AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0223010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223010 MtrunA17_Chr2g0328241 90.560 678 41 2 1 655 1 678 0.0 1162
Msa0223010 MtrunA17_Chr2g0328251 74.928 694 135 3 1 655 1 694 0.0 1001
Msa0223010 MtrunA17_Chr4g0024031 78.331 683 107 3 1 655 1 670 0.0 979
Msa0223010 MtrunA17_Chr2g0327251 78.179 582 106 2 74 655 8 568 0.0 846
Msa0223010 MtrunA17_Chr2g0328231 80.381 367 54 3 305 655 2 366 0.0 541
Msa0223010 MtrunA17_Chr3g0111661 37.722 676 334 13 10 650 13 636 2.41e-139 421
Msa0223010 MtrunA17_Chr4g0071151 76.046 263 47 3 397 655 3 253 2.21e-132 389
Msa0223010 MtrunA17_Chr5g0435301 36.484 677 347 17 16 653 487 1119 9.78e-125 396
Msa0223010 MtrunA17_Chr4g0074301 34.621 673 342 15 16 653 19 628 1.48e-105 333
Msa0223010 MtrunA17_Chr4g0070931 33.921 681 336 16 16 653 19 628 1.16e-103 328
Msa0223010 MtrunA17_Chr4g0001231 34.132 668 338 18 21 653 24 624 1.83e-103 328
Msa0223010 MtrunA17_Chr3g0111741 42.857 231 115 5 424 653 123 337 6.72e-45 164
Msa0223010 MtrunA17_Chr4g0071141 75.532 94 23 0 306 399 3 96 1.78e-36 132
Msa0223010 MtrunA17_Chr3g0111731 36.134 238 125 7 417 653 2 213 3.95e-28 113
Msa0223010 MtrunA17_Chr1g0176351 59.140 93 35 2 1 93 1 90 2.40e-27 110
Msa0223010 MtrunA17_Chr8g0389491 62.791 86 29 2 3 88 65 147 2.62e-25 104
Msa0223010 MtrunA17_Chr4g0074271 24.202 376 214 9 16 388 36 343 1.60e-22 101
Msa0223010 MtrunA17_Chr4g0074271 62.500 64 24 0 580 643 384 447 1.16e-18 89.4
Msa0223010 MtrunA17_Chr3g0111691 50.000 76 37 1 578 653 15 89 4.08e-17 77.4
Msa0223010 MtrunA17_Chr8g0356091 57.500 80 34 0 65 144 3 82 9.33e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223010 AT1G13790.2 45.747 529 242 7 145 646 216 726 8.51e-132 405
Msa0223010 AT1G13790.2 49.333 75 33 3 17 88 11 83 4.79e-11 66.6
Msa0223010 AT1G13790.1 45.747 529 242 7 145 646 216 726 8.51e-132 405
Msa0223010 AT1G13790.1 49.333 75 33 3 17 88 11 83 4.79e-11 66.6
Msa0223010 AT3G48670.2 33.630 675 357 14 16 653 24 644 2.02e-104 331
Msa0223010 AT3G48670.1 33.630 675 357 14 16 653 24 644 2.02e-104 331
Msa0223010 AT3G48670.3 33.630 675 357 14 16 653 24 644 2.02e-104 331
Msa0223010 AT3G12550.5 33.776 678 362 15 16 654 8 637 2.09e-103 328
Msa0223010 AT3G12550.4 33.726 679 362 16 16 654 8 638 2.24e-102 325
Msa0223010 AT3G12550.2 33.726 679 362 16 16 654 8 638 2.24e-102 325
Msa0223010 AT3G12550.1 33.726 679 362 16 16 654 8 638 2.24e-102 325
Msa0223010 AT1G15910.1 33.038 678 354 15 16 654 18 634 2.48e-99 317
Msa0223010 AT5G59390.2 36.585 533 289 10 141 644 27 539 6.42e-96 306
Msa0223010 AT5G59390.4 36.585 533 289 10 141 644 27 539 6.42e-96 306
Msa0223010 AT5G59390.3 36.585 533 289 10 141 644 27 539 6.42e-96 306
Msa0223010 AT4G00380.1 32.938 674 362 14 15 654 18 635 1.13e-95 308
Msa0223010 AT4G00380.3 32.938 674 362 14 15 654 18 635 1.13e-95 308
Msa0223010 AT5G59390.1 36.059 538 290 10 141 644 27 544 1.02e-94 303
Msa0223010 AT5G59390.5 36.059 538 290 10 141 644 27 544 1.02e-94 303
Msa0223010 AT4G00380.2 35.436 539 296 8 147 654 90 607 4.56e-93 300
Msa0223010 AT1G80790.1 34.164 682 341 16 15 654 19 634 2.58e-92 299
Msa0223010 AT1G80790.2 34.164 682 341 16 15 654 19 634 2.58e-92 299
Msa0223010 AT4G01180.1 36.162 542 267 12 148 644 32 539 1.03e-89 290
Msa0223010 AT3G12550.3 31.081 592 321 16 16 568 8 551 6.38e-70 238
Msa0223010 AT4G01780.1 33.333 441 210 8 215 653 111 469 1.07e-63 218
Msa0223010 AT1G80790.3 29.211 469 238 13 15 441 19 435 9.63e-46 169
Msa0223010 AT3G29375.3 43.333 210 97 4 445 653 38 226 9.10e-42 151
Msa0223010 AT3G29375.1 43.868 212 97 4 443 653 159 349 6.89e-40 150
Msa0223010 AT3G29375.2 39.231 130 59 3 443 571 36 146 1.43e-14 72.8
Msa0223010 AT2G16490.1 41.667 72 42 0 579 650 74 145 3.12e-13 68.9

Find 170 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGCCATTGTTGAATT+TGG 0.062386 2_1:-72427961 Msa0223010:CDS
TTCATCAGTCTTCTGCTTTA+AGG 0.090360 2_1:+72427675 None:intergenic
AGAGGGATTACTTAGGTTTA+AGG 0.106130 2_1:-72427870 Msa0223010:CDS
GAGACATGCTTCCAGAATTT+TGG 0.107290 2_1:-72428397 Msa0223010:CDS
ATTTCCATTGCCTAATTAAA+TGG 0.115767 2_1:+72424947 None:intergenic
GTGGATTTGAAAACAGTTTC+TGG 0.144084 2_1:-72427754 Msa0223010:CDS
GAAGTTAGAGAGGAGCTTTC+AGG 0.211680 2_1:-72427908 Msa0223010:CDS
TTAGAAAAGAGAGAGATAAT+AGG 0.229683 2_1:+72429222 None:intergenic
ATGTTAAAGTTGATAGAATT+AGG 0.264382 2_1:-72428302 Msa0223010:CDS
TAGGCAATGGAAATCAAATA+AGG 0.267301 2_1:-72424938 Msa0223010:CDS
TCATGATGACTATAATTTAA+AGG 0.274839 2_1:-72427806 Msa0223010:CDS
ATGGCTCGAGGAGCCTTCTT+TGG 0.276297 2_1:+72425609 None:intergenic
ATATCATGTAGGAGTACTTT+TGG 0.281384 2_1:-72424750 Msa0223010:three_prime_UTR
AAACTTATTGAGGCTTCATT+TGG 0.288030 2_1:-72424909 Msa0223010:exon
CCAACCATTGGCATTGTGAT+TGG 0.291418 2_1:+72424810 None:intergenic
GTTGATAGAATTAGGTTATC+TGG 0.300562 2_1:-72428294 Msa0223010:CDS
TAGAAAAGAGAGAGATAATA+GGG 0.311646 2_1:+72429223 None:intergenic
GAGCGAGGAGATAGACTATT+TGG 0.320283 2_1:-72427841 Msa0223010:CDS
GCAGGTTGAACGCGAGTATC+AGG 0.324478 2_1:-72427329 Msa0223010:CDS
AGTCTTCTGCTTTAAGGTAT+TGG 0.341440 2_1:+72427681 None:intergenic
ACGGCTGAAAGGAGCTTTCC+AGG 0.341751 2_1:-72426608 Msa0223010:CDS
GGAAATTTGAAATTGTCTAT+TGG 0.348064 2_1:-72424707 Msa0223010:three_prime_UTR
AAAGTTTGAAGGATGAGTTC+GGG 0.354846 2_1:-72425101 Msa0223010:CDS
