AlfalfaGEDB | Msa0223010

M. sativa cultivar zhongmu-4 / Msa0223010

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904
PFAM: PF03470.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0223010	XP_013465410.1	90.560	678	41	2	1	655	1	678	0.0	1162

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0223010	sp\|Q9LMH6\|FDM4_ARATH	45.747	529	242	7	145	646	216	726	8.38e-131	405

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0223010	A0A072VMV0	90.560	678	41	2	1	655	1	678	0.0	1162

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002230	Msa0223010	0.854003	1.643357e-61	-8.615850e-47
Msa0002240	Msa0223010	0.818022	2.434057e-52	-8.615850e-47
Msa0003890	Msa0223010	0.856284	3.570564e-62	-8.615850e-47
Msa0006070	Msa0223010	0.839590	1.446949e-57	-8.615850e-47
Msa0006110	Msa0223010	0.844656	6.603844e-59	-8.615850e-47
Msa0007440	Msa0223010	0.822859	1.890868e-53	-8.615850e-47
Msa0009180	Msa0223010	0.810326	1.218791e-50	-8.615850e-47
Msa0011170	Msa0223010	0.847987	8.164015e-60	-8.615850e-47
Msa0012040	Msa0223010	0.812473	4.165094e-51	-8.615850e-47
Msa0012060	Msa0223010	0.803004	4.286936e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0223010	MtrunA17_Chr2g0328241	90.560	678	41	2	1	655	1	678	0.0	1162
Msa0223010	MtrunA17_Chr2g0328251	74.928	694	135	3	1	655	1	694	0.0	1001
Msa0223010	MtrunA17_Chr4g0024031	78.331	683	107	3	1	655	1	670	0.0	979
Msa0223010	MtrunA17_Chr2g0327251	78.179	582	106	2	74	655	8	568	0.0	846
Msa0223010	MtrunA17_Chr2g0328231	80.381	367	54	3	305	655	2	366	0.0	541
Msa0223010	MtrunA17_Chr3g0111661	37.722	676	334	13	10	650	13	636	2.41e-139	421
Msa0223010	MtrunA17_Chr4g0071151	76.046	263	47	3	397	655	3	253	2.21e-132	389
Msa0223010	MtrunA17_Chr5g0435301	36.484	677	347	17	16	653	487	1119	9.78e-125	396
Msa0223010	MtrunA17_Chr4g0074301	34.621	673	342	15	16	653	19	628	1.48e-105	333
Msa0223010	MtrunA17_Chr4g0070931	33.921	681	336	16	16	653	19	628	1.16e-103	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0223010	AT1G13790.2	45.747	529	242	7	145	646	216	726	8.51e-132	405
Msa0223010	AT1G13790.2	49.333	75	33	3	17	88	11	83	4.79e-11	66.6
Msa0223010	AT1G13790.1	45.747	529	242	7	145	646	216	726	8.51e-132	405
Msa0223010	AT1G13790.1	49.333	75	33	3	17	88	11	83	4.79e-11	66.6
Msa0223010	AT3G48670.2	33.630	675	357	14	16	653	24	644	2.02e-104	331
Msa0223010	AT3G48670.1	33.630	675	357	14	16	653	24	644	2.02e-104	331
Msa0223010	AT3G48670.3	33.630	675	357	14	16	653	24	644	2.02e-104	331
Msa0223010	AT3G12550.5	33.776	678	362	15	16	654	8	637	2.09e-103	328
Msa0223010	AT3G12550.4	33.726	679	362	16	16	654	8	638	2.24e-102	325
Msa0223010	AT3G12550.2	33.726	679	362	16	16	654	8	638	2.24e-102	325

