AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1427230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427230 MtrunA17_Chr2g0328241 94.838 678 35 0 1 678 1 678 0.0 1208
Msa1427230 MtrunA17_Chr2g0328251 78.242 694 135 1 1 678 1 694 0.0 1048
Msa1427230 MtrunA17_Chr4g0024031 75.354 706 110 4 1 678 1 670 0.0 969
Msa1427230 MtrunA17_Chr2g0327251 73.884 605 114 3 74 678 8 568 0.0 835
Msa1427230 MtrunA17_Chr2g0328231 73.590 390 62 4 305 678 2 366 0.0 529
Msa1427230 MtrunA17_Chr3g0111661 39.793 676 343 13 10 673 13 636 4.54e-151 452
Msa1427230 MtrunA17_Chr5g0435301 38.405 677 357 17 16 676 487 1119 1.34e-134 423
Msa1427230 MtrunA17_Chr4g0071151 76.046 263 47 3 420 678 3 253 2.07e-132 390
Msa1427230 MtrunA17_Chr4g0074301 36.553 673 352 16 16 676 19 628 3.16e-113 354
Msa1427230 MtrunA17_Chr4g0001231 35.479 668 352 18 21 676 24 624 9.07e-112 350
Msa1427230 MtrunA17_Chr4g0070931 35.830 681 346 17 16 676 19 628 3.28e-111 348
Msa1427230 MtrunA17_Chr4g0071141 79.130 115 24 0 306 420 3 117 5.57e-50 170
Msa1427230 MtrunA17_Chr3g0111741 42.857 231 115 5 447 676 123 337 7.98e-45 164
Msa1427230 MtrunA17_Chr3g0111731 36.134 238 125 7 440 676 2 213 4.83e-28 113
Msa1427230 MtrunA17_Chr1g0176351 59.140 93 35 2 1 93 1 90 1.81e-27 110
Msa1427230 MtrunA17_Chr8g0389491 62.791 86 29 2 3 88 65 147 3.18e-25 103
Msa1427230 MtrunA17_Chr4g0074271 25.761 427 235 12 16 428 36 394 7.76e-23 102
Msa1427230 MtrunA17_Chr4g0074271 62.500 64 24 0 603 666 384 447 1.14e-18 89.4
Msa1427230 MtrunA17_Chr3g0111691 50.000 76 37 1 601 676 15 89 4.12e-17 77.4
Msa1427230 MtrunA17_Chr8g0356091 57.500 80 34 0 65 144 3 82 1.29e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427230 AT1G13790.2 48.393 529 251 6 145 669 216 726 1.62e-145 441
Msa1427230 AT1G13790.2 49.333 75 33 3 17 88 11 83 4.65e-11 66.6
Msa1427230 AT1G13790.1 48.393 529 251 6 145 669 216 726 1.62e-145 441
Msa1427230 AT1G13790.1 49.333 75 33 3 17 88 11 83 4.65e-11 66.6
Msa1427230 AT3G48670.2 35.407 675 368 14 16 676 24 644 2.03e-115 360
Msa1427230 AT3G48670.1 35.407 675 368 14 16 676 24 644 2.03e-115 360
Msa1427230 AT3G48670.3 35.407 675 368 14 16 676 24 644 2.03e-115 360
Msa1427230 AT3G12550.5 35.103 678 376 14 16 677 8 637 3.52e-113 354
Msa1427230 AT3G12550.4 35.052 679 376 15 16 677 8 638 2.48e-112 352
Msa1427230 AT3G12550.2 35.052 679 376 15 16 677 8 638 2.48e-112 352
Msa1427230 AT3G12550.1 35.052 679 376 15 16 677 8 638 2.48e-112 352
Msa1427230 AT1G15910.1 34.661 678 366 14 16 677 18 634 5.67e-110 346
Msa1427230 AT5G59390.2 38.783 526 296 9 148 667 34 539 1.66e-107 337
Msa1427230 AT5G59390.4 38.783 526 296 9 148 667 34 539 1.66e-107 337
Msa1427230 AT5G59390.3 38.783 526 296 9 148 667 34 539 1.66e-107 337
Msa1427230 AT4G00380.1 34.570 674 374 14 15 677 18 635 5.22e-106 335
Msa1427230 AT4G00380.3 34.570 674 374 14 15 677 18 635 5.22e-106 335
Msa1427230 AT5G59390.1 38.418 531 296 10 148 667 34 544 3.04e-105 331
Msa1427230 AT5G59390.5 38.418 531 296 10 148 667 34 544 3.04e-105 331
Msa1427230 AT4G00380.2 37.477 539 308 8 147 677 90 607 8.79e-104 329
Msa1427230 AT1G80790.1 35.484 682 355 16 15 677 19 634 1.42e-102 327
Msa1427230 AT1G80790.2 35.484 682 355 16 15 677 19 634 1.42e-102 327
Msa1427230 AT4G01180.1 37.823 542 281 11 148 667 32 539 5.63e-100 317
Msa1427230 AT3G12550.3 32.601 592 335 14 16 591 8 551 1.61e-79 264
Msa1427230 AT4G01780.1 31.828 465 208 10 215 676 111 469 3.39e-59 207
Msa1427230 AT1G80790.3 31.130 469 252 13 15 464 19 435 1.32e-55 197
Msa1427230 AT3G29375.3 43.810 210 96 4 468 676 38 226 9.21e-42 152
Msa1427230 AT3G29375.1 43.868 212 97 4 466 676 159 349 7.11e-40 150
Msa1427230 AT3G29375.2 39.231 130 59 3 466 594 36 146 1.31e-14 72.8
Msa1427230 AT2G16490.1 41.667 72 42 0 602 673 74 145 3.04e-13 68.9

Find 171 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGCCATTGTTGAATT+TGG 0.062386 tig0026171:-64622 Msa1427230:CDS
TTCATCAGTCTTCTGCTTTA+AGG 0.090360 tig0026171:+64336 None:intergenic
AGAGGGATTACTTAGGTTTA+AGG 0.106130 tig0026171:-64531 Msa1427230:CDS
GAGACATGCTTCCAGAATTT+TGG 0.107290 tig0026171:-65058 Msa1427230:CDS
ATTTCCATTGCCTAATTAAA+TGG 0.115767 tig0026171:+61609 None:intergenic
GTGGATTTGAAAACAGTTTC+TGG 0.144084 tig0026171:-64415 Msa1427230:CDS
GAAGTTAGAGAGGAGCTTTC+AGG 0.211680 tig0026171:-64569 Msa1427230:CDS
ATGTTAAAGTTGATAGAATT+AGG 0.264382 tig0026171:-64963 Msa1427230:CDS
TAGGCAATGGAAATCAAATA+AGG 0.267301 tig0026171:-61600 Msa1427230:CDS
TCATGATGACTATAATTTAA+AGG 0.274839 tig0026171:-64467 Msa1427230:CDS
ATGGCTCGAGGAGCCTTCTT+TGG 0.276297 tig0026171:+62271 None:intergenic
ATATCATGTAGGAGTACTTT+TGG 0.281384 tig0026171:-61412 Msa1427230:three_prime_UTR
AAACTTATTGAGGCTTCATT+TGG 0.288030 tig0026171:-61571 Msa1427230:exon
CCAACCATTGGCATTGTGAT+TGG 0.291418 tig0026171:+61472 None:intergenic
GTTGATAGAATTAGGTTATC+TGG 0.300562 tig0026171:-64955 Msa1427230:CDS
GAGCGAGGAGATAGACTATT+TGG 0.320283 tig0026171:-64502 Msa1427230:CDS
GCAGGTTGAACGCGAGTATC+AGG 0.324478 tig0026171:-63991 Msa1427230:CDS
AGTCTTCTGCTTTAAGGTAT+TGG 0.341440 tig0026171:+64342 None:intergenic
ACGGCTGAAAGGAGCTTTCC+AGG 0.341751 tig0026171:-63270 Msa1427230:CDS
GGAAATTTGAAATTGTCTAT+TGG 0.348064 tig0026171:-61369 Msa1427230:three_prime_UTR
AAAGTTTGAAGGATGAGTTC+GGG 0.354846 tig0026171:-61763 Msa1427230:CDS
GAAGAATCATAAGAAAATTA+AGG 0.355037 tig0026171:-64713 Msa1427230:CDS
