AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0326540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326540 MtrunA17_Chr2g0305211 94.391 517 28 1 1 516 1 517 0.0 1028
Msa0326540 MtrunA17_Chr2g0305231 94.391 517 28 1 1 516 1 517 0.0 1028
Msa0326540 MtrunA17_Chr2g0304721 78.917 517 105 2 1 516 1 514 0.0 853
Msa0326540 MtrunA17_Chr2g0304651 75.242 517 125 2 1 516 1 515 0.0 813
Msa0326540 MtrunA17_Chr2g0301661 38.791 513 303 8 5 513 14 519 1.23e-122 369
Msa0326540 MtrunA17_Chr4g0070101 40.080 499 285 11 21 513 29 519 7.63e-121 365
Msa0326540 MtrunA17_Chr2g0301471 39.105 514 302 8 4 513 13 519 1.75e-120 364
Msa0326540 MtrunA17_Chr4g0070111 38.869 283 168 4 233 514 1 279 8.83e-67 217
Msa0326540 MtrunA17_Chr2g0286701 37.447 235 142 4 1 233 10 241 4.92e-55 187
Msa0326540 MtrunA17_Chr4g0070121 43.478 207 115 2 21 225 29 235 2.56e-51 175
Msa0326540 MtrunA17_Chr2g0286681 40.171 117 68 2 272 388 4 118 4.55e-22 91.7
Msa0326540 MtrunA17_Chr7g0268621 27.985 268 153 11 2 265 3 234 1.04e-16 82.0
Msa0326540 MtrunA17_Chr1g0182991 25.668 374 214 18 7 376 27 340 2.06e-16 81.6
Msa0326540 MtrunA17_Chr8g0352461 27.381 252 126 9 5 232 4 222 2.76e-16 81.3
Msa0326540 MtrunA17_Chr8g0352481 25.397 252 130 8 5 232 4 221 2.91e-15 78.2
Msa0326540 MtrunA17_Chr2g0286671 36.634 101 62 2 414 513 1 100 8.28e-15 70.5
Msa0326540 MtrunA17_Chr1g0169111 26.385 379 210 20 6 376 103 420 8.45e-14 73.9
Msa0326540 MtrunA17_Chr4g0025641 29.646 226 121 11 1 223 12 202 2.18e-13 70.1
Msa0326540 MtrunA17_Chr3g0091441 26.587 252 136 8 3 229 11 238 2.26e-12 69.3
Msa0326540 MtrunA17_Chr3g0125691 24.346 382 214 16 1 374 3 317 8.07e-12 67.0
Msa0326540 MtrunA17_Chr5g0412881 23.810 378 219 16 2 374 3 316 1.03e-11 66.6
Msa0326540 MtrunA17_Chr3g0139441 25.105 239 135 9 6 239 40 239 2.07e-11 65.9
Msa0326540 MtrunA17_Chr3g0125701 23.810 399 228 16 1 390 3 334 3.83e-11 65.1
Msa0326540 MtrunA17_Chr3g0125711 23.810 399 228 16 1 390 3 334 3.90e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326540 AT1G19250.1 38.760 516 303 10 4 514 12 519 7.97e-129 386
Msa0326540 AT5G45180.1 36.308 493 259 13 4 490 12 455 2.75e-103 318
Msa0326540 AT1G62560.2 25.197 254 131 10 3 229 11 232 1.49e-13 72.8
Msa0326540 AT1G62560.1 25.197 254 131 10 3 229 11 232 1.65e-13 73.2
Msa0326540 AT4G28720.1 26.247 381 208 20 6 376 26 343 2.31e-13 72.4
Msa0326540 AT1G62620.2 25.000 252 135 9 4 229 12 235 2.92e-13 72.0
Msa0326540 AT1G62620.1 25.000 252 135 9 4 229 12 235 3.46e-13 72.0
Msa0326540 AT1G63370.2 25.000 252 135 7 4 229 12 235 5.24e-13 70.9
Msa0326540 AT1G63370.1 25.000 252 135 7 4 229 12 235 6.33e-13 71.2
Msa0326540 AT1G65860.1 22.327 318 173 11 3 279 11 295 2.55e-12 69.3
Msa0326540 AT1G21430.1 26.005 373 209 14 5 374 9 317 6.37e-12 67.8
Msa0326540 AT4G32540.1 24.138 377 213 17 7 376 23 333 1.09e-11 67.4
Msa0326540 AT4G32540.2 25.403 248 139 11 7 251 23 227 2.69e-11 65.9
Msa0326540 AT1G12200.1 25.197 254 135 7 3 229 12 237 3.62e-11 65.9
Msa0326540 AT1G12200.2 25.197 254 135 7 3 229 12 237 3.71e-11 65.5

Find 124 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTACCTTTAAAGATTTC+TGG 0.118162 2_4:+36655981 None:intergenic
TATATTTATTGCTACAATTC+TGG 0.199707 2_4:+36652481 None:intergenic
TGCAAATATGCTCTACAAAT+TGG 0.214406 2_4:-36657067 Msa0326540:CDS
GGGCTTATCTTCTCCATTAA+TGG 0.222471 2_4:+36654508 None:intergenic
AAAGAAGGTTTAACCATTAA+TGG 0.223564 2_4:-36654521 Msa0326540:CDS
GGAAGTCTTGTTTGTTAGTT+TGG 0.241397 2_4:+36656969 None:intergenic
AAATAAGTGGGGTGGGGTGG+GGG 0.249747 2_4:-36652535 Msa0326540:three_prime_UTR
TTGTGATTTCTTTATATTGA+TGG 0.268932 2_4:+36654559 None:intergenic
ACGCTTAATATCCTCTTATA+TGG 0.270319 2_4:+36657173 None:intergenic
TGTTATGAAACTAAAGAAAT+AGG 0.275402 2_4:+36657200 None:intergenic
TGGAAGTCCATTTGGTTCTA+AGG 0.280378 2_4:-36656750 Msa0326540:CDS
AATAACTAGGTCAGCTTCTT+GGG 0.283161 2_4:+36654487 None:intergenic
AAAATAAGTGGGGTGGGGTG+GGG 0.284960 2_4:-36652536 Msa0326540:three_prime_UTR
AGGTAAAGTTATGCATTCTT+TGG 0.285374 2_4:-36655967 Msa0326540:CDS
TCAATGGCTGGCGCATCTTT+TGG 0.285635 2_4:-36652876 Msa0326540:CDS
AAATGAAGTCATGGGAATTA+TGG 0.290096 2_4:-36656781 Msa0326540:CDS
GAAACCAGTGTGTAGTTCTT+TGG 0.303585 2_4:+36655686 None:intergenic
TTACATCTTCTTGTAATTGT+AGG 0.305849 2_4:-36652574 Msa0326540:three_prime_UTR
ACAAAATAAGTGGGGTGGGG+TGG 0.309757 2_4:-36652538 Msa0326540:three_prime_UTR
ATTCCACAATTGGCAATAAT+AGG 0.330890 2_4:-36652944 Msa0326540:CDS
ATGATGGCATTGGTGGAATA+TGG 0.334253 2_4:-36657018 Msa0326540:CDS
GAATAACTAGGTCAGCTTCT+TGG 0.335174 2_4:+36654486 None:intergenic
CATGCATTACGTGTGGGATA+TGG 0.336927 2_4:-36652754 Msa0326540:CDS
AATAAGTGGGGTGGGGTGGG+GGG 0.340258 2_4:-36652534 Msa0326540:three_prime_UTR
TCTTGCACTTGTTGATTACT+TGG 0.340440 2_4:+36656902 None:intergenic
