AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0220010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220010 MtrunA17_Chr2g0323351 81.028 253 11 4 1 219 1 250 9.82e-133 373
Msa0220010 MtrunA17_Chr4g0022901 38.028 284 96 9 1 216 1 272 1.96e-49 162
Msa0220010 MtrunA17_Chr4g0022931 38.406 276 106 7 1 216 1 272 6.72e-49 160
Msa0220010 MtrunA17_Chr2g0323331 56.338 142 50 3 54 195 3 132 5.51e-46 156
Msa0220010 MtrunA17_Chr2g0323331 61.798 89 32 2 105 193 132 218 7.93e-26 102
Msa0220010 MtrunA17_Chr2g0323331 34.524 168 32 5 106 217 221 366 9.07e-17 77.8
Msa0220010 MtrunA17_Chr4g0022911 40.553 217 72 6 1 181 1 196 2.54e-41 142
Msa0220010 MtrunA17_Chr2g0323321 91.228 57 4 1 1 57 1 56 1.16e-33 117
Msa0220010 MtrunA17_Chr4g0022881 34.071 226 96 5 1 190 1 209 1.18e-33 120
Msa0220010 MtrunA17_Chr1g0167661 34.322 236 97 5 1 204 1 210 2.09e-33 120
Msa0220010 MtrunA17_Chr1g0187761 32.927 246 110 6 1 214 1 223 6.10e-33 119
Msa0220010 MtrunA17_Chr4g0022891 32.340 235 96 5 1 190 1 217 5.40e-32 116
Msa0220010 MtrunA17_Chr1g0167691 35.808 229 87 5 1 195 1 203 5.54e-32 117
Msa0220010 MtrunA17_Chr3g0115821 46.610 118 31 1 1 86 1 118 2.63e-31 117
Msa0220010 MtrunA17_Chr2g0323411 50.000 118 27 1 1 86 1 118 9.37e-31 115
Msa0220010 MtrunA17_Chr2g0281071 49.580 119 27 2 1 86 1 119 2.00e-30 114
Msa0220010 MtrunA17_Chr7g0261281 35.849 212 86 3 1 164 1 210 2.07e-30 113
Msa0220010 MtrunA17_Chr4g0048511 47.899 119 29 2 1 86 1 119 7.73e-30 113
Msa0220010 MtrunA17_Chr4g0039971 44.915 118 33 1 1 86 2 119 1.67e-29 112
Msa0220010 MtrunA17_Chr6g0453471 47.458 118 30 1 1 86 1 118 3.32e-29 111
Msa0220010 MtrunA17_Chr7g0274581 43.333 120 36 1 1 88 1 120 1.27e-28 107
Msa0220010 MtrunA17_Chr1g0203411 44.828 116 32 1 1 84 1 116 1.37e-28 108
Msa0220010 MtrunA17_Chr5g0410961 47.458 118 30 1 1 86 1 118 1.40e-28 110
Msa0220010 MtrunA17_Chr4g0042671 47.458 118 30 1 1 86 1 118 1.93e-28 110
Msa0220010 MtrunA17_Chr5g0395281 44.068 118 34 1 1 86 1 118 3.07e-28 108
Msa0220010 MtrunA17_Chr3g0103281 43.966 116 33 1 1 84 1 116 3.39e-28 108
Msa0220010 MtrunA17_Chr4g0057031 48.305 118 29 1 1 86 1 118 5.48e-28 107
Msa0220010 MtrunA17_Chr4g0058631 36.264 182 67 3 1 149 1 166 6.76e-28 108
Msa0220010 MtrunA17_Chr7g0217741 46.610 118 31 1 1 86 1 118 8.55e-28 107
Msa0220010 MtrunA17_Chr6g0452271 43.220 118 35 1 1 86 1 118 2.00e-27 106
Msa0220010 MtrunA17_Chr3g0110351 48.305 118 29 1 1 86 1 118 4.45e-27 105
Msa0220010 MtrunA17_Chr5g0434571 47.458 118 30 1 1 86 37 154 9.35e-27 105
Msa0220010 MtrunA17_Chr2g0309911 44.144 111 30 1 7 85 6 116 3.68e-26 102
Msa0220010 MtrunA17_Chr4g0070611 38.776 147 56 2 1 113 1 147 6.02e-26 102
Msa0220010 MtrunA17_Chr3g0117091 43.860 114 31 2 6 86 5 118 8.67e-26 102
Msa0220010 MtrunA17_Chr1g0211161 42.857 119 35 2 1 86 1 119 1.05e-25 99.8
Msa0220010 MtrunA17_Chr1g0193371 37.195 164 68 3 1 130 1 163 1.43e-25 102
Msa0220010 MtrunA17_Chr3g0131121 45.690 116 31 1 1 84 1 116 1.52e-25 100
Msa0220010 MtrunA17_Chr4g0070641 38.776 147 56 2 1 113 1 147 1.55e-25 97.8
Msa0220010 MtrunA17_Chr8g0342541 42.342 111 32 1 7 85 7 117 1.70e-25 101
Msa0220010 MtrunA17_Chr7g0228891 43.966 116 33 1 1 84 1 116 2.01e-25 100
Msa0220010 MtrunA17_Chr4g0037141 43.590 117 34 1 1 85 1 117 2.35e-25 100
Msa0220010 MtrunA17_Chr1g0152011 38.235 136 51 2 1 103 1 136 3.11e-25 100
Msa0220010 MtrunA17_Chr2g0330041 42.342 111 32 1 7 85 7 117 3.45e-25 101
Msa0220010 MtrunA17_Chr8g0342521 43.243 111 31 1 7 85 7 117 3.56e-25 100
Msa0220010 MtrunA17_Chr1g0151941 31.633 196 98 4 1 162 1 194 3.94e-25 99.0
Msa0220010 MtrunA17_Chr1g0193801 43.966 116 33 1 1 84 1 116 5.78e-25 100
Msa0220010 MtrunA17_Chr4g0068061 30.734 218 88 3 1 155 1 218 7.09e-25 99.8
Msa0220010 MtrunA17_Chr5g0435101 41.026 117 37 1 2 86 1 117 7.38e-25 97.1
Msa0220010 MtrunA17_Chr7g0270891 43.966 116 33 1 1 84 1 116 8.08e-25 100
Msa0220010 MtrunA17_Chr3g0135311 36.310 168 68 3 1 135 1 162 8.31e-25 99.8
Msa0220010 MtrunA17_Chr4g0060721 37.063 143 58 1 1 111 2 144 1.08e-24 99.4
Msa0220010 MtrunA17_Chr4g0028311 43.220 118 34 2 1 85 1 118 1.17e-24 99.0
Msa0220010 MtrunA17_Chr7g0217221 42.149 121 38 1 1 89 1 121 1.35e-24 97.8
Msa0220010 MtrunA17_Chr8g0349261 46.218 119 30 3 1 85 1 119 2.07e-24 97.8
Msa0220010 MtrunA17_Chr7g0275911 43.966 116 33 1 1 84 1 116 2.43e-24 97.1
Msa0220010 MtrunA17_Chr5g0400821 39.535 129 45 2 1 96 1 129 2.64e-24 97.8
Msa0220010 MtrunA17_Chr5g0417821 48.148 108 24 1 11 86 6 113 3.02e-24 97.4