AAAACTGGAGGAAATCAAAA+TGG 0.356376 tig0026171:-63207 Msa1427230:CDS
AAAGCAGAAGACTGATGAAT+TGG 0.362538 tig0026171:-64332 Msa1427230:CDS
AGGGTGTTTCCCATTTAATT+AGG 0.364498 tig0026171:-61619 Msa1427230:CDS
GAGGGATTACTTAGGTTTAA+GGG 0.365824 tig0026171:-64530 Msa1427230:CDS
TCCCTAAAATTCCAGAGTTC+CGG 0.369716 tig0026171:+61665 None:intergenic
AAAGCGAAGACGCTTGTCTT+TGG 0.372401 tig0026171:-64370 Msa1427230:CDS
AGCTCAAAATCTCTGATTCC+AGG 0.381907 tig0026171:-65134 Msa1427230:CDS
CACAGCGTTGTAACTCTAAT+CGG 0.385225 tig0026171:+64664 None:intergenic
TGAAATAGCTAGGCGGGAAC+TGG 0.386220 tig0026171:-63949 Msa1427230:CDS
CATTTCCAGAAAATTTCCTT+AGG 0.386875 tig0026171:-65752 Msa1427230:five_prime_UTR
TGCAAAACAAGCATTGGAAT+TGG 0.388740 tig0026171:-63300 Msa1427230:CDS
ACGCGAGTCACCCAAAATTC+TGG 0.391249 tig0026171:+65047 None:intergenic
TGGCTCGAGGAGCCTTCTTT+GGG 0.396617 tig0026171:+62272 None:intergenic
TTTCCTTGTTCGCAGTGGAT+TGG 0.397924 tig0026171:-62298 Msa1427230:intron
AACTTTGAACGGATGCCAGC+TGG 0.400936 tig0026171:+62075 None:intergenic
GCAAAGGGTGTTTGTCCTCT+AGG 0.401490 tig0026171:+64637 None:intergenic
CTCCAATGTGATTCATTACC+TGG 0.402190 tig0026171:+63252 None:intergenic
TTTGATCCATCACTTTCCTT+AGG 0.403042 tig0026171:+64272 None:intergenic
TTCATCAGAAAACTTTCTCT+TGG 0.404556 tig0026171:+62195 None:intergenic
ATTCTAGCTGTAACTGACTT+TGG 0.405113 tig0026171:-61501 Msa1427230:three_prime_UTR
TTTCCATTGCCTAATTAAAT+GGG 0.407148 tig0026171:+61610 None:intergenic
CAAAGGGTGTTTGTCCTCTA+GGG 0.435599 tig0026171:+64638 None:intergenic
GAAGACGCTTGTCTTTGGTT+TGG 0.437340 tig0026171:-64365 Msa1427230:CDS
ATCAAAACATACTCATGATT+CGG 0.438153 tig0026171:-65217 Msa1427230:CDS
AGGAGGAGCTGAACATGAAA+GGG 0.453703 tig0026171:-64693 Msa1427230:CDS
AAAAGTTTGAAGGATGAGTT+CGG 0.454559 tig0026171:-61764 Msa1427230:CDS
TTGCATCAAGTCCTCTCTCC+AGG 0.454987 tig0026171:+63318 None:intergenic
TCCAAATTCAACAATGGCAA+AGG 0.455840 tig0026171:+64621 None:intergenic
GGAAATCAAAATGGAGCTGC+AGG 0.455953 tig0026171:-63198 Msa1427230:CDS
TATAATTTAAAGGATATAGT+TGG 0.456368 tig0026171:-64457 Msa1427230:CDS
TTACTTAGGTTTAAGGGAGC+AGG 0.460984 tig0026171:-64524 Msa1427230:CDS
AAATTCCAGAGTTCCGGTAC+TGG 0.463412 tig0026171:+61671 None:intergenic
AACTTATTGAGGCTTCATTT+GGG 0.464471 tig0026171:-61570 Msa1427230:exon
ACGTATTATGAATGTCGATA+AGG 0.465602 tig0026171:-64848 Msa1427230:CDS
GTCTTTGGCTGAAGAACATA+AGG 0.465805 tig0026171:-63467 Msa1427230:intron
CCAAATTCAACAATGGCAAA+GGG 0.469750 tig0026171:+64622 None:intergenic
TAGATATTACGAAGACTTGA+AGG 0.470004 tig0026171:-65175 Msa1427230:CDS
AGAAGAGGAGTTGGAAGGCG+TGG 0.472369 tig0026171:-63171 Msa1427230:CDS
GACACTAGAAAATGATGAAA+CGG 0.472967 tig0026171:+65841 None:intergenic
CTGGCCATGGATGGTCATAT+TGG 0.473776 tig0026171:-64782 Msa1427230:CDS
AGGCAGAGCACTGTGGTAAG+AGG 0.475875 tig0026171:-64549 Msa1427230:CDS
GAGCCATAATTTCTGTGAAA+AGG 0.480154 tig0026171:-62255 Msa1427230:CDS
CATAATTTCTGTGAAAAGGA+TGG 0.481577 tig0026171:-62251 Msa1427230:CDS
ATGAGTTGTTTGTCTGGCCA+TGG 0.481884 tig0026171:-64795 Msa1427230:CDS
AGGCAATGGAAATCAAATAA+GGG 0.482017 tig0026171:-61599 Msa1427230:CDS
AGATTTGAACGCGGAATCAA+CGG 0.490502 tig0026171:+65673 None:intergenic
TTGATGATGAGTTGTTTGTC+TGG 0.490771 tig0026171:-64801 Msa1427230:CDS
CGTATTATGAATGTCGATAA+GGG 0.494169 tig0026171:-64847 Msa1427230:CDS
TTGAATGTTGCAGAAAGAAA+AGG 0.497168 tig0026171:-63366 Msa1427230:intron
GAAGGATGAGTTCGGGGATG+AGG 0.499124 tig0026171:-61756 Msa1427230:CDS
AATTATGGTGTTACCTTGTG+CGG 0.501085 tig0026171:+65621 None:intergenic
TGAACTCAAGTCCCGTGAAA+AGG 0.503695 tig0026171:-63913 Msa1427230:CDS
CGAAAAGCGGAAAGTATGTT+GGG 0.505354 tig0026171:-64735 Msa1427230:CDS
GCAAAACGGACAGCGATACC+TGG 0.507749 tig0026171:+65116 None:intergenic
ATTTCCAGAAAATTTCCTTA+GGG 0.509069 tig0026171:-65751 Msa1427230:five_prime_UTR
CTTTGAAAATGTATATTGAA+AGG 0.510087 tig0026171:-64993 Msa1427230:CDS
TTTCCCATTTAATTAGGCAA+TGG 0.511049 tig0026171:-61613 Msa1427230:CDS
CCGAAAAGCGGAAAGTATGT+TGG 0.511071 tig0026171:-64736 Msa1427230:CDS
CAGAGAAAATAAACGTGACC+TGG 0.511365 tig0026171:+65991 None:intergenic
GGTACCCAGTACCGGAACTC+TGG 0.513974 tig0026171:-61676 Msa1427230:CDS
AAGGGAAAGAAAACTTATTG+AGG 0.514142 tig0026171:-61581 Msa1427230:exon
GGATCATGAAATAGCTAGGC+GGG 0.517645 tig0026171:-63955 Msa1427230:CDS
TTATCAGTCTCAACTTTGAA+CGG 0.522646 tig0026171:+62064 None:intergenic
AAGGAGGAGCTGAACATGAA+AGG 0.522988 tig0026171:-64694 Msa1427230:CDS
ACTTGATGCAAAACAAGCAT+TGG 0.525557 tig0026171:-63306 Msa1427230:CDS
GGCAATAGAAGAGCAACAAA+AGG 0.535693 tig0026171:-63506 Msa1427230:CDS
TAATCCTTGTTGTAGCAAAA+CGG 0.536850 tig0026171:+65102 None:intergenic
CGAAGGATCATGAAATAGCT+AGG 0.538005 tig0026171:-63959 Msa1427230:CDS
TTTGGGTGACTCGCGTGAGA+CGG 0.539435 tig0026171:-65040 Msa1427230:CDS
ACTTTGAACGGATGCCAGCT+GGG 0.546027 tig0026171:+62076 None:intergenic
AAAATAAACGTGACCTGGGT+GGG 0.546156 tig0026171:+65996 None:intergenic
TGCATTCCTAAGGAAAGTGA+TGG 0.547893 tig0026171:-64278 Msa1427230:CDS
TGATAGAATTGCTAGTGATA+AGG 0.548910 tig0026171:-64932 Msa1427230:CDS
TGTGGTAAGAGGGATTACTT+AGG 0.550144 tig0026171:-64538 Msa1427230:CDS
AGAAATCAGCAAGATGCGGC+AGG 0.552419 tig0026171:-64009 Msa1427230:CDS
AGGAAGGAAAGCCTCGTTGA+AGG 0.554478 tig0026171:-61642 Msa1427230:CDS
GGCAGAGCACTGTGGTAAGA+GGG 0.555245 tig0026171:-64548 Msa1427230:CDS