AGCTGCAGTCTTGTTGTCTA+AGG 0.341399 2_4:+36655935 None:intergenic
GACATTGCGGGCATTAATCT+TGG 0.343163 2_4:-36655652 Msa0326540:CDS
CTTTACCTTTAAAGATTTCT+GGG 0.345088 2_4:+36655982 None:intergenic
CAAAATAAGTGGGGTGGGGT+GGG 0.348110 2_4:-36652537 Msa0326540:three_prime_UTR
AAAGGCCCAGAAATCTTTAA+AGG 0.357841 2_4:-36655987 Msa0326540:CDS
CCCATGGAAAATCTGTAAAC+TGG 0.363372 2_4:+36656948 None:intergenic
ATTCTTGCCACGGGATATAA+AGG 0.367862 2_4:-36654467 Msa0326540:CDS
ATCTTGAAGAAAACTGTAAT+CGG 0.368612 2_4:+36654643 None:intergenic
TCATTGATATTGATTATGTT+GGG 0.373374 2_4:-36656817 Msa0326540:CDS
TTGGAATTGAATCTTATGTA+TGG 0.382205 2_4:+36656842 None:intergenic
GCTGAGCTATTTGAACCATA+TGG 0.382963 2_4:-36652671 Msa0326540:CDS
AAGTTTCAGTATAAAAGAAA+TGG 0.388381 2_4:-36657137 Msa0326540:exon
TTGTTTGTTAGTTTGGAGTT+TGG 0.394924 2_4:+36656976 None:intergenic
ATACTGAAACTTATAATAGT+TGG 0.395748 2_4:+36657148 None:intergenic
GCTATTTGCAGTAATATTGA+TGG 0.401435 2_4:+36652506 None:intergenic
GTCATTGATATTGATTATGT+TGG 0.404807 2_4:-36656818 Msa0326540:CDS
CTTTGCATTGGAAAGTATAG+TGG 0.412036 2_4:-36656041 Msa0326540:CDS
AATTTGTAGAGCATATTTGC+AGG 0.413362 2_4:+36657069 None:intergenic
TTGTTGAAACATATTTGAAA+TGG 0.419853 2_4:-36654697 Msa0326540:CDS
ATGCCCGCAATGTCAAAATC+TGG 0.420705 2_4:+36655661 None:intergenic
CATTTGGTTCTAAGGGAACT+TGG 0.423541 2_4:-36656742 Msa0326540:CDS
AGCTTTAGCTTCTGCAAAGA+AGG 0.430511 2_4:-36654536 Msa0326540:CDS
TCATCAGATTCGTAGACAAT+TGG 0.431340 2_4:+36657037 None:intergenic
TGAAAATGTGGGAAGAGAAC+AGG 0.433069 2_4:-36652808 Msa0326540:CDS
AGAGTTACAATAGTAGGCTC+AGG 0.434337 2_4:-36655894 Msa0326540:CDS
ATAATCAATATCAATGACTT+TGG 0.438062 2_4:+36656823 None:intergenic
TGGGAATTATGGAGTGGTAA+TGG 0.443970 2_4:-36656770 Msa0326540:CDS
TTGAAATCAGTGGGGCCATA+TGG 0.449343 2_4:+36652656 None:intergenic
AAGTTTGTCATTCTTTGCAT+TGG 0.451719 2_4:-36656053 Msa0326540:CDS
AACAAGAGAGTTACAATAGT+AGG 0.452094 2_4:-36655900 Msa0326540:CDS
TATTAGTATTCATTCACTTA+CGG 0.457548 2_4:+36652625 None:intergenic
AGTGGTAATGGAAGTCCATT+TGG 0.462695 2_4:-36656758 Msa0326540:CDS
GGAAGTCCATTTGGTTCTAA+GGG 0.467978 2_4:-36656749 Msa0326540:CDS
TATGGCCCCACTGATTTCAA+TGG 0.474989 2_4:-36652653 Msa0326540:CDS
GTATATACAAACCTGTAGAT+AGG 0.475274 2_4:+36654368 None:intergenic
GGCCACTTTACTTTCACCAT+TGG 0.477134 2_4:-36655557 Msa0326540:intron
GAATCTTATGTATGGAATGA+TGG 0.480663 2_4:+36656850 None:intergenic
TCACCCTCGAATTCCACAAT+TGG 0.481469 2_4:-36652954 Msa0326540:CDS
TATCCTATTATTGCCAATTG+TGG 0.489403 2_4:+36652941 None:intergenic
AATGTTGCAATTGTTGGGGC+AGG 0.496768 2_4:-36657109 Msa0326540:CDS
TATAGTAAGTACAAAATAAG+TGG 0.497166 2_4:-36652548 Msa0326540:three_prime_UTR
GACAAGCCATTGAAATCAGT+GGG 0.509463 2_4:+36652647 None:intergenic
AAGTACAAAATAAGTGGGGT+GGG 0.510534 2_4:-36652542 Msa0326540:three_prime_UTR
CTCATGAAGAAATGAAGTCA+TGG 0.511087 2_4:-36656790 Msa0326540:CDS
ACTCAACGGTTCCTATCTAC+AGG 0.514369 2_4:-36654379 Msa0326540:intron
ATATCTCTACATGTCGAGCT+GGG 0.514908 2_4:-36654622 Msa0326540:CDS
AGCTGCCACTGAAGAAGTAC+GGG 0.515558 2_4:-36654673 Msa0326540:CDS
CATAACATAAACCATATAAG+AGG 0.518015 2_4:-36657184 Msa0326540:five_prime_UTR
GAAATTCTTAGTATCTTCTA+CGG 0.519004 2_4:+36656712 None:intergenic
TGGAAAATGATGTGAAAATG+TGG 0.519496 2_4:-36652820 Msa0326540:CDS
GATATCTCTACATGTCGAGC+TGG 0.519980 2_4:-36654623 Msa0326540:CDS
ATAGTAAGTACAAAATAAGT+GGG 0.521051 2_4:-36652547 Msa0326540:three_prime_UTR
AAGTGGCCACAAGGCTAAGT+AGG 0.524274 2_4:+36655572 None:intergenic
TCTTGAAGAAAACTGTAATC+GGG 0.524939 2_4:+36654644 None:intergenic
CTAAGTAGGAATGGTTCTCC+AGG 0.528761 2_4:+36655586 None:intergenic
GAATCTGATGATGGCATTGG+TGG 0.530274 2_4:-36657025 Msa0326540:CDS
ATTGCCAATTGTGGAATTCG+AGG 0.531426 2_4:+36652950 None:intergenic
AAGCTGCCACTGAAGAAGTA+CGG 0.532930 2_4:-36654674 Msa0326540:CDS
CAAGTTCCCTTAGAACCAAA+TGG 0.541301 2_4:+36656743 None:intergenic
AAAGTAGAGAGAAATAGAGA+AGG 0.543386 2_4:+36657232 None:intergenic
ATTGTCTACGAATCTGATGA+TGG 0.545835 2_4:-36657034 Msa0326540:CDS
ATTGTTGGGGCAGGAATAAG+TGG 0.555531 2_4:-36657100 Msa0326540:CDS
TTGCCAATTGTGGAATTCGA+GGG 0.558750 2_4:+36652951 None:intergenic
ACTTCCTAGCATAAGAGAGA+TGG 0.562419 2_4:-36652840 Msa0326540:CDS
CATTGATATTGATTATGTTG+GGG 0.562755 2_4:-36656816 Msa0326540:CDS
TTGGTCACCTTTATATCCCG+TGG 0.565549 2_4:+36654460 None:intergenic
TAAGTACAAAATAAGTGGGG+TGG 0.571482 2_4:-36652543 Msa0326540:three_prime_UTR
TCATGAAGAAATGAAGTCAT+GGG 0.573176 2_4:-36656789 Msa0326540:CDS
GCTGAATGTGCAAATGCAAA+TGG 0.573735 2_4:-36655849 Msa0326540:intron
TGACCTAGTTATTCTTGCCA+CGG 0.575160 2_4:-36654477 Msa0326540:CDS
TACCAATGGTGAAAGTAAAG+TGG 0.578127 2_4:+36655555 None:intergenic
GCCACAAGGCTAAGTAGGAA+TGG 0.579646 2_4:+36655577 None:intergenic