GAAGAATCATAAGAAAATTA+AGG 0.355037 2_1:-72428052 Msa0223010:CDS
AAAACTGGAGGAAATCAAAA+TGG 0.356376 2_1:-72426545 Msa0223010:CDS
AAAGCAGAAGACTGATGAAT+TGG 0.362538 2_1:-72427671 Msa0223010:CDS
AGGGTGTTTCCCATTTAATT+AGG 0.364498 2_1:-72424957 Msa0223010:CDS
GAGGGATTACTTAGGTTTAA+GGG 0.365824 2_1:-72427869 Msa0223010:CDS
TCCCTAAAATTCCAGAGTTC+CGG 0.369716 2_1:+72425003 None:intergenic
AAAGCGAAGACGCTTGTCTT+TGG 0.372401 2_1:-72427709 Msa0223010:CDS
AGCTCAAAATCTCTGATTCC+AGG 0.381907 2_1:-72428473 Msa0223010:CDS
CACAGCGTTGTAACTCTAAT+CGG 0.385225 2_1:+72428003 None:intergenic
TGAAATAGCTAGGCGGGAAC+TGG 0.386220 2_1:-72427287 Msa0223010:CDS
CATTTCCAGAAAATTTCCTT+AGG 0.386875 2_1:-72429092 Msa0223010:five_prime_UTR
TGCAAAACAAGCATTGGAAT+TGG 0.388740 2_1:-72426638 Msa0223010:CDS
ACGCGAGTCACCCAAAATTC+TGG 0.391249 2_1:+72428386 None:intergenic
TGGCTCGAGGAGCCTTCTTT+GGG 0.396617 2_1:+72425610 None:intergenic
TTTCCTTGTTCGCAGTGGAT+TGG 0.397924 2_1:-72425636 Msa0223010:intron
AACTTTGAACGGATGCCAGC+TGG 0.400936 2_1:+72425413 None:intergenic
GCAAAGGGTGTTTGTCCTCT+AGG 0.401490 2_1:+72427976 None:intergenic
CTCCAATGTGATTCATTACC+TGG 0.402190 2_1:+72426590 None:intergenic
TTTGATCCATCACTTTCCTT+AGG 0.403042 2_1:+72427611 None:intergenic
TTCATCAGAAAACTTTCTCT+TGG 0.404556 2_1:+72425533 None:intergenic
ATTCTAGCTGTAACTGACTT+TGG 0.405113 2_1:-72424839 Msa0223010:three_prime_UTR
TTTCCATTGCCTAATTAAAT+GGG 0.407148 2_1:+72424948 None:intergenic
CAAAGGGTGTTTGTCCTCTA+GGG 0.435599 2_1:+72427977 None:intergenic
GAAGACGCTTGTCTTTGGTT+TGG 0.437340 2_1:-72427704 Msa0223010:CDS
ATCAAAACATACTCATGATT+CGG 0.438153 2_1:-72428556 Msa0223010:CDS
AGGAGGAGCTGAACATGAAA+GGG 0.453703 2_1:-72428032 Msa0223010:CDS
AAAAGTTTGAAGGATGAGTT+CGG 0.454559 2_1:-72425102 Msa0223010:CDS
TTGCATCAAGTCCTCTCTCC+AGG 0.454987 2_1:+72426656 None:intergenic
TCCAAATTCAACAATGGCAA+AGG 0.455840 2_1:+72427960 None:intergenic
GGAAATCAAAATGGAGCTGC+AGG 0.455953 2_1:-72426536 Msa0223010:CDS
TATAATTTAAAGGATATAGT+TGG 0.456368 2_1:-72427796 Msa0223010:CDS
TTACTTAGGTTTAAGGGAGC+AGG 0.460984 2_1:-72427863 Msa0223010:CDS
AAATTCCAGAGTTCCGGTAC+TGG 0.463412 2_1:+72425009 None:intergenic
AACTTATTGAGGCTTCATTT+GGG 0.464471 2_1:-72424908 Msa0223010:exon
ACGTATTATGAATGTCGATA+AGG 0.465602 2_1:-72428187 Msa0223010:CDS
CCAAATTCAACAATGGCAAA+GGG 0.469750 2_1:+72427961 None:intergenic
TAGATATTACGAAGACTTGA+AGG 0.470004 2_1:-72428514 Msa0223010:CDS
AGAAGAGGAGTTGGAAGGCG+TGG 0.472369 2_1:-72426509 Msa0223010:CDS
GACACTAGAAAATGATGAAA+CGG 0.472967 2_1:+72429181 None:intergenic
CTGGCCATGGATGGTCATAT+TGG 0.473776 2_1:-72428121 Msa0223010:CDS
AGGCAGAGCACTGTGGTAAG+AGG 0.475875 2_1:-72427888 Msa0223010:CDS
GAGCCATAATTTCTGTGAAA+AGG 0.480154 2_1:-72425593 Msa0223010:CDS
CATAATTTCTGTGAAAAGGA+TGG 0.481577 2_1:-72425589 Msa0223010:CDS
ATGAGTTGTTTGTCTGGCCA+TGG 0.481884 2_1:-72428134 Msa0223010:CDS
AGGCAATGGAAATCAAATAA+GGG 0.482017 2_1:-72424937 Msa0223010:CDS
AGATTTGAACGCGGAATCAA+CGG 0.490502 2_1:+72429013 None:intergenic
TTGATGATGAGTTGTTTGTC+TGG 0.490771 2_1:-72428140 Msa0223010:CDS
CGTATTATGAATGTCGATAA+GGG 0.494169 2_1:-72428186 Msa0223010:CDS
TTGAATGTTGCAGAAAGAAA+AGG 0.497168 2_1:-72426704 Msa0223010:intron
GAAGGATGAGTTCGGGGATG+AGG 0.499124 2_1:-72425094 Msa0223010:CDS
AATTATGGTGTTACCTTGTG+CGG 0.501085 2_1:+72428961 None:intergenic
TGAACTCAAGTCCCGTGAAA+AGG 0.503695 2_1:-72427251 Msa0223010:CDS
CGAAAAGCGGAAAGTATGTT+GGG 0.505354 2_1:-72428074 Msa0223010:CDS
GCAAAACGGACAGCGATACC+TGG 0.507749 2_1:+72428455 None:intergenic
ATTTCCAGAAAATTTCCTTA+GGG 0.509069 2_1:-72429091 Msa0223010:five_prime_UTR
CTTTGAAAATGTATATTGAA+AGG 0.510087 2_1:-72428332 Msa0223010:CDS
TTTCCCATTTAATTAGGCAA+TGG 0.511049 2_1:-72424951 Msa0223010:CDS
CCGAAAAGCGGAAAGTATGT+TGG 0.511071 2_1:-72428075 Msa0223010:CDS
CAGAGAAAATAAACGTGACC+TGG 0.511365 2_1:+72429341 None:intergenic
GGTACCCAGTACCGGAACTC+TGG 0.513974 2_1:-72425014 Msa0223010:CDS
AAGGGAAAGAAAACTTATTG+AGG 0.514142 2_1:-72424919 Msa0223010:exon
GGATCATGAAATAGCTAGGC+GGG 0.517645 2_1:-72427293 Msa0223010:CDS
TTATCAGTCTCAACTTTGAA+CGG 0.522646 2_1:+72425402 None:intergenic
AAGGAGGAGCTGAACATGAA+AGG 0.522988 2_1:-72428033 Msa0223010:CDS
ACTTGATGCAAAACAAGCAT+TGG 0.525557 2_1:-72426644 Msa0223010:CDS
TAATCCTTGTTGTAGCAAAA+CGG 0.536850 2_1:+72428441 None:intergenic
CGAAGGATCATGAAATAGCT+AGG 0.538005 2_1:-72427297 Msa0223010:CDS
TTTGGGTGACTCGCGTGAGA+CGG 0.539435 2_1:-72428379 Msa0223010:CDS
ACTTTGAACGGATGCCAGCT+GGG 0.546027 2_1:+72425414 None:intergenic
AAAATAAACGTGACCTGGGT+GGG 0.546156 2_1:+72429346 None:intergenic
TGCATTCCTAAGGAAAGTGA+TGG 0.547893 2_1:-72427617 Msa0223010:CDS
TGATAGAATTGCTAGTGATA+AGG 0.548910 2_1:-72428271 Msa0223010:CDS
TGTGGTAAGAGGGATTACTT+AGG 0.550144 2_1:-72427877 Msa0223010:CDS
AGAAATCAGCAAGATGCGGC+AGG 0.552419 2_1:-72427347 Msa0223010:CDS
AGGAAGGAAAGCCTCGTTGA+AGG 0.554478 2_1:-72424980 Msa0223010:CDS
GGCAGAGCACTGTGGTAAGA+GGG 0.555245 2_1:-72427887 Msa0223010:CDS
TAGTGGTAGGTACCCAGTAC+CGG 0.555492 2_1:-72425022 Msa0223010:CDS
TTCACAGAAATTATGGCTCG+AGG 0.555555 2_1:+72425597 None:intergenic
GTGGATTGGATGCCCAAAGA+AGG 0.556146 2_1:-72425622 Msa0223010:CDS
AATAATTACTAATATCATGT+AGG 0.556605 2_1:-72424761 Msa0223010:three_prime_UTR
TGCAGTAGCTACAGCTCTGA+AGG 0.557138 2_1:-72425064 Msa0223010:CDS
GGTACTGGGTACCTACCACT+AGG 0.560561 2_1:+72425024 None:intergenic
AGATAGACTATTTGGCTGGA+TGG 0.561061 2_1:-72427833 Msa0223010:CDS