TAGTGGTAGGTACCCAGTAC+CGG 0.555492 tig0026171:-61684 Msa1427230:CDS
TTCACAGAAATTATGGCTCG+AGG 0.555555 tig0026171:+62259 None:intergenic
GTGGATTGGATGCCCAAAGA+AGG 0.556146 tig0026171:-62284 Msa1427230:CDS
AATAATTACTAATATCATGT+AGG 0.556605 tig0026171:-61423 Msa1427230:three_prime_UTR
TGCAGTAGCTACAGCTCTGA+AGG 0.557138 tig0026171:-61726 Msa1427230:CDS
GGTACTGGGTACCTACCACT+AGG 0.560561 tig0026171:+61686 None:intergenic
AGATAGACTATTTGGCTGGA+TGG 0.561061 tig0026171:-64494 Msa1427230:CDS
GGTTCAAACTTAGAAACGAG+TGG 0.562727 tig0026171:-61390 Msa1427230:three_prime_UTR
ATTATGGTGTTACCTTGTGC+GGG 0.563111 tig0026171:+65622 None:intergenic
GAAGTATTAACACCAACCAT+TGG 0.572339 tig0026171:+61460 None:intergenic
ATGAAGAATACGAAACCCTA+AGG 0.572830 tig0026171:+65736 None:intergenic
GAAAAGAAGCTGAGGACACA+AGG 0.574290 tig0026171:-64393 Msa1427230:CDS
ATAGAATTAGACTTAAATGC+AGG 0.574755 tig0026171:-61537 Msa1427230:three_prime_UTR
ATGAGGCTAATGCATTCCTA+AGG 0.574769 tig0026171:-64288 Msa1427230:CDS
GTTGTTTGTCTGGCCATGGA+TGG 0.574875 tig0026171:-64791 Msa1427230:CDS
ATAATTTCTGTGAAAAGGAT+GGG 0.575703 tig0026171:-62250 Msa1427230:CDS
AATTCCAGAGTTCCGGTACT+GGG 0.576644 tig0026171:+61672 None:intergenic
CAAACACCTGAAGGAAAATG+TGG 0.582813 tig0026171:-64434 Msa1427230:CDS
CAATCGAGTGGTGCTCAAAG+TGG 0.583300 tig0026171:-62117 Msa1427230:CDS
CTAGGCGGGAACTGGAAGCT+CGG 0.585718 tig0026171:-63941 Msa1427230:CDS
TATAGTTGGCAAACACCTGA+AGG 0.588147 tig0026171:-64443 Msa1427230:CDS
AAGTTGAGACTGATAAAGAC+GGG 0.588269 tig0026171:-62057 Msa1427230:CDS
AATCGAGTGGTGCTCAAAGT+GGG 0.588592 tig0026171:-62116 Msa1427230:CDS
TTGAGTAATCTTCCCGCACA+AGG 0.590110 tig0026171:-65634 Msa1427230:intron
AAAATTCATGACCTGGAGAG+AGG 0.591924 tig0026171:-63329 Msa1427230:CDS
CCAATCACAATGCCAATGGT+TGG 0.592253 tig0026171:-61472 Msa1427230:three_prime_UTR
TTAGCCAATATGACCATCCA+TGG 0.593136 tig0026171:+64778 None:intergenic
GAGGAGATAGACTATTTGGC+TGG 0.593752 tig0026171:-64498 Msa1427230:CDS
TTATTGAGGCTTCATTTGGG+TGG 0.594676 tig0026171:-61567 Msa1427230:exon
CATTGGAATTGGAGATAGAA+CGG 0.595258 tig0026171:-63289 Msa1427230:CDS
GAAAATAAACGTGACCTGGG+TGG 0.601475 tig0026171:+65995 None:intergenic
CTTGAAGGATGATTACTACA+AGG 0.601753 tig0026171:-65160 Msa1427230:CDS
TTCCAGGTAATGAATCACAT+TGG 0.602846 tig0026171:-63254 Msa1427230:CDS
TTGGAGATAGAACGGCTGAA+AGG 0.603749 tig0026171:-63281 Msa1427230:CDS
TGTTGAATTTGGAAAAGAGT+GGG 0.604730 tig0026171:-64611 Msa1427230:CDS
ACTGTCTTAAAGATCCCAGC+TGG 0.606195 tig0026171:-62090 Msa1427230:CDS
GGTTTAAGGGAGCAGGAGCG+AGG 0.606961 tig0026171:-64517 Msa1427230:CDS
AAAGTTGAGACTGATAAAGA+CGG 0.607016 tig0026171:-62058 Msa1427230:CDS
ATTGCTAGTGATAAGGTACC+TGG 0.607340 tig0026171:-64925 Msa1427230:CDS
TCACAAGAAAATTCATGACC+TGG 0.607531 tig0026171:-63336 Msa1427230:CDS
AAGGAAAGCCTCGTTGAAGG+AGG 0.608173 tig0026171:-61639 Msa1427230:CDS
TGATAAAGACGGGAAATCCA+TGG 0.608822 tig0026171:-62047 Msa1427230:intron
CAATCCAATCACAATGCCAA+TGG 0.614220 tig0026171:-61476 Msa1427230:three_prime_UTR
TTGTTGAATTTGGAAAAGAG+TGG 0.617280 tig0026171:-64612 Msa1427230:CDS
AGGAAAGCCTCGTTGAAGGA+GGG 0.621359 tig0026171:-61638 Msa1427230:CDS
GGAAGATCTTCAACAGACAC+TGG 0.622918 tig0026171:-63150 Msa1427230:CDS
GGGTGGGTACTTCTTCACTA+AGG 0.625617 tig0026171:+66012 None:intergenic
ACAATGCTATGAAGTTAGAG+AGG 0.632206 tig0026171:-64579 Msa1427230:CDS
GGCAATTGAAAGCAATCGAG+TGG 0.635070 tig0026171:-62129 Msa1427230:CDS
TTGTTGTTTACAGAATGAGA+TGG 0.635228 tig0026171:-63527 Msa1427230:intron
GTACTGGGTACCTACCACTA+GGG 0.635409 tig0026171:+61687 None:intergenic
GTATCAGGAGAAAGTATCGA+AGG 0.637654 tig0026171:-63976 Msa1427230:CDS
GAATTTGGAAAAGAGTGGGA+TGG 0.639455 tig0026171:-64607 Msa1427230:CDS
TCACTAGCATTACTAACACC+AGG 0.643930 tig0026171:+64907 None:intergenic
ACGAGTACAACCCTAGTGGT+AGG 0.644559 tig0026171:-61697 Msa1427230:CDS
AAGTTTGAAGGATGAGTTCG+GGG 0.648246 tig0026171:-61762 Msa1427230:CDS
GACAGCAAGCAAATATGATG+AGG 0.653895 tig0026171:-64305 Msa1427230:CDS
AGAGAAAATAAACGTGACCT+GGG 0.656489 tig0026171:+65992 None:intergenic
AGTTTCTGGAAAAGAAGCTG+AGG 0.656933 tig0026171:-64401 Msa1427230:CDS
GAATCAACGGCGAATACCAG+AGG 0.663429 tig0026171:+65686 None:intergenic
GAATCATAAGAAAATTAAGG+AGG 0.665895 tig0026171:-64710 Msa1427230:CDS
CATTAGAAATCAGCAAGATG+CGG 0.680318 tig0026171:-64013 Msa1427230:intron
TAGTGAAGAAGTACCCACCC+AGG 0.687341 tig0026171:-66009 Msa1427230:five_prime_UTR
GGCGGGAACTGGAAGCTCGG+AGG 0.688311 tig0026171:-63938 Msa1427230:CDS
ACTAATTATCATATGACACG+TGG 0.688906 tig0026171:+66095 None:intergenic
CGATTAGAGTTACAACGCTG+TGG 0.699428 tig0026171:-64663 Msa1427230:CDS
ACAACGCTGTGGAACCCTAG+AGG 0.703885 tig0026171:-64652 Msa1427230:CDS
AGGATCATGAAATAGCTAGG+CGG 0.734039 tig0026171:-63956 Msa1427230:CDS
GGAAACACCCTCCTTCAACG+AGG 0.744953 tig0026171:+61631 None:intergenic
TTAAACGAGTACAACCCTAG+TGG 0.763773 tig0026171:-61701 Msa1427230:CDS
AGCTTTCAGGCAGAGCACTG+TGG 0.768741 tig0026171:-64556 Msa1427230:CDS
AAGATGAAGAGATTTGAACG+CGG 0.778312 tig0026171:+65664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTTTGATATTTCA+TGG - tig0026171:63419-63438 Msa1427230:intron 10.0%
!! TAAGTTATTAAAAAATAAGA+TGG + tig0026171:63908-63927 None:intergenic 10.0%
!!! TATTTTTTAATAACTTATGA+CGG - tig0026171:63911-63930 Msa1427230:CDS 10.0%
!!! TTGTTTTTTTTTTTGAAGAA+TGG + tig0026171:61565-61584 None:intergenic 15.0%
!! TATAATTTAAAGGATATAGT+TGG - tig0026171:63023-63042 Msa1427230:intron 15.0%