Msa0220010 MtrunA17_Chr2g0311221 44.444 108 28 1 3 78 5 112 3.23e-24 97.8
Msa0220010 MtrunA17_Chr3g0092401 42.373 118 36 1 1 86 2 119 5.00e-24 97.1
Msa0220010 MtrunA17_Chr8g0385321 43.966 116 33 1 1 84 1 116 5.95e-24 97.1
Msa0220010 MtrunA17_Chr8g0346561 42.149 121 38 1 1 89 1 121 1.50e-23 95.5
Msa0220010 MtrunA17_Chr7g0269831 38.816 152 53 3 1 120 1 144 1.55e-23 96.7
Msa0220010 MtrunA17_Chr8g0342481 42.478 113 30 3 7 85 7 118 2.31e-23 96.7
Msa0220010 MtrunA17_Chr7g0264641 40.678 118 37 2 1 85 1 118 2.34e-23 94.7
Msa0220010 MtrunA17_Chr3g0121241 43.363 113 32 1 5 85 35 147 2.60e-23 95.1
Msa0220010 MtrunA17_Chr7g0254411 42.373 118 36 1 1 86 1 118 2.82e-23 95.5
Msa0220010 MtrunA17_Chr7g0271241 44.037 109 29 1 1 77 1 109 3.32e-23 95.9
Msa0220010 MtrunA17_Chr6g0453211 43.636 110 30 1 1 78 1 110 4.11e-23 94.7
Msa0220010 MtrunA17_Chr2g0327351 44.144 111 29 2 1 78 1 111 6.51e-23 94.4
Msa0220010 MtrunA17_Chr2g0328771 45.714 105 25 1 12 84 20 124 8.38e-23 94.0
Msa0220010 MtrunA17_Chr8g0387421 39.496 119 40 1 1 87 1 119 9.80e-23 94.0
Msa0220010 MtrunA17_Chr1g0194951 42.241 116 35 1 1 84 1 116 1.02e-22 94.4
Msa0220010 MtrunA17_Chr4g0054391 43.636 110 29 2 1 77 1 110 2.95e-22 92.0
Msa0220010 MtrunA17_Chr4g0032401 43.925 107 28 1 10 84 15 121 5.79e-22 92.0
Msa0220010 MtrunA17_Chr4g0044421 41.525 118 36 2 2 86 1 118 6.92e-22 89.0
Msa0220010 MtrunA17_Chr1g0209661 30.165 242 106 7 8 188 23 262 8.02e-22 91.3
Msa0220010 MtrunA17_Chr3g0088461 42.202 109 31 1 8 84 18 126 2.48e-21 90.5
Msa0220010 MtrunA17_Chr5g0397231 40.385 104 30 1 7 78 7 110 4.31e-21 89.7
Msa0220010 MtrunA17_Chr6g0470971 40.351 114 36 1 7 88 9 122 5.91e-21 88.6
Msa0220010 MtrunA17_Chr4g0072751 42.342 111 31 2 1 78 1 111 1.36e-20 88.2
Msa0220010 MtrunA17_Chr5g0434911 39.640 111 35 1 7 85 16 126 2.38e-20 86.7
Msa0220010 MtrunA17_Chr1g0180391 43.810 105 27 1 12 84 19 123 3.67e-20 85.1
Msa0220010 MtrunA17_Chr7g0228231 35.669 157 66 3 12 134 14 169 3.80e-20 84.7
Msa0220010 MtrunA17_Chr6g0487491 32.298 161 60 3 1 112 1 161 3.88e-20 85.9
Msa0220010 MtrunA17_Chr4g0042611 62.069 58 22 0 1 58 1 58 5.82e-20 80.9
Msa0220010 MtrunA17_Chr1g0203441 41.509 106 30 1 13 86 14 119 5.95e-20 85.5
Msa0220010 MtrunA17_Chr5g0434931 40.187 107 32 1 11 85 34 140 6.22e-20 85.5
Msa0220010 MtrunA17_Chr5g0434831 41.121 107 31 1 11 85 6 112 2.18e-19 82.4
Msa0220010 MtrunA17_Chr5g0434841 39.316 117 38 2 2 85 9 125 2.66e-19 84.3
Msa0220010 MtrunA17_Chr5g0395221 58.621 58 24 0 1 58 1 58 5.04e-19 78.6
Msa0220010 MtrunA17_Chr3g0099131 43.689 103 26 1 12 82 41 143 1.08e-18 84.0
Msa0220010 MtrunA17_Chr8g0342511 55.172 58 26 0 1 58 1 58 2.69e-18 77.0
Msa0220010 MtrunA17_Chr8g0342531 61.538 52 20 0 7 58 7 58 2.99e-18 78.6
Msa0220010 MtrunA17_Chr2g0322521 38.679 106 33 1 9 82 26 131 3.32e-18 82.0
Msa0220010 MtrunA17_Chr3g0080861 40.777 103 29 1 12 82 37 139 3.52e-18 82.4
Msa0220010 MtrunA17_Chr1g0154031 41.748 103 28 1 12 82 76 178 4.21e-18 82.0
Msa0220010 MtrunA17_Chr2g0294811 62.069 58 22 0 1 58 1 58 1.33e-17 75.5
Msa0220010 MtrunA17_Chr1g0186061 42.500 120 33 3 13 100 21 136 1.90e-17 78.6
Msa0220010 MtrunA17_Chr7g0228991 38.318 107 34 1 11 85 28 134 1.92e-17 78.6
Msa0220010 MtrunA17_Chr1g0194291 40.187 107 32 1 8 82 17 123 3.32e-17 77.8
Msa0220010 MtrunA17_Chr5g0440781 37.864 103 31 1 13 82 13 115 7.96e-17 75.5
Msa0220010 MtrunA17_Chr6g0450101 40.952 105 30 1 12 84 14 118 8.34e-17 75.9
Msa0220010 MtrunA17_Chr5g0440761 37.864 103 31 1 13 82 13 115 9.17e-17 76.6
Msa0220010 MtrunA17_Chr5g0441141 37.864 103 31 1 13 82 13 115 9.58e-17 76.6
Msa0220010 MtrunA17_Chr8g0342461 54.098 61 23 2 1 58 1 59 1.36e-16 73.6
Msa0220010 MtrunA17_Chr2g0293911 36.508 126 46 2 8 101 20 143 1.65e-16 76.6
Msa0220010 MtrunA17_Chr8g0342471 52.459 61 24 2 1 58 1 59 5.34e-16 72.0
Msa0220010 MtrunA17_Chr7g0220341 35.345 116 41 2 11 92 24 139 7.25e-16 74.3
Msa0220010 MtrunA17_Chr8g0360111 37.255 102 32 1 11 80 24 125 2.90e-15 72.4
Msa0220010 MtrunA17_Chr5g0425591 62.222 45 17 0 13 57 10 54 4.32e-13 63.2
Msa0220010 MtrunA17_Chr3g0099141 56.863 51 22 0 8 58 36 86 7.37e-13 63.5
Msa0220010 MtrunA17_Chr5g0429661 30.000 200 85 9 12 173 120 302 1.70e-12 65.5
Msa0220010 MtrunA17_Chr6g0453751 54.545 55 17 1 11 57 19 73 3.36e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220010 AT2G31180.1 35.586 222 83 5 1 190 1 194 1.08e-32 119
Msa0220010 AT4G21440.1 48.305 118 29 1 1 86 1 118 2.22e-32 120