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Find 170 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGAGGAAATCAAAA+TGG	0.356376	2_1:-72426545	Msa0223010:CDS
AAAAGTTTGAAGGATGAGTT+CGG	0.454559	2_1:-72425102	Msa0223010:CDS
AAAATAAACGTGACCTGGGT+GGG	0.546156	2_1:+72429346	None:intergenic
AAAATTCATGACCTGGAGAG+AGG	0.591924	2_1:-72426667	Msa0223010:CDS
AAACTTATTGAGGCTTCATT+TGG	0.288030	2_1:-72424909	Msa0223010:exon
AAAGCAGAAGACTGATGAAT+TGG	0.362538	2_1:-72427671	Msa0223010:CDS
AAAGCGAAGACGCTTGTCTT+TGG	0.372401	2_1:-72427709	Msa0223010:CDS
AAAGTTGAGACTGATAAAGA+CGG	0.607016	2_1:-72425396	Msa0223010:CDS
AAAGTTTGAAGGATGAGTTC+GGG	0.354846	2_1:-72425101	Msa0223010:CDS
AAATTCCAGAGTTCCGGTAC+TGG	0.463412	2_1:+72425009	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAATTATCATATGACACG+TGG	+	chr2_1:72424726-72424745	None:intergenic	30.0%
GACACTAGAAAATGATGAAA+CGG	+	chr2_1:72424990-72425009	None:intergenic	30.0%
CATTTCCAGAAAATTTCCTT+AGG	-	chr2_1:72425076-72425095	Msa0223010:CDS	30.0%
CGATTAACCAGTAGAAATTA+TGG	+	chr2_1:72425225-72425244	None:intergenic	30.0%
TACATTCAGTGATTAAATCG+AGG	+	chr2_1:72425371-72425390	None:intergenic	30.0%
CAGTAACTGAAAATAAACCA+TGG	+	chr2_1:72425519-72425538	None:intergenic	30.0%
TAGATATTACGAAGACTTGA+AGG	-	chr2_1:72425654-72425673	Msa0223010:intron	30.0%
TGATAGAATTGCTAGTGATA+AGG	-	chr2_1:72425897-72425916	Msa0223010:intron	30.0%
ACGTATTATGAATGTCGATA+AGG	-	chr2_1:72425981-72426000	Msa0223010:intron	30.0%
CGTATTATGAATGTCGATAA+GGG	-	chr2_1:72425982-72426001	Msa0223010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	72424677	72429513	72424677	ID=Msa0223010;Name=Msa0223010
chr2_1	mRNA	72424677	72429513	72424677	ID=Msa0223010-mRNA-1;Parent=Msa0223010;Name=Msa0223010-mRNA-1;_AED=0.26;_eAED=0.26;_QI=539\|0.8\|1\|1\|0.8\|0.83\|6\|244\|655
chr2_1	exon	72424677	72425154	72424677	ID=Msa0223010-mRNA-1:exon:20978;Parent=Msa0223010-mRNA-1
chr2_1	exon	72425386	72425643	72425386	ID=Msa0223010-mRNA-1:exon:20977;Parent=Msa0223010-mRNA-1
chr2_1	exon	72426429	72426713	72426429	ID=Msa0223010-mRNA-1:exon:20976;Parent=Msa0223010-mRNA-1
chr2_1	exon	72427186	72427367	72427186	ID=Msa0223010-mRNA-1:exon:20975;Parent=Msa0223010-mRNA-1
chr2_1	exon	72427581	72428589	72427581	ID=Msa0223010-mRNA-1:exon:20974;Parent=Msa0223010-mRNA-1
chr2_1	exon	72428975	72429513	72428975	ID=Msa0223010-mRNA-1:exon:20973;Parent=Msa0223010-mRNA-1
chr2_1	five_prime_UTR	72428975	72429513	72428975	ID=Msa0223010-mRNA-1:five_prime_utr;Parent=Msa0223010-mRNA-1
chr2_1	CDS	72427581	72428589	72427581	ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1	CDS	72427186	72427367	72427186	ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1	CDS	72426429	72426713	72426429	ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1	CDS	72425386	72425643	72425386	ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1	CDS	72424921	72425154	72424921	ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1	three_prime_UTR	72424677	72424920	72424677	ID=Msa0223010-mRNA-1:three_prime_utr;Parent=Msa0223010-mRNA-1

Gene Sequence

>Msa0223010

ATGTCCAAAAGATCAAAACATACTCATGATTCGGATTATGAATACTACGAGAGTAGATATTACGAAGACTTGAAGGATGATTACTACAAGGACAAGCTCAAAATCTCTGATTCCAGGTATCGCTGTCCGTTTTGCTACAACAAGGATTACTACTCTTTGAGCGAGTTATTGAGACATGCTTCCAGAATTTTGGGTGACTCGCGTGAGACGGATAAAGAAATTGCTAAACACTCTGCTTTGAAAATGTATATTGAAAGGTATCTAGATGTTAAAGTTGATAGAATTAGGTTATCTGGTGATAGAATTGCTAGTGATAAGGTACCTGGTGTTAGTAATGCTAGTGATAAGACTGTTAATTTGAGTATCGCTAATGAGAAGTCACGTATTATGAATGTCGATAAGGGTCAGTTAGCTAACAAGAACGTCGTTGATGATGAGTTGTTTGTCTGGCCATGGATGGTCATATTGGCTAACAATGTTACTAATTTTGACCCGAAAAGCGGAAAGTATGTTGGGAAGAATCATAAGAAAATTAAGGAGGAGCTGAACATGAAAGGGTTTCAGCCGATTAGAGTTACAACGCTGTGGAACCCTAGAGGACAAACACCCTTTGCCATTGTTGAATTTGGAAAAGAGTGGGATGGTTTTGACAATGCTATGAAGTTAGAGAGGAGCTTTCAGGCAGAGCACTGTGGTAAGAGGGATTACTTAGGTTTAAGGGAGCAGGAGCGAGGAGATAGACTATTTGGCTGGATGGCACGTCATGATGACTATAATTTAAAGGATATAGTTGGCAAACACCTGAAGGAAAATGTGGATTTGAAAACAGTTTCTGGAAAAGAAGCTGAGGACACAAGGAAAGCGAAGACGCTTGTCTTTGGTTTGGCCAATACCTTAAAGCAGAAGACTGATGAATTGGAACAGACAGCAAGCAAATATGATGAGGCTAATGCATTCCTAAGGAAAGTGATGGATCAAAAAGAGAAGATGCTTGAAGCTTTTAACGAGGAAATCAGCAAGATGCGGCAGGTTGAACGCGAGTATCAGGAGAAAGTATCGAAGGATCATGAAATAGCTAGGCGGGAACTGGAAGCTCGGAGGAATGAACTCAAGTCCCGTGAAAAGGATCTGCAGAAGCGTCAAGCAGATAATCTCAATGAGAGAAACAAGCTATATCTTGAGAAGAAAAATAAAGAAAAGGAGAAACTTCACAAGAAAATTCATGACCTGGAGAGAGGACTTGATGCAAAACAAGCATTGGAATTGGAGATAGAACGGCTGAAAGGAGCTTTCCAGGTAATGAATCACATTGGAGAGACTGATCTAGAAGAGAAGAAAAAACTGGAGGAAATCAAAATGGAGCTGCAGGAAAAAGAAGAGGAGTTGGAAGGCGTGGAAGATCTTCAACAGACACTGGTTGTTCAAGAGCGAAAAACTAATGACGAGTTGCAAGATGCCCGCAAAAAATTGATAAGTTGGATTGGATGCCCAAAGAAGGCTCCTCGAGCCATAATTTCTGTGAAAAGGATGGGTGAACTTGAGATTAAGCCATTTTTGGAAGCAGCCAAGAGAAAGTTTTCTGATGAAGTGAATGAGAAAAAAGCAACTAAAGCACAACTTCGCGAAAAATGGCAATTGAAAGCAATCGAGTGGTGCTCAAAGTGGGATGACTGTCTTAAAGATCCCAGCTGGCATCCGTTCAAAGTTGAGACTGATAAAGACGGGAAATCCATGGAAATTTTAGACGGAGAAGATGAAAAGCTAAAAAGTTTGAAGGATGAGTTCGGGGATGAGGTGCATGATGCAGTAGCTACAGCTCTGAAGGAGTTAAACGAGTACAACCCTAGTGGTAGGTACCCAGTACCGGAACTCTGGAATTTTAGGGAAGGAAGGAAAGCCTCGTTGAAGGAGGGTGTTTCCCATTTAATTAGGCAATGGAAATCAAATAAGGGAAAGAAAACTTATTGA

Protein sequence

>Msa0223010

MSKRSKHTHDSDYEYYESRYYEDLKDDYYKDKLKISDSRYRCPFCYNKDYYSLSELLRHASRILGDSRETDKEIAKHSALKMYIERYLDVKVDRIRLSGDRIASDKVPGVSNASDKTVNLSIANEKSRIMNVDKGQLANKNVVDDELFVWPWMVILANNVTNFDPKSGKYVGKNHKKIKEELNMKGFQPIRVTTLWNPRGQTPFAIVEFGKEWDGFDNAMKLERSFQAEHCGKRDYLGLREQERGDRLFGWMARHDDYNLKDIVGKHLKENVDLKTVSGKEAEDTRKAKTLVFGLANTLKQKTDELEQTASKYDEANAFLRKVMDQKEKMLEAFNEEISKMRQVEREYQEKVSKDHEIARRELEARRNELKSREKDLQKRQADNLNERNKLYLEKKNKEKEKLHKKIHDLERGLDAKQALELEIERLKGAFQVMNHIGETDLEEKKKLEEIKMELQEKEEELEGVEDLQQTLVVQERKTNDELQDARKKLISWIGCPKKAPRAIISVKRMGELEIKPFLEAAKRKFSDEVNEKKATKAQLREKWQLKAIEWCSKWDDCLKDPSWHPFKVETDKDGKSMEILDGEDEKLKSLKDEFGDEVHDAVATALKELNEYNPSGRYPVPELWNFREGRKASLKEGVSHLIRQWKSNKGKKTY*