GGTTCAAACTTAGAAACGAG+TGG 0.562727 2_1:-72424728 Msa0223010:three_prime_UTR
ATTATGGTGTTACCTTGTGC+GGG 0.563111 2_1:+72428962 None:intergenic
GAAGTATTAACACCAACCAT+TGG 0.572339 2_1:+72424798 None:intergenic
ATGAAGAATACGAAACCCTA+AGG 0.572830 2_1:+72429076 None:intergenic
GAAAAGAAGCTGAGGACACA+AGG 0.574290 2_1:-72427732 Msa0223010:CDS
ATAGAATTAGACTTAAATGC+AGG 0.574755 2_1:-72424875 Msa0223010:three_prime_UTR
ATGAGGCTAATGCATTCCTA+AGG 0.574769 2_1:-72427627 Msa0223010:CDS
GTTGTTTGTCTGGCCATGGA+TGG 0.574875 2_1:-72428130 Msa0223010:CDS
ATAATTTCTGTGAAAAGGAT+GGG 0.575703 2_1:-72425588 Msa0223010:CDS
AATTCCAGAGTTCCGGTACT+GGG 0.576644 2_1:+72425010 None:intergenic
CAAACACCTGAAGGAAAATG+TGG 0.582813 2_1:-72427773 Msa0223010:CDS
CAATCGAGTGGTGCTCAAAG+TGG 0.583300 2_1:-72425455 Msa0223010:CDS
CTAGGCGGGAACTGGAAGCT+CGG 0.585718 2_1:-72427279 Msa0223010:CDS
TATAGTTGGCAAACACCTGA+AGG 0.588147 2_1:-72427782 Msa0223010:CDS
AAGTTGAGACTGATAAAGAC+GGG 0.588269 2_1:-72425395 Msa0223010:CDS
AATCGAGTGGTGCTCAAAGT+GGG 0.588592 2_1:-72425454 Msa0223010:CDS
TTGAGTAATCTTCCCGCACA+AGG 0.590110 2_1:-72428974 Msa0223010:intron
AAAATTCATGACCTGGAGAG+AGG 0.591924 2_1:-72426667 Msa0223010:CDS
CCAATCACAATGCCAATGGT+TGG 0.592253 2_1:-72424810 Msa0223010:three_prime_UTR
TTAGCCAATATGACCATCCA+TGG 0.593136 2_1:+72428117 None:intergenic
GAGGAGATAGACTATTTGGC+TGG 0.593752 2_1:-72427837 Msa0223010:CDS
TTATTGAGGCTTCATTTGGG+TGG 0.594676 2_1:-72424905 Msa0223010:exon
CATTGGAATTGGAGATAGAA+CGG 0.595258 2_1:-72426627 Msa0223010:CDS
GAAAATAAACGTGACCTGGG+TGG 0.601475 2_1:+72429345 None:intergenic
CTTGAAGGATGATTACTACA+AGG 0.601753 2_1:-72428499 Msa0223010:CDS
TTCCAGGTAATGAATCACAT+TGG 0.602846 2_1:-72426592 Msa0223010:CDS
TTGGAGATAGAACGGCTGAA+AGG 0.603749 2_1:-72426619 Msa0223010:CDS
TGTTGAATTTGGAAAAGAGT+GGG 0.604730 2_1:-72427950 Msa0223010:CDS
ACTGTCTTAAAGATCCCAGC+TGG 0.606195 2_1:-72425428 Msa0223010:CDS
GGTTTAAGGGAGCAGGAGCG+AGG 0.606961 2_1:-72427856 Msa0223010:CDS
AAAGTTGAGACTGATAAAGA+CGG 0.607016 2_1:-72425396 Msa0223010:CDS
ATTGCTAGTGATAAGGTACC+TGG 0.607340 2_1:-72428264 Msa0223010:CDS
TCACAAGAAAATTCATGACC+TGG 0.607531 2_1:-72426674 Msa0223010:CDS
AAGGAAAGCCTCGTTGAAGG+AGG 0.608173 2_1:-72424977 Msa0223010:CDS
TGATAAAGACGGGAAATCCA+TGG 0.608822 2_1:-72425385 Msa0223010:intron
CAATCCAATCACAATGCCAA+TGG 0.614220 2_1:-72424814 Msa0223010:three_prime_UTR
TTGTTGAATTTGGAAAAGAG+TGG 0.617280 2_1:-72427951 Msa0223010:CDS
AGGAAAGCCTCGTTGAAGGA+GGG 0.621359 2_1:-72424976 Msa0223010:CDS
GGAAGATCTTCAACAGACAC+TGG 0.622918 2_1:-72426488 Msa0223010:CDS
GGGTGGGTACTTCTTCACTA+AGG 0.625617 2_1:+72429362 None:intergenic
ACAATGCTATGAAGTTAGAG+AGG 0.632206 2_1:-72427918 Msa0223010:CDS
GGCAATTGAAAGCAATCGAG+TGG 0.635070 2_1:-72425467 Msa0223010:CDS
GTACTGGGTACCTACCACTA+GGG 0.635409 2_1:+72425025 None:intergenic
GTATCAGGAGAAAGTATCGA+AGG 0.637654 2_1:-72427314 Msa0223010:CDS
GAATTTGGAAAAGAGTGGGA+TGG 0.639455 2_1:-72427946 Msa0223010:CDS
TCACTAGCATTACTAACACC+AGG 0.643930 2_1:+72428246 None:intergenic
ACGAGTACAACCCTAGTGGT+AGG 0.644559 2_1:-72425035 Msa0223010:CDS
AAGTTTGAAGGATGAGTTCG+GGG 0.648246 2_1:-72425100 Msa0223010:CDS
GACAGCAAGCAAATATGATG+AGG 0.653895 2_1:-72427644 Msa0223010:CDS
AGAGAAAATAAACGTGACCT+GGG 0.656489 2_1:+72429342 None:intergenic
AGTTTCTGGAAAAGAAGCTG+AGG 0.656933 2_1:-72427740 Msa0223010:CDS
GAATCAACGGCGAATACCAG+AGG 0.663429 2_1:+72429026 None:intergenic
GAATCATAAGAAAATTAAGG+AGG 0.665895 2_1:-72428049 Msa0223010:CDS
CATTAGAAATCAGCAAGATG+CGG 0.680318 2_1:-72427351 Msa0223010:intron
TAGTGAAGAAGTACCCACCC+AGG 0.687341 2_1:-72429359 Msa0223010:five_prime_UTR
GGCGGGAACTGGAAGCTCGG+AGG 0.688311 2_1:-72427276 Msa0223010:CDS
ACTAATTATCATATGACACG+TGG 0.688906 2_1:+72429445 None:intergenic
CGATTAGAGTTACAACGCTG+TGG 0.699428 2_1:-72428002 Msa0223010:CDS
ACAACGCTGTGGAACCCTAG+AGG 0.703885 2_1:-72427991 Msa0223010:CDS
AGGATCATGAAATAGCTAGG+CGG 0.734039 2_1:-72427294 Msa0223010:CDS
GGAAACACCCTCCTTCAACG+AGG 0.744953 2_1:+72424969 None:intergenic
TTAAACGAGTACAACCCTAG+TGG 0.763773 2_1:-72425039 Msa0223010:CDS
AGCTTTCAGGCAGAGCACTG+TGG 0.768741 2_1:-72427895 Msa0223010:CDS
AAGATGAAGAGATTTGAACG+CGG 0.778312 2_1:+72429004 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTTTGATATTTCA+TGG - chr2_1:72426769-72426788 Msa0223010:intron 10.0%
!! TAAGTTATTAAAAAATAAGA+TGG + chr2_1:72427258-72427277 None:intergenic 10.0%
!!! TATTTTTTAATAACTTATGA+CGG - chr2_1:72427261-72427280 Msa0223010:CDS 10.0%
!!! TGTTTTTTTTTTTGAAGAAT+TGG + chr2_1:72424903-72424922 None:intergenic 15.0%
!! TATAATTTAAAGGATATAGT+TGG - chr2_1:72426372-72426391 Msa0223010:intron 15.0%
!! TATTAATATATCTATCTTCT+CGG - chr2_1:72426692-72426711 Msa0223010:CDS 15.0%
!!! AAGAAAAATGTAATGTATTT+TGG - chr2_1:72426996-72427015 Msa0223010:intron 15.0%
!!! TAAATTTGCTTCTTTAAAAA+TGG - chr2_1:72427154-72427173 Msa0223010:intron 15.0%
!! TATTAAAAAATAAGATGGAT+TGG + chr2_1:72427253-72427272 None:intergenic 15.0%
!!! ATGTTAATATTAATGTCTTT+TGG - chr2_1:72427800-72427819 Msa0223010:CDS 15.0%
!! AACTTTAACAATATTAATTC+TGG + chr2_1:72428819-72428838 None:intergenic 15.0%
!! AATAATTACTAATATCATGT+AGG - chr2_1:72429407-72429426 Msa0223010:five_prime_UTR 15.0%
!!! AAAAGAAAATTTTCTGGTTT+TGG + chr2_1:72425030-72425049 None:intergenic 20.0%
!! AATAGAAGTTATGGTAAAAA+GGG + chr2_1:72425283-72425302 None:intergenic 20.0%
