AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1460830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460830 MtrunA17_Chr2g0328241 94.838 678 35 0 1 678 1 678 0.0 1208
Msa1460830 MtrunA17_Chr2g0328251 78.242 694 135 1 1 678 1 694 0.0 1048
Msa1460830 MtrunA17_Chr4g0024031 75.354 706 110 4 1 678 1 670 0.0 969
Msa1460830 MtrunA17_Chr2g0327251 73.884 605 114 3 74 678 8 568 0.0 835
Msa1460830 MtrunA17_Chr2g0328231 73.590 390 62 4 305 678 2 366 0.0 529
Msa1460830 MtrunA17_Chr3g0111661 39.793 676 343 13 10 673 13 636 4.54e-151 452
Msa1460830 MtrunA17_Chr5g0435301 38.405 677 357 17 16 676 487 1119 1.34e-134 423
Msa1460830 MtrunA17_Chr4g0071151 76.046 263 47 3 420 678 3 253 2.07e-132 390
Msa1460830 MtrunA17_Chr4g0074301 36.553 673 352 16 16 676 19 628 3.16e-113 354
Msa1460830 MtrunA17_Chr4g0001231 35.479 668 352 18 21 676 24 624 9.07e-112 350
Msa1460830 MtrunA17_Chr4g0070931 35.830 681 346 17 16 676 19 628 3.28e-111 348
Msa1460830 MtrunA17_Chr4g0071141 79.130 115 24 0 306 420 3 117 5.57e-50 170
Msa1460830 MtrunA17_Chr3g0111741 42.857 231 115 5 447 676 123 337 7.98e-45 164
Msa1460830 MtrunA17_Chr3g0111731 36.134 238 125 7 440 676 2 213 4.83e-28 113
Msa1460830 MtrunA17_Chr1g0176351 59.140 93 35 2 1 93 1 90 1.81e-27 110
Msa1460830 MtrunA17_Chr8g0389491 62.791 86 29 2 3 88 65 147 3.18e-25 103
Msa1460830 MtrunA17_Chr4g0074271 25.761 427 235 12 16 428 36 394 7.76e-23 102
Msa1460830 MtrunA17_Chr4g0074271 62.500 64 24 0 603 666 384 447 1.14e-18 89.4
Msa1460830 MtrunA17_Chr3g0111691 50.000 76 37 1 601 676 15 89 4.12e-17 77.4
Msa1460830 MtrunA17_Chr8g0356091 57.500 80 34 0 65 144 3 82 1.29e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460830 AT1G13790.2 48.393 529 251 6 145 669 216 726 1.62e-145 441
Msa1460830 AT1G13790.2 49.333 75 33 3 17 88 11 83 4.65e-11 66.6
Msa1460830 AT1G13790.1 48.393 529 251 6 145 669 216 726 1.62e-145 441
Msa1460830 AT1G13790.1 49.333 75 33 3 17 88 11 83 4.65e-11 66.6
Msa1460830 AT3G48670.2 35.407 675 368 14 16 676 24 644 2.03e-115 360
Msa1460830 AT3G48670.1 35.407 675 368 14 16 676 24 644 2.03e-115 360
Msa1460830 AT3G48670.3 35.407 675 368 14 16 676 24 644 2.03e-115 360
Msa1460830 AT3G12550.5 35.103 678 376 14 16 677 8 637 3.52e-113 354
Msa1460830 AT3G12550.4 35.052 679 376 15 16 677 8 638 2.48e-112 352
Msa1460830 AT3G12550.2 35.052 679 376 15 16 677 8 638 2.48e-112 352
Msa1460830 AT3G12550.1 35.052 679 376 15 16 677 8 638 2.48e-112 352
Msa1460830 AT1G15910.1 34.661 678 366 14 16 677 18 634 5.67e-110 346
Msa1460830 AT5G59390.2 38.783 526 296 9 148 667 34 539 1.66e-107 337
Msa1460830 AT5G59390.4 38.783 526 296 9 148 667 34 539 1.66e-107 337
Msa1460830 AT5G59390.3 38.783 526 296 9 148 667 34 539 1.66e-107 337
Msa1460830 AT4G00380.1 34.570 674 374 14 15 677 18 635 5.22e-106 335
Msa1460830 AT4G00380.3 34.570 674 374 14 15 677 18 635 5.22e-106 335
Msa1460830 AT5G59390.1 38.418 531 296 10 148 667 34 544 3.04e-105 331
Msa1460830 AT5G59390.5 38.418 531 296 10 148 667 34 544 3.04e-105 331
Msa1460830 AT4G00380.2 37.477 539 308 8 147 677 90 607 8.79e-104 329
Msa1460830 AT1G80790.1 35.484 682 355 16 15 677 19 634 1.42e-102 327
Msa1460830 AT1G80790.2 35.484 682 355 16 15 677 19 634 1.42e-102 327
Msa1460830 AT4G01180.1 37.823 542 281 11 148 667 32 539 5.63e-100 317
Msa1460830 AT3G12550.3 32.601 592 335 14 16 591 8 551 1.61e-79 264
Msa1460830 AT4G01780.1 31.828 465 208 10 215 676 111 469 3.39e-59 207
Msa1460830 AT1G80790.3 31.130 469 252 13 15 464 19 435 1.32e-55 197
Msa1460830 AT3G29375.3 43.810 210 96 4 468 676 38 226 9.21e-42 152
Msa1460830 AT3G29375.1 43.868 212 97 4 466 676 159 349 7.11e-40 150
Msa1460830 AT3G29375.2 39.231 130 59 3 466 594 36 146 1.31e-14 72.8
Msa1460830 AT2G16490.1 41.667 72 42 0 602 673 74 145 3.04e-13 68.9

Find 164 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGCCATTGTTGAATT+TGG 0.062386 tig0041098:+1806 Msa1460830:CDS
TTCATCAGTCTTCTGCTTTA+AGG 0.090360 tig0041098:-2092 None:intergenic
AGAGGGATTACTTAGGTTTA+AGG 0.106130 tig0041098:+1897 Msa1460830:CDS
GAGACATGCTTCCAGAATTT+TGG 0.107290 tig0041098:+1370 Msa1460830:CDS
ATTTCCATTGCCTAATTAAA+TGG 0.115767 tig0041098:-4809 None:intergenic
GTGGATTTGAAAACAGTTTC+TGG 0.144084 tig0041098:+2013 Msa1460830:CDS
GAAGTTAGAGAGGAGCTTTC+AGG 0.211680 tig0041098:+1859 Msa1460830:CDS
ATGTTAAAGTTGATAGAATT+AGG 0.264382 tig0041098:+1465 Msa1460830:CDS
TAGGCAATGGAAATCAAATA+AGG 0.267301 tig0041098:+4818 Msa1460830:CDS
TCATGATGACTATAATTTAA+AGG 0.274839 tig0041098:+1961 Msa1460830:CDS
ATGGCTCGAGGAGCCTTCTT+TGG 0.276297 tig0041098:-4158 None:intergenic
ATATCATGTAGGAGTACTTT+TGG 0.281384 tig0041098:+5006 Msa1460830:three_prime_UTR
AAACTTATTGAGGCTTCATT+TGG 0.288030 tig0041098:+4847 Msa1460830:exon
CCAACCATTGGCATTGTGAT+TGG 0.291418 tig0041098:-4946 None:intergenic
GTTGATAGAATTAGGTTATC+TGG 0.300562 tig0041098:+1473 Msa1460830:CDS
GAGCGAGGAGATAGACTATT+TGG 0.320283 tig0041098:+1926 Msa1460830:CDS
GCAGGTTGAACGCGAGTATC+AGG 0.324478 tig0041098:+2438 Msa1460830:CDS
AGTCTTCTGCTTTAAGGTAT+TGG 0.341440 tig0041098:-2086 None:intergenic