!! TTATTATATATCTATCTTCT+CGG - tig0026171:63342-63361 Msa1427230:CDS 15.0%
!!! AAGAAAAATGTAATGTATTT+TGG - tig0026171:63646-63665 Msa1427230:intron 15.0%
!!! TAAATTTGCTTCTTTAAAAA+TGG - tig0026171:63804-63823 Msa1427230:intron 15.0%
!! TATTAAAAAATAAGATGGAT+TGG + tig0026171:63903-63922 None:intergenic 15.0%
!!! ATGTTAATATTAATGTCTTT+TGG - tig0026171:64450-64469 Msa1427230:CDS 15.0%
!! AACTTTAACAATATTAATTC+TGG + tig0026171:65469-65488 None:intergenic 15.0%
!! AATAATTACTAATATCATGT+AGG - tig0026171:66057-66076 Msa1427230:five_prime_UTR 15.0%
!!! AGATAATAGTTTTTGAATGA+AGG + tig0026171:61589-61608 None:intergenic 20.0%
!!! AAAAGAAAATTTTCTGGTTT+TGG + tig0026171:61682-61701 None:intergenic 20.0%
!! AATAGAAGTTATGGTAAAAA+GGG + tig0026171:61934-61953 None:intergenic 20.0%
!!! TTTTGATTGAATAGAAGTTA+TGG + tig0026171:61943-61962 None:intergenic 20.0%
!!! CTTTGAAAATGTATATTGAA+AGG - tig0026171:62487-62506 Msa1427230:intron 20.0%
!!! ATGTTAAAGTTGATAGAATT+AGG - tig0026171:62517-62536 Msa1427230:intron 20.0%
!! GAAGAATCATAAGAAAATTA+AGG - tig0026171:62767-62786 Msa1427230:intron 20.0%
!! TCATGATGACTATAATTTAA+AGG - tig0026171:63013-63032 Msa1427230:intron 20.0%
!! TGAACTGTTCTAATTAATAT+TGG - tig0026171:63279-63298 Msa1427230:CDS 20.0%
!! TAATAAAAACCAGAATGTTT+CGG + tig0026171:63328-63347 None:intergenic 20.0%
!! AATTAAGAACTGTAGATAAA+AGG + tig0026171:64054-64073 None:intergenic 20.0%
!!! ATACACTTATCAATTTTTTG+CGG + tig0026171:64396-64415 None:intergenic 20.0%
!!! ACTTTGTAAAAGATTAGTTA+TGG + tig0026171:64522-64541 None:intergenic 20.0%
!!! TGAATTAAAATCATCACTTT+TGG + tig0026171:64948-64967 None:intergenic 20.0%
!!! TCACATTTTAGTTGAAAATT+TGG - tig0026171:64975-64994 Msa1427230:CDS 20.0%
!! TTCATAATAATTACAAAGCA+TGG - tig0026171:65533-65552 Msa1427230:intron 20.0%
!! TCATAATAATTACAAAGCAT+GGG - tig0026171:65534-65553 Msa1427230:intron 20.0%
!! ATGTAACATATATTAGATCA+CGG + tig0026171:65655-65674 None:intergenic 20.0%
!! ATACGTTGAAAAATTATCAA+AGG - tig0026171:66140-66159 Msa1427230:five_prime_UTR 20.0%
!!! TTTTTTTTGAAGAATGGTGA+AGG + tig0026171:61559-61578 None:intergenic 25.0%
!! TGTGTGAAAAGAAAATTTTC+TGG + tig0026171:61688-61707 None:intergenic 25.0%
! ATTTCCAGAAAATTTCCTTA+GGG - tig0026171:61729-61748 Msa1427230:CDS 25.0%
! GAATAGAAGTTATGGTAAAA+AGG + tig0026171:61935-61954 None:intergenic 25.0%
!! AGTTTTTACTGTATTTTCCA+TGG - tig0026171:62150-62169 Msa1427230:CDS 25.0%
!!! ATGAGTATGTTTTGATCTTT+TGG + tig0026171:62259-62278 None:intergenic 25.0%
! ATCAAAACATACTCATGATT+CGG - tig0026171:62263-62282 Msa1427230:CDS 25.0%
! GAATCATAAGAAAATTAAGG+AGG - tig0026171:62770-62789 Msa1427230:intron 25.0%
! AATATTGGTATTCTGTTTCA+TGG - tig0026171:63294-63313 Msa1427230:CDS 25.0%
! TGATGAAAAAATGATGTCTT+TGG - tig0026171:63998-64017 Msa1427230:CDS 25.0%
!!! TTCAGTTTTGAGAACTTTTT+CGG - tig0026171:64091-64110 Msa1427230:intron 25.0%
!!! TACACTTATCAATTTTTTGC+GGG + tig0026171:64395-64414 None:intergenic 25.0%
!! AGTTATGGAAGACATTTTAA+AGG + tig0026171:64507-64526 None:intergenic 25.0%
!! AACTAATCTTTTACAAAGTC+AGG - tig0026171:64523-64542 Msa1427230:CDS 25.0%
!! ATTTCTGCTTAAGTTTTACA+AGG + tig0026171:64570-64589 None:intergenic 25.0%
!! GAAATCTTATTTATCTTGCT+TGG - tig0026171:64684-64703 Msa1427230:CDS 25.0%
!!! AAACACCGTATATTTTGAAT+TGG + tig0026171:64750-64769 None:intergenic 25.0%
! GTTGAAAAATTGTAATTCCT+TGG + tig0026171:64791-64810 None:intergenic 25.0%
!!! ACTTATTTTGCTTGAAGTTT+GGG + tig0026171:65097-65116 None:intergenic 25.0%
!!! AACTTATTTTGCTTGAAGTT+TGG + tig0026171:65098-65117 None:intergenic 25.0%
! ATAATTTCTGTGAAAAGGAT+GGG - tig0026171:65230-65249 Msa1427230:CDS 25.0%
! TGAAAAGCTAAAAAGTTTGA+AGG - tig0026171:65706-65725 Msa1427230:five_prime_UTR 25.0%
! TTTCCATTGCCTAATTAAAT+GGG + tig0026171:65873-65892 None:intergenic 25.0%
! ATTTCCATTGCCTAATTAAA+TGG + tig0026171:65874-65893 None:intergenic 25.0%
! ATAGAATTAGACTTAAATGC+AGG - tig0026171:65943-65962 Msa1427230:five_prime_UTR 25.0%
!! GGAAATTTGAAATTGTCTAT+TGG - tig0026171:66111-66130 Msa1427230:five_prime_UTR 25.0%
ACTAATTATCATATGACACG+TGG + tig0026171:61388-61407 None:intergenic 30.0%
GACACTAGAAAATGATGAAA+CGG + tig0026171:61642-61661 None:intergenic 30.0%
!! CTAAGGAAATTTTCTGGAAA+TGG + tig0026171:61730-61749 None:intergenic 30.0%
CATTTCCAGAAAATTTCCTT+AGG - tig0026171:61728-61747 Msa1427230:CDS 30.0%
CGATTAACCAGTAGAAATTA+TGG + tig0026171:61877-61896 None:intergenic 30.0%
TACATTCAGTGATTAAATCG+AGG + tig0026171:62022-62041 None:intergenic 30.0%
CAGTAACTGAAAATAAACCA+TGG + tig0026171:62170-62189 None:intergenic 30.0%
TAGATATTACGAAGACTTGA+AGG - tig0026171:62305-62324 Msa1427230:intron 30.0%
! TAATCCTTGTTGTAGCAAAA+CGG + tig0026171:62381-62400 None:intergenic 30.0%
! GTTGATAGAATTAGGTTATC+TGG - tig0026171:62525-62544 Msa1427230:intron 30.0%
TGATAGAATTGCTAGTGATA+AGG - tig0026171:62548-62567 Msa1427230:intron 30.0%
ACGTATTATGAATGTCGATA+AGG - tig0026171:62632-62651 Msa1427230:intron 30.0%
CGTATTATGAATGTCGATAA+GGG - tig0026171:62633-62652 Msa1427230:intron 30.0%
! CTCTTTTCCAAATTCAACAA+TGG + tig0026171:62868-62887 None:intergenic 30.0%
TTGTTGAATTTGGAAAAGAG+TGG - tig0026171:62868-62887 Msa1427230:intron 30.0%
TGTTGAATTTGGAAAAGAGT+GGG - tig0026171:62869-62888 Msa1427230:intron 30.0%
! CTTATCATTCTGTTGCATTT+TGG - tig0026171:63370-63389 Msa1427230:intron 30.0%
!!! ATTTTGGCTCTGTGAATTTA+TGG - tig0026171:63662-63681 Msa1427230:intron 30.0%
!!! TTGAACACACTTTTTCTGAT+AGG - tig0026171:63726-63745 Msa1427230:intron 30.0%
!! CTAACAACACTTTTTGTGAT+TGG + tig0026171:63831-63850 None:intergenic 30.0%
ATTTGACACAAAAGACCAAA+TGG + tig0026171:63872-63891 None:intergenic 30.0%
!! TTGTTGTTTACAGAATGAGA+TGG - tig0026171:63953-63972 Msa1427230:CDS 30.0%
TTGAATGTTGCAGAAAGAAA+AGG - tig0026171:64114-64133 Msa1427230:intron 30.0%
TCTAGAAGAGAAGAAAAAAC+TGG - tig0026171:64258-64277 Msa1427230:CDS 30.0%
AAAACTGGAGGAAATCAAAA+TGG - tig0026171:64273-64292 Msa1427230:CDS 30.0%
! ATCTTTTACAAAGTCAGGAT+AGG - tig0026171:64528-64547 Msa1427230:CDS 30.0%
GATTTGAATGTTTGCAAAAC+AGG + tig0026171:64656-64675 None:intergenic 30.0%
TATTTATCTTGCTTGGAAGA+CGG - tig0026171:64691-64710 Msa1427230:CDS 30.0%
TTGTTCACGTGAATTTACAA+CGG - tig0026171:64724-64743 Msa1427230:CDS 30.0%
AACGGCCAATTCAAAATATA+CGG - tig0026171:64742-64761 Msa1427230:CDS 30.0%
AACCTTAGTTTCTATATCCA+AGG - tig0026171:64771-64790 Msa1427230:CDS 30.0%
TTCCTTGGATATAGAAACTA+AGG + tig0026171:64776-64795 None:intergenic 30.0%
GATTCACATAATAGGATGAT+AGG + tig0026171:64813-64832 None:intergenic 30.0%
ATCCTATTATGTGAATCATG+TGG - tig0026171:64816-64835 Msa1427230:CDS 30.0%
AACCACATGATTCACATAAT+AGG + tig0026171:64821-64840 None:intergenic 30.0%
TGAATTAAAACCATCACCTT+TGG + tig0026171:64884-64903 None:intergenic 30.0%
TTTGTCATATTGCTTCATAC+TGG - tig0026171:65049-65068 Msa1427230:CDS 30.0%
ACTTCAAGCAAAATAAGTTC+AGG - tig0026171:65099-65118 Msa1427230:CDS 30.0%
CAAACCAAACAATGAAATCA+TGG + tig0026171:65149-65168 None:intergenic 30.0%
! CATCCTTTTCACAGAAATTA+TGG + tig0026171:65231-65250 None:intergenic 30.0%
CATAATTTCTGTGAAAAGGA+TGG - tig0026171:65229-65248 Msa1427230:CDS 30.0%
!! ACTTGAGATTAAGCCATTTT+TGG - tig0026171:65256-65275 Msa1427230:intron 30.0%
TTCATCAGAAAACTTTCTCT+TGG + tig0026171:65288-65307 None:intergenic 30.0%
TTATCAGTCTCAACTTTGAA+CGG + tig0026171:65419-65438 None:intergenic 30.0%
AAAGTTGAGACTGATAAAGA+CGG - tig0026171:65422-65441 Msa1427230:intron 30.0%
ATATGTTACATATATCACGC+AGG - tig0026171:65664-65683 Msa1427230:five_prime_UTR 30.0%
AAAAGTTTGAAGGATGAGTT+CGG - tig0026171:65716-65735 Msa1427230:five_prime_UTR 30.0%
TTTCCCATTTAATTAGGCAA+TGG - tig0026171:65867-65886 Msa1427230:five_prime_UTR 30.0%
TAGGCAATGGAAATCAAATA+AGG - tig0026171:65880-65899 Msa1427230:five_prime_UTR 30.0%
AGGCAATGGAAATCAAATAA+GGG - tig0026171:65881-65900 Msa1427230:five_prime_UTR 30.0%
AAGGGAAAGAAAACTTATTG+AGG - tig0026171:65899-65918 Msa1427230:five_prime_UTR 30.0%
AAACTTATTGAGGCTTCATT+TGG - tig0026171:65909-65928 Msa1427230:five_prime_UTR 30.0%
AACTTATTGAGGCTTCATTT+GGG - tig0026171:65910-65929 Msa1427230:five_prime_UTR 30.0%
!!! ATATCATGTAGGAGTACTTT+TGG - tig0026171:66068-66087 Msa1427230:five_prime_UTR 30.0%
!!! TATCATGTAGGAGTACTTTT+GGG - tig0026171:66069-66088 Msa1427230:five_prime_UTR 30.0%
AGAGAAAATAAACGTGACCT+GGG + tig0026171:61491-61510 None:intergenic 35.0%
!!! GGATTTGTTGTTGAGTTTTC+AGG + tig0026171:61538-61557 None:intergenic 35.0%
! GAAACCCTAAGGAAATTTTC+TGG + tig0026171:61736-61755 None:intergenic 35.0%
ATGAAGAATACGAAACCCTA+AGG + tig0026171:61747-61766 None:intergenic 35.0%
AAGATGAAGAGATTTGAACG+CGG + tig0026171:61819-61838 None:intergenic 35.0%
!! AATTATGGTGTTACCTTGTG+CGG + tig0026171:61862-61881 None:intergenic 35.0%
GGTAACACCATAATTTCTAC+TGG - tig0026171:61867-61886 Msa1427230:intron 35.0%
TGTTTGTGTAGCTCTTTCTT+TGG - tig0026171:62202-62221 Msa1427230:CDS 35.0%
CTTGAAGGATGATTACTACA+AGG - tig0026171:62320-62339 Msa1427230:intron 35.0%
! AGACATGCTTCCAGAATTTT+GGG - tig0026171:62423-62442 Msa1427230:intron 35.0%
!! TTGATGATGAGTTGTTTGTC+TGG - tig0026171:62679-62698 Msa1427230:intron 35.0%
!! ACTAATTTTGACCCGAAAAG+CGG - tig0026171:62732-62751 Msa1427230:intron 35.0%
CCAAATTCAACAATGGCAAA+GGG + tig0026171:62861-62880 None:intergenic 35.0%
TCCAAATTCAACAATGGCAA+AGG + tig0026171:62862-62881 None:intergenic 35.0%
ACAATGCTATGAAGTTAGAG+AGG - tig0026171:62901-62920 Msa1427230:intron 35.0%
AGAGGGATTACTTAGGTTTA+AGG - tig0026171:62949-62968 Msa1427230:intron 35.0%
GAGGGATTACTTAGGTTTAA+GGG - tig0026171:62950-62969 Msa1427230:intron 35.0%
! TCAAATCCACATTTTCCTTC+AGG + tig0026171:63055-63074 None:intergenic 35.0%
GTGGATTTGAAAACAGTTTC+TGG - tig0026171:63065-63084 Msa1427230:intron 35.0%
!! AGTCTTCTGCTTTAAGGTAT+TGG + tig0026171:63141-63160 None:intergenic 35.0%
TTCATCAGTCTTCTGCTTTA+AGG + tig0026171:63147-63166 None:intergenic 35.0%
AAAGCAGAAGACTGATGAAT+TGG - tig0026171:63148-63167 Msa1427230:CDS 35.0%
TTTGATCCATCACTTTCCTT+AGG + tig0026171:63211-63230 None:intergenic 35.0%
! ATGCTTGAAGCTTTTAACGA+GGG - tig0026171:63239-63258 Msa1427230:CDS 35.0%
CATTAGAAATCAGCAAGATG+CGG - tig0026171:63467-63486 Msa1427230:intron 35.0%
! GAAAAAGTGTGTTCAAGAGA+GGG + tig0026171:63722-63741 None:intergenic 35.0%
! AGAAAAAGTGTGTTCAAGAG+AGG + tig0026171:63723-63742 None:intergenic 35.0%
TGTTAGCATTCCTTACTCTA+TGG - tig0026171:63845-63864 Msa1427230:intron 35.0%
TCACAAGAAAATTCATGACC+TGG - tig0026171:64144-64163 Msa1427230:intron 35.0%
ACTTGATGCAAAACAAGCAT+TGG - tig0026171:64174-64193 Msa1427230:intron 35.0%
!! TGCAAAACAAGCATTGGAAT+TGG - tig0026171:64180-64199 Msa1427230:intron 35.0%
CATTGGAATTGGAGATAGAA+CGG - tig0026171:64191-64210 Msa1427230:intron 35.0%
TTCCAGGTAATGAATCACAT+TGG - tig0026171:64226-64245 Msa1427230:intron 35.0%