CTAATGAAATGAGATGTCAA+TGG 0.582072 2_4:-36652892 Msa0326540:CDS
CAAGATCATGCATTACGTGT+GGG 0.582997 2_4:-36652760 Msa0326540:CDS
GCCACTGAAGAAGTACGGGC+TGG 0.586016 2_4:-36654669 Msa0326540:CDS
GACCTAGTTATTCTTGCCAC+GGG 0.588033 2_4:-36654476 Msa0326540:CDS
ATAACTAGGTCAGCTTCTTG+GGG 0.588569 2_4:+36654488 None:intergenic
TCAAGATCATGCATTACGTG+TGG 0.593649 2_4:-36652761 Msa0326540:CDS
GTACTAAAAGCTCCGCAAAA+CGG 0.593919 2_4:+36655614 None:intergenic
GAGTTACAATAGTAGGCTCA+GGG 0.602052 2_4:-36655893 Msa0326540:CDS
ACCATTCCTACTTAGCCTTG+TGG 0.606013 2_4:-36655578 Msa0326540:CDS
TGAAATGAGATGTCAATGGC+TGG 0.610788 2_4:-36652888 Msa0326540:CDS
TACGAATCTGATGATGGCAT+TGG 0.612809 2_4:-36657028 Msa0326540:CDS
GTGAAAGTAAAGTGGCCACA+AGG 0.620197 2_4:+36655563 None:intergenic
ATCCCGTGGCAAGAATAACT+AGG 0.620371 2_4:+36654474 None:intergenic
ACCAGCCCGTACTTCTTCAG+TGG 0.620675 2_4:+36654668 None:intergenic
TTTGTAAATTCAGGTTCACA+AGG 0.623646 2_4:-36656078 Msa0326540:intron
GGAAAATGATGTGAAAATGT+GGG 0.624056 2_4:-36652819 Msa0326540:CDS
GGACAAGCCATTGAAATCAG+TGG 0.627728 2_4:+36652646 None:intergenic
AGTACAAAATAAGTGGGGTG+GGG 0.631400 2_4:-36652541 Msa0326540:three_prime_UTR
GTTCTTTGGATAATTGTGCA+AGG 0.631927 2_4:+36655700 None:intergenic
CAACGAATCAGCAGACTCAA+CGG 0.636407 2_4:-36654393 Msa0326540:CDS
TATCTCTACATGTCGAGCTG+GGG 0.655759 2_4:-36654621 Msa0326540:CDS
AAGTCATGGGAATTATGGAG+TGG 0.662418 2_4:-36656776 Msa0326540:CDS
TTCATATTTACATACCTCGG+TGG 0.678741 2_4:+36656688 None:intergenic
TTATCCAAAGAACTACACAC+TGG 0.687255 2_4:-36655690 Msa0326540:CDS
TACTAAGAATTTCACCACCG+AGG 0.721507 2_4:-36656702 Msa0326540:intron
TAGTAAGTACAAAATAAGTG+GGG 0.725232 2_4:-36652546 Msa0326540:three_prime_UTR
ACAAGCCATTGAAATCAGTG+GGG 0.776997 2_4:+36652648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTAATAAAAATAAA+AGG + chr2_4:36654781-36654800 None:intergenic 0.0%
!! ATATATATATATATATATAT+TGG + chr2_4:36656389-36656408 None:intergenic 0.0%
!!! TTTAAGACAAATTTTATAAT+GGG - chr2_4:36653202-36653221 Msa0326540:intron 10.0%
!!! TATAACTAAATTGAAATTTT+TGG - chr2_4:36653324-36653343 Msa0326540:intron 10.0%
!!! TAAAATATTTAATTAGCTTA+AGG - chr2_4:36653521-36653540 Msa0326540:intron 10.0%
!!! TTTTCCTTTTTTTTTTTTAT+GGG + chr2_4:36653555-36653574 None:intergenic 10.0%
!!! ATTATTAAATTTTTAGAGAA+CGG - chr2_4:36654949-36654968 Msa0326540:intron 10.0%
!!! TTTTTTGACAAAATAATAAA+AGG - chr2_4:36655097-36655116 Msa0326540:intron 10.0%
!! ATCATTTAGTTAATTAAATA+TGG - chr2_4:36655482-36655501 Msa0326540:intron 10.0%
!! TCATTTAGTTAATTAAATAT+GGG - chr2_4:36655483-36655502 Msa0326540:intron 10.0%
!!! AAAAAATCATTTTTGTTTAA+GGG + chr2_4:36655935-36655954 None:intergenic 10.0%
!! AAAAAATAAATATTAGCTAT+TGG + chr2_4:36656051-36656070 None:intergenic 10.0%
!! AATATTTACTAAAAATAGTA+AGG + chr2_4:36656494-36656513 None:intergenic 10.0%
!! ATAAATATGATATAAATAGT+GGG + chr2_4:36656631-36656650 None:intergenic 10.0%
!! TATAAATATGATATAAATAG+TGG + chr2_4:36656632-36656651 None:intergenic 10.0%
!!! TTTCATATTTTTTTCTTGTT+TGG - chr2_4:36653061-36653080 Msa0326540:intron 15.0%
!!! TTCATATTTTTTTCTTGTTT+GGG - chr2_4:36653062-36653081 Msa0326540:intron 15.0%
!!! GTTTAAGACAAATTTTATAA+TGG - chr2_4:36653201-36653220 Msa0326540:intron 15.0%
!!! CTTTTTTATTCAAAATTTGA+AGG - chr2_4:36653350-36653369 Msa0326540:intron 15.0%
!!! CTTTTCCTTTTTTTTTTTTA+TGG + chr2_4:36653556-36653575 None:intergenic 15.0%
!! TCAACTAATTAATAATAAAG+CGG - chr2_4:36654186-36654205 Msa0326540:intron 15.0%
!!! TTTTTTAATATCGTTAATCT+TGG - chr2_4:36654350-36654369 Msa0326540:intron 15.0%
!! AATATATGTAAAAGTTTACA+TGG - chr2_4:36654404-36654423 Msa0326540:CDS 15.0%
!! ATATATGTAAAAGTTTACAT+GGG - chr2_4:36654405-36654424 Msa0326540:CDS 15.0%
!! TAAAAATAAAACAAGATTGA+GGG + chr2_4:36654553-36654572 None:intergenic 15.0%
!! ATAAAAATAAAACAAGATTG+AGG + chr2_4:36654554-36654573 None:intergenic 15.0%
!!! TTATTAAATTTTTAGAGAAC+GGG - chr2_4:36654950-36654969 Msa0326540:intron 15.0%
!!! GTTGATATAATTTTGAAATA+TGG + chr2_4:36655272-36655291 None:intergenic 15.0%
!!! AAAAATCATTTTTGTTTAAG+GGG + chr2_4:36655934-36655953 None:intergenic 15.0%
!!! GAAAAAATCATTTTTGTTTA+AGG + chr2_4:36655936-36655955 None:intergenic 15.0%
!! TAAATGTTAAGTAGATATAA+CGG + chr2_4:36656011-36656030 None:intergenic 15.0%
!! TCTTCCATTAAAAAAATAAA+AGG - chr2_4:36656181-36656200 Msa0326540:intron 15.0%
!!! TTGTCCTTTTATTTTTTTAA+TGG + chr2_4:36656188-36656207 None:intergenic 15.0%
!! ATTAAAAAAATAAAAGGACA+AGG - chr2_4:36656187-36656206 Msa0326540:intron 15.0%
!!! TTAATAATTACAGTTTTTTG+AGG - chr2_4:36656320-36656339 Msa0326540:intron 15.0%
!!! TAATAATTACAGTTTTTTGA+GGG - chr2_4:36656321-36656340 Msa0326540:intron 15.0%
!! ATATATATATATTGGTACAA+TGG + chr2_4:36656381-36656400 None:intergenic 15.0%
!! CTTTATAACAATAAATTTCA+TGG - chr2_4:36656518-36656537 Msa0326540:intron 15.0%
!! AAATTTACTACAAAGAATAA+GGG - chr2_4:36656562-36656581 Msa0326540:intron 15.0%
!! TGTTATGAAACTAAAGAAAT+AGG + chr2_4:36652484-36652503 None:intergenic 20.0%
!! ATACTGAAACTTATAATAGT+TGG + chr2_4:36652536-36652555 None:intergenic 20.0%
!! AAGTTTCAGTATAAAAGAAA+TGG - chr2_4:36652544-36652563 Msa0326540:three_prime_UTR 20.0%
!! AAAAAAATGTTGCAATTGTT+GGG - chr2_4:36652567-36652586 Msa0326540:three_prime_UTR 20.0%
!! ATAATCAATATCAATGACTT+TGG + chr2_4:36652861-36652880 None:intergenic 20.0%
!!! TCATTGATATTGATTATGTT+GGG - chr2_4:36652864-36652883 Msa0326540:CDS 20.0%
!!! CTTCTTTTTCTTTTTCATTT+TGG - chr2_4:36653034-36653053 Msa0326540:intron 20.0%
!! AAGAAAAAATAAAATTGCAG+TGG - chr2_4:36653131-36653150 Msa0326540:intron 20.0%
!! ATACACAAATAAACATGAAA+GGG + chr2_4:36653428-36653447 None:intergenic 20.0%
!! AATACACAAATAAACATGAA+AGG + chr2_4:36653429-36653448 None:intergenic 20.0%
!! ATGTTTATTTGTGTATTTGT+TGG - chr2_4:36653432-36653451 Msa0326540:intron 20.0%
!! AGTTCCCATAAAAAAAAAAA+AGG - chr2_4:36653548-36653567 Msa0326540:intron 20.0%
!! GTTTGAATATTTGTAAATTC+AGG - chr2_4:36653594-36653613 Msa0326540:intron 20.0%
!! GATCTATATGATATAAGTTT+CGG + chr2_4:36654278-36654297 None:intergenic 20.0%
!!! TAGCAAATTTTTATCTATCT+TGG - chr2_4:36654578-36654597 Msa0326540:CDS 20.0%
!! TTGTTGAAACATATTTGAAA+TGG - chr2_4:36654984-36655003 Msa0326540:intron 20.0%
!!! ATTTTGTCAAAAAAATGATC+AGG + chr2_4:36655091-36655110 None:intergenic 20.0%
!! TTGTGATTTCTTTATATTGA+TGG + chr2_4:36655125-36655144 None:intergenic 20.0%
!! AAATGAGATATTCAATTTGA+TGG - chr2_4:36655814-36655833 Msa0326540:intron 20.0%
!! AGAGAATTTCAATTCATAAA+AGG - chr2_4:36655867-36655886 Msa0326540:CDS 20.0%
!!! GACATTAATTTTAAATCAGA+TGG + chr2_4:36655968-36655987 None:intergenic 20.0%
!! GAAATTTACTACAAAGAATA+AGG - chr2_4:36656561-36656580 Msa0326540:intron 20.0%
!! AATATATGGTCATCTAAAAA+AGG + chr2_4:36656599-36656618 None:intergenic 20.0%
!!! TTTATGATGTGTTAAGTTTT+TGG - chr2_4:36656663-36656682 Msa0326540:intron 20.0%
!! TATTAGTATTCATTCACTTA+CGG + chr2_4:36657059-36657078 None:intergenic 20.0%
!! TATAGTAAGTACAAAATAAG+TGG - chr2_4:36657133-36657152 Msa0326540:exon 20.0%
!! ATAGTAAGTACAAAATAAGT+GGG - chr2_4:36657134-36657153 Msa0326540:exon 20.0%
!! TATATTTATTGCTACAATTC+TGG + chr2_4:36657203-36657222 None:intergenic 20.0%
!!! TAATTGTTTACACTGATTTT+TGG - chr2_4:36657231-36657250 Msa0326540:five_prime_UTR 20.0%
! CATAACATAAACCATATAAG+AGG - chr2_4:36652497-36652516 Msa0326540:three_prime_UTR 25.0%
! GAAAAAAATGTTGCAATTGT+TGG - chr2_4:36652566-36652585 Msa0326540:three_prime_UTR 25.0%
! AAAAAATGTTGCAATTGTTG+GGG - chr2_4:36652568-36652587 Msa0326540:three_prime_UTR 25.0%
! TTGGAATTGAATCTTATGTA+TGG + chr2_4:36652842-36652861 None:intergenic 25.0%
!! GTCATTGATATTGATTATGT+TGG - chr2_4:36652863-36652882 Msa0326540:CDS 25.0%
!! CATTGATATTGATTATGTTG+GGG - chr2_4:36652865-36652884 Msa0326540:CDS 25.0%
! GAAATTCTTAGTATCTTCTA+CGG + chr2_4:36652972-36652991 None:intergenic 25.0%
! CAATTCATATTTACATACCT+CGG + chr2_4:36652999-36653018 None:intergenic 25.0%
! AAAAAATAAAATTGCAGTGG+TGG - chr2_4:36653134-36653153 Msa0326540:intron 25.0%
! ATTTATTCACGTGTATAGTA+TGG + chr2_4:36653481-36653500 None:intergenic 25.0%
!! CTTTACCTTTAAAGATTTCT+GGG + chr2_4:36653702-36653721 None:intergenic 25.0%
!! ACTTTACCTTTAAAGATTTC+TGG + chr2_4:36653703-36653722 None:intergenic 25.0%
! AATCAATTTATCACCTCTAT+AGG - chr2_4:36653948-36653967 Msa0326540:intron 25.0%
! TTTAATATCGTTAATCTTGG+TGG - chr2_4:36654353-36654372 Msa0326540:intron 25.0%
!! ATTTTTATCTATCTTGGAGT+TGG - chr2_4:36654584-36654603 Msa0326540:CDS 25.0%
! ATTAGTTAGATTCTTCTTAG+GGG + chr2_4:36654735-36654754 None:intergenic 25.0%
!! GATTAGTTAGATTCTTCTTA+GGG + chr2_4:36654736-36654755 None:intergenic 25.0%
!! AGATTAGTTAGATTCTTCTT+AGG + chr2_4:36654737-36654756 None:intergenic 25.0%
! ATCTTGAAGAAAACTGTAAT+CGG + chr2_4:36655041-36655060 None:intergenic 25.0%
! AAAGAAGGTTTAACCATTAA+TGG - chr2_4:36655160-36655179 Msa0326540:intron 25.0%
!!! ATTGACTTTTCAAGAGAAAA+TGG - chr2_4:36655353-36655372 Msa0326540:intron 25.0%
! ATGTATGTTACAGTGTTAAA+TGG - chr2_4:36655613-36655632 Msa0326540:CDS 25.0%
!!! TTTTTGAAAGGATTCCAATT+GGG + chr2_4:36655723-36655742 None:intergenic 25.0%
!!! TTTTTTGAAAGGATTCCAAT+TGG + chr2_4:36655724-36655743 None:intergenic 25.0%
! GAATTTCAATTCATAAAAGG+TGG - chr2_4:36655870-36655889 Msa0326540:CDS 25.0%
! ATATATATTGGTACAATGGT+AGG + chr2_4:36656377-36656396 None:intergenic 25.0%
! TATATATAGACCTACCATAA+AGG - chr2_4:36656456-36656475 Msa0326540:intron 25.0%
! ACACATCATAAAATATCATG+TGG + chr2_4:36656655-36656674 None:intergenic 25.0%
! AAAAACTCTTCTTTCTTCTA+TGG + chr2_4:36656988-36657007 None:intergenic 25.0%
