AlfalfaGEDB | Msa1427210

M. sativa cultivar zhongmu-4 / Msa1427210

KEGG: -
GO: -
PFAM: PF03330.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427210	XP_013465412.1	98.824	255	3	0	1	255	6	260	0.0	525

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427210	sp\|O48818\|EXPA4_ARATH	83.137	255	42	1	2	255	3	257	3.10e-162	452

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427210	A0A072VCF4	98.824	255	3	0	1	255	6	260	0.0	525

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034280	Msa1427210	0.817291	3.559445e-52	-8.615850e-47
Msa0210930	Msa1427210	0.980789	4.903075e-151	-8.615850e-47
Msa0222990	Msa1427210	0.996927	2.984328e-234	-8.615850e-47
Msa0302380	Msa1427210	0.843421	1.416220e-58	-8.615850e-47
Msa0339640	Msa1427210	0.810776	9.742579e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427210	MtrunA17_Chr2g0328261	98.824	255	3	0	1	255	6	260	0.0	525
Msa1427210	MtrunA17_Chr5g0435311	86.694	248	33	0	8	255	61	308	3.49e-165	459
Msa1427210	MtrunA17_Chr4g0031621	88.627	255	28	1	1	255	5	258	5.26e-163	451
Msa1427210	MtrunA17_Chr7g0238681	88.235	238	28	0	18	255	21	258	1.21e-159	443
Msa1427210	MtrunA17_Chr3g0128801	67.451	255	79	2	1	253	1	253	1.04e-126	359
Msa1427210	MtrunA17_Chr3g0128791	67.451	255	79	2	1	253	1	253	1.96e-126	358
Msa1427210	MtrunA17_Chr5g0417701	72.926	229	60	1	26	254	22	248	4.21e-125	355
Msa1427210	MtrunA17_Chr4g0042521	69.444	252	67	4	1	250	1	244	1.01e-123	352
Msa1427210	MtrunA17_Chr5g0432611	67.600	250	76	3	6	253	5	251	4.24e-122	348
Msa1427210	MtrunA17_Chr3g0107311	67.460	252	78	3	3	253	6	254	3.62e-119	340

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427210	AT2G39700.1	83.137	255	42	1	2	255	3	257	3.15e-163	452
Msa1427210	AT2G28950.1	85.490	255	37	0	1	255	3	257	3.79e-159	442
Msa1427210	AT3G55500.1	78.039	255	56	0	1	255	6	260	2.04e-154	430
Msa1427210	AT2G37640.1	78.486	251	54	0	5	255	12	262	2.79e-151	422
Msa1427210	AT5G02260.1	77.419	248	56	0	8	255	11	258	5.13e-148	414
Msa1427210	AT2G37640.2	80.952	210	40	0	46	255	28	237	3.71e-130	368
Msa1427210	AT1G69530.2	67.729	251	78	2	4	254	3	250	2.07e-122	349
Msa1427210	AT1G69530.1	67.729	251	78	2	4	254	3	250	2.07e-122	349
Msa1427210	AT1G69530.3	67.331	251	79	2	4	254	3	250	4.96e-121	346
Msa1427210	AT5G56320.1	65.234	256	85	3	1	255	1	253	6.98e-120	342

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Find 103 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGCTGAATATCGCGC+CGG	0.661509	tig0026171:+48330	Msa1427210:CDS
AAAGGCGACAGGGACGATTC+CGG	0.402838	tig0026171:-48349	None:intergenic
AAAGTGGATAATTAAAGGAG+TGG	0.590383	tig0026171:+49555	Msa1427210:three_prime_UTR
AACCCTATGAAAGTTCAAAT+TGG	0.295692	tig0026171:+49793	Msa1427210:three_prime_UTR
AACCTAGTGACAATGGTGGT+TGG	0.618881	tig0026171:+48259	Msa1427210:CDS
AACTTGTATAGTCAAGGTTA+TGG	0.443205	tig0026171:+48078	Msa1427210:CDS
AAGTGTAGGAAATGTTGAAG+TGG	0.584474	tig0026171:+49670	Msa1427210:three_prime_UTR
AATGGAAAAGATTAGGGTAG+AGG	0.486775	tig0026171:+49624	Msa1427210:three_prime_UTR
ACAAACCGGCGAAAGGCGAC+AGG	0.470017	tig0026171:-48360	None:intergenic
ACCCATGGTGCCGGAAGCAT+CGG	0.533485	tig0026171:-47893	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGGAAACTTGTATAGTCA+AGG	+	tig0026171:48072-48091	Msa1427210:CDS	30.0%
AACTTGTATAGTCAAGGTTA+TGG	+	tig0026171:48078-48097	Msa1427210:CDS	30.0%
GAGCAAATAAGCAAAAATGT+AGG	-	tig0026171:48388-48407	None:intergenic	30.0%
AAACAAACACTTGATGTCAT+CGG	-	tig0026171:48437-48456	None:intergenic	30.0%
TGTGATAGATCTCAATGATA+AGG	+	tig0026171:48545-48564	Msa1427210:intron	30.0%
ATAAATTGGTAAGACCATGT+TGG	+	tig0026171:48611-48630	Msa1427210:intron	30.0%
TTTCGTGTTTGATTGATCAA+TGG	+	tig0026171:49332-49351	Msa1427210:exon	30.0%
TCAAAAAGAACACCAATCTA+TGG	-	tig0026171:49493-49512	None:intergenic	30.0%
TATAGAAATGTGTGTCAAAG+TGG	+	tig0026171:49539-49558	Msa1427210:three_prime_UTR	30.0%
GTGTCAAAGTGGATAATTAA+AGG	+	tig0026171:49550-49569	Msa1427210:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026171	gene	47632	49918	47632	ID=Msa1427210;Name=Msa1427210
tig0026171	mRNA	47632	49918	47632	ID=Msa1427210-mRNA-1;Parent=Msa1427210;Name=Msa1427210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=143\|1\|1\|1\|1\|1\|3\|575\|255
tig0026171	exon	47632	47913	47632	ID=Msa1427210-mRNA-1:exon:5290;Parent=Msa1427210-mRNA-1
tig0026171	exon	48058	48376	48058	ID=Msa1427210-mRNA-1:exon:5291;Parent=Msa1427210-mRNA-1
tig0026171	exon	49034	49918	49034	ID=Msa1427210-mRNA-1:exon:5292;Parent=Msa1427210-mRNA-1
tig0026171	five_prime_UTR	47632	47774	47632	ID=Msa1427210-mRNA-1:five_prime_utr;Parent=Msa1427210-mRNA-1
tig0026171	CDS	47775	47913	47775	ID=Msa1427210-mRNA-1:cds;Parent=Msa1427210-mRNA-1
tig0026171	CDS	48058	48376	48058	ID=Msa1427210-mRNA-1:cds;Parent=Msa1427210-mRNA-1
tig0026171	CDS	49034	49343	49034	ID=Msa1427210-mRNA-1:cds;Parent=Msa1427210-mRNA-1
tig0026171	three_prime_UTR	49344	49918	49344	ID=Msa1427210-mRNA-1:three_prime_utr;Parent=Msa1427210-mRNA-1

Gene Sequence

>Msa1427210

ATGGTTTACATTGTGACTCTTATTATGTCACTAACAATGTGGATGGTAAATGCTAGAATCCCAGGTGTTTACAATGGTGGTGCATGGCAAACAGCTCATGCCACTTTTTACGGAGGTTCCGATGCTTCCGGCACCATGGGAGGAGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGAGTTAACACAGCAGCATTAAGCACAGCACTATTCAACAATGGACTAAGTTGTGGTTCTTGTTTTGAATTGAAGTGTGCAAATGACAAGCAGTGGTGTCATTCTGGTAGCCCTTCCATTTTCATCACAGCAACTAACTTTTGTCCTCCTAATTTTGCTCAACCTAGTGACAATGGTGGTTGGTGTAACCCTCCTCGTCCTCACTTTGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAATATCGCGCCGGAATCGTCCCTGTCGCCTTTCGCCGGGTGCCATGTAGGAAGCGTGGTGGGATTAGGTTCACAATAAACGGATTCCGTTACTTTAACTTAGTCCTAATCAGCAACGTTGCAGGTGCAGGGGATATAGTGAGGACCTATGTTAAGGGCACTAAAACAGGGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCAAATTCAGTTTTGGTGGGTCAAGCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCTCCACATAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTTCGTGTTTGA

Protein sequence

>Msa1427210

MVYIVTLIMSLTMWMVNARIPGVYNGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCANDKQWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTKTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNIAPHNWQFGQTFTGKNFRV*