AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0222990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222990 MtrunA17_Chr2g0328261 98.462 260 4 0 1 260 1 260 0.0 531
Msa0222990 MtrunA17_Chr5g0435311 86.694 248 33 0 13 260 61 308 2.07e-165 459
Msa0222990 MtrunA17_Chr4g0031621 87.597 258 31 1 3 260 2 258 4.73e-163 452
Msa0222990 MtrunA17_Chr7g0238681 81.783 258 47 0 3 260 1 258 4.01e-160 444
Msa0222990 MtrunA17_Chr3g0128801 67.451 255 79 2 6 258 1 253 1.00e-126 360
Msa0222990 MtrunA17_Chr3g0128791 67.451 255 79 2 6 258 1 253 2.00e-126 359
Msa0222990 MtrunA17_Chr5g0417701 72.926 229 60 1 31 259 22 248 3.49e-125 355
Msa0222990 MtrunA17_Chr4g0042521 69.444 252 67 4 6 255 1 244 1.51e-123 351
Msa0222990 MtrunA17_Chr5g0432611 67.600 250 76 3 11 258 5 251 4.57e-122 348
Msa0222990 MtrunA17_Chr3g0107311 66.537 257 82 3 3 258 1 254 1.16e-119 342
Msa0222990 MtrunA17_Chr3g0107291 66.535 254 79 2 5 258 13 260 1.28e-119 342
Msa0222990 MtrunA17_Chr3g0092071 71.111 225 63 1 34 258 25 247 5.51e-119 340
Msa0222990 MtrunA17_Chr7g0217661 63.563 247 80 2 12 258 4 240 4.29e-112 322
Msa0222990 MtrunA17_Chr1g0193631 66.079 227 73 3 33 256 29 254 1.60e-107 311
Msa0222990 MtrunA17_Chr7g0271001 59.761 251 95 4 6 253 1 248 5.71e-107 310
Msa0222990 MtrunA17_Chr4g0069711 59.031 227 90 2 32 257 59 283 6.24e-102 298
Msa0222990 MtrunA17_Chr6g0453341 61.176 255 88 3 4 258 9 252 1.01e-99 291
Msa0222990 MtrunA17_Chr1g0157061 64.220 218 75 2 41 256 22 238 4.52e-98 286
Msa0222990 MtrunA17_Chr7g0218751 53.725 255 110 2 1 255 1 247 3.57e-95 280
Msa0222990 MtrunA17_Chr8g0360041 57.658 222 92 1 34 255 31 250 5.43e-94 277
Msa0222990 MtrunA17_Chr7g0218741 56.696 224 94 2 34 256 29 250 2.62e-93 275
Msa0222990 MtrunA17_Chr5g0398271 50.000 254 125 2 4 256 7 259 4.74e-92 272
Msa0222990 MtrunA17_Chr4g0057091 51.383 253 120 3 9 259 11 262 4.84e-92 272
Msa0222990 MtrunA17_Chr7g0218761 60.294 204 79 1 53 256 8 209 6.61e-89 262
Msa0222990 MtrunA17_Chr5g0433841 55.111 225 100 1 34 258 41 264 3.56e-88 262
Msa0222990 MtrunA17_Chr8g0360721 59.701 201 79 1 53 253 17 215 4.96e-88 260
Msa0222990 MtrunA17_Chr4g0021561 46.825 252 131 1 7 258 8 256 1.13e-86 258
Msa0222990 MtrunA17_Chr3g0109801 53.617 235 100 5 33 259 52 285 2.22e-81 246
Msa0222990 MtrunA17_Chr4g0022841 61.207 116 45 0 140 255 1 116 7.57e-45 147
Msa0222990 MtrunA17_Chr4g0022851 53.968 126 51 2 6 131 7 125 6.16e-42 139
Msa0222990 MtrunA17_Chr2g0324191 43.846 130 73 0 29 158 23 152 2.27e-40 136
Msa0222990 MtrunA17_Chr2g0324181 57.426 101 43 0 158 258 17 117 1.16e-34 120
Msa0222990 MtrunA17_Chr2g0324221 28.030 264 163 10 5 256 7 255 1.02e-23 96.7
Msa0222990 MtrunA17_Chr4g0021641 30.638 235 137 11 34 256 41 261 5.23e-21 89.4
Msa0222990 MtrunA17_Chr2g0324201 27.863 262 160 11 10 256 6 253 1.08e-20 88.2
Msa0222990 MtrunA17_Chr8g0359981 48.837 86 35 4 76 158 2 81 4.04e-20 83.2
Msa0222990 MtrunA17_Chr8g0359971 46.250 80 42 1 179 257 1 80 1.06e-19 80.9
Msa0222990 MtrunA17_Chr4g0012801 29.661 236 131 11 34 253 42 258 1.63e-19 85.1
Msa0222990 MtrunA17_Chr7g0231221 29.870 231 132 12 39 253 53 269 3.04e-17 79.3
Msa0222990 MtrunA17_Chr7g0231211 27.966 236 136 12 34 253 47 264 1.08e-15 74.7
Msa0222990 MtrunA17_Chr1g0193571 55.932 59 25 1 203 260 4 62 1.14e-13 64.3
Msa0222990 MtrunA17_Chr4g0038741 26.667 225 130 9 45 253 32 237 2.22e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222990 AT2G39700.1 83.137 255 42 1 7 260 3 257 2.86e-163 452
Msa0222990 AT2G28950.1 85.156 256 38 0 5 260 2 257 2.65e-159 442
Msa0222990 AT3G55500.1 76.923 260 60 0 1 260 1 260 2.12e-155 433
Msa0222990 AT2G37640.1 78.486 251 54 0 10 260 12 262 2.98e-151 422
Msa0222990 AT5G02260.1 75.194 258 64 0 3 260 1 258 4.66e-149 417
Msa0222990 AT2G37640.2 80.952 210 40 0 51 260 28 237 2.69e-130 369
Msa0222990 AT1G69530.2 67.729 251 78 2 9 259 3 250 1.97e-122 349
Msa0222990 AT1G69530.1 67.729 251 78 2 9 259 3 250 1.97e-122 349
Msa0222990 AT1G69530.3 67.331 251 79 2 9 259 3 250 4.53e-121 347
Msa0222990 AT5G56320.1 64.981 257 82 4 4 260 5 253 3.06e-120 343
Msa0222990 AT5G56320.2 64.981 257 82 4 4 260 5 253 3.06e-120 343
Msa0222990 AT5G56320.3 64.981 257 82 4 4 260 5 253 1.60e-119 343
Msa0222990 AT2G03090.1 70.996 231 64 2 29 259 26 253 2.05e-119 342
Msa0222990 AT5G05290.1 63.780 254 84 3 6 258 9 255 1.52e-118 339
Msa0222990 AT2G40610.1 69.565 230 67 2 30 258 26 253 1.20e-115 332
Msa0222990 AT1G26770.2 69.796 245 71 2 16 259 17 259 2.35e-114 329
Msa0222990 AT1G26770.1 66.148 257 79 2 3 259 1 249 2.39e-114 328
Msa0222990 AT3G29030.1 66.372 226 67 2 34 259 38 254 3.55e-107 310
Msa0222990 AT4G01630.1 62.097 248 85 5 9 253 8 249 5.81e-107 310
Msa0222990 AT1G69530.4 61.355 251 64 3 9 259 3 220 3.61e-106 306
Msa0222990 AT1G69530.5 60.956 251 65 3 9 259 3 220 5.48e-105 305
Msa0222990 AT1G20190.1 63.927 219 76 2 38 254 30 247 3.30e-99 290
Msa0222990 AT5G39290.1 50.542 277 110 4 3 256 4 276 1.34e-95 282
Msa0222990 AT5G39270.1 50.542 277 110 4 3 256 4 276 2.14e-95 281
Msa0222990 AT1G62980.1 52.941 255 117 3 3 256 1 253 2.53e-92 273
Msa0222990 AT5G39300.1 51.136 264 112 5 6 256 14 273 1.33e-90 269