ACGGCTGAAAGGAGCTTTCC+AGG 0.341751 tig0041098:+3159 Msa1460830:CDS
GGAAATTTGAAATTGTCTAT+TGG 0.348064 tig0041098:+5049 Msa1460830:three_prime_UTR
AAAGTTTGAAGGATGAGTTC+GGG 0.354846 tig0041098:+4655 Msa1460830:CDS
GAAGAATCATAAGAAAATTA+AGG 0.355037 tig0041098:+1715 Msa1460830:CDS
AAAACTGGAGGAAATCAAAA+TGG 0.356376 tig0041098:+3222 Msa1460830:CDS
AAAGCAGAAGACTGATGAAT+TGG 0.362538 tig0041098:+2096 Msa1460830:CDS
AGGGTGTTTCCCATTTAATT+AGG 0.364498 tig0041098:+4799 Msa1460830:CDS
GAGGGATTACTTAGGTTTAA+GGG 0.365824 tig0041098:+1898 Msa1460830:CDS
TCCCTAAAATTCCAGAGTTC+CGG 0.369716 tig0041098:-4753 None:intergenic
AAAGCGAAGACGCTTGTCTT+TGG 0.372401 tig0041098:+2058 Msa1460830:CDS
AGCTCAAAATCTCTGATTCC+AGG 0.381907 tig0041098:+1294 Msa1460830:CDS
CACAGCGTTGTAACTCTAAT+CGG 0.385225 tig0041098:-1764 None:intergenic
TGAAATAGCTAGGCGGGAAC+TGG 0.386220 tig0041098:+2480 Msa1460830:CDS
CATTTCCAGAAAATTTCCTT+AGG 0.386875 tig0041098:+675 Msa1460830:five_prime_UTR
TGCAAAACAAGCATTGGAAT+TGG 0.388740 tig0041098:+3129 Msa1460830:CDS
ACGCGAGTCACCCAAAATTC+TGG 0.391249 tig0041098:-1381 None:intergenic
TGGCTCGAGGAGCCTTCTTT+GGG 0.396617 tig0041098:-4157 None:intergenic
TTTCCTTGTTCGCAGTGGAT+TGG 0.397924 tig0041098:+4131 Msa1460830:intron
AACTTTGAACGGATGCCAGC+TGG 0.400936 tig0041098:-4354 None:intergenic
GCAAAGGGTGTTTGTCCTCT+AGG 0.401490 tig0041098:-1791 None:intergenic
CTCCAATGTGATTCATTACC+TGG 0.402190 tig0041098:-3177 None:intergenic
TTTGATCCATCACTTTCCTT+AGG 0.403042 tig0041098:-2156 None:intergenic
TTCATCAGAAAACTTTCTCT+TGG 0.404556 tig0041098:-4234 None:intergenic
ATTCTAGCTGTAACTGACTT+TGG 0.405113 tig0041098:+4917 Msa1460830:three_prime_UTR
TTTCCATTGCCTAATTAAAT+GGG 0.407148 tig0041098:-4808 None:intergenic
CAAAGGGTGTTTGTCCTCTA+GGG 0.435599 tig0041098:-1790 None:intergenic
GAAGACGCTTGTCTTTGGTT+TGG 0.437340 tig0041098:+2063 Msa1460830:CDS
ATCAAAACATACTCATGATT+CGG 0.438153 tig0041098:+1211 Msa1460830:CDS
AGGAGGAGCTGAACATGAAA+GGG 0.453703 tig0041098:+1735 Msa1460830:CDS
AAAAGTTTGAAGGATGAGTT+CGG 0.454559 tig0041098:+4654 Msa1460830:CDS
TTGCATCAAGTCCTCTCTCC+AGG 0.454987 tig0041098:-3111 None:intergenic
TCCAAATTCAACAATGGCAA+AGG 0.455840 tig0041098:-1807 None:intergenic
GGAAATCAAAATGGAGCTGC+AGG 0.455953 tig0041098:+3231 Msa1460830:CDS
TATAATTTAAAGGATATAGT+TGG 0.456368 tig0041098:+1971 Msa1460830:CDS
TTACTTAGGTTTAAGGGAGC+AGG 0.460984 tig0041098:+1904 Msa1460830:CDS
AAATTCCAGAGTTCCGGTAC+TGG 0.463412 tig0041098:-4747 None:intergenic
AACTTATTGAGGCTTCATTT+GGG 0.464471 tig0041098:+4848 Msa1460830:exon
ACGTATTATGAATGTCGATA+AGG 0.465602 tig0041098:+1580 Msa1460830:CDS
GTCTTTGGCTGAAGAACATA+AGG 0.465805 tig0041098:+2962 Msa1460830:CDS
CCAAATTCAACAATGGCAAA+GGG 0.469750 tig0041098:-1806 None:intergenic
TAGATATTACGAAGACTTGA+AGG 0.470004 tig0041098:+1253 Msa1460830:CDS
AGAAGAGGAGTTGGAAGGCG+TGG 0.472369 tig0041098:+3258 Msa1460830:CDS
GACACTAGAAAATGATGAAA+CGG 0.472967 tig0041098:-586 None:intergenic
CTGGCCATGGATGGTCATAT+TGG 0.473776 tig0041098:+1646 Msa1460830:CDS
AGGCAGAGCACTGTGGTAAG+AGG 0.475875 tig0041098:+1879 Msa1460830:CDS
GAGCCATAATTTCTGTGAAA+AGG 0.480154 tig0041098:+4174 Msa1460830:CDS
CATAATTTCTGTGAAAAGGA+TGG 0.481577 tig0041098:+4178 Msa1460830:CDS
ATGAGTTGTTTGTCTGGCCA+TGG 0.481884 tig0041098:+1633 Msa1460830:CDS
AGGCAATGGAAATCAAATAA+GGG 0.482017 tig0041098:+4819 Msa1460830:CDS
AGATTTGAACGCGGAATCAA+CGG 0.490502 tig0041098:-754 None:intergenic
TTGATGATGAGTTGTTTGTC+TGG 0.490771 tig0041098:+1627 Msa1460830:CDS
CGTATTATGAATGTCGATAA+GGG 0.494169 tig0041098:+1581 Msa1460830:CDS
TTGAATGTTGCAGAAAGAAA+AGG 0.497168 tig0041098:+3063 Msa1460830:intron
GAAGGATGAGTTCGGGGATG+AGG 0.499124 tig0041098:+4662 Msa1460830:CDS
AATTATGGTGTTACCTTGTG+CGG 0.501085 tig0041098:-806 None:intergenic
TGAACTCAAGTCCCGTGAAA+AGG 0.503695 tig0041098:+2516 Msa1460830:CDS
CGAAAAGCGGAAAGTATGTT+GGG 0.505354 tig0041098:+1693 Msa1460830:CDS
GCAAAACGGACAGCGATACC+TGG 0.507749 tig0041098:-1312 None:intergenic
ATTTCCAGAAAATTTCCTTA+GGG 0.509069 tig0041098:+676 Msa1460830:five_prime_UTR
CTTTGAAAATGTATATTGAA+AGG 0.510087 tig0041098:+1435 Msa1460830:CDS
TTTCCCATTTAATTAGGCAA+TGG 0.511049 tig0041098:+4805 Msa1460830:CDS
CCGAAAAGCGGAAAGTATGT+TGG 0.511071 tig0041098:+1692 Msa1460830:CDS
GGTACCCAGTACCGGAACTC+TGG 0.513974 tig0041098:+4742 Msa1460830:CDS
AAGGGAAAGAAAACTTATTG+AGG 0.514142 tig0041098:+4837 Msa1460830:CDS
GGATCATGAAATAGCTAGGC+GGG 0.517645 tig0041098:+2474 Msa1460830:CDS
TTATCAGTCTCAACTTTGAA+CGG 0.522646 tig0041098:-4365 None:intergenic
AAGGAGGAGCTGAACATGAA+AGG 0.522988 tig0041098:+1734 Msa1460830:CDS
ACTTGATGCAAAACAAGCAT+TGG 0.525557 tig0041098:+3123 Msa1460830:CDS
GGCAATAGAAGAGCAACAAA+AGG 0.535693 tig0041098:+2923 Msa1460830:CDS
TAATCCTTGTTGTAGCAAAA+CGG 0.536850 tig0041098:-1326 None:intergenic
CGAAGGATCATGAAATAGCT+AGG 0.538005 tig0041098:+2470 Msa1460830:CDS
TTTGGGTGACTCGCGTGAGA+CGG 0.539435 tig0041098:+1388 Msa1460830:CDS
ACTTTGAACGGATGCCAGCT+GGG 0.546027 tig0041098:-4353 None:intergenic
TGCATTCCTAAGGAAAGTGA+TGG 0.547893 tig0041098:+2150 Msa1460830:CDS