AGAAGAGAAGAAAAAACTGG+AGG - tig0026171:64261-64280 Msa1427230:CDS 35.0%
TTGGCTATCAACTCATCTAA+TGG - tig0026171:64469-64488 Msa1427230:CDS 35.0%
GTTGAAAATTTGGTAGAGTC+AGG - tig0026171:64985-65004 Msa1427230:CDS 35.0%
CGAACAAGGAAAAGAATTAC+TGG + tig0026171:65174-65193 None:intergenic 35.0%
GAGCCATAATTTCTGTGAAA+AGG - tig0026171:65225-65244 Msa1427230:CDS 35.0%
AAGTTGAGACTGATAAAGAC+GGG - tig0026171:65423-65442 Msa1427230:intron 35.0%
!! ATTCTGGAGTTATTGTACCA+TGG + tig0026171:65453-65472 None:intergenic 35.0%
! ATCACGCAGGAAATTTTAGA+CGG - tig0026171:65677-65696 Msa1427230:five_prime_UTR 35.0%
AAAGTTTGAAGGATGAGTTC+GGG - tig0026171:65717-65736 Msa1427230:five_prime_UTR 35.0%
! AGGGTGTTTCCCATTTAATT+AGG - tig0026171:65861-65880 Msa1427230:five_prime_UTR 35.0%
! ATTCTAGCTGTAACTGACTT+TGG - tig0026171:65979-65998 Msa1427230:five_prime_UTR 35.0%
! GAAGTATTAACACCAACCAT+TGG + tig0026171:66023-66042 None:intergenic 35.0%
AAAATAAACGTGACCTGGGT+GGG + tig0026171:61487-61506 None:intergenic 40.0%
CAGAGAAAATAAACGTGACC+TGG + tig0026171:61492-61511 None:intergenic 40.0%
!!! TTCTCTCGTTTTTTCTCCTC+TGG - tig0026171:61778-61797 Msa1427230:CDS 40.0%
AGATTTGAACGCGGAATCAA+CGG + tig0026171:61810-61829 None:intergenic 40.0%
!! ATTATGGTGTTACCTTGTGC+GGG + tig0026171:61861-61880 None:intergenic 40.0%
AGCTCAAAATCTCTGATTCC+AGG - tig0026171:62346-62365 Msa1427230:intron 40.0%
! GAGACATGCTTCCAGAATTT+TGG - tig0026171:62422-62441 Msa1427230:intron 40.0%
! ATTGCTAGTGATAAGGTACC+TGG - tig0026171:62555-62574 Msa1427230:intron 40.0%
TCACTAGCATTACTAACACC+AGG + tig0026171:62576-62595 None:intergenic 40.0%
TTAGCCAATATGACCATCCA+TGG + tig0026171:62705-62724 None:intergenic 40.0%
!! CAACATACTTTCCGCTTTTC+GGG + tig0026171:62746-62765 None:intergenic 40.0%
!! CCAACATACTTTCCGCTTTT+CGG + tig0026171:62747-62766 None:intergenic 40.0%
! CGAAAAGCGGAAAGTATGTT+GGG - tig0026171:62745-62764 Msa1427230:intron 40.0%
CACAGCGTTGTAACTCTAAT+CGG + tig0026171:62819-62838 None:intergenic 40.0%
CCCTTTGCCATTGTTGAATT+TGG - tig0026171:62858-62877 Msa1427230:intron 40.0%
GAATTTGGAAAAGAGTGGGA+TGG - tig0026171:62873-62892 Msa1427230:intron 40.0%
TGTGGTAAGAGGGATTACTT+AGG - tig0026171:62942-62961 Msa1427230:intron 40.0%
TTACTTAGGTTTAAGGGAGC+AGG - tig0026171:62956-62975 Msa1427230:intron 40.0%
AGATAGACTATTTGGCTGGA+TGG - tig0026171:62986-63005 Msa1427230:intron 40.0%
TATAGTTGGCAAACACCTGA+AGG - tig0026171:63037-63056 Msa1427230:intron 40.0%
CAAACACCTGAAGGAAAATG+TGG - tig0026171:63046-63065 Msa1427230:intron 40.0%
! AGTTTCTGGAAAAGAAGCTG+AGG - tig0026171:63079-63098 Msa1427230:intron 40.0%
GACAGCAAGCAAATATGATG+AGG - tig0026171:63175-63194 Msa1427230:CDS 40.0%
ATGAGGCTAATGCATTCCTA+AGG - tig0026171:63192-63211 Msa1427230:CDS 40.0%
TGCATTCCTAAGGAAAGTGA+TGG - tig0026171:63202-63221 Msa1427230:CDS 40.0%
! GATGCTTGAAGCTTTTAACG+AGG - tig0026171:63238-63257 Msa1427230:CDS 40.0%
! GATTTAGAGCCGAAACATTC+TGG - tig0026171:63316-63335 Msa1427230:CDS 40.0%
!! CGCATCTTGCTGATTTCTAA+TGG + tig0026171:63469-63488 None:intergenic 40.0%
!! GTATCAGGAGAAAGTATCGA+AGG - tig0026171:63504-63523 Msa1427230:CDS 40.0%
CGAAGGATCATGAAATAGCT+AGG - tig0026171:63521-63540 Msa1427230:intron 40.0%
AGGATCATGAAATAGCTAGG+CGG - tig0026171:63524-63543 Msa1427230:intron 40.0%
GTGTTCAAGAGAGGGTTAAA+AGG + tig0026171:63714-63733 None:intergenic 40.0%
TCCTTACTCTATGGACCATT+TGG - tig0026171:63854-63873 Msa1427230:CDS 40.0%
ACCAAATGGTCCATAGAGTA+AGG + tig0026171:63858-63877 None:intergenic 40.0%
GGCAATAGAAGAGCAACAAA+AGG - tig0026171:63974-63993 Msa1427230:CDS 40.0%
GTCTTTGGCTGAAGAACATA+AGG - tig0026171:64013-64032 Msa1427230:intron 40.0%
AAAATTCATGACCTGGAGAG+AGG - tig0026171:64151-64170 Msa1427230:intron 40.0%
CTCCAATGTGATTCATTACC+TGG + tig0026171:64231-64250 None:intergenic 40.0%
GAAAAAGAAGAGGAGTTGGA+AGG - tig0026171:64304-64323 Msa1427230:CDS 40.0%
! CACTTTTGGACACAAACAAC+TGG + tig0026171:64934-64953 None:intergenic 40.0%
! ATTCTTTTCCTTGTTCGCAG+TGG - tig0026171:65177-65196 Msa1427230:CDS 40.0%
TTCACAGAAATTATGGCTCG+AGG + tig0026171:65224-65243 None:intergenic 40.0%
AAGCACAACTTCGCGAAAAA+TGG - tig0026171:65330-65349 Msa1427230:intron 40.0%
TGATAAAGACGGGAAATCCA+TGG - tig0026171:65433-65452 Msa1427230:intron 40.0%
TACAAAGCATGGGATGCTAT+TGG - tig0026171:65544-65563 Msa1427230:intron 40.0%
TTTCCCTGATATGAACTGCA+TGG - tig0026171:65628-65647 Msa1427230:intron 40.0%
AAGTTTGAAGGATGAGTTCG+GGG - tig0026171:65718-65737 Msa1427230:five_prime_UTR 40.0%
TTAAACGAGTACAACCCTAG+TGG - tig0026171:65779-65798 Msa1427230:five_prime_UTR 40.0%
!!! TACCGGAACTCTGGAATTTT+AGG - tig0026171:65813-65832 Msa1427230:five_prime_UTR 40.0%
!!! ACCGGAACTCTGGAATTTTA+GGG - tig0026171:65814-65833 Msa1427230:five_prime_UTR 40.0%
TCCCTAAAATTCCAGAGTTC+CGG + tig0026171:65818-65837 None:intergenic 40.0%
!!! GAACTCTGGAATTTTAGGGA+AGG - tig0026171:65818-65837 Msa1427230:five_prime_UTR 40.0%
!! TCTGGAATTTTAGGGAAGGA+AGG - tig0026171:65822-65841 Msa1427230:five_prime_UTR 40.0%
TTATTGAGGCTTCATTTGGG+TGG - tig0026171:65913-65932 Msa1427230:five_prime_UTR 40.0%
CAATCCAATCACAATGCCAA+TGG - tig0026171:66004-66023 Msa1427230:five_prime_UTR 40.0%
GGTTCAAACTTAGAAACGAG+TGG - tig0026171:66090-66109 Msa1427230:five_prime_UTR 40.0%
GAAAATAAACGTGACCTGGG+TGG + tig0026171:61488-61507 None:intergenic 45.0%
TTGAGTAATCTTCCCGCACA+AGG - tig0026171:61846-61865 Msa1427230:intron 45.0%