Msa0220010 AT3G23250.1 34.934 229 100 6 1 185 1 224 9.48e-32 117
Msa0220010 AT4G28110.1 49.153 118 28 1 1 86 1 118 1.34e-31 117
Msa0220010 AT4G05100.1 51.261 119 25 2 1 86 1 119 3.74e-31 116
Msa0220010 AT3G02940.2 48.305 118 29 1 1 86 1 118 3.97e-31 116
Msa0220010 AT3G02940.1 48.305 118 29 1 1 86 1 118 8.18e-31 115
Msa0220010 AT3G02940.3 48.305 118 29 1 1 86 1 118 8.18e-31 115
Msa0220010 AT5G16770.4 47.458 118 30 1 1 86 1 118 1.01e-30 115
Msa0220010 AT5G16770.3 47.458 118 30 1 1 86 1 118 1.01e-30 115
Msa0220010 AT3G01140.2 49.153 118 28 1 1 86 1 118 1.20e-30 115
Msa0220010 AT5G16770.1 47.458 118 30 1 1 86 1 118 1.82e-30 115
Msa0220010 AT5G16770.2 47.458 118 30 1 1 86 1 118 1.82e-30 115
Msa0220010 AT5G15310.1 48.305 118 29 1 1 86 1 118 2.05e-30 114
Msa0220010 AT5G15310.4 48.305 118 29 1 1 86 1 118 2.10e-30 112
Msa0220010 AT1G34670.1 47.458 118 30 1 1 86 1 118 2.48e-30 115
Msa0220010 AT5G15310.2 48.305 118 29 1 1 86 1 118 2.80e-30 114
Msa0220010 AT3G01140.1 48.305 118 29 1 1 86 44 161 6.47e-30 114
Msa0220010 AT5G10280.1 46.610 118 31 1 1 86 1 118 8.35e-30 113
Msa0220010 AT1G18570.1 49.580 119 27 2 1 86 1 119 1.23e-29 113
Msa0220010 AT3G61250.1 48.718 117 28 1 1 85 1 117 1.36e-29 112
Msa0220010 AT5G65230.1 46.610 118 31 1 1 86 1 118 1.47e-29 112
Msa0220010 AT1G74080.1 48.305 118 29 1 1 86 1 118 2.56e-29 112
Msa0220010 AT5G60890.1 47.414 116 29 1 1 84 1 116 4.43e-29 110
Msa0220010 AT5G56110.1 44.828 116 32 1 1 84 1 116 1.61e-28 109
Msa0220010 AT5G07700.1 35.676 185 87 1 1 153 1 185 2.22e-28 109
Msa0220010 AT5G07700.2 35.676 185 87 1 1 153 1 185 2.22e-28 109
Msa0220010 AT1G06180.1 47.414 116 29 1 1 84 1 116 6.63e-28 106
Msa0220010 AT4G22680.1 48.305 118 29 1 1 86 1 118 9.10e-28 106
Msa0220010 AT1G79180.1 42.975 121 37 1 3 91 5 125 1.05e-27 107
Msa0220010 AT4G17785.2 45.378 119 32 2 1 86 1 119 2.16e-27 107
Msa0220010 AT4G12350.1 48.305 118 29 1 1 86 1 118 2.35e-27 105
Msa0220010 AT4G17785.1 45.378 119 32 2 1 86 1 119 2.42e-27 107
Msa0220010 AT5G07690.1 45.299 117 32 1 1 85 1 117 2.52e-27 106
Msa0220010 AT1G57560.1 45.763 118 32 1 1 86 1 118 3.84e-27 105
Msa0220010 AT5G61420.2 44.915 118 33 1 1 86 1 118 4.05e-27 106
Msa0220010 AT1G57560.2 45.763 118 32 1 1 86 1 118 4.18e-27 105
Msa0220010 AT2G16720.1 41.304 138 47 2 1 104 1 138 4.59e-27 104
Msa0220010 AT4G38620.1 37.423 163 66 2 1 131 1 159 1.60e-26 103
Msa0220010 AT5G16600.1 47.458 118 30 1 1 86 1 118 1.70e-26 104
Msa0220010 AT1G66230.1 46.610 118 31 1 1 86 1 118 2.78e-26 102
Msa0220010 AT1G22640.1 42.735 117 35 1 1 85 1 117 6.29e-26 101
Msa0220010 AT4G34990.1 43.220 118 35 1 1 86 1 118 7.03e-26 101
Msa0220010 AT1G35515.1 38.732 142 55 1 1 110 1 142 7.07e-26 100
Msa0220010 AT1G56160.1 43.860 114 32 1 3 84 5 118 7.34e-26 102
Msa0220010 AT5G26660.1 36.082 194 72 5 1 161 1 175 1.38e-25 102
Msa0220010 AT4G09460.1 43.590 117 34 1 1 85 1 117 1.57e-25 100
Msa0220010 AT4G01680.3 44.828 116 32 1 1 84 1 116 1.62e-25 100
Msa0220010 AT1G16490.1 43.860 114 32 1 3 84 5 118 1.88e-25 100
Msa0220010 AT3G13540.1 38.129 139 52 2 4 110 15 151 1.89e-25 100
Msa0220010 AT5G57620.1 42.063 126 40 2 1 93 1 126 2.00e-25 101
Msa0220010 AT5G62470.2 38.356 146 55 2 1 111 1 146 2.86e-25 101
Msa0220010 AT4G01680.1 44.828 116 32 1 1 84 1 116 3.92e-25 100
Msa0220010 AT5G62320.1 44.715 123 29 3 3 86 4 126 4.12e-25 99.0
Msa0220010 AT5G54230.1 46.729 107 25 1 12 86 12 118 4.47e-25 100
Msa0220010 AT3G47600.1 43.220 118 35 1 1 86 1 118 2.05e-24 99.0
Msa0220010 AT3G28910.1 44.068 118 34 1 1 86 1 118 2.25e-24 98.6
Msa0220010 AT1G09540.1 43.103 116 34 1 1 84 1 116 2.27e-24 99.4
Msa0220010 AT3G49690.1 44.068 118 33 2 1 85 1 118 2.40e-24 98.2
Msa0220010 AT3G12820.1 41.379 116 36 1 3 86 5 120 3.24e-24 96.7
Msa0220010 AT3G62610.1 43.103 116 34 1 1 84 1 116 3.72e-24 98.6
Msa0220010 AT1G08810.1 41.935 124 40 1 1 92 1 124 3.80e-24 97.4
Msa0220010 AT3G13890.2 41.441 111 33 1 7 85 7 117 3.89e-24 98.6
Msa0220010 AT1G74430.1 41.525 118 37 1 1 86 1 118 4.52e-24 97.1
Msa0220010 AT3G12720.1 40.541 111 34 1 7 85 17 127 6.17e-24 97.1
Msa0220010 AT5G23000.1 42.373 118 35 2 1 85 1 118 7.21e-24 97.4
Msa0220010 AT5G62470.1 38.356 146 54 3 1 111 1 145 1.08e-23 97.4
Msa0220010 AT3G28470.1 43.636 110 30 1 1 78 1 110 1.49e-23 96.3
Msa0220010 AT2G47460.1 41.379 116 36 1 1 84 1 116 3.42e-23 96.3
Msa0220010 AT5G65790.1 42.149 121 37 2 1 88 1 121 3.49e-23 96.3
Msa0220010 AT2G36890.1 43.220 118 34 2 1 85 1 118 5.10e-23 94.7
Msa0220010 AT2G36890.2 43.220 118 34 2 1 85 42 159 5.40e-23 95.1
Msa0220010 AT5G49330.1 41.379 116 36 1 1 84 1 116 7.23e-23 94.7
Msa0220010 AT4G37780.1 38.710 124 43 2 1 91 1 124 8.13e-23 94.4
Msa0220010 AT1G74650.1 40.833 120 39 1 1 88 1 120 1.54e-22 94.0
Msa0220010 AT5G14340.1 41.379 116 36 1 1 84 13 128 1.66e-22 92.8
Msa0220010 AT1G63910.1 41.071 112 34 1 7 86 7 118 1.77e-22 94.4
Msa0220010 AT1G18710.1 39.655 116 38 1 1 84 1 116 2.88e-22 92.0
Msa0220010 AT4G01680.2 40.625 128 32 2 1 84 1 128 7.84e-22 92.0
Msa0220010 AT4G25560.1 42.149 121 36 3 1 89 1 119 2.12e-21 90.1
Msa0220010 AT3G13890.1 38.333 120 33 2 7 85 7 126 3.38e-21 90.5
Msa0220010 AT3G48920.1 41.880 117 34 2 13 95 19 135 2.32e-20 86.7
Msa0220010 AT5G12870.1 42.991 107 29 1 12 86 18 124 2.51e-20 87.0
Msa0220010 AT3G27920.1 35.537 121 46 1 13 101 15 135 2.23e-19 83.6
Msa0220010 AT5G52260.1 37.097 124 46 1 1 92 1 124 4.47e-19 83.6
Msa0220010 AT5G40350.1 38.333 120 42 1 12 99 17 136 5.00e-19 82.4
Msa0220010 AT3G08500.1 41.905 105 29 1 12 84 30 134 5.54e-19 84.3
Msa0220010 AT5G35550.1 36.975 119 43 1 12 98 14 132 2.15e-18 81.3
Msa0220010 AT5G14750.1 31.515 165 80 2 10 141 14 178 2.32e-18 80.1
Msa0220010 AT3G30210.1 32.663 199 85 6 11 166 26 218 3.28e-18 81.3
Msa0220010 AT5G55020.1 41.905 105 29 1 12 84 26 130 8.74e-18 81.6
Msa0220010 AT5G40330.1 38.462 104 32 1 13 84 13 116 9.50e-18 79.0
Msa0220010 AT5G06100.1 40.187 107 32 1 8 82 28 134 9.52e-18 81.6
Msa0220010 AT2G32460.1 38.739 111 36 1 4 82 10 120 1.11e-17 81.3
Msa0220010 AT1G48000.1 38.793 116 37 2 12 93 32 147 1.15e-17 79.3
Msa0220010 AT5G06100.5 40.187 107 32 1 8 82 28 134 1.17e-17 81.3
Msa0220010 AT5G06100.2 40.187 107 32 1 8 82 28 134 1.17e-17 81.3
Msa0220010 AT5G06100.3 40.187 107 32 1 8 82 28 134 1.17e-17 81.3
Msa0220010 AT5G06100.4 40.187 107 32 1 8 82 28 134 1.17e-17 81.3
Msa0220010 AT2G32460.2 40.385 104 30 1 11 82 5 108 1.25e-17 81.3
Msa0220010 AT4G13480.1 40.708 113 35 1 13 93 7 119 2.77e-17 78.6
Msa0220010 AT4G26930.1 41.748 103 28 1 12 82 19 121 3.00e-17 79.7
Msa0220010 AT3G11440.2 40.777 103 29 1 12 82 41 143 3.23e-17 80.1
Msa0220010 AT3G24310.1 40.678 118 37 2 11 96 17 133 4.02e-17 78.2
Msa0220010 AT3G11440.3 40.777 103 29 1 12 82 41 143 4.09e-17 79.7
Msa0220010 AT3G11440.4 40.777 103 29 1 12 82 41 143 4.09e-17 79.7
Msa0220010 AT3G11440.1 40.777 103 29 1 12 82 41 143 4.09e-17 79.7
Msa0220010 AT3G27810.1 40.952 105 30 1 12 84 20 124 4.14e-17 77.4
Msa0220010 AT1G66380.1 39.423 104 31 1 11 82 7 110 5.18e-17 75.1
Msa0220010 AT1G56650.1 39.423 104 31 1 11 82 7 110 7.73e-17 77.0
Msa0220010 AT1G66390.1 39.423 104 31 1 11 82 7 110 7.84e-17 77.0
Msa0220010 AT1G66370.1 35.385 130 47 2 11 108 7 131 2.10e-16 75.9
Msa0220010 AT2G26960.1 38.679 106 33 1 9 82 17 122 2.47e-16 77.4
Msa0220010 AT3G06490.1 39.252 107 33 1 8 82 15 121 3.32e-16 76.3
Msa0220010 AT1G66380.2 59.574 47 19 0 11 57 7 53 4.09e-12 61.2

Find 46 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACATTTCTCCAAGTTTAT+TGG 0.167900 2_1:-68016208 None:intergenic
TATGAGCTGTCTATTATAAA+TGG 0.180174 2_1:-68016423 None:intergenic
AACATTTCTCCAAGTTTATT+GGG 0.260110 2_1:-68016207 None:intergenic
ATCCTCTTGCATAGCATTAA+TGG 0.275258 2_1:+68016290 Msa0220010:CDS
TGTTGTACTTTGAAATAAAA+TGG 0.292520 2_1:+68016639 Msa0220010:three_prime_UTR
AGACTGTGAGTGAAAATTTC+TGG 0.302943 2_1:+68016394 Msa0220010:CDS
TCCATGTATGCATCCATAAA+AGG 0.332422 2_1:-68016372 None:intergenic
CAACGAGCCTATAGAGAATA+TGG 0.340863 2_1:+68013677 Msa0220010:exon
CGACAACTACCTAAATTTGC+AGG 0.368724 2_1:+68013807 Msa0220010:CDS
AGTAATATAGAATCTTCATT+TGG 0.389173 2_1:-68016453 None:intergenic
CTAGGTATGGCTGTTGGAAT+TGG 0.399200 2_1:+68013784 Msa0220010:CDS
AGATGGTGGACTCGTAATAT+TGG 0.410591 2_1:-68016247 None:intergenic
CACACACTCATACTAAGAAT+TGG 0.412904 2_1:+68013632 Msa0220010:five_prime_UTR
CAAAGTTCTGCATCGTATAC+AGG 0.413524 2_1:-68016495 None:intergenic
GTTCTCACCATATTCTCTAT+AGG 0.417819 2_1:-68013684 None:intergenic
ATTGCTTATGTAACTAGGTA+TGG 0.467457 2_1:+68013771 Msa0220010:CDS
ATGAGCTGTCTATTATAAAT+GGG 0.472463 2_1:-68016422 None:intergenic
AGTTGATTGCTTATGTAACT+AGG 0.476172 2_1:+68013766 Msa0220010:CDS
CTTGTAGATGGTTGTGAAGA+TGG 0.476226 2_1:-68016264 None:intergenic
ATCTCGTTATCTGTTCTCCC+TGG 0.480667 2_1:-68016066 None:intergenic
ATAAATCGTTACTGTAATGT+GGG 0.483206 2_1:+68016530 Msa0220010:exon
CAAGAGGATGCACTTGTAGA+TGG 0.483657 2_1:-68016276 None:intergenic
AAATGATGTTATATTATCTA+CGG 0.486194 2_1:-68016575 None:intergenic
ATGATTTCTGCAAATTTACC+AGG 0.505480 2_1:+68016048 Msa0220010:CDS
AATAAATCGTTACTGTAATG+TGG 0.506570 2_1:+68016529 Msa0220010:exon
CTGTATACGATGCAGAACTT+TGG 0.512601 2_1:+68016496 Msa0220010:CDS
GTGGGAAGAGTTGTAGACTA+AGG 0.513007 2_1:+68013954 Msa0220010:CDS
ATAACGAGATAAAGAACTAC+TGG 0.513695 2_1:+68016079 Msa0220010:CDS
AATATAGAATCTTCATTTGG+AGG 0.536505 2_1:-68016450 None:intergenic
CATATTCTCTATAGGCTCGT+TGG 0.541305 2_1:-68013676 None:intergenic
AATGATGTTATATTATCTAC+GGG 0.542946 2_1:-68016574 None:intergenic
ATATAGAATCTTCATTTGGA+GGG 0.545886 2_1:-68016449 None:intergenic
ATCCATTAATGCTATGCAAG+AGG 0.579170 2_1:-68016292 None:intergenic
TTGCAGGTCTTGAAAGGTGT+GGG 0.585999 2_1:+68013936 Msa0220010:intron
GATGCAGAACTTTGGAGCCA+TGG 0.601687 2_1:+68016504 Msa0220010:CDS
ATGTAACTAGGTATGGCTGT+TGG 0.609352 2_1:+68013778 Msa0220010:CDS
TAAATCGTTACTGTAATGTG+GGG 0.612933 2_1:+68016531 Msa0220010:exon
TTTGCAGGTCTTGAAAGGTG+TGG 0.623855 2_1:+68013935 Msa0220010:intron
TGTATGCATCCATAAAAGGA+AGG 0.631015 2_1:-68016368 None:intergenic
TGATTTCTGCAAATTTACCA+GGG 0.632820 2_1:+68016049 Msa0220010:CDS
ATGGACTAAGGAAAGGCACA+TGG 0.649764 2_1:+68013724 Msa0220010:CDS
AATAAGTCAAACGCTAAACG+TGG 0.658486 2_1:+68016132 Msa0220010:CDS
AAATCGTTACTGTAATGTGG+GGG 0.675282 2_1:+68016532 Msa0220010:exon
CAATTCTTAGTATGAGTGTG+TGG 0.680103 2_1:-68013631 None:intergenic
GAAAGGCACATGGACACCTG+AGG 0.692550 2_1:+68013734 Msa0220010:CDS
GTAGATGGTTGTGAAGATGG+TGG 0.739269 2_1:-68016261 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTTATTTTTCTTACA+TGG - chr2_1:68015451-68015470 None:intergenic 10.0%
!! AATAACAATTAAATTATCAT+TGG - chr2_1:68015563-68015582 None:intergenic 10.0%
!! TTTGTAACAAAAAAAAAAAA+TGG + chr2_1:68016669-68016688 Msa0220010:three_prime_UTR 10.0%
!!! TATAGATACAATAACTTTTT+TGG - chr2_1:68014330-68014349 None:intergenic 15.0%
!! CAAAAAATAAAATAATCAGA+GGG - chr2_1:68014481-68014500 None:intergenic 15.0%
!! AATAATAGATAAATAAAGGA+AGG - chr2_1:68015118-68015137 None:intergenic 15.0%
!!! TTCCTTTATTTATCTATTAT+TGG + chr2_1:68015117-68015136 Msa0220010:intron 15.0%
!!! AAATTTTACTTTTTAAGAGA+GGG - chr2_1:68015305-68015324 None:intergenic 15.0%
!!! TAAATTTTACTTTTTAAGAG+AGG - chr2_1:68015306-68015325 None:intergenic 15.0%
!! ATATGTAATTATTAAAGGAA+TGG - chr2_1:68015363-68015382 None:intergenic 15.0%
!!! TTTTAATCTATTTTGACATA+AGG + chr2_1:68015391-68015410 Msa0220010:intron 15.0%
!! GAAACAATATAAAATTATCA+TGG - chr2_1:68015614-68015633 None:intergenic 15.0%
!! TGAAATTGTGAATAAAAAAA+TGG + chr2_1:68015645-68015664 Msa0220010:intron 15.0%
!! CAAACTTTGATTATATAAAA+TGG + chr2_1:68015683-68015702 Msa0220010:intron 15.0%
!! AAATGATGTTATATTATCTA+CGG - chr2_1:68016578-68016597 None:intergenic 15.0%
!! TTATAAAAACAACACAAAAT+AGG - chr2_1:68016605-68016624 None:intergenic 15.0%
!!! TTTTTTATACCTGCAAATTT+AGG - chr2_1:68013819-68013838 None:intergenic 20.0%
!! ATCAAACTTCATGAAAAATT+GGG + chr2_1:68014043-68014062 Msa0220010:intron 20.0%
!!! ACAGATTTTATTGATAGTTA+CGG - chr2_1:68014226-68014245 None:intergenic 20.0%
!! GCAAAAAATAAAATAATCAG+AGG - chr2_1:68014482-68014501 None:intergenic 20.0%
!!! ATTATATTGAAGTGTTTTTG+TGG - chr2_1:68014595-68014614 None:intergenic 20.0%
!! AATTATCCTTCATTATTCTT+GGG - chr2_1:68014795-68014814 None:intergenic 20.0%
!! TTTATCATATTCATAAACAG+AGG - chr2_1:68014898-68014917 None:intergenic 20.0%
!! TAAAAAACAAACAATTCGTT+TGG + chr2_1:68015026-68015045 Msa0220010:intron 20.0%
!! AAAAAACAAACAATTCGTTT+GGG + chr2_1:68015027-68015046 Msa0220010:intron 20.0%
!! CACCAATAATAGATAAATAA+AGG - chr2_1:68015122-68015141 None:intergenic 20.0%
!! AATTGTATTAAGCATGTTTA+AGG - chr2_1:68015204-68015223 None:intergenic 20.0%
!!! AATTTTACTTTTTAAGAGAG+GGG - chr2_1:68015304-68015323 None:intergenic 20.0%
!! AGTGCATATGTAATTATTAA+AGG - chr2_1:68015368-68015387 None:intergenic 20.0%
!!! AGCATTTTCCTTAAAATTTT+AGG + chr2_1:68015941-68015960 Msa0220010:intron 20.0%
!! TATACTAGTACATGATATTA+TGG + chr2_1:68015979-68015998 Msa0220010:intron 20.0%
!! ATTTATATTAATTGTGCAGA+TGG + chr2_1:68016022-68016041 Msa0220010:intron 20.0%
!!! CTTTATAAGAGTCTTTTTTA+TGG - chr2_1:68016112-68016131 None:intergenic 20.0%
!!! ATTTTTTGAATTTGAGTCTT+TGG - chr2_1:68016169-68016188 None:intergenic 20.0%
!! AGTAATATAGAATCTTCATT+TGG - chr2_1:68016456-68016475 None:intergenic 20.0%
!! AATGATGTTATATTATCTAC+GGG - chr2_1:68016577-68016596 None:intergenic 20.0%
!!! TGTTGTACTTTGAAATAAAA+TGG + chr2_1:68016639-68016658 Msa0220010:three_prime_UTR 20.0%
! AATTTGTGTGACATATAGAT+TGG + chr2_1:68013854-68013873 Msa0220010:intron 25.0%
! ATTTGTGTGACATATAGATT+GGG + chr2_1:68013855-68013874 Msa0220010:intron 25.0%
!!! TTTTAGTTTTTGTGCTATCT+TGG + chr2_1:68013882-68013901 Msa0220010:intron 25.0%
! CATCAAACTTCATGAAAAAT+TGG + chr2_1:68014042-68014061 Msa0220010:intron 25.0%
! TTCATGAAAAATTGGGTAAT+AGG + chr2_1:68014050-68014069 Msa0220010:intron 25.0%
! AGAGGATATTGATATAACTT+AGG + chr2_1:68014151-68014170 Msa0220010:intron 25.0%
! TTATCTATCCATTAAGTGTA+CGG - chr2_1:68014260-68014279 None:intergenic 25.0%
!! TAGTGAAGAATGATTTTGTT+GGG - chr2_1:68014299-68014318 None:intergenic 25.0%
!! TTAGTGAAGAATGATTTTGT+TGG - chr2_1:68014300-68014319 None:intergenic 25.0%
! AGAAGATTGCTATATATGAT+AGG - chr2_1:68014397-68014416 None:intergenic 25.0%
!!! GATTTTAAGAAAAGAAAACG+AGG - chr2_1:68014421-68014440 None:intergenic 25.0%
! GAATTATCCTTCATTATTCT+TGG - chr2_1:68014796-68014815 None:intergenic 25.0%
! TTTATGATATCACCTAAGAT+TGG + chr2_1:68014823-68014842 Msa0220010:intron 25.0%
! AATTTCACATGTATAAAGAG+TGG - chr2_1:68014946-68014965 None:intergenic 25.0%
! ACTGTATACTTTAACATAAG+AGG - chr2_1:68015281-68015300 None:intergenic 25.0%
! GTAATTCAAACATTTCATAG+AGG - chr2_1:68015338-68015357 None:intergenic 25.0%
!! TACTAAAAGAAATTTTGTCG+TGG + chr2_1:68015819-68015838 Msa0220010:intron 25.0%
!! TCAACTCTCCTAAAATTTTA+AGG - chr2_1:68015952-68015971 None:intergenic 25.0%
!!! TATAAGAGTCTTTTTTATGG+TGG - chr2_1:68016109-68016128 None:intergenic 25.0%
! AACATTTCTCCAAGTTTATT+GGG - chr2_1:68016210-68016229 None:intergenic 25.0%
! TAACATTTCTCCAAGTTTAT+TGG - chr2_1:68016211-68016230 None:intergenic 25.0%
! ATGAGCTGTCTATTATAAAT+GGG - chr2_1:68016425-68016444 None:intergenic 25.0%
! TATGAGCTGTCTATTATAAA+TGG - chr2_1:68016426-68016445 None:intergenic 25.0%
! ATATAGAATCTTCATTTGGA+GGG - chr2_1:68016452-68016471 None:intergenic 25.0%
! AATATAGAATCTTCATTTGG+AGG - chr2_1:68016453-68016472 None:intergenic 25.0%
! AATAAATCGTTACTGTAATG+TGG + chr2_1:68016529-68016548 Msa0220010:exon 25.0%
! ATAAATCGTTACTGTAATGT+GGG + chr2_1:68016530-68016549 Msa0220010:exon 25.0%
!! TCCATTTTTGTCACAATAAG+GGG - chr2_1:68013709-68013728 None:intergenic 30.0%
!! GTCCATTTTTGTCACAATAA+GGG - chr2_1:68013710-68013729 None:intergenic 30.0%
!! AGTCCATTTTTGTCACAATA+AGG - chr2_1:68013711-68013730 None:intergenic 30.0%
!! ATTGTGACAAAAATGGACTA+AGG + chr2_1:68013712-68013731 Msa0220010:CDS 30.0%
AGTTGATTGCTTATGTAACT+AGG + chr2_1:68013766-68013785 Msa0220010:CDS 30.0%
ATTGCTTATGTAACTAGGTA+TGG + chr2_1:68013771-68013790 Msa0220010:CDS 30.0%
AGACATTCGATTGATATGAT+AGG - chr2_1:68014113-68014132 None:intergenic 30.0%
TCAATATCCTCTCTTGATTT+CGG - chr2_1:68014143-68014162 None:intergenic 30.0%
TATCTATCCATTAAGTGTAC+GGG - chr2_1:68014259-68014278 None:intergenic 30.0%
ATAAAATAATCAGAGGGTTC+TGG - chr2_1:68014475-68014494 None:intergenic 30.0%
! TTTTGTGGATGTAAGGAAAA+GGG - chr2_1:68014580-68014599 None:intergenic 30.0%
! TTTTTGTGGATGTAAGGAAA+AGG - chr2_1:68014581-68014600 None:intergenic 30.0%
! CATTGTAATGTTACTTGAGA+TGG - chr2_1:68014625-68014644 None:intergenic 30.0%
CACTCAAGAGTTACAAATAA+CGG + chr2_1:68014690-68014709 Msa0220010:intron 30.0%
ATGTGAAATATGCCAATCTT+AGG - chr2_1:68014838-68014857 None:intergenic 30.0%
TCAAAACTCTCTCTATTTGA+AGG + chr2_1:68014860-68014879 Msa0220010:intron 30.0%
! TACATGTGAAATTTTCCTAG+TGG + chr2_1:68014953-68014972 Msa0220010:intron 30.0%
! TTTTCCTAGTGGCAAAATAT+AGG + chr2_1:68014964-68014983 Msa0220010:intron 30.0%
!! AAAGAGTATGTTCTAAGATG+TGG - chr2_1:68014995-68015014 None:intergenic 30.0%
! TATCTATTATTGGTGCTTGT+TGG + chr2_1:68015127-68015146 Msa0220010:intron 30.0%
!! TTTTGATAACAAGTGCTCTA+AGG + chr2_1:68015779-68015798 Msa0220010:intron 30.0%
! TTTGATAACAAGTGCTCTAA+GGG + chr2_1:68015780-68015799 Msa0220010:intron 30.0%
ATGATTTCTGCAAATTTACC+AGG + chr2_1:68016048-68016067 Msa0220010:CDS 30.0%
TGATTTCTGCAAATTTACCA+GGG + chr2_1:68016049-68016068 Msa0220010:CDS 30.0%
ATAACGAGATAAAGAACTAC+TGG + chr2_1:68016079-68016098 Msa0220010:CDS 30.0%
TTCAAAAAATCACCCTACAA+TGG + chr2_1:68016179-68016198 Msa0220010:CDS 30.0%
! TATTGGGTTTTTCCATTGTA+GGG - chr2_1:68016194-68016213 None:intergenic 30.0%
! TTATTGGGTTTTTCCATTGT+AGG - chr2_1:68016195-68016214 None:intergenic 30.0%
ATGGAAAAACCCAATAAACT+TGG + chr2_1:68016198-68016217 Msa0220010:CDS 30.0%
TCAAAGTCATCAAAAAGAGA+AGG - chr2_1:68016348-68016367 None:intergenic 30.0%
!! CAGTAACGATTTATTTTCCA+TGG - chr2_1:68016524-68016543 None:intergenic 30.0%
TAAATCGTTACTGTAATGTG+GGG + chr2_1:68016531-68016550 Msa0220010:exon 30.0%
CAATTCTTAGTATGAGTGTG+TGG - chr2_1:68013634-68013653 None:intergenic 35.0%
CACACACTCATACTAAGAAT+TGG + chr2_1:68013632-68013651 Msa0220010:five_prime_UTR 35.0%
GTTCTCACCATATTCTCTAT+AGG - chr2_1:68013687-68013706 None:intergenic 35.0%
ACCCCTTATTGTGACAAAAA+TGG + chr2_1:68013705-68013724 Msa0220010:CDS 35.0%
!! GACAAAAATGGACTAAGGAA+AGG + chr2_1:68013717-68013736 Msa0220010:CDS 35.0%
! ATCAACTTTTTGTCTTCCTC+AGG - chr2_1:68013753-68013772 None:intergenic 35.0%
!! TTTTGTTTGCAGGTCTTGAA+AGG + chr2_1:68013930-68013949 Msa0220010:intron 35.0%
TAAGGTGGTTGAACTATCTA+AGG + chr2_1:68013972-68013991 Msa0220010:intron 35.0%
TAAGGCCAGATATCAAAAGA+GGG + chr2_1:68013990-68014009 Msa0220010:intron 35.0%
! AAGTTCCCTCTTTTGATATC+TGG - chr2_1:68013998-68014017 None:intergenic 35.0%
ATTTACACCCGTACACTTAA+TGG + chr2_1:68014249-68014268 Msa0220010:intron 35.0%
TAAAGTTTGAACCCTGTGTT+AGG + chr2_1:68014530-68014549 Msa0220010:intron 35.0%
!! GAAGTGTTTTTGTGGATGTA+AGG - chr2_1:68014587-68014606 None:intergenic 35.0%
! TCTAGAGTGGTACACAATTT+CGG - chr2_1:68014663-68014682 None:intergenic 35.0%
TTATTCTTGGGTGATCATGT+GGG - chr2_1:68014783-68014802 None:intergenic 35.0%
ATTATTCTTGGGTGATCATG+TGG - chr2_1:68014784-68014803 None:intergenic 35.0%
TGATCACCCAAGAATAATGA+AGG + chr2_1:68014786-68014805 Msa0220010:intron 35.0%
TCACATGTATAAAGAGTGGT+GGG - chr2_1:68014942-68014961 None:intergenic 35.0%
TTCACATGTATAAAGAGTGG+TGG - chr2_1:68014943-68014962 None:intergenic 35.0%
! CAAACCTATATTTTGCCACT+AGG - chr2_1:68014971-68014990 None:intergenic 35.0%
! ACAAACAATTCGTTTGGGAT+TGG + chr2_1:68015032-68015051 Msa0220010:intron 35.0%
! CAAACAATTCGTTTGGGATT+GGG + chr2_1:68015033-68015052 Msa0220010:intron 35.0%
! AAACAATTCGTTTGGGATTG+GGG + chr2_1:68015034-68015053 Msa0220010:intron 35.0%
AATAAGTCAAACGCTAAACG+TGG + chr2_1:68016132-68016151 Msa0220010:CDS 35.0%
ATCCTCTTGCATAGCATTAA+TGG + chr2_1:68016290-68016309 Msa0220010:CDS 35.0%
ATCCATTAATGCTATGCAAG+AGG - chr2_1:68016295-68016314 None:intergenic 35.0%
! TGACTTTGACCTTCCTTTTA+TGG + chr2_1:68016359-68016378 Msa0220010:CDS 35.0%
TGTATGCATCCATAAAAGGA+AGG - chr2_1:68016371-68016390 None:intergenic 35.0%
! TCCTTTTATGGATGCATACA+TGG + chr2_1:68016371-68016390 Msa0220010:CDS 35.0%
TCCATGTATGCATCCATAAA+AGG - chr2_1:68016375-68016394 None:intergenic 35.0%
AGACTGTGAGTGAAAATTTC+TGG + chr2_1:68016394-68016413 Msa0220010:CDS 35.0%
AAATCGTTACTGTAATGTGG+GGG + chr2_1:68016532-68016551 Msa0220010:exon 35.0%
CATATTCTCTATAGGCTCGT+TGG - chr2_1:68013679-68013698 None:intergenic 40.0%
CAACGAGCCTATAGAGAATA+TGG + chr2_1:68013677-68013696 Msa0220010:exon 40.0%
ATGTAACTAGGTATGGCTGT+TGG + chr2_1:68013778-68013797 Msa0220010:CDS 40.0%
CGACAACTACCTAAATTTGC+AGG + chr2_1:68013807-68013826 Msa0220010:CDS 40.0%
!! TCACGAGAGATTTTGTTTGC+AGG + chr2_1:68013920-68013939 Msa0220010:intron 40.0%
CTAAGGCCAGATATCAAAAG+AGG + chr2_1:68013989-68014008 Msa0220010:intron 40.0%
TCTTTGACCGAAATCAAGAG+AGG + chr2_1:68014133-68014152 Msa0220010:intron 40.0%
TGATAGGCAAGCAATGAGAA+GGG - chr2_1:68014381-68014400 None:intergenic 40.0%
ATGATAGGCAAGCAATGAGA+AGG - chr2_1:68014382-68014401 None:intergenic 40.0%
TTAGAGTTCTCGAGCTTCTT+GGG - chr2_1:68014513-68014532 None:intergenic 40.0%
! TTTAGAGTTCTCGAGCTTCT+TGG - chr2_1:68014514-68014533 None:intergenic 40.0%
!! TGAGTGAGAGTATTCTAGAG+TGG - chr2_1:68014676-68014695 None:intergenic 40.0%
TATTCTTGGGTGATCATGTG+GGG - chr2_1:68014782-68014801 None:intergenic 40.0%
ACTCTCTCTATTTGAAGGAG+AGG + chr2_1:68014865-68014884 Msa0220010:intron 40.0%
CTCTCTCTATTTGAAGGAGA+GGG + chr2_1:68014866-68014885 Msa0220010:intron 40.0%
! AACAATTCGTTTGGGATTGG+GGG + chr2_1:68015035-68015054 Msa0220010:intron 40.0%
TTGTTTGATCCTAGGAGCAA+GGG + chr2_1:68015060-68015079 Msa0220010:intron 40.0%
!! AGATGGTGGACTCGTAATAT+TGG - chr2_1:68016250-68016269 None:intergenic 40.0%
CTTGTAGATGGTTGTGAAGA+TGG - chr2_1:68016267-68016286 None:intergenic 40.0%
CAAAGTTCTGCATCGTATAC+AGG - chr2_1:68016498-68016517 None:intergenic 40.0%
CTGTATACGATGCAGAACTT+TGG + chr2_1:68016496-68016515 Msa0220010:CDS 40.0%
! ATGGACTAAGGAAAGGCACA+TGG + chr2_1:68013724-68013743 Msa0220010:CDS 45.0%
CTAGGTATGGCTGTTGGAAT+TGG + chr2_1:68013784-68013803 Msa0220010:CDS 45.0%
TTTGCAGGTCTTGAAAGGTG+TGG + chr2_1:68013935-68013954 Msa0220010:intron 45.0%
! TTGCAGGTCTTGAAAGGTGT+GGG + chr2_1:68013936-68013955 Msa0220010:intron 45.0%
GTGGGAAGAGTTGTAGACTA+AGG + chr2_1:68013954-68013973 Msa0220010:CDS 45.0%
GGAAGAGTTGTAGACTAAGG+TGG + chr2_1:68013957-68013976 Msa0220010:intron 45.0%
TCTCGAGCTTCTTGGGTTAA+TGG - chr2_1:68014506-68014525 None:intergenic 45.0%
GGAGTCATGATCCTAACACA+GGG - chr2_1:68014544-68014563 None:intergenic 45.0%
!! AAGGAAAAGGGTGTCGACAA+TGG - chr2_1:68014568-68014587 None:intergenic 45.0%
ATGATCACCCACACCTCTAT+AGG + chr2_1:68014735-68014754 Msa0220010:intron 45.0%
! ACCATGTCCTATAGAGGTGT+GGG - chr2_1:68014745-68014764 None:intergenic 45.0%
AACCATGTCCTATAGAGGTG+TGG - chr2_1:68014746-68014765 None:intergenic 45.0%
ACACCTCTATAGGACATGGT+TGG + chr2_1:68014745-68014764 Msa0220010:intron 45.0%
TCTCCAACCATGTCCTATAG+AGG - chr2_1:68014751-68014770 None:intergenic 45.0%
! CTATTTGAAGGAGAGGGTAC+TGG + chr2_1:68014872-68014891 Msa0220010:intron 45.0%
CTTGTTTGATCCTAGGAGCA+AGG + chr2_1:68015059-68015078 Msa0220010:intron 45.0%
TGTTTGATCCTAGGAGCAAG+GGG + chr2_1:68015061-68015080 Msa0220010:intron 45.0%
ATCTCGTTATCTGTTCTCCC+TGG - chr2_1:68016069-68016088 None:intergenic 45.0%
GTAGATGGTTGTGAAGATGG+TGG - chr2_1:68016264-68016283 None:intergenic 45.0%
CAAGAGGATGCACTTGTAGA+TGG - chr2_1:68016279-68016298 None:intergenic 45.0%
CGGAGTCATGATCCTAACAC+AGG - chr2_1:68014545-68014564 None:intergenic 50.0%
!! GAAAAGGGTGTCGACAATGG+CGG - chr2_1:68014565-68014584 None:intergenic 50.0%
ACCCACACCTCTATAGGACA+TGG + chr2_1:68014741-68014760 Msa0220010:intron 50.0%
!! TGGGGGTCTTGTTTGATCCT+AGG + chr2_1:68015052-68015071 Msa0220010:intron 50.0%
GGTGGGTGTCTTGTGGTATT+GGG + chr2_1:68015082-68015101 Msa0220010:intron 50.0%
!! GATGCAGAACTTTGGAGCCA+TGG + chr2_1:68016504-68016523 Msa0220010:CDS 50.0%
! GAAAGGCACATGGACACCTG+AGG + chr2_1:68013734-68013753 Msa0220010:CDS 55.0%
TGGGTGATCATGTGGGGTTG+AGG - chr2_1:68014776-68014795 None:intergenic 55.0%
TTGATCCTAGGAGCAAGGGG+TGG + chr2_1:68015064-68015083 Msa0220010:intron 55.0%
TGATCCTAGGAGCAAGGGGT+GGG + chr2_1:68015065-68015084 Msa0220010:intron 55.0%
GGGTGGGTGTCTTGTGGTAT+TGG + chr2_1:68015081-68015100 Msa0220010:intron 55.0%
AGCAAGGGGTGGGTGTCTTG+TGG + chr2_1:68015075-68015094 Msa0220010:intron 60.0%
GACACCCACCCCTTGCTCCT+AGG - chr2_1:68015072-68015091 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 68013548 68016705 68013548 ID=Msa0220010;Name=Msa0220010
chr2_1 mRNA 68013548 68016705 68013548 ID=Msa0220010-mRNA-1;Parent=Msa0220010;Name=Msa0220010-mRNA-1;_AED=0.34;_eAED=0.34;_QI=148|0.5|0.66|1|1|1|3|172|219
chr2_1 exon 68013548 68013828 68013548 ID=Msa0220010-mRNA-1:exon:19257;Parent=Msa0220010-mRNA-1
chr2_1 exon 68013942 68013975 68013942 ID=Msa0220010-mRNA-1:exon:19258;Parent=Msa0220010-mRNA-1
chr2_1 exon 68016041 68016705 68016041 ID=Msa0220010-mRNA-1:exon:19259;Parent=Msa0220010-mRNA-1
chr2_1 five_prime_UTR 68013548 68013695 68013548 ID=Msa0220010-mRNA-1:five_prime_utr;Parent=Msa0220010-mRNA-1
chr2_1 CDS 68013696 68013828 68013696 ID=Msa0220010-mRNA-1:cds;Parent=Msa0220010-mRNA-1
chr2_1 CDS 68013942 68013975 68013942 ID=Msa0220010-mRNA-1:cds;Parent=Msa0220010-mRNA-1
chr2_1 CDS 68016041 68016533 68016041 ID=Msa0220010-mRNA-1:cds;Parent=Msa0220010-mRNA-1
chr2_1 three_prime_UTR 68016534 68016705 68016534 ID=Msa0220010-mRNA-1:three_prime_utr;Parent=Msa0220010-mRNA-1
Gene Sequence

>Msa0220010

ATGGTGAGAACCCCTTATTGTGACAAAAATGGACTAAGGAAAGGCACATGGACACCTGAGGAAGACAAAAAGTTGATTGCTTATGTAACTAGGTATGGCTGTTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTGAAAGGTGTGGGAAGAGTTGTAGACTAAGATGGACTATGATTTCTGCAAATTTACCAGGGAGAACAGATAACGAGATAAAGAACTACTGGCACACCACCATAAAAAAGACTCTTATAAAGAATAAGTCAAACGCTAAACGTGGAACGAAAAAAGCCAAAGACTCAAATTCAAAAAATCACCCTACAATGGAAAAACCCAATAAACTTGGAGAAATGTTAGAGAACAACAGTGATTCCAATATTACGAGTCCACCATCTTCACAACCATCTACAAGTGCATCCTCTTGCATAGCATTAATGGATACTGCAGCTACTACAATATCATATGAAAATCCTTCTCTTTTTGATGACTTTGACCTTCCTTTTATGGATGCATACATGGAGACTGTGAGTGAAAATTTCTGGACAGACCCATTTATAATAGACAGCTCATATGTCCCTCCAAATGAAGATTCTATATTACTTGAACATGAATACTTTAGTCCTGTATACGATGCAGAACTTTGGAGCCATGGAAAATAA
Protein sequence

>Msa0220010

MVRTPYCDKNGLRKGTWTPEEDKKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWTMISANLPGRTDNEIKNYWHTTIKKTLIKNKSNAKRGTKKAKDSNSKNHPTMEKPNKLGEMLENNSDSNITSPPSSQPSTSASSCIALMDTAATTISYENPSLFDDFDLPFMDAYMETVSENFWTDPFIIDSSYVPPNEDSILLEHEYFSPVYDAELWSHGK*