TGATAGAATTGCTAGTGATA+AGG 0.548910 tig0041098:+1496 Msa1460830:CDS
TGTGGTAAGAGGGATTACTT+AGG 0.550144 tig0041098:+1890 Msa1460830:CDS
AGAAATCAGCAAGATGCGGC+AGG 0.552419 tig0041098:+2420 Msa1460830:intron
AGGAAGGAAAGCCTCGTTGA+AGG 0.554478 tig0041098:+4776 Msa1460830:CDS
GGCAGAGCACTGTGGTAAGA+GGG 0.555245 tig0041098:+1880 Msa1460830:CDS
TAGTGGTAGGTACCCAGTAC+CGG 0.555492 tig0041098:+4734 Msa1460830:CDS
TTCACAGAAATTATGGCTCG+AGG 0.555555 tig0041098:-4170 None:intergenic
GTGGATTGGATGCCCAAAGA+AGG 0.556146 tig0041098:+4145 Msa1460830:intron
AATAATTACTAATATCATGT+AGG 0.556605 tig0041098:+4995 Msa1460830:three_prime_UTR
TGCAGTAGCTACAGCTCTGA+AGG 0.557138 tig0041098:+4692 Msa1460830:CDS
GGTACTGGGTACCTACCACT+AGG 0.560561 tig0041098:-4732 None:intergenic
AGATAGACTATTTGGCTGGA+TGG 0.561061 tig0041098:+1934 Msa1460830:CDS
GGTTCAAACTTAGAAACGAG+TGG 0.562727 tig0041098:+5028 Msa1460830:three_prime_UTR
ATTATGGTGTTACCTTGTGC+GGG 0.563111 tig0041098:-805 None:intergenic
GAAGTATTAACACCAACCAT+TGG 0.572339 tig0041098:-4958 None:intergenic
ATGAAGAATACGAAACCCTA+AGG 0.572830 tig0041098:-691 None:intergenic
GAAAAGAAGCTGAGGACACA+AGG 0.574290 tig0041098:+2035 Msa1460830:CDS
ATAGAATTAGACTTAAATGC+AGG 0.574755 tig0041098:+4881 Msa1460830:three_prime_UTR
ATGAGGCTAATGCATTCCTA+AGG 0.574769 tig0041098:+2140 Msa1460830:CDS
GTTGTTTGTCTGGCCATGGA+TGG 0.574875 tig0041098:+1637 Msa1460830:CDS
ATAATTTCTGTGAAAAGGAT+GGG 0.575703 tig0041098:+4179 Msa1460830:CDS
AATTCCAGAGTTCCGGTACT+GGG 0.576644 tig0041098:-4746 None:intergenic
CAAACACCTGAAGGAAAATG+TGG 0.582813 tig0041098:+1994 Msa1460830:CDS
CAATCGAGTGGTGCTCAAAG+TGG 0.583300 tig0041098:+4312 Msa1460830:CDS
CTAGGCGGGAACTGGAAGCT+CGG 0.585718 tig0041098:+2488 Msa1460830:CDS
TATAGTTGGCAAACACCTGA+AGG 0.588147 tig0041098:+1985 Msa1460830:CDS
AAGTTGAGACTGATAAAGAC+GGG 0.588269 tig0041098:+4372 Msa1460830:CDS
AATCGAGTGGTGCTCAAAGT+GGG 0.588592 tig0041098:+4313 Msa1460830:CDS
TTGAGTAATCTTCCCGCACA+AGG 0.590110 tig0041098:+793 Msa1460830:five_prime_UTR
AAAATTCATGACCTGGAGAG+AGG 0.591924 tig0041098:+3100 Msa1460830:CDS
CCAATCACAATGCCAATGGT+TGG 0.592253 tig0041098:+4946 Msa1460830:three_prime_UTR
TTAGCCAATATGACCATCCA+TGG 0.593136 tig0041098:-1650 None:intergenic
GAGGAGATAGACTATTTGGC+TGG 0.593752 tig0041098:+1930 Msa1460830:CDS
TTATTGAGGCTTCATTTGGG+TGG 0.594676 tig0041098:+4851 Msa1460830:exon
CATTGGAATTGGAGATAGAA+CGG 0.595258 tig0041098:+3140 Msa1460830:CDS
CTTGAAGGATGATTACTACA+AGG 0.601753 tig0041098:+1268 Msa1460830:CDS
TTCCAGGTAATGAATCACAT+TGG 0.602846 tig0041098:+3175 Msa1460830:CDS
TTGGAGATAGAACGGCTGAA+AGG 0.603749 tig0041098:+3148 Msa1460830:CDS
TGTTGAATTTGGAAAAGAGT+GGG 0.604730 tig0041098:+1817 Msa1460830:CDS
ACTGTCTTAAAGATCCCAGC+TGG 0.606195 tig0041098:+4339 Msa1460830:CDS
GGTTTAAGGGAGCAGGAGCG+AGG 0.606961 tig0041098:+1911 Msa1460830:CDS
AAAGTTGAGACTGATAAAGA+CGG 0.607016 tig0041098:+4371 Msa1460830:CDS
ATTGCTAGTGATAAGGTACC+TGG 0.607340 tig0041098:+1503 Msa1460830:CDS
TCACAAGAAAATTCATGACC+TGG 0.607531 tig0041098:+3093 Msa1460830:CDS
AAGGAAAGCCTCGTTGAAGG+AGG 0.608173 tig0041098:+4779 Msa1460830:CDS
TGATAAAGACGGGAAATCCA+TGG 0.608822 tig0041098:+4382 Msa1460830:CDS
CAATCCAATCACAATGCCAA+TGG 0.614220 tig0041098:+4942 Msa1460830:three_prime_UTR
TTGTTGAATTTGGAAAAGAG+TGG 0.617280 tig0041098:+1816 Msa1460830:CDS
AGGAAAGCCTCGTTGAAGGA+GGG 0.621359 tig0041098:+4780 Msa1460830:CDS
GGAAGATCTTCAACAGACAC+TGG 0.622918 tig0041098:+3279 Msa1460830:CDS
ACAATGCTATGAAGTTAGAG+AGG 0.632206 tig0041098:+1849 Msa1460830:CDS
GGCAATTGAAAGCAATCGAG+TGG 0.635070 tig0041098:+4300 Msa1460830:CDS
TTGTTGTTTACAGAATGAGA+TGG 0.635228 tig0041098:+2902 Msa1460830:intron
GTACTGGGTACCTACCACTA+GGG 0.635409 tig0041098:-4731 None:intergenic
GTATCAGGAGAAAGTATCGA+AGG 0.637654 tig0041098:+2453 Msa1460830:CDS
GAATTTGGAAAAGAGTGGGA+TGG 0.639455 tig0041098:+1821 Msa1460830:CDS
TCACTAGCATTACTAACACC+AGG 0.643930 tig0041098:-1521 None:intergenic
ACGAGTACAACCCTAGTGGT+AGG 0.644559 tig0041098:+4721 Msa1460830:CDS
AAGTTTGAAGGATGAGTTCG+GGG 0.648246 tig0041098:+4656 Msa1460830:CDS
GACAGCAAGCAAATATGATG+AGG 0.653895 tig0041098:+2123 Msa1460830:CDS
AGTTTCTGGAAAAGAAGCTG+AGG 0.656933 tig0041098:+2027 Msa1460830:CDS
GAATCAACGGCGAATACCAG+AGG 0.663429 tig0041098:-741 None:intergenic
GAATCATAAGAAAATTAAGG+AGG 0.665895 tig0041098:+1718 Msa1460830:CDS
CATTAGAAATCAGCAAGATG+CGG 0.680318 tig0041098:+2416 Msa1460830:intron
GGCGGGAACTGGAAGCTCGG+AGG 0.688311 tig0041098:+2491 Msa1460830:CDS
CGATTAGAGTTACAACGCTG+TGG 0.699428 tig0041098:+1765 Msa1460830:CDS
ACAACGCTGTGGAACCCTAG+AGG 0.703885 tig0041098:+1776 Msa1460830:CDS
AGGATCATGAAATAGCTAGG+CGG 0.734039 tig0041098:+2473 Msa1460830:CDS
GGAAACACCCTCCTTCAACG+AGG 0.744953 tig0041098:-4787 None:intergenic
TTAAACGAGTACAACCCTAG+TGG 0.763773 tig0041098:+4717 Msa1460830:CDS
AGCTTTCAGGCAGAGCACTG+TGG 0.768741 tig0041098:+1872 Msa1460830:CDS
AAGATGAAGAGATTTGAACG+CGG 0.778312 tig0041098:-763 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTTTGATATTTCA+TGG + tig0041098:2368-2387 Msa1460830:intron 10.0%
!! TAAGTTATTAAAAAATAAGA+TGG - tig0041098:2857-2876 None:intergenic 10.0%
!!! TATTTTTTAATAACTTATGA+CGG + tig0041098:2860-2879 Msa1460830:intron 10.0%
!! TATAATTTAAAGGATATAGT+TGG + tig0041098:1971-1990 Msa1460830:CDS 15.0%
!! TATTAATATATCTATCTTCT+CGG + tig0041098:2291-2310 Msa1460830:intron 15.0%
!!! TAAATTTGCTTCTTTAAAAA+TGG + tig0041098:2753-2772 Msa1460830:intron 15.0%
!! TATTAAAAAATAAGATGGAT+TGG - tig0041098:2852-2871 None:intergenic 15.0%
!!! ATGTTAATATTAATGTCTTT+TGG + tig0041098:3399-3418 Msa1460830:intron 15.0%
!! AACTTTAACAATATTAATTC+TGG - tig0041098:4418-4437 None:intergenic 15.0%
!! AATAATTACTAATATCATGT+AGG + tig0041098:4995-5014 Msa1460830:three_prime_UTR 15.0%
!! ATGAATTAGAAAAAGAGAAA+GGG - tig0041098:553-572 None:intergenic 20.0%
!!! AAAAGAAAATTTTCTGGTTT+TGG - tig0041098:629-648 None:intergenic 20.0%
!! AATAGAAGTTATGGTAAAAA+GGG - tig0041098:882-901 None:intergenic 20.0%
!!! TTTTGATTGAATAGAAGTTA+TGG - tig0041098:891-910 None:intergenic 20.0%
!!! CTTTGAAAATGTATATTGAA+AGG + tig0041098:1435-1454 Msa1460830:CDS 20.0%
!!! ATGTTAAAGTTGATAGAATT+AGG + tig0041098:1465-1484 Msa1460830:CDS 20.0%
!! GAAGAATCATAAGAAAATTA+AGG + tig0041098:1715-1734 Msa1460830:CDS 20.0%
!! TCATGATGACTATAATTTAA+AGG + tig0041098:1961-1980 Msa1460830:CDS 20.0%
!! TGAACTGTTCTAATTAATAT+TGG + tig0041098:2227-2246 Msa1460830:intron 20.0%
!! TAATAAAAACCAGAATGTTT+CGG - tig0041098:2276-2295 None:intergenic 20.0%
!! AAGAAAAATGTAATGTATTC+TGG + tig0041098:2595-2614 Msa1460830:intron 20.0%
!! AATTAAGAACTGTAGATAAA+AGG - tig0041098:3003-3022 None:intergenic 20.0%
!!! ATACACTTATCAATTTTTTG+CGG - tig0041098:3345-3364 None:intergenic 20.0%
!!! ACTTTGTAAAAGATTAGTTA+TGG - tig0041098:3471-3490 None:intergenic 20.0%
!!! TGAATTAAAATCATCACTTT+TGG - tig0041098:3897-3916 None:intergenic 20.0%
!!! TCACATTTTAGTTGAAAATT+TGG + tig0041098:3924-3943 Msa1460830:intron 20.0%
!! TTCATAATAATTACAAAGCA+TGG + tig0041098:4482-4501 Msa1460830:intron 20.0%
!! ATGTAACATATATTAGATCA+CGG - tig0041098:4593-4612 None:intergenic 20.0%
!! ATACGTTGAAAAATTATCAA+AGG + tig0041098:5078-5097 Msa1460830:three_prime_UTR 20.0%
! GATGAATTAGAAAAAGAGAA+AGG - tig0041098:554-573 None:intergenic 25.0%
!! TGTGTGAAAAGAAAATTTTC+TGG - tig0041098:635-654 None:intergenic 25.0%
! ATTTCCAGAAAATTTCCTTA+GGG + tig0041098:676-695 Msa1460830:five_prime_UTR 25.0%
! ATAGAAGTTATGGTAAAAAG+GGG - tig0041098:881-900 None:intergenic 25.0%
! GAATAGAAGTTATGGTAAAA+AGG - tig0041098:883-902 None:intergenic 25.0%
!! AGTTTTTACTGTATTTTCCA+TGG + tig0041098:1098-1117 Msa1460830:intron 25.0%
!!! ATGAGTATGTTTTGATCTTT+TGG - tig0041098:1207-1226 None:intergenic 25.0%
! ATCAAAACATACTCATGATT+CGG + tig0041098:1211-1230 Msa1460830:CDS 25.0%
! GAATCATAAGAAAATTAAGG+AGG + tig0041098:1718-1737 Msa1460830:CDS 25.0%
! AATATTGGTATTCTGTTTCA+TGG + tig0041098:2242-2261 Msa1460830:intron 25.0%
! TGATGAAAAAATGATGTCTT+TGG + tig0041098:2947-2966 Msa1460830:CDS 25.0%
!!! TTCAGTTTTGAGAACTTTTT+CGG + tig0041098:3040-3059 Msa1460830:intron 25.0%
!!! TACACTTATCAATTTTTTGC+GGG - tig0041098:3344-3363 None:intergenic 25.0%
!! AGTTATGGAAGACATTTTAA+AGG - tig0041098:3456-3475 None:intergenic 25.0%
!! AACTAATCTTTTACAAAGTC+AGG + tig0041098:3472-3491 Msa1460830:intron 25.0%
!! ATTTCTGCTTAAGTTTTACA+AGG - tig0041098:3519-3538 None:intergenic 25.0%
!! GAAATCTTATTTATCTTGCT+TGG + tig0041098:3633-3652 Msa1460830:intron 25.0%
!!! AAACACCGTATATTTTGAAT+TGG - tig0041098:3699-3718 None:intergenic 25.0%
! GTTGAAAAATTGTAATTCCT+TGG - tig0041098:3740-3759 None:intergenic 25.0%
!!! ACTTATTTTGCTTGAAGTTT+GGG - tig0041098:4046-4065 None:intergenic 25.0%
!!! AACTTATTTTGCTTGAAGTT+TGG - tig0041098:4047-4066 None:intergenic 25.0%
! ATAATTTCTGTGAAAAGGAT+GGG + tig0041098:4179-4198 Msa1460830:CDS 25.0%
! ATATGTTACATATATCACAC+AGG + tig0041098:4602-4621 Msa1460830:intron 25.0%
! TGAAAAGCTAAAAAGTTTGA+AGG + tig0041098:4644-4663 Msa1460830:CDS 25.0%
! TTTCCATTGCCTAATTAAAT+GGG - tig0041098:4811-4830 None:intergenic 25.0%
! ATTTCCATTGCCTAATTAAA+TGG - tig0041098:4812-4831 None:intergenic 25.0%
! ATAGAATTAGACTTAAATGC+AGG + tig0041098:4881-4900 Msa1460830:three_prime_UTR 25.0%
!! GGAAATTTGAAATTGTCTAT+TGG + tig0041098:5049-5068 Msa1460830:three_prime_UTR 25.0%
! AGAGAAAGGGTTTTTGAATT+TGG - tig0041098:540-559 None:intergenic 30.0%
GACACTAGAAAATGATGAAA+CGG - tig0041098:589-608 None:intergenic 30.0%
!! CTAAGGAAATTTTCTGGAAA+TGG - tig0041098:677-696 None:intergenic 30.0%
CATTTCCAGAAAATTTCCTT+AGG + tig0041098:675-694 Msa1460830:five_prime_UTR 30.0%
CGATTAACCAGTAGAAATTA+TGG - tig0041098:824-843 None:intergenic 30.0%
TACATTCAGTGATTAAATCG+AGG - tig0041098:970-989 None:intergenic 30.0%
CAGTAACTGAAAATAAACCA+TGG - tig0041098:1118-1137 None:intergenic 30.0%
TAGATATTACGAAGACTTGA+AGG + tig0041098:1253-1272 Msa1460830:CDS 30.0%
! TAATCCTTGTTGTAGCAAAA+CGG - tig0041098:1329-1348 None:intergenic 30.0%
! GTTGATAGAATTAGGTTATC+TGG + tig0041098:1473-1492 Msa1460830:CDS 30.0%
TGATAGAATTGCTAGTGATA+AGG + tig0041098:1496-1515 Msa1460830:CDS 30.0%
ACGTATTATGAATGTCGATA+AGG + tig0041098:1580-1599 Msa1460830:CDS 30.0%