! CTGTCCGTTTTGCTACAACA+AGG - tig0026171:62374-62393 Msa1427230:intron 45.0%
ATGAGTTGTTTGTCTGGCCA+TGG - tig0026171:62685-62704 Msa1427230:intron 45.0%
! CCGAAAAGCGGAAAGTATGT+TGG - tig0026171:62744-62763 Msa1427230:intron 45.0%
AAGGAGGAGCTGAACATGAA+AGG - tig0026171:62786-62805 Msa1427230:intron 45.0%
AGGAGGAGCTGAACATGAAA+GGG - tig0026171:62787-62806 Msa1427230:intron 45.0%
CGATTAGAGTTACAACGCTG+TGG - tig0026171:62817-62836 Msa1427230:intron 45.0%
!! CAAAGGGTGTTTGTCCTCTA+GGG + tig0026171:62845-62864 None:intergenic 45.0%
GAAGTTAGAGAGGAGCTTTC+AGG - tig0026171:62911-62930 Msa1427230:intron 45.0%
GAGCGAGGAGATAGACTATT+TGG - tig0026171:62978-62997 Msa1427230:intron 45.0%
GAGGAGATAGACTATTTGGC+TGG - tig0026171:62982-63001 Msa1427230:intron 45.0%
GAAAAGAAGCTGAGGACACA+AGG - tig0026171:63087-63106 Msa1427230:intron 45.0%
AAAGCGAAGACGCTTGTCTT+TGG - tig0026171:63110-63129 Msa1427230:CDS 45.0%
GAAGACGCTTGTCTTTGGTT+TGG - tig0026171:63115-63134 Msa1427230:CDS 45.0%
GGATCATGAAATAGCTAGGC+GGG - tig0026171:63525-63544 Msa1427230:intron 45.0%
TGAACTCAAGTCCCGTGAAA+AGG - tig0026171:63567-63586 Msa1427230:intron 45.0%
! CTTCTGCAGATCCTTTTCAC+GGG + tig0026171:63581-63600 None:intergenic 45.0%
! GCTTCTGCAGATCCTTTTCA+CGG + tig0026171:63582-63601 None:intergenic 45.0%
TTGGAGATAGAACGGCTGAA+AGG - tig0026171:64199-64218 Msa1427230:intron 45.0%
GGAAATCAAAATGGAGCTGC+AGG - tig0026171:64282-64301 Msa1427230:CDS 45.0%
GCAGGAAAAAGAAGAGGAGT+TGG - tig0026171:64300-64319 Msa1427230:CDS 45.0%
GGAAGATCTTCAACAGACAC+TGG - tig0026171:64330-64349 Msa1427230:CDS 45.0%
TCACCTTTGGACACAGACAA+CGG + tig0026171:64871-64890 None:intergenic 45.0%
TTGTCTGTGTCCAAAGGTGA+TGG - tig0026171:64871-64890 Msa1427230:CDS 45.0%
!! AGTTTGTTGCTGTTGCCTTG+CGG - tig0026171:65123-65142 Msa1427230:CDS 45.0%
ACAATGAAATCATGGCCGCA+AGG + tig0026171:65141-65160 None:intergenic 45.0%
GCGGCCATGATTTCATTGTT+TGG - tig0026171:65142-65161 Msa1427230:CDS 45.0%
TTTCCTTGTTCGCAGTGGAT+TGG - tig0026171:65182-65201 Msa1427230:CDS 45.0%
CTCTTGGCTGCTTCCAAAAA+TGG + tig0026171:65272-65291 None:intergenic 45.0%
GGCAATTGAAAGCAATCGAG+TGG - tig0026171:65351-65370 Msa1427230:intron 45.0%
AATCGAGTGGTGCTCAAAGT+GGG - tig0026171:65364-65383 Msa1427230:intron 45.0%
ACTGTCTTAAAGATCCCAGC+TGG - tig0026171:65390-65409 Msa1427230:intron 45.0%
TGCCAAATAAGTGCTAGCAG+CGG + tig0026171:65602-65621 None:intergenic 45.0%
GGTCCATGCAGTTCATATCA+GGG + tig0026171:65634-65653 None:intergenic 45.0%
AATTCCAGAGTTCCGGTACT+GGG + tig0026171:65811-65830 None:intergenic 45.0%
AAATTCCAGAGTTCCGGTAC+TGG + tig0026171:65812-65831 None:intergenic 45.0%
CCAACCATTGGCATTGTGAT+TGG + tig0026171:66011-66030 None:intergenic 45.0%
CCAATCACAATGCCAATGGT+TGG - tig0026171:66008-66027 Msa1427230:five_prime_UTR 45.0%
GGGTGGGTACTTCTTCACTA+AGG + tig0026171:61471-61490 None:intergenic 50.0%
!! TAGTGAAGAAGTACCCACCC+AGG - tig0026171:61471-61490 Msa1427230:three_prime_UTR 50.0%
GAATCAACGGCGAATACCAG+AGG + tig0026171:61797-61816 None:intergenic 50.0%
ACGCGAGTCACCCAAAATTC+TGG + tig0026171:62436-62455 None:intergenic 50.0%
GTTGTTTGTCTGGCCATGGA+TGG - tig0026171:62689-62708 Msa1427230:intron 50.0%
CTGGCCATGGATGGTCATAT+TGG - tig0026171:62698-62717 Msa1427230:intron 50.0%
!! GCAAAGGGTGTTTGTCCTCT+AGG + tig0026171:62846-62865 None:intergenic 50.0%
AGAAATCAGCAAGATGCGGC+AGG - tig0026171:63471-63490 Msa1427230:CDS 50.0%
TGAAATAGCTAGGCGGGAAC+TGG - tig0026171:63531-63550 Msa1427230:intron 50.0%
TTGCATCAAGTCCTCTCTCC+AGG + tig0026171:64165-64184 None:intergenic 50.0%
GGAGCTGCAGGAAAAAGAAG+AGG - tig0026171:64294-64313 Msa1427230:CDS 50.0%
ATCCCGTTGTCTGTGTCCAA+AGG - tig0026171:64865-64884 Msa1427230:CDS 50.0%
CACCTTTGGACACAGACAAC+GGG + tig0026171:64870-64889 None:intergenic 50.0%
CATCCAATCCACTGCGAACA+AGG + tig0026171:65188-65207 None:intergenic 50.0%
!! GTGGATTGGATGCCCAAAGA+AGG - tig0026171:65196-65215 Msa1427230:CDS 50.0%
CAATCGAGTGGTGCTCAAAG+TGG - tig0026171:65363-65382 Msa1427230:intron 50.0%
ACTTTGAACGGATGCCAGCT+GGG + tig0026171:65407-65426 None:intergenic 50.0%
AACTTTGAACGGATGCCAGC+TGG + tig0026171:65408-65427 None:intergenic 50.0%
TGCCGCTGCTAGCACTTATT+TGG - tig0026171:65597-65616 Msa1427230:intron 50.0%
CGGTCCATGCAGTTCATATC+AGG + tig0026171:65635-65654 None:intergenic 50.0%
! TGCAGTAGCTACAGCTCTGA+AGG - tig0026171:65754-65773 Msa1427230:five_prime_UTR 50.0%
ACGAGTACAACCCTAGTGGT+AGG - tig0026171:65783-65802 Msa1427230:five_prime_UTR 50.0%
GTACTGGGTACCTACCACTA+GGG + tig0026171:65796-65815 None:intergenic 50.0%
TAGTGGTAGGTACCCAGTAC+CGG - tig0026171:65796-65815 Msa1427230:five_prime_UTR 50.0%
AGGAAGGAAAGCCTCGTTGA+AGG - tig0026171:65838-65857 Msa1427230:five_prime_UTR 50.0%
AAGGAAAGCCTCGTTGAAGG+AGG - tig0026171:65841-65860 Msa1427230:five_prime_UTR 50.0%
AGGAAAGCCTCGTTGAAGGA+GGG - tig0026171:65842-65861 Msa1427230:five_prime_UTR 50.0%
GCAAAACGGACAGCGATACC+TGG + tig0026171:62367-62386 None:intergenic 55.0%
TTTGGGTGACTCGCGTGAGA+CGG - tig0026171:62440-62459 Msa1427230:intron 55.0%
ACAACGCTGTGGAACCCTAG+AGG - tig0026171:62828-62847 Msa1427230:intron 55.0%
!! AGCTTTCAGGCAGAGCACTG+TGG - tig0026171:62924-62943 Msa1427230:intron 55.0%
!! AGGCAGAGCACTGTGGTAAG+AGG - tig0026171:62931-62950 Msa1427230:intron 55.0%
!! GGCAGAGCACTGTGGTAAGA+GGG - tig0026171:62932-62951 Msa1427230:intron 55.0%
! GCAGGTTGAACGCGAGTATC+AGG - tig0026171:63489-63508 Msa1427230:CDS 55.0%