!!! TTTTGATTGAATAGAAGTTA+TGG + chr2_1:72425292-72425311 None:intergenic 20.0%
!!! CTTTGAAAATGTATATTGAA+AGG - chr2_1:72425836-72425855 Msa0223010:intron 20.0%
!!! ATGTTAAAGTTGATAGAATT+AGG - chr2_1:72425866-72425885 Msa0223010:intron 20.0%
!! GAAGAATCATAAGAAAATTA+AGG - chr2_1:72426116-72426135 Msa0223010:intron 20.0%
!! TCATGATGACTATAATTTAA+AGG - chr2_1:72426362-72426381 Msa0223010:intron 20.0%
!! TGAACTGTTCTAATTAATAT+TGG - chr2_1:72426628-72426647 Msa0223010:CDS 20.0%
!! TAATAAAAACCAGAATGTTT+CGG + chr2_1:72426677-72426696 None:intergenic 20.0%
!! AATTAAGAACTGTAGATAAA+AGG + chr2_1:72427404-72427423 None:intergenic 20.0%
!!! ATACACTTATCAATTTTTTG+CGG + chr2_1:72427746-72427765 None:intergenic 20.0%
!!! ACTTTGTAAAAGATTAGTTA+TGG + chr2_1:72427872-72427891 None:intergenic 20.0%
!!! TGAATTAAAATCATCACTTT+TGG + chr2_1:72428298-72428317 None:intergenic 20.0%
!!! TCACATTTTAGTTGAAAATT+TGG - chr2_1:72428325-72428344 Msa0223010:CDS 20.0%
!! TTCATAATAATTACAAAGCA+TGG - chr2_1:72428883-72428902 Msa0223010:intron 20.0%
!! TCATAATAATTACAAAGCAT+GGG - chr2_1:72428884-72428903 Msa0223010:intron 20.0%
!! ATGTAACATATATTAGATCA+CGG + chr2_1:72429005-72429024 None:intergenic 20.0%
!! ATACGTTGAAAAATTATCAA+AGG - chr2_1:72429490-72429509 Msa0223010:five_prime_UTR 20.0%
!!! TTTTTTTGAAGAATTGGTGA+AGG + chr2_1:72424897-72424916 None:intergenic 25.0%
!! GATAATAGGGTTTTTGAATT+TGG + chr2_1:72424935-72424954 None:intergenic 25.0%
! TAGAAAAGAGAGAGATAATA+GGG + chr2_1:72424948-72424967 None:intergenic 25.0%
! TTAGAAAAGAGAGAGATAAT+AGG + chr2_1:72424949-72424968 None:intergenic 25.0%
!! TGTGTGAAAAGAAAATTTTC+TGG + chr2_1:72425036-72425055 None:intergenic 25.0%
! ATTTCCAGAAAATTTCCTTA+GGG - chr2_1:72425077-72425096 Msa0223010:CDS 25.0%
! ATAGAAGTTATGGTAAAAAG+GGG + chr2_1:72425282-72425301 None:intergenic 25.0%
! GAATAGAAGTTATGGTAAAA+AGG + chr2_1:72425284-72425303 None:intergenic 25.0%
!! AGTTTTTACTGTATTTTCCA+TGG - chr2_1:72425499-72425518 Msa0223010:CDS 25.0%
!!! ATGAGTATGTTTTGATCTTT+TGG + chr2_1:72425608-72425627 None:intergenic 25.0%
! ATCAAAACATACTCATGATT+CGG - chr2_1:72425612-72425631 Msa0223010:CDS 25.0%
! GAATCATAAGAAAATTAAGG+AGG - chr2_1:72426119-72426138 Msa0223010:intron 25.0%
! AATATTGGTATTCTGTTTCA+TGG - chr2_1:72426643-72426662 Msa0223010:CDS 25.0%
! TGATGAAAAAATGATGTCTT+TGG - chr2_1:72427348-72427367 Msa0223010:CDS 25.0%
!!! TTCAGTTTTGAGAACTTTTT+CGG - chr2_1:72427441-72427460 Msa0223010:intron 25.0%
!!! TACACTTATCAATTTTTTGC+GGG + chr2_1:72427745-72427764 None:intergenic 25.0%
!! AGTTATGGAAGACATTTTAA+AGG + chr2_1:72427857-72427876 None:intergenic 25.0%
!! AACTAATCTTTTACAAAGTC+AGG - chr2_1:72427873-72427892 Msa0223010:CDS 25.0%
!! ATTTCTGCTTAAGTTTTACA+AGG + chr2_1:72427920-72427939 None:intergenic 25.0%
!! GAAATCTTATTTATCTTGCT+TGG - chr2_1:72428034-72428053 Msa0223010:CDS 25.0%
!!! AAACACCGTATATTTTGAAT+TGG + chr2_1:72428100-72428119 None:intergenic 25.0%
! GTTGAAAAATTGTAATTCCT+TGG + chr2_1:72428141-72428160 None:intergenic 25.0%
!!! ACTTATTTTGCTTGAAGTTT+GGG + chr2_1:72428447-72428466 None:intergenic 25.0%
!!! AACTTATTTTGCTTGAAGTT+TGG + chr2_1:72428448-72428467 None:intergenic 25.0%
! ATAATTTCTGTGAAAAGGAT+GGG - chr2_1:72428580-72428599 Msa0223010:intron 25.0%
! TGAAAAGCTAAAAAGTTTGA+AGG - chr2_1:72429056-72429075 Msa0223010:five_prime_UTR 25.0%
! TTTCCATTGCCTAATTAAAT+GGG + chr2_1:72429223-72429242 None:intergenic 25.0%
! ATTTCCATTGCCTAATTAAA+TGG + chr2_1:72429224-72429243 None:intergenic 25.0%
! ATAGAATTAGACTTAAATGC+AGG - chr2_1:72429293-72429312 Msa0223010:five_prime_UTR 25.0%
!! GGAAATTTGAAATTGTCTAT+TGG - chr2_1:72429461-72429480 Msa0223010:five_prime_UTR 25.0%
ACTAATTATCATATGACACG+TGG + chr2_1:72424726-72424745 None:intergenic 30.0%
GACACTAGAAAATGATGAAA+CGG + chr2_1:72424990-72425009 None:intergenic 30.0%
!! CTAAGGAAATTTTCTGGAAA+TGG + chr2_1:72425078-72425097 None:intergenic 30.0%
CATTTCCAGAAAATTTCCTT+AGG - chr2_1:72425076-72425095 Msa0223010:CDS 30.0%
CGATTAACCAGTAGAAATTA+TGG + chr2_1:72425225-72425244 None:intergenic 30.0%
TACATTCAGTGATTAAATCG+AGG + chr2_1:72425371-72425390 None:intergenic 30.0%
CAGTAACTGAAAATAAACCA+TGG + chr2_1:72425519-72425538 None:intergenic 30.0%
TAGATATTACGAAGACTTGA+AGG - chr2_1:72425654-72425673 Msa0223010:intron 30.0%
! TAATCCTTGTTGTAGCAAAA+CGG + chr2_1:72425730-72425749 None:intergenic 30.0%
! GTTGATAGAATTAGGTTATC+TGG - chr2_1:72425874-72425893 Msa0223010:intron 30.0%
TGATAGAATTGCTAGTGATA+AGG - chr2_1:72425897-72425916 Msa0223010:intron 30.0%
ACGTATTATGAATGTCGATA+AGG - chr2_1:72425981-72426000 Msa0223010:intron 30.0%
CGTATTATGAATGTCGATAA+GGG - chr2_1:72425982-72426001 Msa0223010:intron 30.0%
! CTCTTTTCCAAATTCAACAA+TGG + chr2_1:72426217-72426236 None:intergenic 30.0%
TTGTTGAATTTGGAAAAGAG+TGG - chr2_1:72426217-72426236 Msa0223010:intron 30.0%
TGTTGAATTTGGAAAAGAGT+GGG - chr2_1:72426218-72426237 Msa0223010:intron 30.0%
! CTTATCATTCTGTTGCATTT+TGG - chr2_1:72426720-72426739 Msa0223010:intron 30.0%
!!! ATTTTGGCTCTGTGAATTTA+TGG - chr2_1:72427012-72427031 Msa0223010:intron 30.0%
!!! TTGAACACACTTTTTCTGAT+AGG - chr2_1:72427076-72427095 Msa0223010:intron 30.0%
!! CTAACAACACTTTTTGTGAT+TGG + chr2_1:72427181-72427200 None:intergenic 30.0%
ATTTGACACAAAAGACCAAA+TGG + chr2_1:72427222-72427241 None:intergenic 30.0%
!! TTGTTGTTTACAGAATGAGA+TGG - chr2_1:72427303-72427322 Msa0223010:CDS 30.0%