Msa0222990 AT5G39280.1 56.250 224 94 2 33 256 53 272 1.85e-90 269
Msa0222990 AT1G12560.1 54.008 237 105 4 25 259 28 262 1.01e-88 264
Msa0222990 AT3G03220.1 53.744 227 104 1 34 260 40 265 6.44e-87 259
Msa0222990 AT5G39310.1 55.357 224 95 3 34 256 90 309 3.41e-85 257
Msa0222990 AT4G38210.1 45.968 248 132 1 14 259 8 255 1.39e-79 241
Msa0222990 AT1G20190.2 60.106 188 72 2 69 254 2 188 2.38e-78 235
Msa0222990 AT3G15370.1 47.638 254 117 7 7 256 6 247 2.30e-75 229
Msa0222990 AT5G39260.1 52.000 225 98 3 33 256 44 259 8.14e-75 229
Msa0222990 AT3G15370.2 42.756 283 116 8 8 256 7 277 1.09e-68 214
Msa0222990 AT4G28250.1 30.085 236 138 10 34 256 36 257 1.41e-22 94.0
Msa0222990 AT2G20750.1 29.958 237 140 10 34 256 40 264 1.32e-21 91.3
Msa0222990 AT1G65680.1 30.213 235 135 11 34 253 47 267 2.48e-20 87.8
Msa0222990 AT4G28250.2 27.660 235 139 9 34 256 36 251 7.25e-19 83.6
Msa0222990 AT2G20750.2 30.857 175 99 7 34 197 40 203 1.07e-14 71.6
Msa0222990 AT4G28250.4 31.073 177 93 8 34 200 36 193 1.46e-13 68.2
Msa0222990 AT3G60570.1 23.723 274 180 8 1 260 1 259 4.12e-13 67.8
Msa0222990 AT3G45970.2 25.352 213 137 9 52 253 14 215 4.74e-13 67.4
Msa0222990 AT4G28250.3 31.034 174 91 8 34 197 36 190 5.59e-13 66.6
Msa0222990 AT4G17030.1 25.100 251 165 9 13 253 6 243 3.42e-12 65.1

Find 103 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGGGTAGAGGAGTTATT+TGG 0.226107 2_1:+72412969 Msa0222990:three_prime_UTR
TTTCCAATTTGAACTTTCAT+AGG 0.238828 2_1:-72413131 None:intergenic
ACCGTCGCACTTCCACTTCT+TGG 0.241176 2_1:+72412593 Msa0222990:CDS
GGAACATTGCTCCACATAAT+TGG 0.246045 2_1:+72412614 Msa0222990:CDS
GCTCCACATAATTGGCAATT+TGG 0.259736 2_1:+72412622 Msa0222990:CDS
TCACTAGGTTGAGCAAAATT+AGG 0.282502 2_1:-72411581 None:intergenic
AACCCTATGAAAGTTCAAAT+TGG 0.295692 2_1:+72413128 Msa0222990:three_prime_UTR
TTGGCAATCAAATTCAGTTT+TGG 0.302765 2_1:+72412534 Msa0222990:CDS
AGAAATGGGTATGGGGAGTA+TGG 0.315839 2_1:+72411091 Msa0222990:exon
GACAAGCAGTGGTGTCATTC+TGG 0.336967 2_1:+72411518 Msa0222990:CDS
TATGTTAAGGGCACTAAAAC+AGG 0.337612 2_1:+72412478 Msa0222990:CDS
GGATGCCAATGAGCAGAAAC+TGG 0.338905 2_1:+72412503 Msa0222990:CDS
GTTAGTTGCTGTGATGAAAA+TGG 0.339967 2_1:-72411549 None:intergenic
TTAGGAGGAGCATGTGGATA+TGG 0.344997 2_1:+72411389 Msa0222990:intron
GTCCTAATCAGCAACGTTGC+AGG 0.348958 2_1:+72412433 Msa0222990:CDS
GTGTCAAAGTGGATAATTAA+AGG 0.352597 2_1:+72412885 Msa0222990:three_prime_UTR
GGAACAGAGAGAAAGAGATA+TGG 0.360476 2_1:-72410988 None:intergenic
GTAGGAAGCGTGGTGGGATT+AGG 0.372081 2_1:+72412377 Msa0222990:CDS
CACCTGCAACGTTGCTGATT+AGG 0.375478 2_1:-72412435 None:intergenic
GCTTTGTCCTTCAGAGTTAC+CGG 0.383935 2_1:+72412565 Msa0222990:CDS
CAATTTGGTCAAACTTTCAC+TGG 0.389947 2_1:+72412637 Msa0222990:CDS
ATCAGCAACGTTGCAGGTGC+AGG 0.391465 2_1:+72412439 Msa0222990:CDS
AGCAGTATCATAATGTTTGT+TGG 0.397550 2_1:+72413213 Msa0222990:three_prime_UTR
GGGATTAGGTTCACAATAAA+CGG 0.397891 2_1:+72412391 Msa0222990:CDS
AAAGGCGACAGGGACGATTC+CGG 0.402838 2_1:-72411684 None:intergenic
TACGGAGGTTCCGATGCTTC+CGG 0.415576 2_1:+72411218 Msa0222990:CDS
TATAGTGAGGACCTATGTTA+AGG 0.434796 2_1:+72412465 Msa0222990:CDS
AACTTGTATAGTCAAGGTTA+TGG 0.443205 2_1:+72411413 Msa0222990:CDS
TTTCGTGTTTGATTGATCAA+TGG 0.444722 2_1:+72412667 Msa0222990:exon
GAACAGAGAGAAAGAGATAT+GGG 0.447162 2_1:-72410987 None:intergenic
TCGTCCCTGTCGCCTTTCGC+CGG 0.466817 2_1:+72411690 Msa0222990:CDS
TGACCAAATTGCCAATTATG+TGG 0.467767 2_1:-72412625 None:intergenic
ACAAACCGGCGAAAGGCGAC+AGG 0.470017 2_1:-72411695 None:intergenic
GGTAGAGGAGTTATTTGGAA+AGG 0.475636 2_1:+72412974 Msa0222990:three_prime_UTR
TTCCAATTTGAACTTTCATA+GGG 0.483127 2_1:-72413130 None:intergenic
AATGGAAAAGATTAGGGTAG+AGG 0.486775 2_1:+72412959 Msa0222990:three_prime_UTR
TCCGATGCTTCCGGCACCAT+GGG 0.492789 2_1:+72411227 Msa0222990:CDS
TATAGAAATGTGTGTCAAAG+TGG 0.512839 2_1:+72412874 Msa0222990:three_prime_UTR
ATCCCACCACGCTTCCTACA+TGG 0.515202 2_1:-72412373 None:intergenic
TAACAACCAACACACCTCAA+TGG 0.517555 2_1:-72413106 None:intergenic
ATAGTGAGGACCTATGTTAA+GGG 0.521329 2_1:+72412466 Msa0222990:CDS
GCACCACCATTGTAAACACC+TGG 0.523553 2_1:-72411170 None:intergenic
ACCCATGGTGCCGGAAGCAT+CGG 0.533485 2_1:-72411228 None:intergenic
TGGAGCAATGTTCCAAGAAG+TGG 0.536985 2_1:-72412605 None:intergenic
TTGTATAACTAATTAGCTGC+GGG 0.539425 2_1:-72413045 None:intergenic
GTACTACATCCCCACTCAAA+GGG 0.551778 2_1:-72413189 None:intergenic
AGAGATATGGGTGGAACGAG+TGG 0.558962 2_1:-72410975 None:intergenic
GATGCCAATGAGCAGAAACT+GGG 0.559055 2_1:+72412504 Msa0222990:CDS
ATGTATCCATTGAGGTGTGT+TGG 0.560476 2_1:+72413100 Msa0222990:three_prime_UTR
TCAGCAACGTTGCAGGTGCA+GGG 0.562393 2_1:+72412440 Msa0222990:CDS
TTACTTGCCACGTAGGTCAC+TGG 0.562722 2_1:+72412690 Msa0222990:three_prime_UTR
TTCCGATGCTTCCGGCACCA+TGG 0.566242 2_1:+72411226 Msa0222990:CDS
TTCAACAATGGACTAAGTTG+TGG 0.574416 2_1:+72411467 Msa0222990:CDS
GTAGGGTACAAACCGGCGAA+AGG 0.576269 2_1:-72411702 None:intergenic
ATGGTAAATGCTAGAATCCC+AGG 0.576542 2_1:+72411152 Msa0222990:CDS
TGTACTACATCCCCACTCAA+AGG 0.576635 2_1:-72413190 None:intergenic
GGAAGTGCGACGGTCACTAC+CGG 0.579926 2_1:-72412584 None:intergenic