ACGGCTGAAAGGAGCTTTCC+AGG - tig0026171:64210-64229 Msa1427230:intron 55.0%
AGAAGAGGAGTTGGAAGGCG+TGG - tig0026171:64309-64328 Msa1427230:CDS 55.0%
TGGCTCGAGGAGCCTTCTTT+GGG + tig0026171:65211-65230 None:intergenic 55.0%
ATGGCTCGAGGAGCCTTCTT+TGG + tig0026171:65212-65231 None:intergenic 55.0%
TGCTAGCAGCGGCAAGTTTC+AGG + tig0026171:65591-65610 None:intergenic 55.0%
GAAGGATGAGTTCGGGGATG+AGG - tig0026171:65724-65743 Msa1427230:five_prime_UTR 55.0%
! GGTACTGGGTACCTACCACT+AGG + tig0026171:65797-65816 None:intergenic 55.0%
GGAAACACCCTCCTTCAACG+AGG + tig0026171:65852-65871 None:intergenic 55.0%
GGTTTAAGGGAGCAGGAGCG+AGG - tig0026171:62963-62982 Msa1427230:intron 60.0%
CTAGGCGGGAACTGGAAGCT+CGG - tig0026171:63539-63558 Msa1427230:intron 60.0%
! GGTACCCAGTACCGGAACTC+TGG - tig0026171:65804-65823 Msa1427230:five_prime_UTR 60.0%
GGCGGGAACTGGAAGCTCGG+AGG - tig0026171:63542-63561 Msa1427230:intron 70.0%
Chromosome Type Strat End Strand Name
tig0026171 gene 61339 66163 61339 ID=Msa1427230;Name=Msa1427230
tig0026171 mRNA 61339 66163 61339 ID=Msa1427230-mRNA-1;Parent=Msa1427230;Name=Msa1427230-mRNA-1;_AED=0.25;_eAED=0.25;_QI=529|1|1|1|0.83|0.85|7|244|678
tig0026171 exon 61339 61816 61339 ID=Msa1427230-mRNA-1:exon:5332;Parent=Msa1427230-mRNA-1
tig0026171 exon 62048 62305 62048 ID=Msa1427230-mRNA-1:exon:5331;Parent=Msa1427230-mRNA-1
tig0026171 exon 63091 63375 63091 ID=Msa1427230-mRNA-1:exon:5330;Parent=Msa1427230-mRNA-1
tig0026171 exon 63468 63536 63468 ID=Msa1427230-mRNA-1:exon:5329;Parent=Msa1427230-mRNA-1
tig0026171 exon 63848 64029 63848 ID=Msa1427230-mRNA-1:exon:5328;Parent=Msa1427230-mRNA-1
tig0026171 exon 64242 65250 64242 ID=Msa1427230-mRNA-1:exon:5327;Parent=Msa1427230-mRNA-1
tig0026171 exon 65635 66163 65635 ID=Msa1427230-mRNA-1:exon:5326;Parent=Msa1427230-mRNA-1
tig0026171 five_prime_UTR 65635 66163 65635 ID=Msa1427230-mRNA-1:five_prime_utr;Parent=Msa1427230-mRNA-1
tig0026171 CDS 64242 65250 64242 ID=Msa1427230-mRNA-1:cds;Parent=Msa1427230-mRNA-1
tig0026171 CDS 63848 64029 63848 ID=Msa1427230-mRNA-1:cds;Parent=Msa1427230-mRNA-1
tig0026171 CDS 63468 63536 63468 ID=Msa1427230-mRNA-1:cds;Parent=Msa1427230-mRNA-1
tig0026171 CDS 63091 63375 63091 ID=Msa1427230-mRNA-1:cds;Parent=Msa1427230-mRNA-1
tig0026171 CDS 62048 62305 62048 ID=Msa1427230-mRNA-1:cds;Parent=Msa1427230-mRNA-1
tig0026171 CDS 61583 61816 61583 ID=Msa1427230-mRNA-1:cds;Parent=Msa1427230-mRNA-1
tig0026171 three_prime_UTR 61339 61582 61339 ID=Msa1427230-mRNA-1:three_prime_utr;Parent=Msa1427230-mRNA-1
Gene Sequence

>Msa1427230

ATGTCCAAAAGATCAAAACATACTCATGATTCGGATTATGAATACTACGAGAGTAGATATTACGAAGACTTGAAGGATGATTACTACAAGGACAAGCTCAAAATCTCTGATTCCAGGTATCGCTGTCCGTTTTGCTACAACAAGGATTACTACTCTTTGAGCGAGTTATTGAGACATGCTTCCAGAATTTTGGGTGACTCGCGTGAGACGGATAAAGAAATTGCTAAACACTCTGCTTTGAAAATGTATATTGAAAGGTATCTAGATGTTAAAGTTGATAGAATTAGGTTATCTGGTGATAGAATTGCTAGTGATAAGGTACCTGGTGTTAGTAATGCTAGTGATAAGACTGTTAATTTGAGTATCGCTAATGAGAAGTCACGTATTATGAATGTCGATAAGGGTCAGTTAGCTAACAAGAACGTCGTTGATGATGAGTTGTTTGTCTGGCCATGGATGGTCATATTGGCTAACAATGTTACTAATTTTGACCCGAAAAGCGGAAAGTATGTTGGGAAGAATCATAAGAAAATTAAGGAGGAGCTGAACATGAAAGGGTTTCAGCCGATTAGAGTTACAACGCTGTGGAACCCTAGAGGACAAACACCCTTTGCCATTGTTGAATTTGGAAAAGAGTGGGATGGTTTTGACAATGCTATGAAGTTAGAGAGGAGCTTTCAGGCAGAGCACTGTGGTAAGAGGGATTACTTAGGTTTAAGGGAGCAGGAGCGAGGAGATAGACTATTTGGCTGGATGGCACGTCATGATGACTATAATTTAAAGGATATAGTTGGCAAACACCTGAAGGAAAATGTGGATTTGAAAACAGTTTCTGGAAAAGAAGCTGAGGACACAAGGAAAGCGAAGACGCTTGTCTTTGGTTTGGCCAATACCTTAAAGCAGAAGACTGATGAATTGGAACAGACAGCAAGCAAATATGATGAGGCTAATGCATTCCTAAGGAAAGTGATGGATCAAAAAGAGAAGATGCTTGAAGCTTTTAACGAGGAAATCAGCAAGATGCGGCAGGTTGAACGCGAGTATCAGGAGAAAGTATCGAAGGATCATGAAATAGCTAGGCGGGAACTGGAAGCTCGGAGGAATGAACTCAAGTCCCGTGAAAAGGATCTGCAGAAGCGTCAAGCAGATAATCTCAATGAGAGAAACAAGCTATATCTTGAGAAGAAAAATAATGAGATGGCAATAGAAGAGCAACAAAAGGCTGATGAAAAAATGATGTCTTTGGCTGAAGAACATAAGAAAGAAAAGGAGAAACTTCACAAGAAAATTCATGACCTGGAGAGAGGACTTGATGCAAAACAAGCATTGGAATTGGAGATAGAACGGCTGAAAGGAGCTTTCCAGGTAATGAATCACATTGGAGAGACTGATCTAGAAGAGAAGAAAAAACTGGAGGAAATCAAAATGGAGCTGCAGGAAAAAGAAGAGGAGTTGGAAGGCGTGGAAGATCTTCAACAGACACTGGTTGTTCAAGAGCGAAAAACTAATGACGAGTTGCAAGATGCCCGCAAAAAATTGATAAGTTGGATTGGATGCCCAAAGAAGGCTCCTCGAGCCATAATTTCTGTGAAAAGGATGGGTGAACTTGAGATTAAGCCATTTTTGGAAGCAGCCAAGAGAAAGTTTTCTGATGAAGTGAATGAGAAAAAAGCAACTAAAGCACAACTTCGCGAAAAATGGCAATTGAAAGCAATCGAGTGGTGCTCAAAGTGGGATGACTGTCTTAAAGATCCCAGCTGGCATCCGTTCAAAGTTGAGACTGATAAAGACGGGAAATCCATGGAAATTTTAGACGGAGAAGATGAAAAGCTAAAAAGTTTGAAGGATGAGTTCGGGGATGAGGTGCATGATGCAGTAGCTACAGCTCTGAAGGAGTTAAACGAGTACAACCCTAGTGGTAGGTACCCAGTACCGGAACTCTGGAATTTTAGGGAAGGAAGGAAAGCCTCGTTGAAGGAGGGTGTTTCCCATTTAATTAGGCAATGGAAATCAAATAAGGGAAAGAAAACTTATTGA

Protein sequence

>Msa1427230

MSKRSKHTHDSDYEYYESRYYEDLKDDYYKDKLKISDSRYRCPFCYNKDYYSLSELLRHASRILGDSRETDKEIAKHSALKMYIERYLDVKVDRIRLSGDRIASDKVPGVSNASDKTVNLSIANEKSRIMNVDKGQLANKNVVDDELFVWPWMVILANNVTNFDPKSGKYVGKNHKKIKEELNMKGFQPIRVTTLWNPRGQTPFAIVEFGKEWDGFDNAMKLERSFQAEHCGKRDYLGLREQERGDRLFGWMARHDDYNLKDIVGKHLKENVDLKTVSGKEAEDTRKAKTLVFGLANTLKQKTDELEQTASKYDEANAFLRKVMDQKEKMLEAFNEEISKMRQVEREYQEKVSKDHEIARRELEARRNELKSREKDLQKRQADNLNERNKLYLEKKNNEMAIEEQQKADEKMMSLAEEHKKEKEKLHKKIHDLERGLDAKQALELEIERLKGAFQVMNHIGETDLEEKKKLEEIKMELQEKEEELEGVEDLQQTLVVQERKTNDELQDARKKLISWIGCPKKAPRAIISVKRMGELEIKPFLEAAKRKFSDEVNEKKATKAQLREKWQLKAIEWCSKWDDCLKDPSWHPFKVETDKDGKSMEILDGEDEKLKSLKDEFGDEVHDAVATALKELNEYNPSGRYPVPELWNFREGRKASLKEGVSHLIRQWKSNKGKKTY*