CGTATTATGAATGTCGATAA+GGG + tig0041098:1581-1600 Msa1460830:CDS 30.0%
! CTCTTTTCCAAATTCAACAA+TGG - tig0041098:1816-1835 None:intergenic 30.0%
TTGTTGAATTTGGAAAAGAG+TGG + tig0041098:1816-1835 Msa1460830:CDS 30.0%
TGTTGAATTTGGAAAAGAGT+GGG + tig0041098:1817-1836 Msa1460830:CDS 30.0%
! CTTATCATTCTGTTGCATTT+TGG + tig0041098:2319-2338 Msa1460830:intron 30.0%
!!! TTGAACACACTTTTTCTGAT+AGG + tig0041098:2675-2694 Msa1460830:intron 30.0%
!! CTAACAACACTTTTTGTGAT+TGG - tig0041098:2780-2799 None:intergenic 30.0%
ATTTGACACAAAAGACCAAA+TGG - tig0041098:2821-2840 None:intergenic 30.0%
!! TTGTTGTTTACAGAATGAGA+TGG + tig0041098:2902-2921 Msa1460830:intron 30.0%
TTGAATGTTGCAGAAAGAAA+AGG + tig0041098:3063-3082 Msa1460830:intron 30.0%
TCTAGAAGAGAAGAAAAAAC+TGG + tig0041098:3207-3226 Msa1460830:CDS 30.0%
AAAACTGGAGGAAATCAAAA+TGG + tig0041098:3222-3241 Msa1460830:CDS 30.0%
! ATCTTTTACAAAGTCAGGAT+AGG + tig0041098:3477-3496 Msa1460830:intron 30.0%
GATTTGAATGTTTGCAAAAC+AGG - tig0041098:3605-3624 None:intergenic 30.0%
TATTTATCTTGCTTGGAAGA+CGG + tig0041098:3640-3659 Msa1460830:intron 30.0%
TTGTTCACGTGAATTTACAA+CGG + tig0041098:3673-3692 Msa1460830:intron 30.0%
AACGGCCAATTCAAAATATA+CGG + tig0041098:3691-3710 Msa1460830:intron 30.0%
AACCTTAGTTTCTATATCCA+AGG + tig0041098:3720-3739 Msa1460830:intron 30.0%
TTCCTTGGATATAGAAACTA+AGG - tig0041098:3725-3744 None:intergenic 30.0%
GATTCACATAATAGGATGAT+AGG - tig0041098:3762-3781 None:intergenic 30.0%
ATCCTATTATGTGAATCATG+TGG + tig0041098:3765-3784 Msa1460830:intron 30.0%
AACCACATGATTCACATAAT+AGG - tig0041098:3770-3789 None:intergenic 30.0%
TGAATTAAAACCATCACCTT+TGG - tig0041098:3833-3852 None:intergenic 30.0%
TTTGTCATATTGCTTCATAC+TGG + tig0041098:3998-4017 Msa1460830:intron 30.0%
ACTTCAAGCAAAATAAGTTC+AGG + tig0041098:4048-4067 Msa1460830:intron 30.0%
CAAACCAAACAATGAAATCA+TGG - tig0041098:4098-4117 None:intergenic 30.0%
! CATCCTTTTCACAGAAATTA+TGG - tig0041098:4180-4199 None:intergenic 30.0%
CATAATTTCTGTGAAAAGGA+TGG + tig0041098:4178-4197 Msa1460830:CDS 30.0%
!! ACTTGAGATTAAGCCATTTT+TGG + tig0041098:4205-4224 Msa1460830:CDS 30.0%
TTCATCAGAAAACTTTCTCT+TGG - tig0041098:4237-4256 None:intergenic 30.0%
TTATCAGTCTCAACTTTGAA+CGG - tig0041098:4368-4387 None:intergenic 30.0%
AAAGTTGAGACTGATAAAGA+CGG + tig0041098:4371-4390 Msa1460830:CDS 30.0%
! ATCACACAGGAAATTTTAGA+CGG + tig0041098:4615-4634 Msa1460830:intron 30.0%
AAAAGTTTGAAGGATGAGTT+CGG + tig0041098:4654-4673 Msa1460830:CDS 30.0%
TTTCCCATTTAATTAGGCAA+TGG + tig0041098:4805-4824 Msa1460830:CDS 30.0%
TAGGCAATGGAAATCAAATA+AGG + tig0041098:4818-4837 Msa1460830:CDS 30.0%
AGGCAATGGAAATCAAATAA+GGG + tig0041098:4819-4838 Msa1460830:CDS 30.0%
AAGGGAAAGAAAACTTATTG+AGG + tig0041098:4837-4856 Msa1460830:CDS 30.0%
AAACTTATTGAGGCTTCATT+TGG + tig0041098:4847-4866 Msa1460830:exon 30.0%
AACTTATTGAGGCTTCATTT+GGG + tig0041098:4848-4867 Msa1460830:exon 30.0%
!!! ATATCATGTAGGAGTACTTT+TGG + tig0041098:5006-5025 Msa1460830:three_prime_UTR 30.0%
!!! TATCATGTAGGAGTACTTTT+GGG + tig0041098:5007-5026 Msa1460830:three_prime_UTR 30.0%
!! AGGGTTTTTGAATTTGGTGA+AGG - tig0041098:534-553 None:intergenic 35.0%
! GAAACCCTAAGGAAATTTTC+TGG - tig0041098:683-702 None:intergenic 35.0%
ATGAAGAATACGAAACCCTA+AGG - tig0041098:694-713 None:intergenic 35.0%
AAGATGAAGAGATTTGAACG+CGG - tig0041098:766-785 None:intergenic 35.0%
!! AATTATGGTGTTACCTTGTG+CGG - tig0041098:809-828 None:intergenic 35.0%
GGTAACACCATAATTTCTAC+TGG + tig0041098:814-833 Msa1460830:intron 35.0%
TGTTTGTGTAGCTCTTTCTT+TGG + tig0041098:1150-1169 Msa1460830:intron 35.0%
CTTGAAGGATGATTACTACA+AGG + tig0041098:1268-1287 Msa1460830:CDS 35.0%
! AGACATGCTTCCAGAATTTT+GGG + tig0041098:1371-1390 Msa1460830:CDS 35.0%
!! TTGATGATGAGTTGTTTGTC+TGG + tig0041098:1627-1646 Msa1460830:CDS 35.0%
!! ACTAATTTTGACCCGAAAAG+CGG + tig0041098:1680-1699 Msa1460830:CDS 35.0%
CCAAATTCAACAATGGCAAA+GGG - tig0041098:1809-1828 None:intergenic 35.0%
TCCAAATTCAACAATGGCAA+AGG - tig0041098:1810-1829 None:intergenic 35.0%
ACAATGCTATGAAGTTAGAG+AGG + tig0041098:1849-1868 Msa1460830:CDS 35.0%
AGAGGGATTACTTAGGTTTA+AGG + tig0041098:1897-1916 Msa1460830:CDS 35.0%
GAGGGATTACTTAGGTTTAA+GGG + tig0041098:1898-1917 Msa1460830:CDS 35.0%
! TCAAATCCACATTTTCCTTC+AGG - tig0041098:2003-2022 None:intergenic 35.0%
GTGGATTTGAAAACAGTTTC+TGG + tig0041098:2013-2032 Msa1460830:CDS 35.0%
!! AGTCTTCTGCTTTAAGGTAT+TGG - tig0041098:2089-2108 None:intergenic 35.0%
TTCATCAGTCTTCTGCTTTA+AGG - tig0041098:2095-2114 None:intergenic 35.0%
AAAGCAGAAGACTGATGAAT+TGG + tig0041098:2096-2115 Msa1460830:CDS 35.0%
TTTGATCCATCACTTTCCTT+AGG - tig0041098:2159-2178 None:intergenic 35.0%
! ATGCTTGAAGCTTTTAACGA+GGG + tig0041098:2187-2206 Msa1460830:CDS 35.0%
CATTAGAAATCAGCAAGATG+CGG + tig0041098:2416-2435 Msa1460830:intron 35.0%
!! ATTCTGGCTCTGTGAATTTA+TGG + tig0041098:2611-2630 Msa1460830:intron 35.0%
! GAAAAAGTGTGTTCAAGAGA+GGG - tig0041098:2671-2690 None:intergenic 35.0%
! AGAAAAAGTGTGTTCAAGAG+AGG - tig0041098:2672-2691 None:intergenic 35.0%
TGTTAGCATTCCTTACTCTA+TGG + tig0041098:2794-2813 Msa1460830:intron 35.0%
TCACAAGAAAATTCATGACC+TGG + tig0041098:3093-3112 Msa1460830:CDS 35.0%
ACTTGATGCAAAACAAGCAT+TGG + tig0041098:3123-3142 Msa1460830:CDS 35.0%
!! TGCAAAACAAGCATTGGAAT+TGG + tig0041098:3129-3148 Msa1460830:CDS 35.0%
CATTGGAATTGGAGATAGAA+CGG + tig0041098:3140-3159 Msa1460830:CDS 35.0%
TTCCAGGTAATGAATCACAT+TGG + tig0041098:3175-3194 Msa1460830:CDS 35.0%
AGAAGAGAAGAAAAAACTGG+AGG + tig0041098:3210-3229 Msa1460830:CDS 35.0%
TTGGCTATCAACTCATCTAA+TGG + tig0041098:3418-3437 Msa1460830:intron 35.0%
GTTGAAAATTTGGTAGAGTC+AGG + tig0041098:3934-3953 Msa1460830:intron 35.0%
CGAACAAGGAAAAGAATTAC+TGG - tig0041098:4123-4142 None:intergenic 35.0%
GAGCCATAATTTCTGTGAAA+AGG + tig0041098:4174-4193 Msa1460830:CDS 35.0%
AAGTTGAGACTGATAAAGAC+GGG + tig0041098:4372-4391 Msa1460830:CDS 35.0%
!! ATTCTGGAGTTATTGTACCA+TGG - tig0041098:4402-4421 None:intergenic 35.0%
AAAGTTTGAAGGATGAGTTC+GGG + tig0041098:4655-4674 Msa1460830:CDS 35.0%
! AGGGTGTTTCCCATTTAATT+AGG + tig0041098:4799-4818 Msa1460830:CDS 35.0%
! ATTCTAGCTGTAACTGACTT+TGG + tig0041098:4917-4936 Msa1460830:three_prime_UTR 35.0%
! GAAGTATTAACACCAACCAT+TGG - tig0041098:4961-4980 None:intergenic 35.0%
!!! TTCTCTCGTTTTTTCTCCTC+TGG + tig0041098:725-744 Msa1460830:five_prime_UTR 40.0%
AGATTTGAACGCGGAATCAA+CGG - tig0041098:757-776 None:intergenic 40.0%
!! ATTATGGTGTTACCTTGTGC+GGG - tig0041098:808-827 None:intergenic 40.0%
AGCTCAAAATCTCTGATTCC+AGG + tig0041098:1294-1313 Msa1460830:CDS 40.0%
! GAGACATGCTTCCAGAATTT+TGG + tig0041098:1370-1389 Msa1460830:CDS 40.0%
! ATTGCTAGTGATAAGGTACC+TGG + tig0041098:1503-1522 Msa1460830:CDS 40.0%
TCACTAGCATTACTAACACC+AGG - tig0041098:1524-1543 None:intergenic 40.0%
TTAGCCAATATGACCATCCA+TGG - tig0041098:1653-1672 None:intergenic 40.0%
!! CAACATACTTTCCGCTTTTC+GGG - tig0041098:1694-1713 None:intergenic 40.0%
!! CCAACATACTTTCCGCTTTT+CGG - tig0041098:1695-1714 None:intergenic 40.0%
! CGAAAAGCGGAAAGTATGTT+GGG + tig0041098:1693-1712 Msa1460830:CDS 40.0%
CACAGCGTTGTAACTCTAAT+CGG - tig0041098:1767-1786 None:intergenic 40.0%
CCCTTTGCCATTGTTGAATT+TGG + tig0041098:1806-1825 Msa1460830:CDS 40.0%
GAATTTGGAAAAGAGTGGGA+TGG + tig0041098:1821-1840 Msa1460830:CDS 40.0%
TGTGGTAAGAGGGATTACTT+AGG + tig0041098:1890-1909 Msa1460830:CDS 40.0%
TTACTTAGGTTTAAGGGAGC+AGG + tig0041098:1904-1923 Msa1460830:CDS 40.0%
AGATAGACTATTTGGCTGGA+TGG + tig0041098:1934-1953 Msa1460830:CDS 40.0%
TATAGTTGGCAAACACCTGA+AGG + tig0041098:1985-2004 Msa1460830:CDS 40.0%
CAAACACCTGAAGGAAAATG+TGG + tig0041098:1994-2013 Msa1460830:CDS 40.0%
! AGTTTCTGGAAAAGAAGCTG+AGG + tig0041098:2027-2046 Msa1460830:CDS 40.0%
GACAGCAAGCAAATATGATG+AGG + tig0041098:2123-2142 Msa1460830:CDS 40.0%
ATGAGGCTAATGCATTCCTA+AGG + tig0041098:2140-2159 Msa1460830:CDS 40.0%
TGCATTCCTAAGGAAAGTGA+TGG + tig0041098:2150-2169 Msa1460830:CDS 40.0%
! GATGCTTGAAGCTTTTAACG+AGG + tig0041098:2186-2205 Msa1460830:CDS 40.0%
! GATTTAGAGCCGAAACATTC+TGG + tig0041098:2264-2283 Msa1460830:intron 40.0%
!! CGCATCTTGCTGATTTCTAA+TGG - tig0041098:2418-2437 None:intergenic 40.0%
!! GTATCAGGAGAAAGTATCGA+AGG + tig0041098:2453-2472 Msa1460830:CDS 40.0%
CGAAGGATCATGAAATAGCT+AGG + tig0041098:2470-2489 Msa1460830:CDS 40.0%
AGGATCATGAAATAGCTAGG+CGG + tig0041098:2473-2492 Msa1460830:CDS 40.0%
GTGTTCAAGAGAGGGTTAAA+AGG - tig0041098:2663-2682 None:intergenic 40.0%
TCCTTACTCTATGGACCATT+TGG + tig0041098:2803-2822 Msa1460830:intron 40.0%
ACCAAATGGTCCATAGAGTA+AGG - tig0041098:2807-2826 None:intergenic 40.0%
GGCAATAGAAGAGCAACAAA+AGG + tig0041098:2923-2942 Msa1460830:CDS 40.0%
GTCTTTGGCTGAAGAACATA+AGG + tig0041098:2962-2981 Msa1460830:CDS 40.0%
AAAATTCATGACCTGGAGAG+AGG + tig0041098:3100-3119 Msa1460830:CDS 40.0%
CTCCAATGTGATTCATTACC+TGG - tig0041098:3180-3199 None:intergenic 40.0%
GAAAAAGAAGAGGAGTTGGA+AGG + tig0041098:3253-3272 Msa1460830:CDS 40.0%
! CACTTTTGGACACAAACAAC+TGG - tig0041098:3883-3902 None:intergenic 40.0%
! ATTCTTTTCCTTGTTCGCAG+TGG + tig0041098:4126-4145 Msa1460830:intron 40.0%
TTCACAGAAATTATGGCTCG+AGG - tig0041098:4173-4192 None:intergenic 40.0%
AAGCACAACTTCGCGAAAAA+TGG + tig0041098:4279-4298 Msa1460830:CDS 40.0%
TGATAAAGACGGGAAATCCA+TGG + tig0041098:4382-4401 Msa1460830:CDS 40.0%
GGTTCATGCAGTTCATATCA+GGG - tig0041098:4572-4591 None:intergenic 40.0%
AAGTTTGAAGGATGAGTTCG+GGG + tig0041098:4656-4675 Msa1460830:CDS 40.0%
TTAAACGAGTACAACCCTAG+TGG + tig0041098:4717-4736 Msa1460830:CDS 40.0%
!!! TACCGGAACTCTGGAATTTT+AGG + tig0041098:4751-4770 Msa1460830:CDS 40.0%
!!! ACCGGAACTCTGGAATTTTA+GGG + tig0041098:4752-4771 Msa1460830:CDS 40.0%
TCCCTAAAATTCCAGAGTTC+CGG - tig0041098:4756-4775 None:intergenic 40.0%
!!! GAACTCTGGAATTTTAGGGA+AGG + tig0041098:4756-4775 Msa1460830:CDS 40.0%
!! TCTGGAATTTTAGGGAAGGA+AGG + tig0041098:4760-4779 Msa1460830:CDS 40.0%
TTATTGAGGCTTCATTTGGG+TGG + tig0041098:4851-4870 Msa1460830:exon 40.0%
CAATCCAATCACAATGCCAA+TGG + tig0041098:4942-4961 Msa1460830:three_prime_UTR 40.0%
GGTTCAAACTTAGAAACGAG+TGG + tig0041098:5028-5047 Msa1460830:three_prime_UTR 40.0%
TTGAGTAATCTTCCCGCACA+AGG + tig0041098:793-812 Msa1460830:five_prime_UTR 45.0%