CACCAACCACCATTGTCACT+AGG 0.581152 2_1:-72411596 None:intergenic
AAGTGTAGGAAATGTTGAAG+TGG 0.584474 2_1:+72413005 Msa0222990:three_prime_UTR
ATTGTATAACTAATTAGCTG+CGG 0.584992 2_1:-72413046 None:intergenic
TATGGAAACTTGTATAGTCA+AGG 0.585100 2_1:+72411407 Msa0222990:CDS
GTCACTACCGGTAACTCTGA+AGG 0.588519 2_1:-72412572 None:intergenic
AAAGTGGATAATTAAAGGAG+TGG 0.590383 2_1:+72412890 Msa0222990:three_prime_UTR
ATCCCAGGTGTTTACAATGG+TGG 0.596482 2_1:+72411167 Msa0222990:CDS
TAGGAAATGTTGAAGTGGCT+AGG 0.607621 2_1:+72413010 Msa0222990:three_prime_UTR
ACTAGACGTACCCATGGTGC+CGG 0.607745 2_1:-72411237 None:intergenic
TTTGCTCAACCTAGTGACAA+TGG 0.609073 2_1:+72411587 Msa0222990:CDS
GCAAGATCAAAGTGAGGACG+AGG 0.609633 2_1:-72411626 None:intergenic
TCCAAGAAGTGGAAGTGCGA+CGG 0.611335 2_1:-72412594 None:intergenic
TATGTCACTAACAATGTGGA+TGG 0.613645 2_1:+72411133 Msa0222990:CDS
AACCTAGTGACAATGGTGGT+TGG 0.618881 2_1:+72411594 Msa0222990:CDS
CAGCAACGTTGCAGGTGCAG+GGG 0.618959 2_1:+72412441 Msa0222990:CDS
GATTATGCAGGGTGCCATGT+AGG 0.619428 2_1:+72412359 Msa0222990:intron
TGCCATGTAGGAAGCGTGGT+GGG 0.620597 2_1:+72412371 Msa0222990:CDS
TTAGGACTAAGTTAAAGTAA+CGG 0.623009 2_1:-72412417 None:intergenic
GTGTGTTTAGGAGGAGCATG+TGG 0.626776 2_1:+72411383 Msa0222990:intron
AGATCAAAGTGAGGACGAGG+AGG 0.633474 2_1:-72411623 None:intergenic
CTAGGTTGAGCAAAATTAGG+AGG 0.633552 2_1:-72411578 None:intergenic
CAAACCGGCGAAAGGCGACA+GGG 0.633653 2_1:-72411694 None:intergenic
CAGAGAGAAAGAGATATGGG+TGG 0.647807 2_1:-72410984 None:intergenic
CACCACCATTGTAAACACCT+GGG 0.648144 2_1:-72411169 None:intergenic
ATTGCTCTATGTATCCATTG+AGG 0.651374 2_1:+72413092 Msa0222990:three_prime_UTR
GTGTTTACAATGGTGGTGCA+TGG 0.652108 2_1:+72411174 Msa0222990:CDS
AGCACAGCACTATTCAACAA+TGG 0.654867 2_1:+72411455 Msa0222990:CDS
GTGCCATGTAGGAAGCGTGG+TGG 0.655283 2_1:+72412370 Msa0222990:CDS
AGAATCCCAGGTGTTTACAA+TGG 0.660050 2_1:+72411164 Msa0222990:CDS
GTTGCTGTGATGAAAATGGA+AGG 0.660102 2_1:-72411545 None:intergenic
AAAATCGCTGAATATCGCGC+CGG 0.661509 2_1:+72411665 Msa0222990:CDS
ATGTTAAGGGCACTAAAACA+GGG 0.661896 2_1:+72412479 Msa0222990:CDS
TCAATGGTTACTTGCCACGT+AGG 0.663827 2_1:+72412683 Msa0222990:three_prime_UTR
TTATTATGTCACTAACAATG+TGG 0.670910 2_1:+72411129 Msa0222990:CDS
CAGGTGCAGGGGATATAGTG+AGG 0.673660 2_1:+72412452 Msa0222990:CDS
ATGCCAATGAGCAGAAACTG+GGG 0.677827 2_1:+72412505 Msa0222990:CDS
GATCAAAGTGAGGACGAGGA+GGG 0.681799 2_1:-72411622 None:intergenic
AGGGTGCCATGTAGGAAGCG+TGG 0.699181 2_1:+72412367 Msa0222990:intron
TGCCAATGAGCAGAAACTGG+GGG 0.704067 2_1:+72412506 Msa0222990:CDS
TTGCTGTGATGAAAATGGAA+GGG 0.708603 2_1:-72411544 None:intergenic
TGTTTGTTGGAAGAAATGCA+AGG 0.709674 2_1:+72413226 Msa0222990:three_prime_UTR
GGCATGGCAAGATCAAAGTG+AGG 0.710022 2_1:-72411632 None:intergenic
GCTCAACCTAGTGACAATGG+TGG 0.714318 2_1:+72411590 Msa0222990:CDS
AGTGTGCAAATGACAAGCAG+TGG 0.728732 2_1:+72411507 Msa0222990:CDS
TTAAGGGCACTAAAACAGGG+TGG 0.761599 2_1:+72412482 Msa0222990:CDS
ACTTTGACCAGTGACCTACG+TGG 0.826698 2_1:-72412697 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGATTTAGTTTAAAAAAAT+TGG - chr2_1:72411053-72411072 None:intergenic 10.0%
!!! TAGATTTAGTTTAAAAAAAT+TGG - chr2_1:72411053-72411072 None:intergenic 10.0%
!!! AATAAGAAGTATATAGATAA+TGG + chr2_1:72411919-72411938 Msa0222990:intron 15.0%
!!! ATAAGAAGTATATAGATAAT+GGG + chr2_1:72411920-72411939 Msa0222990:intron 15.0%
!!! ATATATAAGCACTTTTATTA+GGG - chr2_1:72412027-72412046 None:intergenic 15.0%
!!! TATATATAAGCACTTTTATT+AGG - chr2_1:72412028-72412047 None:intergenic 15.0%
!! AAACTTAAAATAGTTTATGA+AGG + chr2_1:72412141-72412160 Msa0222990:intron 15.0%
!!! TTTTAGATTTGTATGAAAAA+TGG + chr2_1:72412941-72412960 Msa0222990:three_prime_UTR 15.0%
!!! AATAAGAAGTATATAGATAA+TGG + chr2_1:72411919-72411938 Msa0222990:intron 15.0%
!!! ATAAGAAGTATATAGATAAT+GGG + chr2_1:72411920-72411939 Msa0222990:intron 15.0%
!!! ATATATAAGCACTTTTATTA+GGG - chr2_1:72412027-72412046 None:intergenic 15.0%
!!! TATATATAAGCACTTTTATT+AGG - chr2_1:72412028-72412047 None:intergenic 15.0%
!! AAACTTAAAATAGTTTATGA+AGG + chr2_1:72412141-72412160 Msa0222990:intron 15.0%
!!! TTTTAGATTTGTATGAAAAA+TGG + chr2_1:72412941-72412960 Msa0222990:three_prime_UTR 15.0%
!! AGAAGAAAAAAAAACAGAAA+TGG + chr2_1:72411076-72411095 Msa0222990:exon 20.0%
!! GAAGAAAAAAAAACAGAAAT+GGG + chr2_1:72411077-72411096 Msa0222990:exon 20.0%
!!! TGCTCTATTAAAATTGATTT+TGG + chr2_1:72411738-72411757 Msa0222990:intron 20.0%
!! TAAATGACTTGAATGTTAAA+TGG + chr2_1:72411853-72411872 Msa0222990:intron 20.0%
!! ATTAGTTATTTATTCCAACA+TGG - chr2_1:72411963-72411982 None:intergenic 20.0%
!! TATGAAAAATGGAAAAGATT+AGG + chr2_1:72412952-72412971 Msa0222990:three_prime_UTR 20.0%
!! ATGAAAAATGGAAAAGATTA+GGG + chr2_1:72412953-72412972 Msa0222990:three_prime_UTR 20.0%
!! AGAAGAAAAAAAAACAGAAA+TGG + chr2_1:72411076-72411095 Msa0222990:exon 20.0%
!! GAAGAAAAAAAAACAGAAAT+GGG + chr2_1:72411077-72411096 Msa0222990:exon 20.0%
!!! TGCTCTATTAAAATTGATTT+TGG + chr2_1:72411738-72411757 Msa0222990:intron 20.0%
!! TAAATGACTTGAATGTTAAA+TGG + chr2_1:72411853-72411872 Msa0222990:intron 20.0%
!! ATTAGTTATTTATTCCAACA+TGG - chr2_1:72411963-72411982 None:intergenic 20.0%
