergenic | 55.0% |
| ! | AGTGCAGGGATCAGCACTGA+AGG | + | chr2_1:56173669-56173688 | None:intergenic | 55.0% |
| GATGAGTAAGTGGGGAACCC+CGG | - | chr2_1:56174136-56174155 | Msa0213350:intron | 55.0% | |
| ATCACAATATGCAGGGGCCG+GGG | + | chr2_1:56174156-56174175 | None:intergenic | 55.0% | |
| CATCACAATATGCAGGGGCC+GGG | + | chr2_1:56174157-56174176 | None:intergenic | 55.0% | |
| GACCAGAGGAGCAATCAGTC+CGG | + | chr2_1:56175575-56175594 | None:intergenic | 55.0% | |
| GGTACCGCCAGATGTAGCAT+TGG | + | chr2_1:56175653-56175672 | None:intergenic | 55.0% | |
| !! | AGGTGTTGGCAGGGCTCTGT+TGG | - | chr2_1:56172727-56172746 | Msa0213350:intron | 60.0% |
| ! | GGGCTCTGTTGGTCTGCTTC+TGG | - | chr2_1:56172738-56172757 | Msa0213350:intron | 60.0% |
| GCTAGAGAAGCCGAGTGCGA+TGG | - | chr2_1:56172906-56172925 | Msa0213350:CDS | 60.0% | |
| ! | CGACCCACGCTCTGAGTTAG+TGG | + | chr2_1:56172951-56172970 | None:intergenic | 60.0% |
| GGATTGTGGCGCCCCATGTT+AGG | + | chr2_1:56173152-56173171 | None:intergenic | 60.0% | |
| ! | CGCTCAAGAGCTGGAAGTGC+TGG | + | chr2_1:56173411-56173430 | None:intergenic | 60.0% |
| GTGCCCAGCATGCATCTGTC+AGG | + | chr2_1:56173461-56173480 | None:intergenic | 60.0% | |
| CACCTGCCTCAATCACCGCT+TGG | + | chr2_1:56173518-56173537 | None:intergenic | 60.0% | |
| GGCAGGTGTATGTGGCAGAC+TGG | - | chr2_1:56173530-56173549 | Msa0213350:intron | 60.0% | |
| GCTGATCCCTGCACTTCGCA+CGG | - | chr2_1:56173674-56173693 | Msa0213350:CDS | 60.0% | |
| ATCCCTGCACTTCGCACGGT+GGG | - | chr2_1:56173678-56173697 | Msa0213350:CDS | 60.0% | |
| TTCCCACCGTGCGAAGTGCA+GGG | + | chr2_1:56173683-56173702 | None:intergenic | 60.0% | |
| TTTCCCACCGTGCGAAGTGC+AGG | + | chr2_1:56173684-56173703 | None:intergenic | 60.0% | |
| GGGAGATGATGCGCAGACTC+AGG | - | chr2_1:56173713-56173732 | Msa0213350:CDS | 60.0% | |
| AGCCGGACTGATTGCTCCTC+TGG | - | chr2_1:56175570-56175589 | Msa0213350:intron | 60.0% | |
| GATCCCTGCACTTCGCACGG+TGG | - | chr2_1:56173677-56173696 | Msa0213350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 56172648 | 56176079 | 56172648 | ID=Msa0213350;Name=Msa0213350 |
| chr2_1 | mRNA | 56172648 | 56176079 | 56172648 | ID=Msa0213350-mRNA-1;Parent=Msa0213350;Name=Msa0213350-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.85|0.75|1|0.85|0.75|8|94|212 |
| chr2_1 | exon | 56172648 | 56172737 | 56172648 | ID=Msa0213350-mRNA-1:exon:15609;Parent=Msa0213350-mRNA-1 |
| chr2_1 | exon | 56172889 | 56172962 | 56172889 | ID=Msa0213350-mRNA-1:exon:15608;Parent=Msa0213350-mRNA-1 |
| chr2_1 | exon | 56173041 | 56173168 | 56173041 | ID=Msa0213350-mRNA-1:exon:15607;Parent=Msa0213350-mRNA-1 |
| chr2_1 | exon | 56173606 | 56173734 | 56173606 | ID=Msa0213350-mRNA-1:exon:15606;Parent=Msa0213350-mRNA-1 |
| chr2_1 | exon | 56174993 | 56175071 | 56174993 | ID=Msa0213350-mRNA-1:exon:15605;Parent=Msa0213350-mRNA-1 |
| chr2_1 | exon | 56175162 | 56175325 | 56175162 | ID=Msa0213350-mRNA-1:exon:15604;Parent=Msa0213350-mRNA-1 |
| chr2_1 | exon | 56175415 | 56175442 | 56175415 | ID=Msa0213350-mRNA-1:exon:15603;Parent=Msa0213350-mRNA-1 |
| chr2_1 | exon | 56176039 | 56176079 | 56176039 | ID=Msa0213350-mRNA-1:exon:15602;Parent=Msa0213350-mRNA-1 |
| chr2_1 | CDS | 56176039 | 56176079 | 56176039 | ID=Msa0213350-mRNA-1:cds;Parent=Msa0213350-mRNA-1 |
| chr2_1 | CDS | 56175415 | 56175442 | 56175415 | ID=Msa0213350-mRNA-1:cds;Parent=Msa0213350-mRNA-1 |
| chr2_1 | CDS | 56175162 | 56175325 | 56175162 | ID=Msa0213350-mRNA-1:cds;Parent=Msa0213350-mRNA-1 |
| chr2_1 | CDS | 56174993 | 56175071 | 56174993 | ID=Msa0213350-mRNA-1:cds;Parent=Msa0213350-mRNA-1 |
| chr2_1 | CDS | 56173606 | 56173734 | 56173606 | ID=Msa0213350-mRNA-1:cds;Parent=Msa0213350-mRNA-1 |
| chr2_1 | CDS | 56173041 | 56173168 | 56173041 | ID=Msa0213350-mRNA-1:cds;Parent=Msa0213350-mRNA-1 |
| chr2_1 | CDS | 56172893 | 56172962 | 56172893 | ID=Msa0213350-mRNA-1:cds;Parent=Msa0213350-mRNA-1 |
| chr2_1 | three_prime_UTR | 56172889 | 56172892 | 56172889 | ID=Msa0213350-mRNA-1:three_prime_utr;Parent=Msa0213350-mRNA-1 |
| chr2_1 | three_prime_UTR | 56172648 | 56172737 | 56172648 | ID=Msa0213350-mRNA-1:three_prime_utr;Parent=Msa0213350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