TTGAATGTTGCAGAAAGAAA+AGG - chr2_1:72427464-72427483 Msa0223010:intron 30.0%
TCTAGAAGAGAAGAAAAAAC+TGG - chr2_1:72427608-72427627 Msa0223010:CDS 30.0%
AAAACTGGAGGAAATCAAAA+TGG - chr2_1:72427623-72427642 Msa0223010:CDS 30.0%
! ATCTTTTACAAAGTCAGGAT+AGG - chr2_1:72427878-72427897 Msa0223010:CDS 30.0%
GATTTGAATGTTTGCAAAAC+AGG + chr2_1:72428006-72428025 None:intergenic 30.0%
TATTTATCTTGCTTGGAAGA+CGG - chr2_1:72428041-72428060 Msa0223010:CDS 30.0%
TTGTTCACGTGAATTTACAA+CGG - chr2_1:72428074-72428093 Msa0223010:CDS 30.0%
AACGGCCAATTCAAAATATA+CGG - chr2_1:72428092-72428111 Msa0223010:CDS 30.0%
AACCTTAGTTTCTATATCCA+AGG - chr2_1:72428121-72428140 Msa0223010:CDS 30.0%
TTCCTTGGATATAGAAACTA+AGG + chr2_1:72428126-72428145 None:intergenic 30.0%
GATTCACATAATAGGATGAT+AGG + chr2_1:72428163-72428182 None:intergenic 30.0%
ATCCTATTATGTGAATCATG+TGG - chr2_1:72428166-72428185 Msa0223010:CDS 30.0%
AACCACATGATTCACATAAT+AGG + chr2_1:72428171-72428190 None:intergenic 30.0%
TGAATTAAAACCATCACCTT+TGG + chr2_1:72428234-72428253 None:intergenic 30.0%
TTTGTCATATTGCTTCATAC+TGG - chr2_1:72428399-72428418 Msa0223010:CDS 30.0%
ACTTCAAGCAAAATAAGTTC+AGG - chr2_1:72428449-72428468 Msa0223010:CDS 30.0%
CAAACCAAACAATGAAATCA+TGG + chr2_1:72428499-72428518 None:intergenic 30.0%
! CATCCTTTTCACAGAAATTA+TGG + chr2_1:72428581-72428600 None:intergenic 30.0%
CATAATTTCTGTGAAAAGGA+TGG - chr2_1:72428579-72428598 Msa0223010:intron 30.0%
!! ACTTGAGATTAAGCCATTTT+TGG - chr2_1:72428606-72428625 Msa0223010:intron 30.0%
TTCATCAGAAAACTTTCTCT+TGG + chr2_1:72428638-72428657 None:intergenic 30.0%
TTATCAGTCTCAACTTTGAA+CGG + chr2_1:72428769-72428788 None:intergenic 30.0%
AAAGTTGAGACTGATAAAGA+CGG - chr2_1:72428772-72428791 Msa0223010:intron 30.0%
ATATGTTACATATATCACGC+AGG - chr2_1:72429014-72429033 Msa0223010:five_prime_UTR 30.0%
AAAAGTTTGAAGGATGAGTT+CGG - chr2_1:72429066-72429085 Msa0223010:five_prime_UTR 30.0%
TTTCCCATTTAATTAGGCAA+TGG - chr2_1:72429217-72429236 Msa0223010:five_prime_UTR 30.0%
TAGGCAATGGAAATCAAATA+AGG - chr2_1:72429230-72429249 Msa0223010:five_prime_UTR 30.0%
AGGCAATGGAAATCAAATAA+GGG - chr2_1:72429231-72429250 Msa0223010:five_prime_UTR 30.0%
AAGGGAAAGAAAACTTATTG+AGG - chr2_1:72429249-72429268 Msa0223010:five_prime_UTR 30.0%
AAACTTATTGAGGCTTCATT+TGG - chr2_1:72429259-72429278 Msa0223010:five_prime_UTR 30.0%
AACTTATTGAGGCTTCATTT+GGG - chr2_1:72429260-72429279 Msa0223010:five_prime_UTR 30.0%
!!! ATATCATGTAGGAGTACTTT+TGG - chr2_1:72429418-72429437 Msa0223010:five_prime_UTR 30.0%
!!! TATCATGTAGGAGTACTTTT+GGG - chr2_1:72429419-72429438 Msa0223010:five_prime_UTR 30.0%
AGAGAAAATAAACGTGACCT+GGG + chr2_1:72424829-72424848 None:intergenic 35.0%
!!! GGATTTGTTGTTGAGTTTTC+AGG + chr2_1:72424876-72424895 None:intergenic 35.0%
!! AGGGTTTTTGAATTTGGTGA+AGG + chr2_1:72424929-72424948 None:intergenic 35.0%
! GAAACCCTAAGGAAATTTTC+TGG + chr2_1:72425084-72425103 None:intergenic 35.0%
ATGAAGAATACGAAACCCTA+AGG + chr2_1:72425095-72425114 None:intergenic 35.0%
AAGATGAAGAGATTTGAACG+CGG + chr2_1:72425167-72425186 None:intergenic 35.0%
!! AATTATGGTGTTACCTTGTG+CGG + chr2_1:72425210-72425229 None:intergenic 35.0%
GGTAACACCATAATTTCTAC+TGG - chr2_1:72425215-72425234 Msa0223010:intron 35.0%
TGTTTGTGTAGCTCTTTCTT+TGG - chr2_1:72425551-72425570 Msa0223010:CDS 35.0%
CTTGAAGGATGATTACTACA+AGG - chr2_1:72425669-72425688 Msa0223010:intron 35.0%
! AGACATGCTTCCAGAATTTT+GGG - chr2_1:72425772-72425791 Msa0223010:intron 35.0%
!! TTGATGATGAGTTGTTTGTC+TGG - chr2_1:72426028-72426047 Msa0223010:intron 35.0%
!! ACTAATTTTGACCCGAAAAG+CGG - chr2_1:72426081-72426100 Msa0223010:intron 35.0%
CCAAATTCAACAATGGCAAA+GGG + chr2_1:72426210-72426229 None:intergenic 35.0%
TCCAAATTCAACAATGGCAA+AGG + chr2_1:72426211-72426230 None:intergenic 35.0%
ACAATGCTATGAAGTTAGAG+AGG - chr2_1:72426250-72426269 Msa0223010:intron 35.0%
AGAGGGATTACTTAGGTTTA+AGG - chr2_1:72426298-72426317 Msa0223010:intron 35.0%
GAGGGATTACTTAGGTTTAA+GGG - chr2_1:72426299-72426318 Msa0223010:intron 35.0%
! TCAAATCCACATTTTCCTTC+AGG + chr2_1:72426404-72426423 None:intergenic 35.0%
GTGGATTTGAAAACAGTTTC+TGG - chr2_1:72426414-72426433 Msa0223010:intron 35.0%
!! AGTCTTCTGCTTTAAGGTAT+TGG + chr2_1:72426490-72426509 None:intergenic 35.0%
TTCATCAGTCTTCTGCTTTA+AGG + chr2_1:72426496-72426515 None:intergenic 35.0%
AAAGCAGAAGACTGATGAAT+TGG - chr2_1:72426497-72426516 Msa0223010:CDS 35.0%
TTTGATCCATCACTTTCCTT+AGG + chr2_1:72426560-72426579 None:intergenic 35.0%
! ATGCTTGAAGCTTTTAACGA+GGG - chr2_1:72426588-72426607 Msa0223010:CDS 35.0%
CATTAGAAATCAGCAAGATG+CGG - chr2_1:72426817-72426836 Msa0223010:intron 35.0%
! GAAAAAGTGTGTTCAAGAGA+GGG + chr2_1:72427072-72427091 None:intergenic 35.0%
! AGAAAAAGTGTGTTCAAGAG+AGG + chr2_1:72427073-72427092 None:intergenic 35.0%
TGTTAGCATTCCTTACTCTA+TGG - chr2_1:72427195-72427214 Msa0223010:CDS 35.0%
TCACAAGAAAATTCATGACC+TGG - chr2_1:72427494-72427513 Msa0223010:intron 35.0%
ACTTGATGCAAAACAAGCAT+TGG - chr2_1:72427524-72427543 Msa0223010:intron 35.0%
!! TGCAAAACAAGCATTGGAAT+TGG - chr2_1:72427530-72427549 Msa0223010:intron 35.0%
CATTGGAATTGGAGATAGAA+CGG - chr2_1:72427541-72427560 Msa0223010:intron 35.0%
TTCCAGGTAATGAATCACAT+TGG - chr2_1:72427576-72427595 Msa0223010:intron 35.0%
AGAAGAGAAGAAAAAACTGG+AGG - chr2_1:72427611-72427630 Msa0223010:CDS 35.0%
TTGGCTATCAACTCATCTAA+TGG - chr2_1:72427819-72427838 Msa0223010:CDS 35.0%
GTTGAAAATTTGGTAGAGTC+AGG - chr2_1:72428335-72428354 Msa0223010:CDS 35.0%
CGAACAAGGAAAAGAATTAC+TGG + chr2_1:72428524-72428543 None:intergenic 35.0%
GAGCCATAATTTCTGTGAAA+AGG - chr2_1:72428575-72428594 Msa0223010:intron 35.0%
AAGTTGAGACTGATAAAGAC+GGG - chr2_1:72428773-72428792 Msa0223010:intron 35.0%
!! ATTCTGGAGTTATTGTACCA+TGG + chr2_1:72428803-72428822 None:intergenic 35.0%
! ATCACGCAGGAAATTTTAGA+CGG - chr2_1:72429027-72429046 Msa0223010:five_prime_UTR 35.0%
AAAGTTTGAAGGATGAGTTC+GGG - chr2_1:72429067-72429086 Msa0223010:five_prime_UTR 35.0%
! AGGGTGTTTCCCATTTAATT+AGG - chr2_1:72429211-72429230 Msa0223010:five_prime_UTR 35.0%
! ATTCTAGCTGTAACTGACTT+TGG - chr2_1:72429329-72429348 Msa0223010:five_prime_UTR 35.0%
! GAAGTATTAACACCAACCAT+TGG + chr2_1:72429373-72429392 None:intergenic 35.0%
AAAATAAACGTGACCTGGGT+GGG + chr2_1:72424825-72424844 None:intergenic 40.0%
CAGAGAAAATAAACGTGACC+TGG + chr2_1:72424830-72424849 None:intergenic 40.0%
!!! TTCTCTCGTTTTTTCTCCTC+TGG - chr2_1:72425126-72425145 Msa0223010:CDS 40.0%
AGATTTGAACGCGGAATCAA+CGG + chr2_1:72425158-72425177 None:intergenic 40.0%
!! ATTATGGTGTTACCTTGTGC+GGG + chr2_1:72425209-72425228 None:intergenic 40.0%
AGCTCAAAATCTCTGATTCC+AGG - chr2_1:72425695-72425714 Msa0223010:intron 40.0%
! GAGACATGCTTCCAGAATTT+TGG - chr2_1:72425771-72425790 Msa0223010:intron 40.0%
! ATTGCTAGTGATAAGGTACC+TGG - chr2_1:72425904-72425923 Msa0223010:intron 40.0%
TCACTAGCATTACTAACACC+AGG + chr2_1:72425925-72425944 None:intergenic 40.0%
TTAGCCAATATGACCATCCA+TGG + chr2_1:72426054-72426073 None:intergenic 40.0%
!! CAACATACTTTCCGCTTTTC+GGG + chr2_1:72426095-72426114 None:intergenic 40.0%
!! CCAACATACTTTCCGCTTTT+CGG + chr2_1:72426096-72426115 None:intergenic 40.0%
! CGAAAAGCGGAAAGTATGTT+GGG - chr2_1:72426094-72426113 Msa0223010:intron 40.0%
CACAGCGTTGTAACTCTAAT+CGG + chr2_1:72426168-72426187 None:intergenic 40.0%
CCCTTTGCCATTGTTGAATT+TGG - chr2_1:72426207-72426226 Msa0223010:intron 40.0%
GAATTTGGAAAAGAGTGGGA+TGG - chr2_1:72426222-72426241 Msa0223010:intron 40.0%
TGTGGTAAGAGGGATTACTT+AGG - chr2_1:72426291-72426310 Msa0223010:intron 40.0%
TTACTTAGGTTTAAGGGAGC+AGG - chr2_1:72426305-72426324 Msa0223010:intron 40.0%
AGATAGACTATTTGGCTGGA+TGG - chr2_1:72426335-72426354 Msa0223010:intron 40.0%
TATAGTTGGCAAACACCTGA+AGG - chr2_1:72426386-72426405 Msa0223010:intron 40.0%
CAAACACCTGAAGGAAAATG+TGG - chr2_1:72426395-72426414 Msa0223010:intron 40.0%
! AGTTTCTGGAAAAGAAGCTG+AGG - chr2_1:72426428-72426447 Msa0223010:intron 40.0%
GACAGCAAGCAAATATGATG+AGG - chr2_1:72426524-72426543 Msa0223010:CDS 40.0%
ATGAGGCTAATGCATTCCTA+AGG - chr2_1:72426541-72426560 Msa0223010:CDS 40.0%
TGCATTCCTAAGGAAAGTGA+TGG - chr2_1:72426551-72426570 Msa0223010:CDS 40.0%
! GATGCTTGAAGCTTTTAACG+AGG - chr2_1:72426587-72426606 Msa0223010:CDS 40.0%
! GATTTAGAGCCGAAACATTC+TGG - chr2_1:72426665-72426684 Msa0223010:CDS 40.0%
!! CGCATCTTGCTGATTTCTAA+TGG + chr2_1:72426819-72426838 None:intergenic 40.0%
!! GTATCAGGAGAAAGTATCGA+AGG - chr2_1:72426854-72426873 Msa0223010:intron 40.0%
CGAAGGATCATGAAATAGCT+AGG - chr2_1:72426871-72426890 Msa0223010:intron 40.0%
AGGATCATGAAATAGCTAGG+CGG - chr2_1:72426874-72426893 Msa0223010:intron 40.0%
GTGTTCAAGAGAGGGTTAAA+AGG + chr2_1:72427064-72427083 None:intergenic 40.0%
TCCTTACTCTATGGACCATT+TGG - chr2_1:72427204-72427223 Msa0223010:CDS 40.0%
ACCAAATGGTCCATAGAGTA+AGG + chr2_1:72427208-72427227 None:intergenic 40.0%
GGCAATAGAAGAGCAACAAA+AGG - chr2_1:72427324-72427343 Msa0223010:CDS 40.0%
GTCTTTGGCTGAAGAACATA+AGG - chr2_1:72427363-72427382 Msa0223010:intron 40.0%
AAAATTCATGACCTGGAGAG+AGG - chr2_1:72427501-72427520 Msa0223010:intron 40.0%
CTCCAATGTGATTCATTACC+TGG + chr2_1:72427581-72427600 None:intergenic 40.0%
GAAAAAGAAGAGGAGTTGGA+AGG - chr2_1:72427654-72427673 Msa0223010:CDS 40.0%
! CACTTTTGGACACAAACAAC+TGG + chr2_1:72428284-72428303 None:intergenic 40.0%
! ATTCTTTTCCTTGTTCGCAG+TGG - chr2_1:72428527-72428546 Msa0223010:CDS 40.0%
TTCACAGAAATTATGGCTCG+AGG + chr2_1:72428574-72428593 None:intergenic 40.0%
AAGCACAACTTCGCGAAAAA+TGG - chr2_1:72428680-72428699 Msa0223010:intron 40.0%
TGATAAAGACGGGAAATCCA+TGG - chr2_1:72428783-72428802 Msa0223010:intron 40.0%
TACAAAGCATGGGATGCTAT+TGG - chr2_1:72428894-72428913 Msa0223010:intron 40.0%
TTTCCCTGATATGAACTGCA+TGG - chr2_1:72428978-72428997 Msa0223010:five_prime_UTR 40.0%
AAGTTTGAAGGATGAGTTCG+GGG - chr2_1:72429068-72429087 Msa0223010:five_prime_UTR 40.0%
TTAAACGAGTACAACCCTAG+TGG - chr2_1:72429129-72429148 Msa0223010:five_prime_UTR 40.0%
!!! TACCGGAACTCTGGAATTTT+AGG - chr2_1:72429163-72429182 Msa0223010:five_prime_UTR 40.0%
!!! ACCGGAACTCTGGAATTTTA+GGG - chr2_1:72429164-72429183 Msa0223010:five_prime_UTR 40.0%
TCCCTAAAATTCCAGAGTTC+CGG + chr2_1:72429168-72429187 None:intergenic 40.0%
!!! GAACTCTGGAATTTTAGGGA+AGG - chr2_1:72429168-72429187 Msa0223010:five_prime_UTR 40.0%
!! TCTGGAATTTTAGGGAAGGA+AGG - chr2_1:72429172-72429191 Msa0223010:five_prime_UTR 40.0%
TTATTGAGGCTTCATTTGGG+TGG - chr2_1:72429263-72429282 Msa0223010:five_prime_UTR 40.0%
CAATCCAATCACAATGCCAA+TGG - chr2_1:72429354-72429373 Msa0223010:five_prime_UTR 40.0%
GGTTCAAACTTAGAAACGAG+TGG - chr2_1:72429440-72429459 Msa0223010:five_prime_UTR 40.0%
GAAAATAAACGTGACCTGGG+TGG + chr2_1:72424826-72424845 None:intergenic 45.0%
TTGAGTAATCTTCCCGCACA+AGG - chr2_1:72425194-72425213 Msa0223010:intron 45.0%
! CTGTCCGTTTTGCTACAACA+AGG - chr2_1:72425723-72425742 Msa0223010:intron 45.0%
ATGAGTTGTTTGTCTGGCCA+TGG - chr2_1:72426034-72426053 Msa0223010:intron 45.0%
! CCGAAAAGCGGAAAGTATGT+TGG - chr2_1:72426093-72426112 Msa0223010:intron 45.0%
AAGGAGGAGCTGAACATGAA+AGG - chr2_1:72426135-72426154 Msa0223010:intron 45.0%
AGGAGGAGCTGAACATGAAA+GGG - chr2_1:72426136-72426155 Msa0223010:intron 45.0%
CGATTAGAGTTACAACGCTG+TGG - chr2_1:72426166-72426185 Msa0223010:intron 45.0%
!! CAAAGGGTGTTTGTCCTCTA+GGG + chr2_1:72426194-72426213 None:intergenic 45.0%
GAAGTTAGAGAGGAGCTTTC+AGG - chr2_1:72426260-72426279 Msa0223010:intron 45.0%
GAGCGAGGAGATAGACTATT+TGG - chr2_1:72426327-72426346 Msa0223010:intron 45.0%
GAGGAGATAGACTATTTGGC+TGG - chr2_1:72426331-72426350 Msa0223010:intron 45.0%
GAAAAGAAGCTGAGGACACA+AGG - chr2_1:72426436-72426455 Msa0223010:CDS 45.0%
AAAGCGAAGACGCTTGTCTT+TGG - chr2_1:72426459-72426478 Msa0223010:CDS 45.0%
GAAGACGCTTGTCTTTGGTT+TGG - chr2_1:72426464-72426483 Msa0223010:CDS 45.0%
GGATCATGAAATAGCTAGGC+GGG - chr2_1:72426875-72426894 Msa0223010:intron 45.0%
TGAACTCAAGTCCCGTGAAA+AGG - chr2_1:72426917-72426936 Msa0223010:intron 45.0%
! CTTCTGCAGATCCTTTTCAC+GGG + chr2_1:72426931-72426950 None:intergenic 45.0%
! GCTTCTGCAGATCCTTTTCA+CGG + chr2_1:72426932-72426951 None:intergenic 45.0%
TTGGAGATAGAACGGCTGAA+AGG - chr2_1:72427549-72427568 Msa0223010:intron 45.0%
GGAAATCAAAATGGAGCTGC+AGG - chr2_1:72427632-72427651 Msa0223010:CDS 45.0%
GCAGGAAAAAGAAGAGGAGT+TGG - chr2_1:72427650-72427669 Msa0223010:CDS 45.0%
GGAAGATCTTCAACAGACAC+TGG - chr2_1:72427680-72427699 Msa0223010:CDS 45.0%
TCACCTTTGGACACAGACAA+CGG + chr2_1:72428221-72428240 None:intergenic 45.0%
TTGTCTGTGTCCAAAGGTGA+TGG - chr2_1:72428221-72428240 Msa0223010:CDS 45.0%
!! AGTTTGTTGCTGTTGCCTTG+CGG - chr2_1:72428473-72428492 Msa0223010:CDS 45.0%
ACAATGAAATCATGGCCGCA+AGG + chr2_1:72428491-72428510 None:intergenic 45.0%
GCGGCCATGATTTCATTGTT+TGG - chr2_1:72428492-72428511 Msa0223010:CDS 45.0%
TTTCCTTGTTCGCAGTGGAT+TGG - chr2_1:72428532-72428551 Msa0223010:CDS 45.0%
CTCTTGGCTGCTTCCAAAAA+TGG + chr2_1:72428622-72428641 None:intergenic 45.0%
GGCAATTGAAAGCAATCGAG+TGG - chr2_1:72428701-72428720 Msa0223010:intron 45.0%
AATCGAGTGGTGCTCAAAGT+GGG - chr2_1:72428714-72428733 Msa0223010:intron 45.0%
ACTGTCTTAAAGATCCCAGC+TGG - chr2_1:72428740-72428759 Msa0223010:intron 45.0%
TGCCAAATAAGTGCTAGCAG+CGG + chr2_1:72428952-72428971 None:intergenic 45.0%
GGTCCATGCAGTTCATATCA+GGG + chr2_1:72428984-72429003 None:intergenic 45.0%
AATTCCAGAGTTCCGGTACT+GGG + chr2_1:72429161-72429180 None:intergenic 45.0%
AAATTCCAGAGTTCCGGTAC+TGG + chr2_1:72429162-72429181 None:intergenic 45.0%
CCAACCATTGGCATTGTGAT+TGG + chr2_1:72429361-72429380 None:intergenic 45.0%
CCAATCACAATGCCAATGGT+TGG - chr2_1:72429358-72429377 Msa0223010:five_prime_UTR 45.0%
GGGTGGGTACTTCTTCACTA+AGG + chr2_1:72424809-72424828 None:intergenic 50.0%
!! TAGTGAAGAAGTACCCACCC+AGG - chr2_1:72424809-72424828 Msa0223010:three_prime_UTR 50.0%
GAATCAACGGCGAATACCAG+AGG + chr2_1:72425145-72425164 None:intergenic 50.0%
ACGCGAGTCACCCAAAATTC+TGG + chr2_1:72425785-72425804 None:intergenic 50.0%
GTTGTTTGTCTGGCCATGGA+TGG - chr2_1:72426038-72426057 Msa0223010:intron 50.0%
CTGGCCATGGATGGTCATAT+TGG - chr2_1:72426047-72426066 Msa0223010:intron 50.0%
!! GCAAAGGGTGTTTGTCCTCT+AGG + chr2_1:72426195-72426214 None:intergenic 50.0%
AGAAATCAGCAAGATGCGGC+AGG - chr2_1:72426821-72426840 Msa0223010:intron 50.0%
TGAAATAGCTAGGCGGGAAC+TGG - chr2_1:72426881-72426900 Msa0223010:intron 50.0%
TTGCATCAAGTCCTCTCTCC+AGG + chr2_1:72427515-72427534 None:intergenic 50.0%
GGAGCTGCAGGAAAAAGAAG+AGG - chr2_1:72427644-72427663 Msa0223010:CDS 50.0%
ATCCCGTTGTCTGTGTCCAA+AGG - chr2_1:72428215-72428234 Msa0223010:CDS 50.0%
CACCTTTGGACACAGACAAC+GGG + chr2_1:72428220-72428239 None:intergenic 50.0%
CATCCAATCCACTGCGAACA+AGG + chr2_1:72428538-72428557 None:intergenic 50.0%
!! GTGGATTGGATGCCCAAAGA+AGG - chr2_1:72428546-72428565 Msa0223010:CDS 50.0%
CAATCGAGTGGTGCTCAAAG+TGG - chr2_1:72428713-72428732 Msa0223010:intron 50.0%
ACTTTGAACGGATGCCAGCT+GGG + chr2_1:72428757-72428776 None:intergenic 50.0%
AACTTTGAACGGATGCCAGC+TGG + chr2_1:72428758-72428777 None:intergenic 50.0%
TGCCGCTGCTAGCACTTATT+TGG - chr2_1:72428947-72428966 Msa0223010:intron 50.0%
CGGTCCATGCAGTTCATATC+AGG + chr2_1:72428985-72429004 None:intergenic 50.0%
! TGCAGTAGCTACAGCTCTGA+AGG - chr2_1:72429104-72429123 Msa0223010:five_prime_UTR 50.0%
ACGAGTACAACCCTAGTGGT+AGG - chr2_1:72429133-72429152 Msa0223010:five_prime_UTR 50.0%
GTACTGGGTACCTACCACTA+GGG + chr2_1:72429146-72429165 None:intergenic 50.0%
TAGTGGTAGGTACCCAGTAC+CGG - chr2_1:72429146-72429165 Msa0223010:five_prime_UTR 50.0%
AGGAAGGAAAGCCTCGTTGA+AGG - chr2_1:72429188-72429207 Msa0223010:five_prime_UTR 50.0%
AAGGAAAGCCTCGTTGAAGG+AGG - chr2_1:72429191-72429210 Msa0223010:five_prime_UTR 50.0%
AGGAAAGCCTCGTTGAAGGA+GGG - chr2_1:72429192-72429211 Msa0223010:five_prime_UTR 50.0%
GCAAAACGGACAGCGATACC+TGG + chr2_1:72425716-72425735 None:intergenic 55.0%
TTTGGGTGACTCGCGTGAGA+CGG - chr2_1:72425789-72425808 Msa0223010:intron 55.0%
ACAACGCTGTGGAACCCTAG+AGG - chr2_1:72426177-72426196 Msa0223010:intron 55.0%
!! AGCTTTCAGGCAGAGCACTG+TGG - chr2_1:72426273-72426292 Msa0223010:intron 55.0%
!! AGGCAGAGCACTGTGGTAAG+AGG - chr2_1:72426280-72426299 Msa0223010:intron 55.0%
!! GGCAGAGCACTGTGGTAAGA+GGG - chr2_1:72426281-72426300 Msa0223010:intron 55.0%
! GCAGGTTGAACGCGAGTATC+AGG - chr2_1:72426839-72426858 Msa0223010:intron 55.0%
ACGGCTGAAAGGAGCTTTCC+AGG - chr2_1:72427560-72427579 Msa0223010:intron 55.0%
AGAAGAGGAGTTGGAAGGCG+TGG - chr2_1:72427659-72427678 Msa0223010:CDS 55.0%
TGGCTCGAGGAGCCTTCTTT+GGG + chr2_1:72428561-72428580 None:intergenic 55.0%
ATGGCTCGAGGAGCCTTCTT+TGG + chr2_1:72428562-72428581 None:intergenic 55.0%
TGCTAGCAGCGGCAAGTTTC+AGG + chr2_1:72428941-72428960 None:intergenic 55.0%
GAAGGATGAGTTCGGGGATG+AGG - chr2_1:72429074-72429093 Msa0223010:five_prime_UTR 55.0%
! GGTACTGGGTACCTACCACT+AGG + chr2_1:72429147-72429166 None:intergenic 55.0%
GGAAACACCCTCCTTCAACG+AGG + chr2_1:72429202-72429221 None:intergenic 55.0%
GGTTTAAGGGAGCAGGAGCG+AGG - chr2_1:72426312-72426331 Msa0223010:intron 60.0%
CTAGGCGGGAACTGGAAGCT+CGG - chr2_1:72426889-72426908 Msa0223010:intron 60.0%
! GGTACCCAGTACCGGAACTC+TGG - chr2_1:72429154-72429173 Msa0223010:five_prime_UTR 60.0%
GGCGGGAACTGGAAGCTCGG+AGG - chr2_1:72426892-72426911 Msa0223010:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 72424677 72429513 72424677 ID=Msa0223010;Name=Msa0223010
chr2_1 mRNA 72424677 72429513 72424677 ID=Msa0223010-mRNA-1;Parent=Msa0223010;Name=Msa0223010-mRNA-1;_AED=0.26;_eAED=0.26;_QI=539|0.8|1|1|0.8|0.83|6|244|655
chr2_1 exon 72424677 72425154 72424677 ID=Msa0223010-mRNA-1:exon:20978;Parent=Msa0223010-mRNA-1
chr2_1 exon 72425386 72425643 72425386 ID=Msa0223010-mRNA-1:exon:20977;Parent=Msa0223010-mRNA-1
chr2_1 exon 72426429 72426713 72426429 ID=Msa0223010-mRNA-1:exon:20976;Parent=Msa0223010-mRNA-1
chr2_1 exon 72427186 72427367 72427186 ID=Msa0223010-mRNA-1:exon:20975;Parent=Msa0223010-mRNA-1
chr2_1 exon 72427581 72428589 72427581 ID=Msa0223010-mRNA-1:exon:20974;Parent=Msa0223010-mRNA-1
chr2_1 exon 72428975 72429513 72428975 ID=Msa0223010-mRNA-1:exon:20973;Parent=Msa0223010-mRNA-1
chr2_1 five_prime_UTR 72428975 72429513 72428975 ID=Msa0223010-mRNA-1:five_prime_utr;Parent=Msa0223010-mRNA-1
chr2_1 CDS 72427581 72428589 72427581 ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1 CDS 72427186 72427367 72427186 ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1 CDS 72426429 72426713 72426429 ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1 CDS 72425386 72425643 72425386 ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1 CDS 72424921 72425154 72424921 ID=Msa0223010-mRNA-1:cds;Parent=Msa0223010-mRNA-1
chr2_1 three_prime_UTR 72424677 72424920 72424677 ID=Msa0223010-mRNA-1:three_prime_utr;Parent=Msa0223010-mRNA-1
Gene Sequence

>Msa0223010

ATGTCCAAAAGATCAAAACATACTCATGATTCGGATTATGAATACTACGAGAGTAGATATTACGAAGACTTGAAGGATGATTACTACAAGGACAAGCTCAAAATCTCTGATTCCAGGTATCGCTGTCCGTTTTGCTACAACAAGGATTACTACTCTTTGAGCGAGTTATTGAGACATGCTTCCAGAATTTTGGGTGACTCGCGTGAGACGGATAAAGAAATTGCTAAACACTCTGCTTTGAAAATGTATATTGAAAGGTATCTAGATGTTAAAGTTGATAGAATTAGGTTATCTGGTGATAGAATTGCTAGTGATAAGGTACCTGGTGTTAGTAATGCTAGTGATAAGACTGTTAATTTGAGTATCGCTAATGAGAAGTCACGTATTATGAATGTCGATAAGGGTCAGTTAGCTAACAAGAACGTCGTTGATGATGAGTTGTTTGTCTGGCCATGGATGGTCATATTGGCTAACAATGTTACTAATTTTGACCCGAAAAGCGGAAAGTATGTTGGGAAGAATCATAAGAAAATTAAGGAGGAGCTGAACATGAAAGGGTTTCAGCCGATTAGAGTTACAACGCTGTGGAACCCTAGAGGACAAACACCCTTTGCCATTGTTGAATTTGGAAAAGAGTGGGATGGTTTTGACAATGCTATGAAGTTAGAGAGGAGCTTTCAGGCAGAGCACTGTGGTAAGAGGGATTACTTAGGTTTAAGGGAGCAGGAGCGAGGAGATAGACTATTTGGCTGGATGGCACGTCATGATGACTATAATTTAAAGGATATAGTTGGCAAACACCTGAAGGAAAATGTGGATTTGAAAACAGTTTCTGGAAAAGAAGCTGAGGACACAAGGAAAGCGAAGACGCTTGTCTTTGGTTTGGCCAATACCTTAAAGCAGAAGACTGATGAATTGGAACAGACAGCAAGCAAATATGATGAGGCTAATGCATTCCTAAGGAAAGTGATGGATCAAAAAGAGAAGATGCTTGAAGCTTTTAACGAGGAAATCAGCAAGATGCGGCAGGTTGAACGCGAGTATCAGGAGAAAGTATCGAAGGATCATGAAATAGCTAGGCGGGAACTGGAAGCTCGGAGGAATGAACTCAAGTCCCGTGAAAAGGATCTGCAGAAGCGTCAAGCAGATAATCTCAATGAGAGAAACAAGCTATATCTTGAGAAGAAAAATAAAGAAAAGGAGAAACTTCACAAGAAAATTCATGACCTGGAGAGAGGACTTGATGCAAAACAAGCATTGGAATTGGAGATAGAACGGCTGAAAGGAGCTTTCCAGGTAATGAATCACATTGGAGAGACTGATCTAGAAGAGAAGAAAAAACTGGAGGAAATCAAAATGGAGCTGCAGGAAAAAGAAGAGGAGTTGGAAGGCGTGGAAGATCTTCAACAGACACTGGTTGTTCAAGAGCGAAAAACTAATGACGAGTTGCAAGATGCCCGCAAAAAATTGATAAGTTGGATTGGATGCCCAAAGAAGGCTCCTCGAGCCATAATTTCTGTGAAAAGGATGGGTGAACTTGAGATTAAGCCATTTTTGGAAGCAGCCAAGAGAAAGTTTTCTGATGAAGTGAATGAGAAAAAAGCAACTAAAGCACAACTTCGCGAAAAATGGCAATTGAAAGCAATCGAGTGGTGCTCAAAGTGGGATGACTGTCTTAAAGATCCCAGCTGGCATCCGTTCAAAGTTGAGACTGATAAAGACGGGAAATCCATGGAAATTTTAGACGGAGAAGATGAAAAGCTAAAAAGTTTGAAGGATGAGTTCGGGGATGAGGTGCATGATGCAGTAGCTACAGCTCTGAAGGAGTTAAACGAGTACAACCCTAGTGGTAGGTACCCAGTACCGGAACTCTGGAATTTTAGGGAAGGAAGGAAAGCCTCGTTGAAGGAGGGTGTTTCCCATTTAATTAGGCAATGGAAATCAAATAAGGGAAAGAAAACTTATTGA

Protein sequence

>Msa0223010

MSKRSKHTHDSDYEYYESRYYEDLKDDYYKDKLKISDSRYRCPFCYNKDYYSLSELLRHASRILGDSRETDKEIAKHSALKMYIERYLDVKVDRIRLSGDRIASDKVPGVSNASDKTVNLSIANEKSRIMNVDKGQLANKNVVDDELFVWPWMVILANNVTNFDPKSGKYVGKNHKKIKEELNMKGFQPIRVTTLWNPRGQTPFAIVEFGKEWDGFDNAMKLERSFQAEHCGKRDYLGLREQERGDRLFGWMARHDDYNLKDIVGKHLKENVDLKTVSGKEAEDTRKAKTLVFGLANTLKQKTDELEQTASKYDEANAFLRKVMDQKEKMLEAFNEEISKMRQVEREYQEKVSKDHEIARRELEARRNELKSREKDLQKRQADNLNERNKLYLEKKNKEKEKLHKKIHDLERGLDAKQALELEIERLKGAFQVMNHIGETDLEEKKKLEEIKMELQEKEEELEGVEDLQQTLVVQERKTNDELQDARKKLISWIGCPKKAPRAIISVKRMGELEIKPFLEAAKRKFSDEVNEKKATKAQLREKWQLKAIEWCSKWDDCLKDPSWHPFKVETDKDGKSMEILDGEDEKLKSLKDEFGDEVHDAVATALKELNEYNPSGRYPVPELWNFREGRKASLKEGVSHLIRQWKSNKGKKTY*