! CTGTCCGTTTTGCTACAACA+AGG + tig0041098:1322-1341 Msa1460830:CDS 45.0%
ATGAGTTGTTTGTCTGGCCA+TGG + tig0041098:1633-1652 Msa1460830:CDS 45.0%
! CCGAAAAGCGGAAAGTATGT+TGG + tig0041098:1692-1711 Msa1460830:CDS 45.0%
AAGGAGGAGCTGAACATGAA+AGG + tig0041098:1734-1753 Msa1460830:CDS 45.0%
AGGAGGAGCTGAACATGAAA+GGG + tig0041098:1735-1754 Msa1460830:CDS 45.0%
CGATTAGAGTTACAACGCTG+TGG + tig0041098:1765-1784 Msa1460830:CDS 45.0%
!! CAAAGGGTGTTTGTCCTCTA+GGG - tig0041098:1793-1812 None:intergenic 45.0%
GAAGTTAGAGAGGAGCTTTC+AGG + tig0041098:1859-1878 Msa1460830:CDS 45.0%
GAGCGAGGAGATAGACTATT+TGG + tig0041098:1926-1945 Msa1460830:CDS 45.0%
GAGGAGATAGACTATTTGGC+TGG + tig0041098:1930-1949 Msa1460830:CDS 45.0%
GAAAAGAAGCTGAGGACACA+AGG + tig0041098:2035-2054 Msa1460830:CDS 45.0%
AAAGCGAAGACGCTTGTCTT+TGG + tig0041098:2058-2077 Msa1460830:CDS 45.0%
GAAGACGCTTGTCTTTGGTT+TGG + tig0041098:2063-2082 Msa1460830:CDS 45.0%
GGATCATGAAATAGCTAGGC+GGG + tig0041098:2474-2493 Msa1460830:CDS 45.0%
TGAACTCAAGTCCCGTGAAA+AGG + tig0041098:2516-2535 Msa1460830:CDS 45.0%
! CTTCTGCAGATCCTTTTCAC+GGG - tig0041098:2530-2549 None:intergenic 45.0%
! GCTTCTGCAGATCCTTTTCA+CGG - tig0041098:2531-2550 None:intergenic 45.0%
TTGGAGATAGAACGGCTGAA+AGG + tig0041098:3148-3167 Msa1460830:CDS 45.0%
GGAAATCAAAATGGAGCTGC+AGG + tig0041098:3231-3250 Msa1460830:CDS 45.0%
GCAGGAAAAAGAAGAGGAGT+TGG + tig0041098:3249-3268 Msa1460830:CDS 45.0%
GGAAGATCTTCAACAGACAC+TGG + tig0041098:3279-3298 Msa1460830:CDS 45.0%
TCACCTTTGGACACAGACAA+CGG - tig0041098:3820-3839 None:intergenic 45.0%
TTGTCTGTGTCCAAAGGTGA+TGG + tig0041098:3820-3839 Msa1460830:intron 45.0%
!! AGTTTGTTGCTGTTGCCTTG+CGG + tig0041098:4072-4091 Msa1460830:intron 45.0%
ACAATGAAATCATGGCCGCA+AGG - tig0041098:4090-4109 None:intergenic 45.0%
GCGGCCATGATTTCATTGTT+TGG + tig0041098:4091-4110 Msa1460830:intron 45.0%
TTTCCTTGTTCGCAGTGGAT+TGG + tig0041098:4131-4150 Msa1460830:intron 45.0%
CTCTTGGCTGCTTCCAAAAA+TGG - tig0041098:4221-4240 None:intergenic 45.0%
GGCAATTGAAAGCAATCGAG+TGG + tig0041098:4300-4319 Msa1460830:CDS 45.0%
AATCGAGTGGTGCTCAAAGT+GGG + tig0041098:4313-4332 Msa1460830:CDS 45.0%
ACTGTCTTAAAGATCCCAGC+TGG + tig0041098:4339-4358 Msa1460830:CDS 45.0%
TGCCAAATAAGTGCTAGCAG+CGG - tig0041098:4540-4559 None:intergenic 45.0%
CGGTTCATGCAGTTCATATC+AGG - tig0041098:4573-4592 None:intergenic 45.0%
AATTCCAGAGTTCCGGTACT+GGG - tig0041098:4749-4768 None:intergenic 45.0%
AAATTCCAGAGTTCCGGTAC+TGG - tig0041098:4750-4769 None:intergenic 45.0%
CCAACCATTGGCATTGTGAT+TGG - tig0041098:4949-4968 None:intergenic 45.0%
CCAATCACAATGCCAATGGT+TGG + tig0041098:4946-4965 Msa1460830:three_prime_UTR 45.0%
GAATCAACGGCGAATACCAG+AGG - tig0041098:744-763 None:intergenic 50.0%
ACGCGAGTCACCCAAAATTC+TGG - tig0041098:1384-1403 None:intergenic 50.0%
GTTGTTTGTCTGGCCATGGA+TGG + tig0041098:1637-1656 Msa1460830:CDS 50.0%
CTGGCCATGGATGGTCATAT+TGG + tig0041098:1646-1665 Msa1460830:CDS 50.0%
!! GCAAAGGGTGTTTGTCCTCT+AGG - tig0041098:1794-1813 None:intergenic 50.0%
AGAAATCAGCAAGATGCGGC+AGG + tig0041098:2420-2439 Msa1460830:intron 50.0%
TGAAATAGCTAGGCGGGAAC+TGG + tig0041098:2480-2499 Msa1460830:CDS 50.0%
TTGCATCAAGTCCTCTCTCC+AGG - tig0041098:3114-3133 None:intergenic 50.0%
GGAGCTGCAGGAAAAAGAAG+AGG + tig0041098:3243-3262 Msa1460830:CDS 50.0%
ATCCCGTTGTCTGTGTCCAA+AGG + tig0041098:3814-3833 Msa1460830:intron 50.0%
CACCTTTGGACACAGACAAC+GGG - tig0041098:3819-3838 None:intergenic 50.0%
CATCCAATCCACTGCGAACA+AGG - tig0041098:4137-4156 None:intergenic 50.0%
!! GTGGATTGGATGCCCAAAGA+AGG + tig0041098:4145-4164 Msa1460830:intron 50.0%
CAATCGAGTGGTGCTCAAAG+TGG + tig0041098:4312-4331 Msa1460830:CDS 50.0%
ACTTTGAACGGATGCCAGCT+GGG - tig0041098:4356-4375 None:intergenic 50.0%
AACTTTGAACGGATGCCAGC+TGG - tig0041098:4357-4376 None:intergenic 50.0%
TGCCGCTGCTAGCACTTATT+TGG + tig0041098:4535-4554 Msa1460830:intron 50.0%
! TGCAGTAGCTACAGCTCTGA+AGG + tig0041098:4692-4711 Msa1460830:CDS 50.0%
ACGAGTACAACCCTAGTGGT+AGG + tig0041098:4721-4740 Msa1460830:CDS 50.0%
GTACTGGGTACCTACCACTA+GGG - tig0041098:4734-4753 None:intergenic 50.0%
TAGTGGTAGGTACCCAGTAC+CGG + tig0041098:4734-4753 Msa1460830:CDS 50.0%
AGGAAGGAAAGCCTCGTTGA+AGG + tig0041098:4776-4795 Msa1460830:CDS 50.0%
AAGGAAAGCCTCGTTGAAGG+AGG + tig0041098:4779-4798 Msa1460830:CDS 50.0%
AGGAAAGCCTCGTTGAAGGA+GGG + tig0041098:4780-4799 Msa1460830:CDS 50.0%
GCAAAACGGACAGCGATACC+TGG - tig0041098:1315-1334 None:intergenic 55.0%
TTTGGGTGACTCGCGTGAGA+CGG + tig0041098:1388-1407 Msa1460830:CDS 55.0%
ACAACGCTGTGGAACCCTAG+AGG + tig0041098:1776-1795 Msa1460830:CDS 55.0%
!! AGCTTTCAGGCAGAGCACTG+TGG + tig0041098:1872-1891 Msa1460830:CDS 55.0%
!! AGGCAGAGCACTGTGGTAAG+AGG + tig0041098:1879-1898 Msa1460830:CDS 55.0%
!! GGCAGAGCACTGTGGTAAGA+GGG + tig0041098:1880-1899 Msa1460830:CDS 55.0%
! GCAGGTTGAACGCGAGTATC+AGG + tig0041098:2438-2457 Msa1460830:CDS 55.0%
ACGGCTGAAAGGAGCTTTCC+AGG + tig0041098:3159-3178 Msa1460830:CDS 55.0%
AGAAGAGGAGTTGGAAGGCG+TGG + tig0041098:3258-3277 Msa1460830:CDS 55.0%
TGGCTCGAGGAGCCTTCTTT+GGG - tig0041098:4160-4179 None:intergenic 55.0%
ATGGCTCGAGGAGCCTTCTT+TGG - tig0041098:4161-4180 None:intergenic 55.0%
TGCTAGCAGCGGCAAGTTTC+AGG - tig0041098:4529-4548 None:intergenic 55.0%
GAAGGATGAGTTCGGGGATG+AGG + tig0041098:4662-4681 Msa1460830:CDS 55.0%
! GGTACTGGGTACCTACCACT+AGG - tig0041098:4735-4754 None:intergenic 55.0%
GGAAACACCCTCCTTCAACG+AGG - tig0041098:4790-4809 None:intergenic 55.0%
GGTTTAAGGGAGCAGGAGCG+AGG + tig0041098:1911-1930 Msa1460830:CDS 60.0%
CTAGGCGGGAACTGGAAGCT+CGG + tig0041098:2488-2507 Msa1460830:CDS 60.0%
! GGTACCCAGTACCGGAACTC+TGG + tig0041098:4742-4761 Msa1460830:CDS 60.0%
GGCGGGAACTGGAAGCTCGG+AGG + tig0041098:2491-2510 Msa1460830:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0041098 gene 529 5101 529 ID=Msa1460830;Name=Msa1460830
tig0041098 mRNA 529 5101 529 ID=Msa1460830-mRNA-1;Parent=Msa1460830;Name=Msa1460830-mRNA-1;_AED=0.26;_eAED=0.26;_QI=286|1|1|1|0.83|0.85|7|244|678
tig0041098 exon 529 814 529 ID=Msa1460830-mRNA-1:exon:22901;Parent=Msa1460830-mRNA-1
tig0041098 exon 1200 2208 1200 ID=Msa1460830-mRNA-1:exon:22902;Parent=Msa1460830-mRNA-1
tig0041098 exon 2422 2603 2422 ID=Msa1460830-mRNA-1:exon:22903;Parent=Msa1460830-mRNA-1
tig0041098 exon 2915 2983 2915 ID=Msa1460830-mRNA-1:exon:22904;Parent=Msa1460830-mRNA-1
tig0041098 exon 3076 3360 3076 ID=Msa1460830-mRNA-1:exon:22905;Parent=Msa1460830-mRNA-1
tig0041098 exon 4146 4403 4146 ID=Msa1460830-mRNA-1:exon:22906;Parent=Msa1460830-mRNA-1
tig0041098 exon 4624 5101 4624 ID=Msa1460830-mRNA-1:exon:22907;Parent=Msa1460830-mRNA-1
tig0041098 five_prime_UTR 529 814 529 ID=Msa1460830-mRNA-1:five_prime_utr;Parent=Msa1460830-mRNA-1
tig0041098 CDS 1200 2208 1200 ID=Msa1460830-mRNA-1:cds;Parent=Msa1460830-mRNA-1
tig0041098 CDS 2422 2603 2422 ID=Msa1460830-mRNA-1:cds;Parent=Msa1460830-mRNA-1
tig0041098 CDS 2915 2983 2915 ID=Msa1460830-mRNA-1:cds;Parent=Msa1460830-mRNA-1
tig0041098 CDS 3076 3360 3076 ID=Msa1460830-mRNA-1:cds;Parent=Msa1460830-mRNA-1
tig0041098 CDS 4146 4403 4146 ID=Msa1460830-mRNA-1:cds;Parent=Msa1460830-mRNA-1
tig0041098 CDS 4624 4857 4624 ID=Msa1460830-mRNA-1:cds;Parent=Msa1460830-mRNA-1
tig0041098 three_prime_UTR 4858 5101 4858 ID=Msa1460830-mRNA-1:three_prime_utr;Parent=Msa1460830-mRNA-1
Gene Sequence

>Msa1460830

ATGTCCAAAAGATCAAAACATACTCATGATTCGGATTATGAATACTACGAGAGTAGATATTACGAAGACTTGAAGGATGATTACTACAAGGACAAGCTCAAAATCTCTGATTCCAGGTATCGCTGTCCGTTTTGCTACAACAAGGATTACTACTCTTTGAGCGAGTTATTGAGACATGCTTCCAGAATTTTGGGTGACTCGCGTGAGACGGATAAAGAAATTGCTAAACACTCTGCTTTGAAAATGTATATTGAAAGGTATCTAGATGTTAAAGTTGATAGAATTAGGTTATCTGGTGATAGAATTGCTAGTGATAAGGTACCTGGTGTTAGTAATGCTAGTGATAAGACTGTTAATTTGAGTATCGCTAATGAGAAGTCACGTATTATGAATGTCGATAAGGGTCAGTTAGCTAACAAGAACGTCGTTGATGATGAGTTGTTTGTCTGGCCATGGATGGTCATATTGGCTAACAATGTTACTAATTTTGACCCGAAAAGCGGAAAGTATGTTGGGAAGAATCATAAGAAAATTAAGGAGGAGCTGAACATGAAAGGGTTTCAGCCGATTAGAGTTACAACGCTGTGGAACCCTAGAGGACAAACACCCTTTGCCATTGTTGAATTTGGAAAAGAGTGGGATGGTTTTGACAATGCTATGAAGTTAGAGAGGAGCTTTCAGGCAGAGCACTGTGGTAAGAGGGATTACTTAGGTTTAAGGGAGCAGGAGCGAGGAGATAGACTATTTGGCTGGATGGCACGTCATGATGACTATAATTTAAAGGATATAGTTGGCAAACACCTGAAGGAAAATGTGGATTTGAAAACAGTTTCTGGAAAAGAAGCTGAGGACACAAGGAAAGCGAAGACGCTTGTCTTTGGTTTGGCCAATACCTTAAAGCAGAAGACTGATGAATTGGAACAGACAGCAAGCAAATATGATGAGGCTAATGCATTCCTAAGGAAAGTGATGGATCAAAAAGAGAAGATGCTTGAAGCTTTTAACGAGGAAATCAGCAAGATGCGGCAGGTTGAACGCGAGTATCAGGAGAAAGTATCGAAGGATCATGAAATAGCTAGGCGGGAACTGGAAGCTCGGAGGAATGAACTCAAGTCCCGTGAAAAGGATCTGCAGAAGCGTCAAGCAGATAATCTCAATGAGAGAAACAAGCTATATCTTGAGAAGAAAAATAATGAGATGGCAATAGAAGAGCAACAAAAGGCTGATGAAAAAATGATGTCTTTGGCTGAAGAACATAAGAAAGAAAAGGAGAAACTTCACAAGAAAATTCATGACCTGGAGAGAGGACTTGATGCAAAACAAGCATTGGAATTGGAGATAGAACGGCTGAAAGGAGCTTTCCAGGTAATGAATCACATTGGAGAGACTGATCTAGAAGAGAAGAAAAAACTGGAGGAAATCAAAATGGAGCTGCAGGAAAAAGAAGAGGAGTTGGAAGGCGTGGAAGATCTTCAACAGACACTGGTTGTTCAAGAGCGAAAAACTAATGACGAGTTGCAAGATGCCCGCAAAAAATTGATAAGTTGGATTGGATGCCCAAAGAAGGCTCCTCGAGCCATAATTTCTGTGAAAAGGATGGGTGAACTTGAGATTAAGCCATTTTTGGAAGCAGCCAAGAGAAAGTTTTCTGATGAAGTGAATGAGAAAAAAGCAACTAAAGCACAACTTCGCGAAAAATGGCAATTGAAAGCAATCGAGTGGTGCTCAAAGTGGGATGACTGTCTTAAAGATCCCAGCTGGCATCCGTTCAAAGTTGAGACTGATAAAGACGGGAAATCCATGGAAATTTTAGACGGAGAAGATGAAAAGCTAAAAAGTTTGAAGGATGAGTTCGGGGATGAGGTGCATGATGCAGTAGCTACAGCTCTGAAGGAGTTAAACGAGTACAACCCTAGTGGTAGGTACCCAGTACCGGAACTCTGGAATTTTAGGGAAGGAAGGAAAGCCTCGTTGAAGGAGGGTGTTTCCCATTTAATTAGGCAATGGAAATCAAATAAGGGAAAGAAAACTTATTGA
Protein sequence

>Msa1460830

MSKRSKHTHDSDYEYYESRYYEDLKDDYYKDKLKISDSRYRCPFCYNKDYYSLSELLRHASRILGDSRETDKEIAKHSALKMYIERYLDVKVDRIRLSGDRIASDKVPGVSNASDKTVNLSIANEKSRIMNVDKGQLANKNVVDDELFVWPWMVILANNVTNFDPKSGKYVGKNHKKIKEELNMKGFQPIRVTTLWNPRGQTPFAIVEFGKEWDGFDNAMKLERSFQAEHCGKRDYLGLREQERGDRLFGWMARHDDYNLKDIVGKHLKENVDLKTVSGKEAEDTRKAKTLVFGLANTLKQKTDELEQTASKYDEANAFLRKVMDQKEKMLEAFNEEISKMRQVEREYQEKVSKDHEIARRELEARRNELKSREKDLQKRQADNLNERNKLYLEKKNNEMAIEEQQKADEKMMSLAEEHKKEKEKLHKKIHDLERGLDAKQALELEIERLKGAFQVMNHIGETDLEEKKKLEEIKMELQEKEEELEGVEDLQQTLVVQERKTNDELQDARKKLISWIGCPKKAPRAIISVKRMGELEIKPFLEAAKRKFSDEVNEKKATKAQLREKWQLKAIEWCSKWDDCLKDPSWHPFKVETDKDGKSMEILDGEDEKLKSLKDEFGDEVHDAVATALKELNEYNPSGRYPVPELWNFREGRKASLKEGVSHLIRQWKSNKGKKTY*