! TTACATCTTCTTGTAATTGT+AGG - chr2_4:36657107-36657126 Msa0326540:CDS 25.0%
! TAGTAAGTACAAAATAAGTG+GGG - chr2_4:36657135-36657154 Msa0326540:exon 25.0%
AAAGTAGAGAGAAATAGAGA+AGG + chr2_4:36652452-36652471 None:intergenic 30.0%
ACGCTTAATATCCTCTTATA+TGG + chr2_4:36652511-36652530 None:intergenic 30.0%
AATTTGTAGAGCATATTTGC+AGG + chr2_4:36652615-36652634 None:intergenic 30.0%
TGCAAATATGCTCTACAAAT+TGG - chr2_4:36652614-36652633 Msa0326540:three_prime_UTR 30.0%
! TTGTTTGTTAGTTTGGAGTT+TGG + chr2_4:36652708-36652727 None:intergenic 30.0%
! TCTTTTATAGAAGAATCCCA+TGG + chr2_4:36652752-36652771 None:intergenic 30.0%
GAATCTTATGTATGGAATGA+TGG + chr2_4:36652834-36652853 None:intergenic 30.0%
TCATGAAGAAATGAAGTCAT+GGG - chr2_4:36652892-36652911 Msa0326540:CDS 30.0%
AAATGAAGTCATGGGAATTA+TGG - chr2_4:36652900-36652919 Msa0326540:CDS 30.0%
!! AAATGTTTCTCTAGCTTTGT+TGG + chr2_4:36653278-36653297 None:intergenic 30.0%
! GAAGGTTTAAAACCCTAATT+TGG - chr2_4:36653368-36653387 Msa0326540:intron 30.0%
! TTTGTAAATTCAGGTTCACA+AGG - chr2_4:36653603-36653622 Msa0326540:intron 30.0%
AAGTTTGTCATTCTTTGCAT+TGG - chr2_4:36653628-36653647 Msa0326540:intron 30.0%
AGGTAAAGTTATGCATTCTT+TGG - chr2_4:36653714-36653733 Msa0326540:intron 30.0%
AACAAGAGAGTTACAATAGT+AGG - chr2_4:36653781-36653800 Msa0326540:intron 30.0%
CTCTATACACTGTACAATTA+TGG + chr2_4:36653873-36653892 None:intergenic 30.0%
! CTTATATTTCAACCGTTTTG+CGG - chr2_4:36654055-36654074 Msa0326540:intron 30.0%
GTAGTAATAGATCTTACCAA+TGG + chr2_4:36654143-36654162 None:intergenic 30.0%
TAAAACAAGATTGAGGGATT+AGG + chr2_4:36654547-36654566 None:intergenic 30.0%
GAAGAATCTAACTAATCTCT+AGG - chr2_4:36654739-36654758 Msa0326540:intron 30.0%
! TATTTTATGTTTGCTCACTG+TGG - chr2_4:36654799-36654818 Msa0326540:intron 30.0%
TCTTGAAGAAAACTGTAATC+GGG + chr2_4:36655040-36655059 None:intergenic 30.0%
ATAAAGGTGACCAAAAACTT+AGG - chr2_4:36655230-36655249 Msa0326540:intron 30.0%
! TGAATATGCTCCTAAGTTTT+TGG + chr2_4:36655243-36655262 None:intergenic 30.0%
GTATATACAAACCTGTAGAT+AGG + chr2_4:36655316-36655335 None:intergenic 30.0%
!! CGACTCGGTAAAATAATTAT+TGG + chr2_4:36655406-36655425 None:intergenic 30.0%
TTAATGAACTTCACCAAAAG+AGG + chr2_4:36655452-36655471 None:intergenic 30.0%
AAAATTGCAACATGTACATG+CGG + chr2_4:36655546-36655565 None:intergenic 30.0%
! AATGTAAGCATATTTCTGCT+TGG + chr2_4:36655590-36655609 None:intergenic 30.0%
AGGAAATTTGACTATGGTAT+TGG + chr2_4:36655674-36655693 None:intergenic 30.0%
! AATTAGAATCGATTCCCAAT+TGG - chr2_4:36655706-36655725 Msa0326540:CDS 30.0%
TGCTTCTTAACCATCAAATA+TGG - chr2_4:36655762-36655781 Msa0326540:intron 30.0%
GCTTCTTAACCATCAAATAT+GGG - chr2_4:36655763-36655782 Msa0326540:intron 30.0%
!! AATCATTTTTGTTTAAGGGG+TGG + chr2_4:36655931-36655950 None:intergenic 30.0%
GTTAAGTAGATATAACGGTT+TGG + chr2_4:36656006-36656025 None:intergenic 30.0%
! CGTTTTTCTTGTCCTATTTT+CGG - chr2_4:36656126-36656145 Msa0326540:intron 30.0%
AGAGATGATACAAGAGTAAA+AGG + chr2_4:36656160-36656179 None:intergenic 30.0%
GTCTTAAAATCCTTTATGGT+AGG + chr2_4:36656469-36656488 None:intergenic 30.0%
CATCTAAAAAAGGTTAACGA+CGG + chr2_4:36656589-36656608 None:intergenic 30.0%
ATTCCACAATTGGCAATAAT+AGG - chr2_4:36656737-36656756 Msa0326540:CDS 30.0%
TATCCTATTATTGCCAATTG+TGG + chr2_4:36656743-36656762 None:intergenic 30.0%
CTAATGAAATGAGATGTCAA+TGG - chr2_4:36656789-36656808 Msa0326540:CDS 30.0%
TGGAAAATGATGTGAAAATG+TGG - chr2_4:36656861-36656880 Msa0326540:CDS 30.0%
GGAAAATGATGTGAAAATGT+GGG - chr2_4:36656862-36656881 Msa0326540:CDS 30.0%
GCTATTTGCAGTAATATTGA+TGG + chr2_4:36657178-36657197 None:intergenic 30.0%
TCATCAGATTCGTAGACAAT+TGG + chr2_4:36652647-36652666 None:intergenic 35.0%
ATTGTCTACGAATCTGATGA+TGG - chr2_4:36652647-36652666 Msa0326540:CDS 35.0%
!! GGAAGTCTTGTTTGTTAGTT+TGG + chr2_4:36652715-36652734 None:intergenic 35.0%
! TCCAGTTTACAGATTTTCCA+TGG - chr2_4:36652732-36652751 Msa0326540:CDS 35.0%
! CCAGTTTACAGATTTTCCAT+GGG - chr2_4:36652733-36652752 Msa0326540:CDS 35.0%
! TCTTGCACTTGTTGATTACT+TGG + chr2_4:36652782-36652801 None:intergenic 35.0%
GATGGAAAAATGTTGAGCAT+AGG + chr2_4:36652816-36652835 None:intergenic 35.0%
CTCATGAAGAAATGAAGTCA+TGG - chr2_4:36652891-36652910 Msa0326540:CDS 35.0%
TTCATATTTACATACCTCGG+TGG + chr2_4:36652996-36653015 None:intergenic 35.0%
TCTTAAACCTCCAAACATGT+TGG + chr2_4:36653189-36653208 None:intergenic 35.0%
!! AGCTTTGTTGGTTAGAAAGA+AGG + chr2_4:36653266-36653285 None:intergenic 35.0%
GCTAGAGAAACATTTGTAGT+TGG - chr2_4:36653283-36653302 Msa0326540:intron 35.0%
AAACCCTAATTTGGATTGCT+TGG - chr2_4:36653377-36653396 Msa0326540:intron 35.0%
TGGTGTTCGATAAGGTAAAA+TGG + chr2_4:36653461-36653480 None:intergenic 35.0%
GTATAGTATGGTGTTCGATA+AGG + chr2_4:36653469-36653488 None:intergenic 35.0%
! CTTTGCATTGGAAAGTATAG+TGG - chr2_4:36653640-36653659 Msa0326540:intron 35.0%
AAAGGCCCAGAAATCTTTAA+AGG - chr2_4:36653694-36653713 Msa0326540:intron 35.0%
GTTCTTTGGATAATTGTGCA+AGG + chr2_4:36653984-36654003 None:intergenic 35.0%
TTATCCAAAGAACTACACAC+TGG - chr2_4:36653991-36654010 Msa0326540:intron 35.0%
!! TCTTCCAGATTTTGACATTG+CGG - chr2_4:36654016-36654035 Msa0326540:intron 35.0%
TACCAATGGTGAAAGTAAAG+TGG + chr2_4:36654129-36654148 None:intergenic 35.0%
TTTCTTAGACTCACCAATCA+AGG - chr2_4:36654318-36654337 Msa0326540:intron 35.0%
TTCTTAGACTCACCAATCAA+GGG - chr2_4:36654319-36654338 Msa0326540:intron 35.0%
AAAAACGCATAACCCTTGAT+TGG + chr2_4:36654334-36654353 None:intergenic 35.0%
GTAACATTACATCGCTGTAT+TGG - chr2_4:36654506-36654525 Msa0326540:CDS 35.0%
!!! TGTATTGGTTCGTAGGATTT+TGG - chr2_4:36654521-36654540 Msa0326540:CDS 35.0%
ATATGGGATCTCAAACTAGT+TGG - chr2_4:36654827-36654846 Msa0326540:intron 35.0%
TGAAGCAATAGAATAGAGGA+AGG + chr2_4:36654858-36654877 None:intergenic 35.0%
ATGCTGAAGCAATAGAATAG+AGG + chr2_4:36654862-36654881 None:intergenic 35.0%
AATAACTAGGTCAGCTTCTT+GGG + chr2_4:36655197-36655216 None:intergenic 35.0%
AAATTGCAACATGTACATGC+GGG + chr2_4:36655545-36655564 None:intergenic 35.0%
!! TGACTATGGTATTGGTGAAA+CGG + chr2_4:36655666-36655685 None:intergenic 35.0%
! CTCTCTAGGAAATTTGACTA+TGG + chr2_4:36655680-36655699 None:intergenic 35.0%
CATAGTCAAATTTCCTAGAG+AGG - chr2_4:36655678-36655697 Msa0326540:CDS 35.0%
TTCTAATTCTACTCCTCTCT+AGG + chr2_4:36655694-36655713 None:intergenic 35.0%
ATTGTCTCTCCCATATTTGA+TGG + chr2_4:36655775-36655794 None:intergenic 35.0%
! TTTCTTGTCCTATTTTCGGA+TGG - chr2_4:36656130-36656149 Msa0326540:intron 35.0%
GGTCGTCTTAAAATCCTTTA+TGG + chr2_4:36656473-36656492 None:intergenic 35.0%
ATGTCAATTGTACTGTATCC+AGG - chr2_4:36656696-36656715 Msa0326540:intron 35.0%
! TTTTCCATCTCTCTTATGCT+AGG + chr2_4:36656848-36656867 None:intergenic 35.0%
TAAGTACAAAATAAGTGGGG+TGG - chr2_4:36657138-36657157 Msa0326540:exon 35.0%
AAGTACAAAATAAGTGGGGT+GGG - chr2_4:36657139-36657158 Msa0326540:exon 35.0%
!!! TGATTTTTGGTAAACAACCG+CGG - chr2_4:36657244-36657263 Msa0326540:five_prime_UTR 35.0%
!! GTAACTATGTTTTAAACCCG+CGG + chr2_4:36657264-36657283 None:intergenic 35.0%
!! TACGAATCTGATGATGGCAT+TGG - chr2_4:36652653-36652672 Msa0326540:CDS 40.0%
!! ATGATGGCATTGGTGGAATA+TGG - chr2_4:36652663-36652682 Msa0326540:CDS 40.0%
CCCATGGAAAATCTGTAAAC+TGG + chr2_4:36652736-36652755 None:intergenic 40.0%
AAGTCATGGGAATTATGGAG+TGG - chr2_4:36652905-36652924 Msa0326540:CDS 40.0%
TGGGAATTATGGAGTGGTAA+TGG - chr2_4:36652911-36652930 Msa0326540:CDS 40.0%
!! AGTGGTAATGGAAGTCCATT+TGG - chr2_4:36652923-36652942 Msa0326540:CDS 40.0%
!! TGGAAGTCCATTTGGTTCTA+AGG - chr2_4:36652931-36652950 Msa0326540:CDS 40.0%
!! GGAAGTCCATTTGGTTCTAA+GGG - chr2_4:36652932-36652951 Msa0326540:CDS 40.0%
CAAGTTCCCTTAGAACCAAA+TGG + chr2_4:36652941-36652960 None:intergenic 40.0%
!! CATTTGGTTCTAAGGGAACT+TGG - chr2_4:36652939-36652958 Msa0326540:CDS 40.0%
TACTAAGAATTTCACCACCG+AGG - chr2_4:36652979-36652998 Msa0326540:intron 40.0%
CAGTGGTGGTTAGAACTATT+CGG - chr2_4:36653148-36653167 Msa0326540:intron 40.0%
TAGAACTATTCGGACTCACA+TGG - chr2_4:36653158-36653177 Msa0326540:intron 40.0%
AGGGGGAACTTAGGAATATT+TGG + chr2_4:36653670-36653689 None:intergenic 40.0%
AATATTCCTAAGTTCCCCCT+TGG - chr2_4:36653670-36653689 Msa0326540:intron 40.0%
AGAGTTACAATAGTAGGCTC+AGG - chr2_4:36653787-36653806 Msa0326540:intron 40.0%
GAGTTACAATAGTAGGCTCA+GGG - chr2_4:36653788-36653807 Msa0326540:intron 40.0%
GCTGAATGTGCAAATGCAAA+TGG - chr2_4:36653832-36653851 Msa0326540:intron 40.0%
GAAACCAGTGTGTAGTTCTT+TGG + chr2_4:36653998-36654017 None:intergenic 40.0%
!! CTTCCAGATTTTGACATTGC+GGG - chr2_4:36654017-36654036 Msa0326540:intron 40.0%
GTACTAAAAGCTCCGCAAAA+CGG + chr2_4:36654070-36654089 None:intergenic 40.0%
!! TGAAAGTGCTTAGTGTTCGA+AGG + chr2_4:36654169-36654188 None:intergenic 40.0%
TGCTCACTGTGGTTGTTATA+TGG - chr2_4:36654810-36654829 Msa0326540:intron 40.0%
GCTCACTGTGGTTGTTATAT+GGG - chr2_4:36654811-36654830 Msa0326540:intron 40.0%
ATATCTCTACATGTCGAGCT+GGG - chr2_4:36655059-36655078 Msa0326540:intron 40.0%
! AGCTTTAGCTTCTGCAAAGA+AGG - chr2_4:36655145-36655164 Msa0326540:intron 40.0%
GGGCTTATCTTCTCCATTAA+TGG + chr2_4:36655176-36655195 None:intergenic 40.0%
ATAACTAGGTCAGCTTCTTG+GGG + chr2_4:36655196-36655215 None:intergenic 40.0%
GAATAACTAGGTCAGCTTCT+TGG + chr2_4:36655198-36655217 None:intergenic 40.0%
TGACCTAGTTATTCTTGCCA+CGG - chr2_4:36655204-36655223 Msa0326540:intron 40.0%
ATTCTTGCCACGGGATATAA+AGG - chr2_4:36655214-36655233 Msa0326540:intron 40.0%
GGAAGAATCACATTTCGACT+CGG + chr2_4:36655421-36655440 None:intergenic 40.0%
! CTTCCAAACGATTCCTCTTT+TGG - chr2_4:36655436-36655455 Msa0326540:intron 40.0%
TCACCAAAAGAGGAATCGTT+TGG + chr2_4:36655442-36655461 None:intergenic 40.0%
!! ACTATGGTATTGGTGAAACG+GGG + chr2_4:36655664-36655683 None:intergenic 40.0%
!! GACTATGGTATTGGTGAAAC+GGG + chr2_4:36655665-36655684 None:intergenic 40.0%
!! AAGGAGTACCATCCGAAAAT+AGG + chr2_4:36656141-36656160 None:intergenic 40.0%
GTGGGTGTGCATCTAATATA+TGG + chr2_4:36656613-36656632 None:intergenic 40.0%
TTGCCAATTGTGGAATTCGA+GGG + chr2_4:36656733-36656752 None:intergenic 40.0%
ATTGCCAATTGTGGAATTCG+AGG + chr2_4:36656734-36656753 None:intergenic 40.0%
TGAAATGAGATGTCAATGGC+TGG - chr2_4:36656793-36656812 Msa0326540:CDS 40.0%
ACTTCCTAGCATAAGAGAGA+TGG - chr2_4:36656841-36656860 Msa0326540:CDS 40.0%
TGAAAATGTGGGAAGAGAAC+AGG - chr2_4:36656873-36656892 Msa0326540:CDS 40.0%
TCAAGATCATGCATTACGTG+TGG - chr2_4:36656920-36656939 Msa0326540:CDS 40.0%
CAAGATCATGCATTACGTGT+GGG - chr2_4:36656921-36656940 Msa0326540:CDS 40.0%
GCTGAGCTATTTGAACCATA+TGG - chr2_4:36657010-36657029 Msa0326540:CDS 40.0%
ACAAGCCATTGAAATCAGTG+GGG + chr2_4:36657036-36657055 None:intergenic 40.0%
GACAAGCCATTGAAATCAGT+GGG + chr2_4:36657037-36657056 None:intergenic 40.0%
AGTACAAAATAAGTGGGGTG+GGG - chr2_4:36657140-36657159 Msa0326540:exon 40.0%
!!! GATTTTTGGTAAACAACCGC+GGG - chr2_4:36657245-36657264 Msa0326540:five_prime_UTR 40.0%
AATGTTGCAATTGTTGGGGC+AGG - chr2_4:36652572-36652591 Msa0326540:three_prime_UTR 45.0%
ATTGTTGGGGCAGGAATAAG+TGG - chr2_4:36652581-36652600 Msa0326540:three_prime_UTR 45.0%
!! GAATCTGATGATGGCATTGG+TGG - chr2_4:36652656-36652675 Msa0326540:CDS 45.0%
AACCTCCAAACATGTTGGAC+CGG + chr2_4:36653184-36653203 None:intergenic 45.0%
GGGCCAAGCAATCCAAATTA+GGG + chr2_4:36653383-36653402 None:intergenic 45.0%
TGAAAGGGATGCCGTGTTAT+GGG + chr2_4:36653413-36653432 None:intergenic 45.0%
ATGAAAGGGATGCCGTGTTA+TGG + chr2_4:36653414-36653433 None:intergenic 45.0%
!! ATTTCTGGGCCTTTTCCAAG+GGG + chr2_4:36653688-36653707 None:intergenic 45.0%
!! GATTTCTGGGCCTTTTCCAA+GGG + chr2_4:36653689-36653708 None:intergenic 45.0%
!! AGATTTCTGGGCCTTTTCCA+AGG + chr2_4:36653690-36653709 None:intergenic 45.0%
!! AGCTGCAGTCTTGTTGTCTA+AGG + chr2_4:36653749-36653768 None:intergenic 45.0%
AGGATGAGTGACTCCTATAG+AGG + chr2_4:36653964-36653983 None:intergenic 45.0%
ATGCCCGCAATGTCAAAATC+TGG + chr2_4:36654023-36654042 None:intergenic 45.0%
GACATTGCGGGCATTAATCT+TGG - chr2_4:36654029-36654048 Msa0326540:intron 45.0%
! GAGCTTTTAGTACACAAGCC+TGG - chr2_4:36654077-36654096 Msa0326540:intron 45.0%
CTAAGTAGGAATGGTTCTCC+AGG + chr2_4:36654098-36654117 None:intergenic 45.0%
!! ACCATTCCTACTTAGCCTTG+TGG - chr2_4:36654103-36654122 Msa0326540:intron 45.0%
GTGAAAGTAAAGTGGCCACA+AGG + chr2_4:36654121-36654140 None:intergenic 45.0%
! GGCCACTTTACTTTCACCAT+TGG - chr2_4:36654124-36654143 Msa0326540:intron 45.0%
!! ACATCGCTGTATTGGTTCGT+AGG - chr2_4:36654514-36654533 Msa0326540:CDS 45.0%
AAGCTGCCACTGAAGAAGTA+CGG - chr2_4:36655007-36655026 Msa0326540:intron 45.0%
GATATCTCTACATGTCGAGC+TGG - chr2_4:36655058-36655077 Msa0326540:intron 45.0%
TATCTCTACATGTCGAGCTG+GGG - chr2_4:36655060-36655079 Msa0326540:intron 45.0%
GACCTAGTTATTCTTGCCAC+GGG - chr2_4:36655205-36655224 Msa0326540:intron 45.0%
ATCCCGTGGCAAGAATAACT+AGG + chr2_4:36655210-36655229 None:intergenic 45.0%
TTGGTCACCTTTATATCCCG+TGG + chr2_4:36655224-36655243 None:intergenic 45.0%
CAACGAATCAGCAGACTCAA+CGG - chr2_4:36655288-36655307 Msa0326540:intron 45.0%
ACTCAACGGTTCCTATCTAC+AGG - chr2_4:36655302-36655321 Msa0326540:intron 45.0%
GGATAAACATGCACGTGAGT+TGG + chr2_4:36655643-36655662 None:intergenic 45.0%
TCGAGGGTGAATTATTTGCC+TGG + chr2_4:36656717-36656736 None:intergenic 45.0%
TCACCCTCGAATTCCACAAT+TGG - chr2_4:36656727-36656746 Msa0326540:CDS 45.0%
CATGCATTACGTGTGGGATA+TGG - chr2_4:36656927-36656946 Msa0326540:CDS 45.0%
TTGAAATCAGTGGGGCCATA+TGG + chr2_4:36657028-36657047 None:intergenic 45.0%
!! TATGGCCCCACTGATTTCAA+TGG - chr2_4:36657028-36657047 Msa0326540:CDS 45.0%
GGACAAGCCATTGAAATCAG+TGG + chr2_4:36657038-36657057 None:intergenic 45.0%
!!! ATTTTTTCATTTATTTTATA+AGG + chr2_4:36653229-36653248 None:intergenic 5.0%
!!! ATTTATTTTTTTTTTTTGAA+AGG + chr2_4:36655735-36655754 None:intergenic 5.0%
ACTATTCGGACTCACATGGC+CGG - chr2_4:36653162-36653181 Msa0326540:intron 50.0%
GGGGCCAAGCAATCCAAATT+AGG + chr2_4:36653384-36653403 None:intergenic 50.0%
TGCCGTGTTATGGGTTCGTT+GGG + chr2_4:36653404-36653423 None:intergenic 50.0%
ATGCCGTGTTATGGGTTCGT+TGG + chr2_4:36653405-36653424 None:intergenic 50.0%
! CCTTTTCCAAGGGGGAACTT+AGG + chr2_4:36653679-36653698 None:intergenic 50.0%
CCTAAGTTCCCCCTTGGAAA+AGG - chr2_4:36653676-36653695 Msa0326540:intron 50.0%
! TTTCTGGGCCTTTTCCAAGG+GGG + chr2_4:36653687-36653706 None:intergenic 50.0%
GCCACAAGGCTAAGTAGGAA+TGG + chr2_4:36654107-36654126 None:intergenic 50.0%
AAGTGGCCACAAGGCTAAGT+AGG + chr2_4:36654112-36654131 None:intergenic 50.0%
! AGCTGCCACTGAAGAAGTAC+GGG - chr2_4:36655008-36655027 Msa0326540:intron 50.0%
! TCAATGGCTGGCGCATCTTT+TGG - chr2_4:36656805-36656824 Msa0326540:CDS 50.0%
ACAAAATAAGTGGGGTGGGG+TGG - chr2_4:36657143-36657162 Msa0326540:five_prime_UTR 50.0%
CAAAATAAGTGGGGTGGGGT+GGG - chr2_4:36657144-36657163 Msa0326540:five_prime_UTR 50.0%
AAAATAAGTGGGGTGGGGTG+GGG - chr2_4:36657145-36657164 Msa0326540:five_prime_UTR 50.0%
CATGGCCGGTCCAACATGTT+TGG - chr2_4:36653176-36653195 Msa0326540:intron 55.0%
GCCCCAACGAACCCATAACA+CGG - chr2_4:36653399-36653418 Msa0326540:intron 55.0%
GCCGTGTTATGGGTTCGTTG+GGG + chr2_4:36653403-36653422 None:intergenic 55.0%
ACCAGCCCGTACTTCTTCAG+TGG + chr2_4:36655016-36655035 None:intergenic 55.0%
AAATAAGTGGGGTGGGGTGG+GGG - chr2_4:36657146-36657165 Msa0326540:five_prime_UTR 55.0%
GGCCGGTCCAACATGTTTGG+AGG - chr2_4:36653179-36653198 Msa0326540:intron 60.0%
! GCCACTGAAGAAGTACGGGC+TGG - chr2_4:36655012-36655031 Msa0326540:intron 60.0%
AATAAGTGGGGTGGGGTGGG+GGG - chr2_4:36657147-36657166 Msa0326540:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 36652415 36657288 36652415 ID=Msa0326540;Name=Msa0326540
chr2_4 mRNA 36652415 36657288 36652415 ID=Msa0326540-mRNA-1;Parent=Msa0326540;Name=Msa0326540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=148|1|1|1|1|1|5|219|520
chr2_4 exon 36652415 36652985 36652415 ID=Msa0326540-mRNA-1:exon:11243;Parent=Msa0326540-mRNA-1
chr2_4 exon 36654380 36654738 36654380 ID=Msa0326540-mRNA-1:exon:11242;Parent=Msa0326540-mRNA-1
chr2_4 exon 36655558 36655733 36655558 ID=Msa0326540-mRNA-1:exon:11241;Parent=Msa0326540-mRNA-1
chr2_4 exon 36655850 36656087 36655850 ID=Msa0326540-mRNA-1:exon:11240;Parent=Msa0326540-mRNA-1
chr2_4 exon 36656703 36657288 36656703 ID=Msa0326540-mRNA-1:exon:11239;Parent=Msa0326540-mRNA-1
chr2_4 five_prime_UTR 36657141 36657288 36657141 ID=Msa0326540-mRNA-1:five_prime_utr;Parent=Msa0326540-mRNA-1
chr2_4 CDS 36656703 36657140 36656703 ID=Msa0326540-mRNA-1:cds;Parent=Msa0326540-mRNA-1
chr2_4 CDS 36655850 36656087 36655850 ID=Msa0326540-mRNA-1:cds;Parent=Msa0326540-mRNA-1
chr2_4 CDS 36655558 36655733 36655558 ID=Msa0326540-mRNA-1:cds;Parent=Msa0326540-mRNA-1
chr2_4 CDS 36654380 36654738 36654380 ID=Msa0326540-mRNA-1:cds;Parent=Msa0326540-mRNA-1
chr2_4 CDS 36652634 36652985 36652634 ID=Msa0326540-mRNA-1:cds;Parent=Msa0326540-mRNA-1
chr2_4 three_prime_UTR 36652415 36652633 36652415 ID=Msa0326540-mRNA-1:three_prime_utr;Parent=Msa0326540-mRNA-1
Gene Sequence

>Msa0326540

ATGGAAAAAAATGTTGCAATTGTTGGGGCAGGAATAAGTGGTATACTTGCCTGCAAATATGCTCTACAAATTGGTTTTCATCCAATTGTCTACGAATCTGATGATGGCATTGGTGGAATATGGAGACATACTATTCAGTCTACCAAACTCCAAACTAACAAACAAGACTTCCAGTTTACAGATTTTCCATGGGATTCTTCTATAAAAGAAGATTTTCCAAGTAATCAACAAGTGCAAGATTATCTTAACTCCTATGCTCAACATTTTTCCATCATTCCATACATAAGATTCAATTCCAAAGTCATTGATATTGATTATGTTGGGGAGTCTCATGAAGAAATGAAGTCATGGGAATTATGGAGTGGTAATGGAAGTCCATTTGGTTCTAAGGGAACTTGGCATCTAACCGTAGAAGATACTAAGAATTTCACCACCGAGGTTCACAAGGCTAAGTTTGTCATTCTTTGCATTGGAAAGTATAGTGGCTTTCCAAATATTCCTAAGTTCCCCCTTGGAAAAGGCCCAGAAATCTTTAAAGGTAAAGTTATGCATTCTTTGGATTATTCTGCCTTAGACAACAAGACTGCAGCTGAAATGATAAAAAACAAGAGAGTTACAATAGTAGGCTCAGGGAAATCTGCTTTTGATATTGCTGCTGAATGTGCAAATGCAAATGGAGTCACTCATCCTTGCACAATTATCCAAAGAACTACACACTGGTTTCTTCCAGATTTTGACATTGCGGGCATTAATCTTGGATACTTATATTTCAACCGTTTTGCGGAGCTTTTAGTACACAAGCCTGGAGAACCATTCCTACTTAGCCTTGTGGCCACTTTACTTTCACCATTGAGAACGGGAATTTCAAAACTTGTTGAAACATATTTGAAATGGAAGCTGCCACTGAAGAAGTACGGGCTGGTACCCGATTACAGTTTTCTTCAAGATATCTCTACATGTCGAGCTGGGGTGCTTCCTGATCATTTTTTTGACAAAATAATAAAAGGATCCATCAATATAAAGAAATCACAAAGCTTTAGCTTCTGCAAAGAAGGTTTAACCATTAATGGAGAAGATAAGCCCCAAGAAGCTGACCTAGTTATTCTTGCCACGGGATATAAAGGTGACCAAAAACTTAGGAGCATATTCAAATCTACCATATTTCAAAATTATATCAACGAATCAGCAGACTCAACGGTTCCTATCTACAGGCAAATAATTCACCCTCGAATTCCACAATTGGCAATAATAGGATACGACGACAGCTTATCAAATATTTTTTCTAATGAAATGAGATGTCAATGGCTGGCGCATCTTTTGGATGAAAACATTGAACTTCCTAGCATAAGAGAGATGGAAAATGATGTGAAAATGTGGGAAGAGAACAGGAAGCAACATACAAATAATTTTAATTCAAGATCATGCATTACGTGTGGGATATGGTATAACGATCAGTTGTGCAAAGACATGAAATGTAACCATAGAAGAAAGAAGAGTTTTTTTGCTGAGCTATTTGAACCATATGGCCCCACTGATTTCAATGGCTTGTCCGTAAGTGAATGA
Protein sequence

>Msa0326540

MEKNVAIVGAGISGILACKYALQIGFHPIVYESDDGIGGIWRHTIQSTKLQTNKQDFQFTDFPWDSSIKEDFPSNQQVQDYLNSYAQHFSIIPYIRFNSKVIDIDYVGESHEEMKSWELWSGNGSPFGSKGTWHLTVEDTKNFTTEVHKAKFVILCIGKYSGFPNIPKFPLGKGPEIFKGKVMHSLDYSALDNKTAAEMIKNKRVTIVGSGKSAFDIAAECANANGVTHPCTIIQRTTHWFLPDFDIAGINLGYLYFNRFAELLVHKPGEPFLLSLVATLLSPLRTGISKLVETYLKWKLPLKKYGLVPDYSFLQDISTCRAGVLPDHFFDKIIKGSINIKKSQSFSFCKEGLTINGEDKPQEADLVILATGYKGDQKLRSIFKSTIFQNYINESADSTVPIYRQIIHPRIPQLAIIGYDDSLSNIFSNEMRCQWLAHLLDENIELPSIREMENDVKMWEENRKQHTNNFNSRSCITCGIWYNDQLCKDMKCNHRRKKSFFAELFEPYGPTDFNGLSVSE*