!! TATGAAAAATGGAAAAGATT+AGG + chr2_1:72412952-72412971 Msa0222990:three_prime_UTR 20.0%
!! ATGAAAAATGGAAAAGATTA+GGG + chr2_1:72412953-72412972 Msa0222990:three_prime_UTR 20.0%
! AAAAAATAGAGAAAAAGCAG+AGG - chr2_1:72411017-72411036 None:intergenic 25.0%
! TTAAAAAAATTGGACAGTTG+AGG - chr2_1:72411043-72411062 None:intergenic 25.0%
! AAAAAAAACAGAAATGGGTA+TGG + chr2_1:72411082-72411101 Msa0222990:exon 25.0%
! AAAAAAACAGAAATGGGTAT+GGG + chr2_1:72411083-72411102 Msa0222990:exon 25.0%
! TTATTATGTCACTAACAATG+TGG + chr2_1:72411129-72411148 Msa0222990:CDS 25.0%
! AGCAAATAAGCAAAAATGTA+GGG - chr2_1:72411722-72411741 None:intergenic 25.0%
!!! TAGATAATGGGAGAATAAAT+TGG + chr2_1:72411932-72411951 Msa0222990:intron 25.0%
! GAAAACATCTTATGACTTAT+AGG - chr2_1:72412092-72412111 None:intergenic 25.0%
!!! TTTTCTTAACTTCTTTGAAG+TGG - chr2_1:72412120-72412139 None:intergenic 25.0%
!! GGATTGACATAATTTTTGTT+AGG - chr2_1:72412230-72412249 None:intergenic 25.0%
!! AAGTAAATAAGCCTTATCTA+AGG - chr2_1:72412260-72412279 None:intergenic 25.0%
!!! TTTTGTTATGTTGATTATGC+AGG + chr2_1:72412347-72412366 Msa0222990:intron 25.0%
!! TTTGTTATGTTGATTATGCA+GGG + chr2_1:72412348-72412367 Msa0222990:intron 25.0%
! TTAGGACTAAGTTAAAGTAA+CGG - chr2_1:72412420-72412439 None:intergenic 25.0%
! ATTGTATAACTAATTAGCTG+CGG - chr2_1:72413049-72413068 None:intergenic 25.0%
! TTCCAATTTGAACTTTCATA+GGG - chr2_1:72413133-72413152 None:intergenic 25.0%
! TTTCCAATTTGAACTTTCAT+AGG - chr2_1:72413134-72413153 None:intergenic 25.0%
! AAAAAATAGAGAAAAAGCAG+AGG - chr2_1:72411017-72411036 None:intergenic 25.0%
! TTAAAAAAATTGGACAGTTG+AGG - chr2_1:72411043-72411062 None:intergenic 25.0%
! AAAAAAAACAGAAATGGGTA+TGG + chr2_1:72411082-72411101 Msa0222990:exon 25.0%
! AAAAAAACAGAAATGGGTAT+GGG + chr2_1:72411083-72411102 Msa0222990:exon 25.0%
! TTATTATGTCACTAACAATG+TGG + chr2_1:72411129-72411148 Msa0222990:CDS 25.0%
! AGCAAATAAGCAAAAATGTA+GGG - chr2_1:72411722-72411741 None:intergenic 25.0%
!!! TAGATAATGGGAGAATAAAT+TGG + chr2_1:72411932-72411951 Msa0222990:intron 25.0%
! GAAAACATCTTATGACTTAT+AGG - chr2_1:72412092-72412111 None:intergenic 25.0%
!!! TTTTCTTAACTTCTTTGAAG+TGG - chr2_1:72412120-72412139 None:intergenic 25.0%
!! GGATTGACATAATTTTTGTT+AGG - chr2_1:72412230-72412249 None:intergenic 25.0%
!! AAGTAAATAAGCCTTATCTA+AGG - chr2_1:72412260-72412279 None:intergenic 25.0%
!!! TTTTGTTATGTTGATTATGC+AGG + chr2_1:72412347-72412366 Msa0222990:intron 25.0%
!! TTTGTTATGTTGATTATGCA+GGG + chr2_1:72412348-72412367 Msa0222990:intron 25.0%
! TTAGGACTAAGTTAAAGTAA+CGG - chr2_1:72412420-72412439 None:intergenic 25.0%
! ATTGTATAACTAATTAGCTG+CGG - chr2_1:72413049-72413068 None:intergenic 25.0%
! TTCCAATTTGAACTTTCATA+GGG - chr2_1:72413133-72413152 None:intergenic 25.0%
! TTTCCAATTTGAACTTTCAT+AGG - chr2_1:72413134-72413153 None:intergenic 25.0%
AAAAAACAGAAATGGGTATG+GGG + chr2_1:72411084-72411103 Msa0222990:exon 30.0%
!!! TTTGCCTTTTTTGTGTGTTT+AGG + chr2_1:72411371-72411390 Msa0222990:intron 30.0%
TATGGAAACTTGTATAGTCA+AGG + chr2_1:72411407-72411426 Msa0222990:CDS 30.0%
AACTTGTATAGTCAAGGTTA+TGG + chr2_1:72411413-72411432 Msa0222990:CDS 30.0%
GAGCAAATAAGCAAAAATGT+AGG - chr2_1:72411723-72411742 None:intergenic 30.0%
AAACAAACACTTGATGTCAT+CGG - chr2_1:72411772-72411791 None:intergenic 30.0%
!! CAAGTGTTTGTTTGATTTTG+TGG + chr2_1:72411779-72411798 Msa0222990:intron 30.0%
TGTGATAGATCTCAATGATA+AGG + chr2_1:72411880-72411899 Msa0222990:intron 30.0%
ATAAATTGGTAAGACCATGT+TGG + chr2_1:72411946-72411965 Msa0222990:intron 30.0%
! TTGGCAATCAAATTCAGTTT+TGG + chr2_1:72412534-72412553 Msa0222990:CDS 30.0%
!! CAATCAAATTCAGTTTTGGT+GGG + chr2_1:72412538-72412557 Msa0222990:CDS 30.0%
TTTCGTGTTTGATTGATCAA+TGG + chr2_1:72412667-72412686 Msa0222990:exon 30.0%
! TTTTCCACCAATTGTGTTTT+TGG + chr2_1:72412790-72412809 Msa0222990:three_prime_UTR 30.0%
TCAAAAAGAACACCAATCTA+TGG - chr2_1:72412828-72412847 None:intergenic 30.0%
TATAGAAATGTGTGTCAAAG+TGG + chr2_1:72412874-72412893 Msa0222990:three_prime_UTR 30.0%
GTGTCAAAGTGGATAATTAA+AGG + chr2_1:72412885-72412904 Msa0222990:three_prime_UTR 30.0%
AAAGTGGATAATTAAAGGAG+TGG + chr2_1:72412890-72412909 Msa0222990:three_prime_UTR 30.0%
! GAAAGGATGAAAAAAAGTGT+AGG + chr2_1:72412991-72413010 Msa0222990:three_prime_UTR 30.0%
TTGTATAACTAATTAGCTGC+GGG - chr2_1:72413048-72413067 None:intergenic 30.0%
AACCCTATGAAAGTTCAAAT+TGG + chr2_1:72413128-72413147 Msa0222990:three_prime_UTR 30.0%
! TTCAATTTTACCCTTTGAGT+GGG + chr2_1:72413179-72413198 Msa0222990:three_prime_UTR 30.0%
AGCAGTATCATAATGTTTGT+TGG + chr2_1:72413213-72413232 Msa0222990:three_prime_UTR 30.0%
AAAAAACAGAAATGGGTATG+GGG + chr2_1:72411084-72411103 Msa0222990:exon 30.0%
!!! TTTGCCTTTTTTGTGTGTTT+AGG + chr2_1:72411371-72411390 Msa0222990:intron 30.0%
TATGGAAACTTGTATAGTCA+AGG + chr2_1:72411407-72411426 Msa0222990:CDS 30.0%
AACTTGTATAGTCAAGGTTA+TGG + chr2_1:72411413-72411432 Msa0222990:CDS 30.0%
GAGCAAATAAGCAAAAATGT+AGG - chr2_1:72411723-72411742 None:intergenic 30.0%
AAACAAACACTTGATGTCAT+CGG - chr2_1:72411772-72411791 None:intergenic 30.0%
!! CAAGTGTTTGTTTGATTTTG+TGG + chr2_1:72411779-72411798 Msa0222990:intron 30.0%
TGTGATAGATCTCAATGATA+AGG + chr2_1:72411880-72411899 Msa0222990:intron 30.0%
ATAAATTGGTAAGACCATGT+TGG + chr2_1:72411946-72411965 Msa0222990:intron 30.0%
! TTGGCAATCAAATTCAGTTT+TGG + chr2_1:72412534-72412553 Msa0222990:CDS 30.0%
!! CAATCAAATTCAGTTTTGGT+GGG + chr2_1:72412538-72412557 Msa0222990:CDS 30.0%
TTTCGTGTTTGATTGATCAA+TGG + chr2_1:72412667-72412686 Msa0222990:exon 30.0%
! TTTTCCACCAATTGTGTTTT+TGG + chr2_1:72412790-72412809 Msa0222990:three_prime_UTR 30.0%
TCAAAAAGAACACCAATCTA+TGG - chr2_1:72412828-72412847 None:intergenic 30.0%
TATAGAAATGTGTGTCAAAG+TGG + chr2_1:72412874-72412893 Msa0222990:three_prime_UTR 30.0%
GTGTCAAAGTGGATAATTAA+AGG + chr2_1:72412885-72412904 Msa0222990:three_prime_UTR 30.0%
AAAGTGGATAATTAAAGGAG+TGG + chr2_1:72412890-72412909 Msa0222990:three_prime_UTR 30.0%
! GAAAGGATGAAAAAAAGTGT+AGG + chr2_1:72412991-72413010 Msa0222990:three_prime_UTR 30.0%
TTGTATAACTAATTAGCTGC+GGG - chr2_1:72413048-72413067 None:intergenic 30.0%
AACCCTATGAAAGTTCAAAT+TGG + chr2_1:72413128-72413147 Msa0222990:three_prime_UTR 30.0%
! TTCAATTTTACCCTTTGAGT+GGG + chr2_1:72413179-72413198 Msa0222990:three_prime_UTR 30.0%
AGCAGTATCATAATGTTTGT+TGG + chr2_1:72413213-72413232 Msa0222990:three_prime_UTR 30.0%
GAACAGAGAGAAAGAGATAT+GGG - chr2_1:72410990-72411009 None:intergenic 35.0%
ATAGAGAAAAAGCAGAGGTA+TGG - chr2_1:72411012-72411031 None:intergenic 35.0%
TATGTCACTAACAATGTGGA+TGG + chr2_1:72411133-72411152 Msa0222990:CDS 35.0%
TCCTCCTAAACACACAAAAA+AGG - chr2_1:72411378-72411397 None:intergenic 35.0%
!! TTCAACAATGGACTAAGTTG+TGG + chr2_1:72411467-72411486 Msa0222990:CDS 35.0%
TTGCTGTGATGAAAATGGAA+GGG - chr2_1:72411547-72411566 None:intergenic 35.0%
GTTAGTTGCTGTGATGAAAA+TGG - chr2_1:72411552-72411571 None:intergenic 35.0%
! TCACTAGGTTGAGCAAAATT+AGG - chr2_1:72411584-72411603 None:intergenic 35.0%
!! GATTTTAAGGAACATAGGCA+TGG - chr2_1:72411651-72411670 None:intergenic 35.0%
!! TCAGCGATTTTAAGGAACAT+AGG - chr2_1:72411656-72411675 None:intergenic 35.0%
CAAAAATGTAGGGTACAAAC+CGG - chr2_1:72411712-72411731 None:intergenic 35.0%
ATCCAAACATGCCTTAGATA+AGG + chr2_1:72412246-72412265 Msa0222990:intron 35.0%
GGGATTAGGTTCACAATAAA+CGG + chr2_1:72412391-72412410 Msa0222990:CDS 35.0%
TATAGTGAGGACCTATGTTA+AGG + chr2_1:72412465-72412484 Msa0222990:CDS 35.0%
ATAGTGAGGACCTATGTTAA+GGG + chr2_1:72412466-72412485 Msa0222990:CDS 35.0%
!!! TGTTTTAGTGCCCTTAACAT+AGG - chr2_1:72412479-72412498 None:intergenic 35.0%
!! TATGTTAAGGGCACTAAAAC+AGG + chr2_1:72412478-72412497 Msa0222990:CDS 35.0%
!! ATGTTAAGGGCACTAAAACA+GGG + chr2_1:72412479-72412498 Msa0222990:CDS 35.0%
!! GCAATCAAATTCAGTTTTGG+TGG + chr2_1:72412537-72412556 Msa0222990:CDS 35.0%
TGACCAAATTGCCAATTATG+TGG - chr2_1:72412628-72412647 None:intergenic 35.0%
CAATTTGGTCAAACTTTCAC+TGG + chr2_1:72412637-72412656 Msa0222990:CDS 35.0%
!! GATTGGTGTTCTTTTTGACT+AGG + chr2_1:72412830-72412849 Msa0222990:three_prime_UTR 35.0%
AATGGAAAAGATTAGGGTAG+AGG + chr2_1:72412959-72412978 Msa0222990:three_prime_UTR 35.0%
ATTAGGGTAGAGGAGTTATT+TGG + chr2_1:72412969-72412988 Msa0222990:three_prime_UTR 35.0%
AAGTGTAGGAAATGTTGAAG+TGG + chr2_1:72413005-72413024 Msa0222990:three_prime_UTR 35.0%
ATTGCTCTATGTATCCATTG+AGG + chr2_1:72413092-72413111 Msa0222990:three_prime_UTR 35.0%
! CTTCAATTTTACCCTTTGAG+TGG + chr2_1:72413178-72413197 Msa0222990:three_prime_UTR 35.0%
! TCAATTTTACCCTTTGAGTG+GGG + chr2_1:72413180-72413199 Msa0222990:three_prime_UTR 35.0%
! TGTTTGTTGGAAGAAATGCA+AGG + chr2_1:72413226-72413245 Msa0222990:three_prime_UTR 35.0%
GAACAGAGAGAAAGAGATAT+GGG - chr2_1:72410990-72411009 None:intergenic 35.0%
ATAGAGAAAAAGCAGAGGTA+TGG - chr2_1:72411012-72411031 None:intergenic 35.0%
TATGTCACTAACAATGTGGA+TGG + chr2_1:72411133-72411152 Msa0222990:CDS 35.0%
TCCTCCTAAACACACAAAAA+AGG - chr2_1:72411378-72411397 None:intergenic 35.0%
!! TTCAACAATGGACTAAGTTG+TGG + chr2_1:72411467-72411486 Msa0222990:CDS 35.0%
TTGCTGTGATGAAAATGGAA+GGG - chr2_1:72411547-72411566 None:intergenic 35.0%
GTTAGTTGCTGTGATGAAAA+TGG - chr2_1:72411552-72411571 None:intergenic 35.0%
! TCACTAGGTTGAGCAAAATT+AGG - chr2_1:72411584-72411603 None:intergenic 35.0%
!! GATTTTAAGGAACATAGGCA+TGG - chr2_1:72411651-72411670 None:intergenic 35.0%
!! TCAGCGATTTTAAGGAACAT+AGG - chr2_1:72411656-72411675 None:intergenic 35.0%
CAAAAATGTAGGGTACAAAC+CGG - chr2_1:72411712-72411731 None:intergenic 35.0%
ATCCAAACATGCCTTAGATA+AGG + chr2_1:72412246-72412265 Msa0222990:intron 35.0%
GGGATTAGGTTCACAATAAA+CGG + chr2_1:72412391-72412410 Msa0222990:CDS 35.0%
TATAGTGAGGACCTATGTTA+AGG + chr2_1:72412465-72412484 Msa0222990:CDS 35.0%
ATAGTGAGGACCTATGTTAA+GGG + chr2_1:72412466-72412485 Msa0222990:CDS 35.0%
!!! TGTTTTAGTGCCCTTAACAT+AGG - chr2_1:72412479-72412498 None:intergenic 35.0%
!! TATGTTAAGGGCACTAAAAC+AGG + chr2_1:72412478-72412497 Msa0222990:CDS 35.0%
!! ATGTTAAGGGCACTAAAACA+GGG + chr2_1:72412479-72412498 Msa0222990:CDS 35.0%
!! GCAATCAAATTCAGTTTTGG+TGG + chr2_1:72412537-72412556 Msa0222990:CDS 35.0%
TGACCAAATTGCCAATTATG+TGG - chr2_1:72412628-72412647 None:intergenic 35.0%
CAATTTGGTCAAACTTTCAC+TGG + chr2_1:72412637-72412656 Msa0222990:CDS 35.0%
!! GATTGGTGTTCTTTTTGACT+AGG + chr2_1:72412830-72412849 Msa0222990:three_prime_UTR 35.0%
AATGGAAAAGATTAGGGTAG+AGG + chr2_1:72412959-72412978 Msa0222990:three_prime_UTR 35.0%
ATTAGGGTAGAGGAGTTATT+TGG + chr2_1:72412969-72412988 Msa0222990:three_prime_UTR 35.0%
AAGTGTAGGAAATGTTGAAG+TGG + chr2_1:72413005-72413024 Msa0222990:three_prime_UTR 35.0%
ATTGCTCTATGTATCCATTG+AGG + chr2_1:72413092-72413111 Msa0222990:three_prime_UTR 35.0%
! CTTCAATTTTACCCTTTGAG+TGG + chr2_1:72413178-72413197 Msa0222990:three_prime_UTR 35.0%
! TCAATTTTACCCTTTGAGTG+GGG + chr2_1:72413180-72413199 Msa0222990:three_prime_UTR 35.0%
! TGTTTGTTGGAAGAAATGCA+AGG + chr2_1:72413226-72413245 Msa0222990:three_prime_UTR 35.0%
GGAACAGAGAGAAAGAGATA+TGG - chr2_1:72410991-72411010 None:intergenic 40.0%
ATGGTAAATGCTAGAATCCC+AGG + chr2_1:72411152-72411171 Msa0222990:CDS 40.0%
AGAATCCCAGGTGTTTACAA+TGG + chr2_1:72411164-72411183 Msa0222990:CDS 40.0%
!!! ACAGCTCATGCCACTTTTTA+CGG + chr2_1:72411200-72411219 Msa0222990:CDS 40.0%
TTTAGTACTAGACGTACCCA+TGG - chr2_1:72411246-72411265 None:intergenic 40.0%
!!! GCCTTTTTTGTGTGTTTAGG+AGG + chr2_1:72411374-72411393 Msa0222990:intron 40.0%
AGCACAGCACTATTCAACAA+TGG + chr2_1:72411455-72411474 Msa0222990:CDS 40.0%
GTTGCTGTGATGAAAATGGA+AGG - chr2_1:72411548-72411567 None:intergenic 40.0%
! CTAGGTTGAGCAAAATTAGG+AGG - chr2_1:72411581-72411600 None:intergenic 40.0%
TTTGCTCAACCTAGTGACAA+TGG + chr2_1:72411587-72411606 Msa0222990:CDS 40.0%
! CGCGATATTCAGCGATTTTA+AGG - chr2_1:72411664-72411683 None:intergenic 40.0%
! AGCCTTATCTAAGGCATGTT+TGG - chr2_1:72412251-72412270 None:intergenic 40.0%
GGAACATTGCTCCACATAAT+TGG + chr2_1:72412614-72412633 Msa0222990:CDS 40.0%
GCTCCACATAATTGGCAATT+TGG + chr2_1:72412622-72412641 Msa0222990:CDS 40.0%
! CGCGCAATTTTACCATAGAT+TGG + chr2_1:72412813-72412832 Msa0222990:three_prime_UTR 40.0%
GGTAGAGGAGTTATTTGGAA+AGG + chr2_1:72412974-72412993 Msa0222990:three_prime_UTR 40.0%
TAGGAAATGTTGAAGTGGCT+AGG + chr2_1:72413010-72413029 Msa0222990:three_prime_UTR 40.0%
ATGTATCCATTGAGGTGTGT+TGG + chr2_1:72413100-72413119 Msa0222990:three_prime_UTR 40.0%
TAACAACCAACACACCTCAA+TGG - chr2_1:72413109-72413128 None:intergenic 40.0%
GGAACAGAGAGAAAGAGATA+TGG - chr2_1:72410991-72411010 None:intergenic 40.0%
ATGGTAAATGCTAGAATCCC+AGG + chr2_1:72411152-72411171 Msa0222990:CDS 40.0%
AGAATCCCAGGTGTTTACAA+TGG + chr2_1:72411164-72411183 Msa0222990:CDS 40.0%
!!! ACAGCTCATGCCACTTTTTA+CGG + chr2_1:72411200-72411219 Msa0222990:CDS 40.0%
TTTAGTACTAGACGTACCCA+TGG - chr2_1:72411246-72411265 None:intergenic 40.0%
!!! GCCTTTTTTGTGTGTTTAGG+AGG + chr2_1:72411374-72411393 Msa0222990:intron 40.0%
AGCACAGCACTATTCAACAA+TGG + chr2_1:72411455-72411474 Msa0222990:CDS 40.0%
GTTGCTGTGATGAAAATGGA+AGG - chr2_1:72411548-72411567 None:intergenic 40.0%
! CTAGGTTGAGCAAAATTAGG+AGG - chr2_1:72411581-72411600 None:intergenic 40.0%
TTTGCTCAACCTAGTGACAA+TGG + chr2_1:72411587-72411606 Msa0222990:CDS 40.0%
! CGCGATATTCAGCGATTTTA+AGG - chr2_1:72411664-72411683 None:intergenic 40.0%
! AGCCTTATCTAAGGCATGTT+TGG - chr2_1:72412251-72412270 None:intergenic 40.0%
GGAACATTGCTCCACATAAT+TGG + chr2_1:72412614-72412633 Msa0222990:CDS 40.0%
GCTCCACATAATTGGCAATT+TGG + chr2_1:72412622-72412641 Msa0222990:CDS 40.0%
! CGCGCAATTTTACCATAGAT+TGG + chr2_1:72412813-72412832 Msa0222990:three_prime_UTR 40.0%
GGTAGAGGAGTTATTTGGAA+AGG + chr2_1:72412974-72412993 Msa0222990:three_prime_UTR 40.0%
TAGGAAATGTTGAAGTGGCT+AGG + chr2_1:72413010-72413029 Msa0222990:three_prime_UTR 40.0%
ATGTATCCATTGAGGTGTGT+TGG + chr2_1:72413100-72413119 Msa0222990:three_prime_UTR 40.0%
TAACAACCAACACACCTCAA+TGG - chr2_1:72413109-72413128 None:intergenic 40.0%
CAGAGAGAAAGAGATATGGG+TGG - chr2_1:72410987-72411006 None:intergenic 45.0%
AGAAATGGGTATGGGGAGTA+TGG + chr2_1:72411091-72411110 Msa0222990:exon 45.0%
ATCCCAGGTGTTTACAATGG+TGG + chr2_1:72411167-72411186 Msa0222990:CDS 45.0%
CACCACCATTGTAAACACCT+GGG - chr2_1:72411172-72411191 None:intergenic 45.0%
! GTGTTTACAATGGTGGTGCA+TGG + chr2_1:72411174-72411193 Msa0222990:CDS 45.0%
ATCGGAACCTCCGTAAAAAG+TGG - chr2_1:72411213-72411232 None:intergenic 45.0%
! TTAGGAGGAGCATGTGGATA+TGG + chr2_1:72411389-72411408 Msa0222990:intron 45.0%
AGTGTGCAAATGACAAGCAG+TGG + chr2_1:72411507-72411526 Msa0222990:CDS 45.0%
AACCTAGTGACAATGGTGGT+TGG + chr2_1:72411594-72411613 Msa0222990:CDS 45.0%
AAAATCGCTGAATATCGCGC+CGG + chr2_1:72411665-72411684 Msa0222990:CDS 45.0%
!! TTAAGGGCACTAAAACAGGG+TGG + chr2_1:72412482-72412501 Msa0222990:CDS 45.0%
GATGCCAATGAGCAGAAACT+GGG + chr2_1:72412504-72412523 Msa0222990:CDS 45.0%
ATGCCAATGAGCAGAAACTG+GGG + chr2_1:72412505-72412524 Msa0222990:CDS 45.0%
GCTTTGTCCTTCAGAGTTAC+CGG + chr2_1:72412565-72412584 Msa0222990:CDS 45.0%
TGGAGCAATGTTCCAAGAAG+TGG - chr2_1:72412608-72412627 None:intergenic 45.0%
TCAATGGTTACTTGCCACGT+AGG + chr2_1:72412683-72412702 Msa0222990:three_prime_UTR 45.0%
TTGCGCGCCAAAAACACAAT+TGG - chr2_1:72412800-72412819 None:intergenic 45.0%
GTACTACATCCCCACTCAAA+GGG - chr2_1:72413192-72413211 None:intergenic 45.0%
TGTACTACATCCCCACTCAA+AGG - chr2_1:72413193-72413212 None:intergenic 45.0%
CAGAGAGAAAGAGATATGGG+TGG - chr2_1:72410987-72411006 None:intergenic 45.0%
AGAAATGGGTATGGGGAGTA+TGG + chr2_1:72411091-72411110 Msa0222990:exon 45.0%
ATCCCAGGTGTTTACAATGG+TGG + chr2_1:72411167-72411186 Msa0222990:CDS 45.0%
CACCACCATTGTAAACACCT+GGG - chr2_1:72411172-72411191 None:intergenic 45.0%
! GTGTTTACAATGGTGGTGCA+TGG + chr2_1:72411174-72411193 Msa0222990:CDS 45.0%
ATCGGAACCTCCGTAAAAAG+TGG - chr2_1:72411213-72411232 None:intergenic 45.0%
! TTAGGAGGAGCATGTGGATA+TGG + chr2_1:72411389-72411408 Msa0222990:intron 45.0%
AGTGTGCAAATGACAAGCAG+TGG + chr2_1:72411507-72411526 Msa0222990:CDS 45.0%
AACCTAGTGACAATGGTGGT+TGG + chr2_1:72411594-72411613 Msa0222990:CDS 45.0%
AAAATCGCTGAATATCGCGC+CGG + chr2_1:72411665-72411684 Msa0222990:CDS 45.0%
!! TTAAGGGCACTAAAACAGGG+TGG + chr2_1:72412482-72412501 Msa0222990:CDS 45.0%
GATGCCAATGAGCAGAAACT+GGG + chr2_1:72412504-72412523 Msa0222990:CDS 45.0%
ATGCCAATGAGCAGAAACTG+GGG + chr2_1:72412505-72412524 Msa0222990:CDS 45.0%
GCTTTGTCCTTCAGAGTTAC+CGG + chr2_1:72412565-72412584 Msa0222990:CDS 45.0%
TGGAGCAATGTTCCAAGAAG+TGG - chr2_1:72412608-72412627 None:intergenic 45.0%
TCAATGGTTACTTGCCACGT+AGG + chr2_1:72412683-72412702 Msa0222990:three_prime_UTR 45.0%
TTGCGCGCCAAAAACACAAT+TGG - chr2_1:72412800-72412819 None:intergenic 45.0%
GTACTACATCCCCACTCAAA+GGG - chr2_1:72413192-72413211 None:intergenic 45.0%
TGTACTACATCCCCACTCAA+AGG - chr2_1:72413193-72413212 None:intergenic 45.0%
AGAGATATGGGTGGAACGAG+TGG - chr2_1:72410978-72410997 None:intergenic 50.0%
GCACCACCATTGTAAACACC+TGG - chr2_1:72411173-72411192 None:intergenic 50.0%
!!! GCTCATGCCACTTTTTACGG+AGG + chr2_1:72411203-72411222 Msa0222990:CDS 50.0%
! GTGTGTTTAGGAGGAGCATG+TGG + chr2_1:72411383-72411402 Msa0222990:intron 50.0%
!! GACAAGCAGTGGTGTCATTC+TGG + chr2_1:72411518-72411537 Msa0222990:CDS 50.0%
GCTCAACCTAGTGACAATGG+TGG + chr2_1:72411590-72411609 Msa0222990:CDS 50.0%
CACCAACCACCATTGTCACT+AGG - chr2_1:72411599-72411618 None:intergenic 50.0%
GATCAAAGTGAGGACGAGGA+GGG - chr2_1:72411625-72411644 None:intergenic 50.0%
AGATCAAAGTGAGGACGAGG+AGG - chr2_1:72411626-72411645 None:intergenic 50.0%
GCAAGATCAAAGTGAGGACG+AGG - chr2_1:72411629-72411648 None:intergenic 50.0%
GGCATGGCAAGATCAAAGTG+AGG - chr2_1:72411635-72411654 None:intergenic 50.0%
! GATTATGCAGGGTGCCATGT+AGG + chr2_1:72412359-72412378 Msa0222990:intron 50.0%
GTCCTAATCAGCAACGTTGC+AGG + chr2_1:72412433-72412452 Msa0222990:CDS 50.0%
! CACCTGCAACGTTGCTGATT+AGG - chr2_1:72412438-72412457 None:intergenic 50.0%
GGATGCCAATGAGCAGAAAC+TGG + chr2_1:72412503-72412522 Msa0222990:CDS 50.0%
TGCCAATGAGCAGAAACTGG+GGG + chr2_1:72412506-72412525 Msa0222990:CDS 50.0%
GCAGAAACTGGGGGCAAAAT+TGG + chr2_1:72412515-72412534 Msa0222990:CDS 50.0%
GTCACTACCGGTAACTCTGA+AGG - chr2_1:72412575-72412594 None:intergenic 50.0%
! TCCAAGAAGTGGAAGTGCGA+CGG - chr2_1:72412597-72412616 None:intergenic 50.0%
TTACTTGCCACGTAGGTCAC+TGG + chr2_1:72412690-72412709 Msa0222990:three_prime_UTR 50.0%
ACTTTGACCAGTGACCTACG+TGG - chr2_1:72412700-72412719 None:intergenic 50.0%
CGCGCCAAAAACACAATTGG+TGG - chr2_1:72412797-72412816 None:intergenic 50.0%
AGAGATATGGGTGGAACGAG+TGG - chr2_1:72410978-72410997 None:intergenic 50.0%
GCACCACCATTGTAAACACC+TGG - chr2_1:72411173-72411192 None:intergenic 50.0%
!!! GCTCATGCCACTTTTTACGG+AGG + chr2_1:72411203-72411222 Msa0222990:CDS 50.0%
! GTGTGTTTAGGAGGAGCATG+TGG + chr2_1:72411383-72411402 Msa0222990:intron 50.0%
!! GACAAGCAGTGGTGTCATTC+TGG + chr2_1:72411518-72411537 Msa0222990:CDS 50.0%
GCTCAACCTAGTGACAATGG+TGG + chr2_1:72411590-72411609 Msa0222990:CDS 50.0%
CACCAACCACCATTGTCACT+AGG - chr2_1:72411599-72411618 None:intergenic 50.0%
GATCAAAGTGAGGACGAGGA+GGG - chr2_1:72411625-72411644 None:intergenic 50.0%
AGATCAAAGTGAGGACGAGG+AGG - chr2_1:72411626-72411645 None:intergenic 50.0%
GCAAGATCAAAGTGAGGACG+AGG - chr2_1:72411629-72411648 None:intergenic 50.0%
GGCATGGCAAGATCAAAGTG+AGG - chr2_1:72411635-72411654 None:intergenic 50.0%
! GATTATGCAGGGTGCCATGT+AGG + chr2_1:72412359-72412378 Msa0222990:intron 50.0%
GTCCTAATCAGCAACGTTGC+AGG + chr2_1:72412433-72412452 Msa0222990:CDS 50.0%
! CACCTGCAACGTTGCTGATT+AGG - chr2_1:72412438-72412457 None:intergenic 50.0%
GGATGCCAATGAGCAGAAAC+TGG + chr2_1:72412503-72412522 Msa0222990:CDS 50.0%
TGCCAATGAGCAGAAACTGG+GGG + chr2_1:72412506-72412525 Msa0222990:CDS 50.0%
GCAGAAACTGGGGGCAAAAT+TGG + chr2_1:72412515-72412534 Msa0222990:CDS 50.0%
GTCACTACCGGTAACTCTGA+AGG - chr2_1:72412575-72412594 None:intergenic 50.0%
! TCCAAGAAGTGGAAGTGCGA+CGG - chr2_1:72412597-72412616 None:intergenic 50.0%
TTACTTGCCACGTAGGTCAC+TGG + chr2_1:72412690-72412709 Msa0222990:three_prime_UTR 50.0%
ACTTTGACCAGTGACCTACG+TGG - chr2_1:72412700-72412719 None:intergenic 50.0%
CGCGCCAAAAACACAATTGG+TGG - chr2_1:72412797-72412816 None:intergenic 50.0%
TACGGAGGTTCCGATGCTTC+CGG + chr2_1:72411218-72411237 Msa0222990:CDS 55.0%
ACTAGACGTACCCATGGTGC+CGG - chr2_1:72411240-72411259 None:intergenic 55.0%
AAAGGCGACAGGGACGATTC+CGG - chr2_1:72411687-72411706 None:intergenic 55.0%
GTAGGGTACAAACCGGCGAA+AGG - chr2_1:72411705-72411724 None:intergenic 55.0%
! TGCCATGTAGGAAGCGTGGT+GGG + chr2_1:72412371-72412390 Msa0222990:CDS 55.0%
ATCCCACCACGCTTCCTACA+TGG - chr2_1:72412376-72412395 None:intergenic 55.0%
! GTAGGAAGCGTGGTGGGATT+AGG + chr2_1:72412377-72412396 Msa0222990:CDS 55.0%
ATCAGCAACGTTGCAGGTGC+AGG + chr2_1:72412439-72412458 Msa0222990:CDS 55.0%
TCAGCAACGTTGCAGGTGCA+GGG + chr2_1:72412440-72412459 Msa0222990:CDS 55.0%
CAGGTGCAGGGGATATAGTG+AGG + chr2_1:72412452-72412471 Msa0222990:CDS 55.0%
TGCCCCCAGTTTCTGCTCAT+TGG - chr2_1:72412511-72412530 None:intergenic 55.0%
ACCGTCGCACTTCCACTTCT+TGG + chr2_1:72412593-72412612 Msa0222990:CDS 55.0%
TACGGAGGTTCCGATGCTTC+CGG + chr2_1:72411218-72411237 Msa0222990:CDS 55.0%
ACTAGACGTACCCATGGTGC+CGG - chr2_1:72411240-72411259 None:intergenic 55.0%
AAAGGCGACAGGGACGATTC+CGG - chr2_1:72411687-72411706 None:intergenic 55.0%
GTAGGGTACAAACCGGCGAA+AGG - chr2_1:72411705-72411724 None:intergenic 55.0%
! TGCCATGTAGGAAGCGTGGT+GGG + chr2_1:72412371-72412390 Msa0222990:CDS 55.0%
ATCCCACCACGCTTCCTACA+TGG - chr2_1:72412376-72412395 None:intergenic 55.0%
! GTAGGAAGCGTGGTGGGATT+AGG + chr2_1:72412377-72412396 Msa0222990:CDS 55.0%
ATCAGCAACGTTGCAGGTGC+AGG + chr2_1:72412439-72412458 Msa0222990:CDS 55.0%
TCAGCAACGTTGCAGGTGCA+GGG + chr2_1:72412440-72412459 Msa0222990:CDS 55.0%
CAGGTGCAGGGGATATAGTG+AGG + chr2_1:72412452-72412471 Msa0222990:CDS 55.0%
TGCCCCCAGTTTCTGCTCAT+TGG - chr2_1:72412511-72412530 None:intergenic 55.0%
ACCGTCGCACTTCCACTTCT+TGG + chr2_1:72412593-72412612 Msa0222990:CDS 55.0%
TTCCGATGCTTCCGGCACCA+TGG + chr2_1:72411226-72411245 Msa0222990:CDS 60.0%
TCCGATGCTTCCGGCACCAT+GGG + chr2_1:72411227-72411246 Msa0222990:CDS 60.0%
! ACCCATGGTGCCGGAAGCAT+CGG - chr2_1:72411231-72411250 None:intergenic 60.0%
CAAACCGGCGAAAGGCGACA+GGG - chr2_1:72411697-72411716 None:intergenic 60.0%
ACAAACCGGCGAAAGGCGAC+AGG - chr2_1:72411698-72411717 None:intergenic 60.0%
! AGGGTGCCATGTAGGAAGCG+TGG + chr2_1:72412367-72412386 Msa0222990:intron 60.0%
! GTGCCATGTAGGAAGCGTGG+TGG + chr2_1:72412370-72412389 Msa0222990:CDS 60.0%
CAGCAACGTTGCAGGTGCAG+GGG + chr2_1:72412441-72412460 Msa0222990:CDS 60.0%
! GGAAGTGCGACGGTCACTAC+CGG - chr2_1:72412587-72412606 None:intergenic 60.0%
TTCCGATGCTTCCGGCACCA+TGG + chr2_1:72411226-72411245 Msa0222990:CDS 60.0%
TCCGATGCTTCCGGCACCAT+GGG + chr2_1:72411227-72411246 Msa0222990:CDS 60.0%
! ACCCATGGTGCCGGAAGCAT+CGG - chr2_1:72411231-72411250 None:intergenic 60.0%
CAAACCGGCGAAAGGCGACA+GGG - chr2_1:72411697-72411716 None:intergenic 60.0%
ACAAACCGGCGAAAGGCGAC+AGG - chr2_1:72411698-72411717 None:intergenic 60.0%
! AGGGTGCCATGTAGGAAGCG+TGG + chr2_1:72412367-72412386 Msa0222990:intron 60.0%
! GTGCCATGTAGGAAGCGTGG+TGG + chr2_1:72412370-72412389 Msa0222990:CDS 60.0%
CAGCAACGTTGCAGGTGCAG+GGG + chr2_1:72412441-72412460 Msa0222990:CDS 60.0%
! GGAAGTGCGACGGTCACTAC+CGG - chr2_1:72412587-72412606 None:intergenic 60.0%
TCGTCCCTGTCGCCTTTCGC+CGG + chr2_1:72411690-72411709 Msa0222990:CDS 65.0%
TCGTCCCTGTCGCCTTTCGC+CGG + chr2_1:72411690-72411709 Msa0222990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 72410965 72413253 72410965 ID=Msa0222990;Name=Msa0222990
chr2_1 mRNA 72410965 72413253 72410965 ID=Msa0222990-mRNA-1;Parent=Msa0222990;Name=Msa0222990-mRNA-1;_AED=0.04;_eAED=0.04;_QI=130|1|1|1|1|1|3|575|260
chr2_1 exon 72410965 72411248 72410965 ID=Msa0222990-mRNA-1:exon:20952;Parent=Msa0222990-mRNA-1
chr2_1 exon 72411393 72411711 72411393 ID=Msa0222990-mRNA-1:exon:20953;Parent=Msa0222990-mRNA-1
chr2_1 exon 72412369 72413253 72412369 ID=Msa0222990-mRNA-1:exon:20954;Parent=Msa0222990-mRNA-1
chr2_1 five_prime_UTR 72410965 72411094 72410965 ID=Msa0222990-mRNA-1:five_prime_utr;Parent=Msa0222990-mRNA-1
chr2_1 CDS 72411095 72411248 72411095 ID=Msa0222990-mRNA-1:cds;Parent=Msa0222990-mRNA-1
chr2_1 CDS 72411393 72411711 72411393 ID=Msa0222990-mRNA-1:cds;Parent=Msa0222990-mRNA-1
chr2_1 CDS 72412369 72412678 72412369 ID=Msa0222990-mRNA-1:cds;Parent=Msa0222990-mRNA-1
chr2_1 three_prime_UTR 72412679 72413253 72412679 ID=Msa0222990-mRNA-1:three_prime_utr;Parent=Msa0222990-mRNA-1
Gene Sequence

>Msa0222990

ATGGGTATGGGGAGTATGGTTTACATTGTGACTCTTATTATGTCACTAACAATGTGGATGGTAAATGCTAGAATCCCAGGTGTTTACAATGGTGGTGCATGGCAAACAGCTCATGCCACTTTTTACGGAGGTTCCGATGCTTCCGGCACCATGGGAGGAGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGAGTTAACACAGCAGCATTAAGCACAGCACTATTCAACAATGGACTAAGTTGTGGTTCTTGTTTTGAATTGAAGTGTGCAAATGACAAGCAGTGGTGTCATTCTGGTAGCCCTTCCATTTTCATCACAGCAACTAACTTTTGTCCTCCTAATTTTGCTCAACCTAGTGACAATGGTGGTTGGTGTAACCCTCCTCGTCCTCACTTTGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAATATCGCGCCGGAATCGTCCCTGTCGCCTTTCGCCGGGTGCCATGTAGGAAGCGTGGTGGGATTAGGTTCACAATAAACGGATTCCGTTACTTTAACTTAGTCCTAATCAGCAACGTTGCAGGTGCAGGGGATATAGTGAGGACCTATGTTAAGGGCACTAAAACAGGGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCAAATTCAGTTTTGGTGGGTCAAGCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCTCCACATAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTTCGTGTTTGA
Protein sequence

>Msa0222990

MGMGSMVYIVTLIMSLTMWMVNARIPGVYNGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCANDKQWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTKTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNIAPHNWQFGQTFTGKNFRV*