AlfalfaGEDB | Msa0217490

M. sativa cultivar zhongmu-4 / Msa0217490

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217490	XP_003596613.1	98.696	230	2	1	1	229	1	230	3.78e-164	462

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217490	sp\|Q9FH37\|ILR3_ARATH	69.787	235	64	5	1	229	1	234	2.23e-107	311

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217490	B7FHX6	98.696	230	2	1	1	229	1	230	1.80e-164	462

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TFs/TRs:

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Gene ID	Type	Classification
Msa0217490	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0217490	Msa0259240	-0.807287	5.442048e-50	-8.615850e-47
Msa0217490	Msa0334960	0.924930	3.642181e-90	-8.615850e-47
Msa0217490	Msa0403480	0.808977	2.375673e-50	-8.615850e-47
Msa0217490	Msa0720740	-0.824507	7.776805e-54	-8.615850e-47
Msa0217490	Msa0803780	-0.817506	3.182719e-52	-8.615850e-47
Msa0217490	Msa0894400	-0.825709	4.043612e-54	-8.615850e-47
Msa0217490	Msa0921000	-0.806458	8.146364e-50	-8.615850e-47
Msa0217490	Msa1190100	0.802483	5.491189e-49	-8.615850e-47
Msa0217490	Msa1258030	0.805253	1.459726e-49	-8.615850e-47
Msa0217490	Msa1390670	-0.803217	3.872676e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217490	MtrunA17_Chr2g0319301	98.696	230	2	1	1	229	1	230	3.47e-168	462
Msa0217490	MtrunA17_Chr4g0042041	78.571	238	41	4	1	229	1	237	2.13e-125	354
Msa0217490	MtrunA17_Chr2g0323031	50.195	257	84	8	9	229	12	260	9.91e-73	222
Msa0217490	MtrunA17_Chr1g0167821	52.273	176	80	1	54	229	75	246	4.86e-58	184
Msa0217490	MtrunA17_Chr4g0038511	51.515	99	47	1	69	167	6	103	3.85e-23	94.4
Msa0217490	MtrunA17_Chr1g0161461	36.806	144	78	3	32	167	36	174	1.55e-19	85.9
Msa0217490	MtrunA17_Chr4g0060591	33.898	118	74	2	51	168	13	126	2.12e-13	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217490	AT5G54680.1	69.787	235	64	5	1	229	1	234	2.27e-108	311
Msa0217490	AT1G51070.1	62.343	239	67	6	1	229	1	226	6.23e-95	277
Msa0217490	AT1G51070.2	65.829	199	57	4	36	229	100	292	3.20e-84	252
Msa0217490	AT4G14410.2	52.041	196	77	6	37	229	96	277	2.87e-55	178
Msa0217490	AT4G14410.3	52.041	196	77	6	37	229	96	277	2.87e-55	178
Msa0217490	AT4G14410.1	52.041	196	77	6	37	229	102	283	3.25e-55	178
Msa0217490	AT3G23210.2	52.261	199	87	5	35	229	97	291	5.16e-55	178
Msa0217490	AT3G23210.1	52.261	199	87	5	35	229	126	320	1.42e-54	177
Msa0217490	AT3G19860.1	45.299	117	59	2	66	178	2	117	1.27e-22	93.6
Msa0217490	AT3G19860.3	45.299	117	59	2	66	178	33	148	2.31e-22	93.6

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Find 96 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAAACCACGTTTGA+GGG	0.462810	2_1:-64318834	None:intergenic
AAATCTCATTTCTTCACCGC+CGG	0.486690	2_1:+64318959	Msa0217490:five_prime_UTR
AACTAAAAGGAAAGAGTGTA+TGG	0.377933	2_1:-64321120	None:intergenic
AACTTCGTGATGAGAAGCAG+AGG	0.627738	2_1:+64320810	Msa0217490:CDS
AAGAACCTGGTTCGAAGAAG+AGG	0.561194	2_1:+64319967	Msa0217490:CDS
AAGGAGCCATCGACAGAAAC+AGG	0.397378	2_1:-64319076	None:intergenic
AAGGCCACCTAAAACAGACA+AGG	0.714338	2_1:+64320492	Msa0217490:CDS
AAGTTGAAAGACTCAAATTC+AGG	0.412450	2_1:+64320571	Msa0217490:CDS
AATCTCATTTCTTCACCGCC+GGG	0.536866	2_1:+64318960	Msa0217490:five_prime_UTR
AATGCAGCAGGGATTGCAGG+AGG	0.644570	2_1:-64320905	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAAAACCACGTTTGA+GGG	-	chr2_1:64318837-64318856	None:intergenic	30.0%
AAAAATGAAAACCACGTTTG+AGG	-	chr2_1:64318838-64318857	None:intergenic	30.0%
CAGGAATTTCATCAATCAAA+GGG	-	chr2_1:64319060-64319079	None:intergenic	30.0%
ACAGGAATTTCATCAATCAA+AGG	-	chr2_1:64319061-64319080	None:intergenic	30.0%
TTTGTAGTAGAACTTGAACT+AGG	+	chr2_1:64319352-64319371	Msa0217490:intron	30.0%
AAGGAATTGCAACAGTAATT+GGG	-	chr2_1:64319783-64319802	None:intergenic	30.0%
AAAGGAATTGCAACAGTAAT+TGG	-	chr2_1:64319784-64319803	None:intergenic	30.0%
AAACCTAAAATCCAAGGTAA+AGG	-	chr2_1:64319802-64319821	None:intergenic	30.0%
AAACCAAAACCTAAAATCCA+AGG	-	chr2_1:64319808-64319827	None:intergenic	30.0%
CTATCATCCATTTCAATACT+AGG	-	chr2_1:64319921-64319940	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	64318742	64321440	64318742	ID=Msa0217490;Name=Msa0217490
chr2_1	mRNA	64318742	64321440	64318742	ID=Msa0217490-mRNA-1;Parent=Msa0217490;Name=Msa0217490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=277\|1\|1\|1\|1\|1\|5\|380\|229
chr2_1	exon	64318742	64319137	64318742	ID=Msa0217490-mRNA-1:exon:17817;Parent=Msa0217490-mRNA-1
chr2_1	exon	64319923	64319988	64319923	ID=Msa0217490-mRNA-1:exon:17818;Parent=Msa0217490-mRNA-1
chr2_1	exon	64320279	64320356	64320279	ID=Msa0217490-mRNA-1:exon:17819;Parent=Msa0217490-mRNA-1
chr2_1	exon	64320459	64320621	64320459	ID=Msa0217490-mRNA-1:exon:17820;Parent=Msa0217490-mRNA-1
chr2_1	exon	64320797	64321440	64320797	ID=Msa0217490-mRNA-1:exon:17821;Parent=Msa0217490-mRNA-1
chr2_1	five_prime_UTR	64318742	64319018	64318742	ID=Msa0217490-mRNA-1:five_prime_utr;Parent=Msa0217490-mRNA-1
chr2_1	CDS	64319019	64319137	64319019	ID=Msa0217490-mRNA-1:cds;Parent=Msa0217490-mRNA-1
chr2_1	CDS	64319923	64319988	64319923	ID=Msa0217490-mRNA-1:cds;Parent=Msa0217490-mRNA-1
chr2_1	CDS	64320279	64320356	64320279	ID=Msa0217490-mRNA-1:cds;Parent=Msa0217490-mRNA-1
chr2_1	CDS	64320459	64320621	64320459	ID=Msa0217490-mRNA-1:cds;Parent=Msa0217490-mRNA-1
chr2_1	CDS	64320797	64321060	64320797	ID=Msa0217490-mRNA-1:cds;Parent=Msa0217490-mRNA-1
chr2_1	three_prime_UTR	64321061	64321440	64321061	ID=Msa0217490-mRNA-1:three_prime_utr;Parent=Msa0217490-mRNA-1

Gene Sequence

>Msa0217490

ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACCCTTTGATTGATGAAATTCCTGTTTCTGTCGATGGCTCCTTCGCCTTCACGTGGCCCCCACCTCAACTCTCCAATGGCGGTATTGAAATGGATGATAGCTCTCTAGTGGATTCTGATGGTATCAAAGAACCTGGTTCGAAGAAGAGAGGTAGATCGGATTCATGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGTTGCGGAGGGATAGGCTGAACGACAAGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCACCTAAAACAGACAAGGCAGCAATTCTGATTGATGCTGTCCGAATGGTGACACAGTTGCGGGGTGAAGCCCAAAAGTTGAAAGACTCAAATTCAGGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTTGAGAAGAATGAACTTCGTGATGAGAAGCAGAGGCTTAAGGCTGAGAAGGAGAAGTTGGAGCAGCAGGTGAAATCAATGAACACCCAACCCAGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCATCAAGGCCAAGCCCCAAACAAGTTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCGCCGTGGATACCTCACAAGATCATGTACTCCGTCCACCAGTTGCCTAA

Protein sequence

>Msa0217490

MVSPENTNWLFDYPLIDEIPVSVDGSFAFTWPPPQLSNGGIEMDDSSLVDSDGIKEPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNTQPSFLTHPPAIPAAFAHQGQAPNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA*