AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1427210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427210 MtrunA17_Chr2g0328261 98.824 255 3 0 1 255 6 260 0.0 525
Msa1427210 MtrunA17_Chr5g0435311 86.694 248 33 0 8 255 61 308 3.49e-165 459
Msa1427210 MtrunA17_Chr4g0031621 88.627 255 28 1 1 255 5 258 5.26e-163 451
Msa1427210 MtrunA17_Chr7g0238681 88.235 238 28 0 18 255 21 258 1.21e-159 443
Msa1427210 MtrunA17_Chr3g0128801 67.451 255 79 2 1 253 1 253 1.04e-126 359
Msa1427210 MtrunA17_Chr3g0128791 67.451 255 79 2 1 253 1 253 1.96e-126 358
Msa1427210 MtrunA17_Chr5g0417701 72.926 229 60 1 26 254 22 248 4.21e-125 355
Msa1427210 MtrunA17_Chr4g0042521 69.444 252 67 4 1 250 1 244 1.01e-123 352
Msa1427210 MtrunA17_Chr5g0432611 67.600 250 76 3 6 253 5 251 4.24e-122 348
Msa1427210 MtrunA17_Chr3g0107311 67.460 252 78 3 3 253 6 254 3.62e-119 340
Msa1427210 MtrunA17_Chr3g0107291 66.403 253 79 2 1 253 14 260 3.74e-119 340
Msa1427210 MtrunA17_Chr3g0092071 71.111 225 63 1 29 253 25 247 4.64e-119 340
Msa1427210 MtrunA17_Chr7g0217661 63.563 247 80 2 7 253 4 240 4.56e-112 322
Msa1427210 MtrunA17_Chr1g0193631 66.079 227 73 3 28 251 29 254 9.93e-108 311
Msa1427210 MtrunA17_Chr7g0271001 59.761 251 95 4 1 248 1 248 6.35e-107 309
Msa1427210 MtrunA17_Chr4g0069711 59.031 227 90 2 27 252 59 283 7.25e-102 298
Msa1427210 MtrunA17_Chr6g0453341 61.265 253 87 3 1 253 11 252 3.25e-99 290
Msa1427210 MtrunA17_Chr1g0157061 64.220 218 75 2 36 251 22 238 4.09e-98 286
Msa1427210 MtrunA17_Chr7g0218751 59.009 222 89 1 29 250 28 247 8.56e-95 278
Msa1427210 MtrunA17_Chr8g0360041 57.658 222 92 1 29 250 31 250 7.70e-94 276
Msa1427210 MtrunA17_Chr7g0218741 56.696 224 94 2 29 251 29 250 2.48e-93 275
Msa1427210 MtrunA17_Chr4g0057091 51.587 252 119 3 5 254 12 262 4.39e-92 272
Msa1427210 MtrunA17_Chr5g0398271 50.602 249 121 2 4 251 12 259 5.71e-92 272
Msa1427210 MtrunA17_Chr7g0218761 60.294 204 79 1 48 251 8 209 7.07e-89 262
Msa1427210 MtrunA17_Chr5g0433841 55.111 225 100 1 29 253 41 264 3.41e-88 262
Msa1427210 MtrunA17_Chr8g0360721 59.701 201 79 1 48 248 17 215 5.67e-88 260
Msa1427210 MtrunA17_Chr4g0021561 46.825 252 131 1 2 253 8 256 1.28e-86 258
Msa1427210 MtrunA17_Chr3g0109801 53.846 234 99 5 29 254 53 285 2.63e-81 245
Msa1427210 MtrunA17_Chr4g0022841 61.207 116 45 0 135 250 1 116 7.57e-45 147
Msa1427210 MtrunA17_Chr4g0022851 53.968 126 51 2 1 126 7 125 6.25e-42 139
Msa1427210 MtrunA17_Chr2g0324191 43.846 130 73 0 24 153 23 152 2.07e-40 136
Msa1427210 MtrunA17_Chr2g0324181 57.426 101 43 0 153 253 17 117 1.14e-34 120
Msa1427210 MtrunA17_Chr2g0324221 27.863 262 162 10 2 251 9 255 2.81e-23 95.1
Msa1427210 MtrunA17_Chr4g0021641 30.638 235 137 11 29 251 41 261 5.37e-21 89.4
Msa1427210 MtrunA17_Chr2g0324201 27.863 262 160 11 5 251 6 253 1.10e-20 88.2
Msa1427210 MtrunA17_Chr8g0359981 48.837 86 35 4 71 153 2 81 4.04e-20 83.2
Msa1427210 MtrunA17_Chr8g0359971 46.250 80 42 1 174 252 1 80 9.46e-20 80.9
Msa1427210 MtrunA17_Chr4g0012801 29.661 236 131 11 29 248 42 258 1.55e-19 85.1
Msa1427210 MtrunA17_Chr7g0231221 29.870 231 132 12 34 248 53 269 3.00e-17 79.0
Msa1427210 MtrunA17_Chr7g0231211 27.966 236 136 12 29 248 47 264 9.59e-16 74.7
Msa1427210 MtrunA17_Chr1g0193571 55.932 59 25 1 198 255 4 62 1.06e-13 64.3
Msa1427210 MtrunA17_Chr4g0038741 26.667 225 130 9 40 248 32 237 1.97e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427210 AT2G39700.1 83.137 255 42 1 2 255 3 257 3.15e-163 452
Msa1427210 AT2G28950.1 85.490 255 37 0 1 255 3 257 3.79e-159 442
Msa1427210 AT3G55500.1 78.039 255 56 0 1 255 6 260 2.04e-154 430
Msa1427210 AT2G37640.1 78.486 251 54 0 5 255 12 262 2.79e-151 422
Msa1427210 AT5G02260.1 77.419 248 56 0 8 255 11 258 5.13e-148 414
Msa1427210 AT2G37640.2 80.952 210 40 0 46 255 28 237 3.71e-130 368
Msa1427210 AT1G69530.2 67.729 251 78 2 4 254 3 250 2.07e-122 349
Msa1427210 AT1G69530.1 67.729 251 78 2 4 254 3 250 2.07e-122 349
Msa1427210 AT1G69530.3 67.331 251 79 2 4 254 3 250 4.96e-121 346
Msa1427210 AT5G56320.1 65.234 256 85 3 1 255 1 253 6.98e-120 342
Msa1427210 AT5G56320.2 65.234 256 85 3 1 255 1 253 6.98e-120 342
Msa1427210 AT2G03090.1 70.996 231 64 2 24 254 26 253 2.01e-119 341
Msa1427210 AT5G56320.3 65.234 256 85 3 1 255 1 253 2.93e-119 343
Msa1427210 AT5G05290.1 63.780 254 84 3 1 253 9 255 1.31e-118 339
Msa1427210 AT2G40610.1 69.565 230 67 2 25 253 26 253 1.55e-115 332
Msa1427210 AT1G26770.2 69.796 245 71 2 11 254 17 259 1.78e-114 329
Msa1427210 AT1G26770.1 69.796 245 71 2 11 254 7 249 2.20e-114 328
Msa1427210 AT3G29030.1 66.372 226 67 2 29 254 38 254 2.58e-107 311
Msa1427210 AT4G01630.1 62.097 248 85 5 4 248 8 249 4.86e-107 310
Msa1427210 AT1G69530.4 61.355 251 64 3 4 254 3 220 3.30e-106 306
Msa1427210 AT1G69530.5 60.956 251 65 3 4 254 3 220 6.16e-105 304
Msa1427210 AT1G20190.1 63.927 219 76 2 33 249 30 247 3.09e-99 290
Msa1427210 AT5G39290.1 51.095 274 107 4 1 251 7 276 2.43e-95 281
Msa1427210 AT5G39270.1 51.095 274 107 4 1 251 7 276 4.02e-95 281
Msa1427210 AT1G62980.1 53.386 251 114 3 2 251 5 253 3.91e-92 272
Msa1427210 AT5G39300.1 51.136 264 112 5 1 251 14 273 7.47e-91 270
Msa1427210 AT5G39280.1 56.250 224 94 2 28 251 53 272 1.77e-90 269
Msa1427210 AT1G12560.1 54.008 237 105 4 20 254 28 262 7.29e-89 264
Msa1427210 AT3G03220.1 53.744 227 104 1 29 255 40 265 6.67e-87 259
Msa1427210 AT5G39310.1 55.357 224 95 3 29 251 90 309 2.96e-85 257
Msa1427210 AT4G38210.1 45.968 248 132 1 9 254 8 255 1.98e-79 240
Msa1427210 AT1G20190.2 60.106 188 72 2 64 249 2 188 2.89e-78 234
Msa1427210 AT3G15370.1 47.638 254 117 7 2 251 6 247 3.54e-75 229
Msa1427210 AT5G39260.1 52.000 225 98 3 28 251 44 259 8.29e-75 228
Msa1427210 AT3G15370.2 42.756 283 116 8 3 251 7 277 1.15e-68 213
Msa1427210 AT4G28250.1 30.085 236 138 10 29 251 36 257 1.40e-22 93.6
Msa1427210 AT2G20750.1 29.958 237 140 10 29 251 40 264 1.24e-21 91.3
Msa1427210 AT1G65680.1 30.213 235 135 11 29 248 47 267 2.06e-20 88.2
Msa1427210 AT4G28250.2 28.936 235 136 10 29 251 36 251 7.12e-19 83.6
Msa1427210 AT2G20750.2 30.857 175 99 7 29 192 40 203 8.57e-15 71.6
Msa1427210 AT4G28250.4 31.073 177 93 8 29 195 36 193 1.56e-13 68.2
Msa1427210 AT3G45970.2 25.352 213 137 9 47 248 14 215 3.68e-13 67.4
Msa1427210 AT3G60570.1 23.954 263 171 8 7 255 12 259 5.55e-13 67.4
Msa1427210 AT4G28250.3 31.034 174 91 8 29 192 36 190 5.58e-13 66.6
Msa1427210 AT4G17030.1 25.100 251 165 9 8 248 6 243 2.57e-12 65.5

Find 103 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGGGTAGAGGAGTTATT+TGG 0.226107 tig0026171:+49634 Msa1427210:three_prime_UTR
TTTCCAATTTGAACTTTCAT+AGG 0.238828 tig0026171:-49796 None:intergenic
ACCGTCGCACTTCCACTTCT+TGG 0.241176 tig0026171:+49258 Msa1427210:CDS
GGAACATTGCTCCACATAAT+TGG 0.246045 tig0026171:+49279 Msa1427210:CDS
GCTCCACATAATTGGCAATT+TGG 0.259736 tig0026171:+49287 Msa1427210:CDS
TCACTAGGTTGAGCAAAATT+AGG 0.282502 tig0026171:-48246 None:intergenic
AACCCTATGAAAGTTCAAAT+TGG 0.295692 tig0026171:+49793 Msa1427210:three_prime_UTR
CAGAAATGGGTATGGGAGTA+TGG 0.297149 tig0026171:+47756 Msa1427210:exon
TTGGCAATCAAATTCAGTTT+TGG 0.302765 tig0026171:+49199 Msa1427210:CDS
GACAAGCAGTGGTGTCATTC+TGG 0.336967 tig0026171:+48183 Msa1427210:CDS
TATGTTAAGGGCACTAAAAC+AGG 0.337612 tig0026171:+49143 Msa1427210:CDS
GGATGCCAATGAGCAGAAAC+TGG 0.338905 tig0026171:+49168 Msa1427210:CDS
GTTAGTTGCTGTGATGAAAA+TGG 0.339967 tig0026171:-48214 None:intergenic
TTAGGAGGAGCATGTGGATA+TGG 0.344997 tig0026171:+48054 Msa1427210:intron
GTCCTAATCAGCAACGTTGC+AGG 0.348958 tig0026171:+49098 Msa1427210:CDS
GTGTCAAAGTGGATAATTAA+AGG 0.352597 tig0026171:+49550 Msa1427210:three_prime_UTR
GGAACAGAGAGAAAGAGATA+TGG 0.360476 tig0026171:-47655 None:intergenic
GTAGGAAGCGTGGTGGGATT+AGG 0.372081 tig0026171:+49042 Msa1427210:CDS
CACCTGCAACGTTGCTGATT+AGG 0.375478 tig0026171:-49100 None:intergenic
GCTTTGTCCTTCAGAGTTAC+CGG 0.383935 tig0026171:+49230 Msa1427210:CDS
CAATTTGGTCAAACTTTCAC+TGG 0.389947 tig0026171:+49302 Msa1427210:CDS
ATCAGCAACGTTGCAGGTGC+AGG 0.391465 tig0026171:+49104 Msa1427210:CDS
AGCAGTATCATAATGTTTGT+TGG 0.397550 tig0026171:+49878 Msa1427210:three_prime_UTR
GGGATTAGGTTCACAATAAA+CGG 0.397891 tig0026171:+49056 Msa1427210:CDS
AAAGGCGACAGGGACGATTC+CGG 0.402838 tig0026171:-48349 None:intergenic
TACGGAGGTTCCGATGCTTC+CGG 0.415576 tig0026171:+47883 Msa1427210:CDS
TATAGTGAGGACCTATGTTA+AGG 0.434796 tig0026171:+49130 Msa1427210:CDS
AACTTGTATAGTCAAGGTTA+TGG 0.443205 tig0026171:+48078 Msa1427210:CDS
TTTCGTGTTTGATTGATCAA+TGG 0.444722 tig0026171:+49332 Msa1427210:exon
GAACAGAGAGAAAGAGATAT+GGG 0.447162 tig0026171:-47654 None:intergenic
TCGTCCCTGTCGCCTTTCGC+CGG 0.466817 tig0026171:+48355 Msa1427210:CDS
TGACCAAATTGCCAATTATG+TGG 0.467767 tig0026171:-49290 None:intergenic
ACAAACCGGCGAAAGGCGAC+AGG 0.470017 tig0026171:-48360 None:intergenic
GGTAGAGGAGTTATTTGGAA+AGG 0.475636 tig0026171:+49639 Msa1427210:three_prime_UTR
TTCCAATTTGAACTTTCATA+GGG 0.483127 tig0026171:-49795 None:intergenic
AATGGAAAAGATTAGGGTAG+AGG 0.486775 tig0026171:+49624 Msa1427210:three_prime_UTR
TCCGATGCTTCCGGCACCAT+GGG 0.492789 tig0026171:+47892 Msa1427210:CDS
TATAGAAATGTGTGTCAAAG+TGG 0.512839 tig0026171:+49539 Msa1427210:three_prime_UTR
ATCCCACCACGCTTCCTACA+TGG 0.515202 tig0026171:-49038 None:intergenic
TAACAACCAACACACCTCAA+TGG 0.517555 tig0026171:-49771 None:intergenic
ATAGTGAGGACCTATGTTAA+GGG 0.521329 tig0026171:+49131 Msa1427210:CDS
GCACCACCATTGTAAACACC+TGG 0.523553 tig0026171:-47835 None:intergenic
ACCCATGGTGCCGGAAGCAT+CGG 0.533485 tig0026171:-47893 None:intergenic
TGGAGCAATGTTCCAAGAAG+TGG 0.536985 tig0026171:-49270 None:intergenic
TTGTATAACTAATTAGCTGC+GGG 0.539425 tig0026171:-49710 None:intergenic
GTACTACATCCCCACTCAAA+GGG 0.551778 tig0026171:-49854 None:intergenic
AGAGATATGGGTGGAACGAG+TGG 0.558962 tig0026171:-47642 None:intergenic
GATGCCAATGAGCAGAAACT+GGG 0.559055 tig0026171:+49169 Msa1427210:CDS
ATGTATCCATTGAGGTGTGT+TGG 0.560476 tig0026171:+49765 Msa1427210:three_prime_UTR
TCAGCAACGTTGCAGGTGCA+GGG 0.562393 tig0026171:+49105 Msa1427210:CDS
TTACTTGCCACGTAGGTCAC+TGG 0.562722 tig0026171:+49355 Msa1427210:three_prime_UTR
TTCCGATGCTTCCGGCACCA+TGG 0.566242 tig0026171:+47891 Msa1427210:CDS
TTCAACAATGGACTAAGTTG+TGG 0.574416 tig0026171:+48132 Msa1427210:CDS
GTAGGGTACAAACCGGCGAA+AGG 0.576269 tig0026171:-48367 None:intergenic
ATGGTAAATGCTAGAATCCC+AGG 0.576542 tig0026171:+47817 Msa1427210:CDS
TGTACTACATCCCCACTCAA+AGG 0.576635 tig0026171:-49855 None:intergenic
GGAAGTGCGACGGTCACTAC+CGG 0.579926 tig0026171:-49249 None:intergenic
CACCAACCACCATTGTCACT+AGG 0.581152 tig0026171:-48261 None:intergenic
AAGTGTAGGAAATGTTGAAG+TGG 0.584474 tig0026171:+49670 Msa1427210:three_prime_UTR
ATTGTATAACTAATTAGCTG+CGG 0.584992 tig0026171:-49711 None:intergenic
TATGGAAACTTGTATAGTCA+AGG 0.585100 tig0026171:+48072 Msa1427210:CDS
GTCACTACCGGTAACTCTGA+AGG 0.588519 tig0026171:-49237 None:intergenic
AAAGTGGATAATTAAAGGAG+TGG 0.590383 tig0026171:+49555 Msa1427210:three_prime_UTR
ATCCCAGGTGTTTACAATGG+TGG 0.596482 tig0026171:+47832 Msa1427210:CDS
TAGGAAATGTTGAAGTGGCT+AGG 0.607621 tig0026171:+49675 Msa1427210:three_prime_UTR
ACTAGACGTACCCATGGTGC+CGG 0.607745 tig0026171:-47902 None:intergenic
TTTGCTCAACCTAGTGACAA+TGG 0.609073 tig0026171:+48252 Msa1427210:CDS
GCAAGATCAAAGTGAGGACG+AGG 0.609633 tig0026171:-48291 None:intergenic
TCCAAGAAGTGGAAGTGCGA+CGG 0.611335 tig0026171:-49259 None:intergenic
TATGTCACTAACAATGTGGA+TGG 0.613645 tig0026171:+47798 Msa1427210:CDS
AACCTAGTGACAATGGTGGT+TGG 0.618881 tig0026171:+48259 Msa1427210:CDS
CAGCAACGTTGCAGGTGCAG+GGG 0.618959 tig0026171:+49106 Msa1427210:CDS
GATTATGCAGGGTGCCATGT+AGG 0.619428 tig0026171:+49024 Msa1427210:intron
TGCCATGTAGGAAGCGTGGT+GGG 0.620597 tig0026171:+49036 Msa1427210:CDS
TTAGGACTAAGTTAAAGTAA+CGG 0.623009 tig0026171:-49082 None:intergenic
GTGTGTTTAGGAGGAGCATG+TGG 0.626776 tig0026171:+48048 Msa1427210:intron
AGATCAAAGTGAGGACGAGG+AGG 0.633474 tig0026171:-48288 None:intergenic
CTAGGTTGAGCAAAATTAGG+AGG 0.633552 tig0026171:-48243 None:intergenic
CAAACCGGCGAAAGGCGACA+GGG 0.633653 tig0026171:-48359 None:intergenic
CAGAGAGAAAGAGATATGGG+TGG 0.647807 tig0026171:-47651 None:intergenic
CACCACCATTGTAAACACCT+GGG 0.648144 tig0026171:-47834 None:intergenic
ATTGCTCTATGTATCCATTG+AGG 0.651374 tig0026171:+49757 Msa1427210:three_prime_UTR
GTGTTTACAATGGTGGTGCA+TGG 0.652108 tig0026171:+47839 Msa1427210:CDS
AGCACAGCACTATTCAACAA+TGG 0.654867 tig0026171:+48120 Msa1427210:CDS
GTGCCATGTAGGAAGCGTGG+TGG 0.655283 tig0026171:+49035 Msa1427210:CDS
AGAATCCCAGGTGTTTACAA+TGG 0.660050 tig0026171:+47829 Msa1427210:CDS
GTTGCTGTGATGAAAATGGA+AGG 0.660102 tig0026171:-48210 None:intergenic
AAAATCGCTGAATATCGCGC+CGG 0.661509 tig0026171:+48330 Msa1427210:CDS
ATGTTAAGGGCACTAAAACA+GGG 0.661896 tig0026171:+49144 Msa1427210:CDS
TCAATGGTTACTTGCCACGT+AGG 0.663827 tig0026171:+49348 Msa1427210:three_prime_UTR
TTATTATGTCACTAACAATG+TGG 0.670910 tig0026171:+47794 Msa1427210:CDS
CAGGTGCAGGGGATATAGTG+AGG 0.673660 tig0026171:+49117 Msa1427210:CDS
ATGCCAATGAGCAGAAACTG+GGG 0.677827 tig0026171:+49170 Msa1427210:CDS
GATCAAAGTGAGGACGAGGA+GGG 0.681799 tig0026171:-48287 None:intergenic
AGGGTGCCATGTAGGAAGCG+TGG 0.699181 tig0026171:+49032 Msa1427210:intron
TGCCAATGAGCAGAAACTGG+GGG 0.704067 tig0026171:+49171 Msa1427210:CDS
TTGCTGTGATGAAAATGGAA+GGG 0.708603 tig0026171:-48209 None:intergenic
TGTTTGTTGGAAGAAATGCA+AGG 0.709674 tig0026171:+49891 Msa1427210:three_prime_UTR
GGCATGGCAAGATCAAAGTG+AGG 0.710022 tig0026171:-48297 None:intergenic
GCTCAACCTAGTGACAATGG+TGG 0.714318 tig0026171:+48255 Msa1427210:CDS
AGTGTGCAAATGACAAGCAG+TGG 0.728732 tig0026171:+48172 Msa1427210:CDS
TTAAGGGCACTAAAACAGGG+TGG 0.761599 tig0026171:+49147 Msa1427210:CDS
ACTTTGACCAGTGACCTACG+TGG 0.826698 tig0026171:-49362 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGATTTAGTTTAAAAAAAT+TGG - tig0026171:47719-47738 None:intergenic 10.0%
!!! TAGATTTAGTTTAAAAAAAT+TGG - tig0026171:47719-47738 None:intergenic 10.0%
!!! AATAAGAAGTATATAGATAA+TGG + tig0026171:48584-48603 Msa1427210:intron 15.0%
!!! ATAAGAAGTATATAGATAAT+GGG + tig0026171:48585-48604 Msa1427210:intron 15.0%
!!! ATATATAAGCACTTTTATTA+GGG - tig0026171:48692-48711 None:intergenic 15.0%
!!! TATATATAAGCACTTTTATT+AGG - tig0026171:48693-48712 None:intergenic 15.0%
!! AAACTTAAAATAGTTTATGA+AGG + tig0026171:48806-48825 Msa1427210:intron 15.0%
!!! TTTTAGATTTGTATGAAAAA+TGG + tig0026171:49606-49625 Msa1427210:three_prime_UTR 15.0%
!!! AATAAGAAGTATATAGATAA+TGG + tig0026171:48584-48603 Msa1427210:intron 15.0%
!!! ATAAGAAGTATATAGATAAT+GGG + tig0026171:48585-48604 Msa1427210:intron 15.0%
!!! ATATATAAGCACTTTTATTA+GGG - tig0026171:48692-48711 None:intergenic 15.0%
!!! TATATATAAGCACTTTTATT+AGG - tig0026171:48693-48712 None:intergenic 15.0%
!! AAACTTAAAATAGTTTATGA+AGG + tig0026171:48806-48825 Msa1427210:intron 15.0%
!!! TTTTAGATTTGTATGAAAAA+TGG + tig0026171:49606-49625 Msa1427210:three_prime_UTR 15.0%
!! AGAAGAAAAAAAAACAGAAA+TGG + tig0026171:47742-47761 Msa1427210:five_prime_UTR 20.0%
!! GAAGAAAAAAAAACAGAAAT+GGG + tig0026171:47743-47762 Msa1427210:five_prime_UTR 20.0%
!!! TGCTCTATTAAAATTGATTT+TGG + tig0026171:48403-48422 Msa1427210:intron 20.0%
!! TAAATGACTTGAATGTTAAA+TGG + tig0026171:48518-48537 Msa1427210:intron 20.0%
!! ATTAGTTATTTATTCCAACA+TGG - tig0026171:48628-48647 None:intergenic 20.0%
!! TATGAAAAATGGAAAAGATT+AGG + tig0026171:49617-49636 Msa1427210:three_prime_UTR 20.0%
!! ATGAAAAATGGAAAAGATTA+GGG + tig0026171:49618-49637 Msa1427210:three_prime_UTR 20.0%
!! AGAAGAAAAAAAAACAGAAA+TGG + tig0026171:47742-47761 Msa1427210:five_prime_UTR 20.0%
!! GAAGAAAAAAAAACAGAAAT+GGG + tig0026171:47743-47762 Msa1427210:five_prime_UTR 20.0%
!!! TGCTCTATTAAAATTGATTT+TGG + tig0026171:48403-48422 Msa1427210:intron 20.0%
!! TAAATGACTTGAATGTTAAA+TGG + tig0026171:48518-48537 Msa1427210:intron 20.0%
!! ATTAGTTATTTATTCCAACA+TGG - tig0026171:48628-48647 None:intergenic 20.0%
!! TATGAAAAATGGAAAAGATT+AGG + tig0026171:49617-49636 Msa1427210:three_prime_UTR 20.0%
!! ATGAAAAATGGAAAAGATTA+GGG + tig0026171:49618-49637 Msa1427210:three_prime_UTR 20.0%
! AAAAAATAGAGAAAAAGCAG+AGG - tig0026171:47684-47703 None:intergenic 25.0%
! TTAAAAAAATTGGACAGTTG+AGG - tig0026171:47709-47728 None:intergenic 25.0%
! AAAAAAAACAGAAATGGGTA+TGG + tig0026171:47748-47767 Msa1427210:five_prime_UTR 25.0%
! AAAAAAACAGAAATGGGTAT+GGG + tig0026171:47749-47768 Msa1427210:five_prime_UTR 25.0%
! TTATTATGTCACTAACAATG+TGG + tig0026171:47794-47813 Msa1427210:CDS 25.0%
! AGCAAATAAGCAAAAATGTA+GGG - tig0026171:48387-48406 None:intergenic 25.0%
!!! TAGATAATGGGAGAATAAAT+TGG + tig0026171:48597-48616 Msa1427210:intron 25.0%
! GAAAACATCTTATGACTTAT+AGG - tig0026171:48757-48776 None:intergenic 25.0%
!!! TTTTCTTAACTTCTTTGAAG+TGG - tig0026171:48785-48804 None:intergenic 25.0%
!! GGATTGACATAATTTTTGTT+AGG - tig0026171:48895-48914 None:intergenic 25.0%
!! AAGTAAATAAGCCTTATCTA+AGG - tig0026171:48925-48944 None:intergenic 25.0%
!!! TTTTGTTATGTTGATTATGC+AGG + tig0026171:49012-49031 Msa1427210:intron 25.0%
!! TTTGTTATGTTGATTATGCA+GGG + tig0026171:49013-49032 Msa1427210:intron 25.0%
! TTAGGACTAAGTTAAAGTAA+CGG - tig0026171:49085-49104 None:intergenic 25.0%
! ATTGTATAACTAATTAGCTG+CGG - tig0026171:49714-49733 None:intergenic 25.0%
! TTCCAATTTGAACTTTCATA+GGG - tig0026171:49798-49817 None:intergenic 25.0%
! TTTCCAATTTGAACTTTCAT+AGG - tig0026171:49799-49818 None:intergenic 25.0%
! AAAAAATAGAGAAAAAGCAG+AGG - tig0026171:47684-47703 None:intergenic 25.0%
! TTAAAAAAATTGGACAGTTG+AGG - tig0026171:47709-47728 None:intergenic 25.0%
! AAAAAAAACAGAAATGGGTA+TGG + tig0026171:47748-47767 Msa1427210:five_prime_UTR 25.0%
! AAAAAAACAGAAATGGGTAT+GGG + tig0026171:47749-47768 Msa1427210:five_prime_UTR 25.0%
! TTATTATGTCACTAACAATG+TGG + tig0026171:47794-47813 Msa1427210:CDS 25.0%
! AGCAAATAAGCAAAAATGTA+GGG - tig0026171:48387-48406 None:intergenic 25.0%
!!! TAGATAATGGGAGAATAAAT+TGG + tig0026171:48597-48616 Msa1427210:intron 25.0%
! GAAAACATCTTATGACTTAT+AGG - tig0026171:48757-48776 None:intergenic 25.0%
!!! TTTTCTTAACTTCTTTGAAG+TGG - tig0026171:48785-48804 None:intergenic 25.0%
!! GGATTGACATAATTTTTGTT+AGG - tig0026171:48895-48914 None:intergenic 25.0%
!! AAGTAAATAAGCCTTATCTA+AGG - tig0026171:48925-48944 None:intergenic 25.0%
!!! TTTTGTTATGTTGATTATGC+AGG + tig0026171:49012-49031 Msa1427210:intron 25.0%
!! TTTGTTATGTTGATTATGCA+GGG + tig0026171:49013-49032 Msa1427210:intron 25.0%
! TTAGGACTAAGTTAAAGTAA+CGG - tig0026171:49085-49104 None:intergenic 25.0%
! ATTGTATAACTAATTAGCTG+CGG - tig0026171:49714-49733 None:intergenic 25.0%
! TTCCAATTTGAACTTTCATA+GGG - tig0026171:49798-49817 None:intergenic 25.0%
! TTTCCAATTTGAACTTTCAT+AGG - tig0026171:49799-49818 None:intergenic 25.0%
!!! TTTGCCTTTTTTGTGTGTTT+AGG + tig0026171:48036-48055 Msa1427210:intron 30.0%
TATGGAAACTTGTATAGTCA+AGG + tig0026171:48072-48091 Msa1427210:CDS 30.0%
AACTTGTATAGTCAAGGTTA+TGG + tig0026171:48078-48097 Msa1427210:CDS 30.0%
GAGCAAATAAGCAAAAATGT+AGG - tig0026171:48388-48407 None:intergenic 30.0%
AAACAAACACTTGATGTCAT+CGG - tig0026171:48437-48456 None:intergenic 30.0%
!! CAAGTGTTTGTTTGATTTTG+TGG + tig0026171:48444-48463 Msa1427210:intron 30.0%
TGTGATAGATCTCAATGATA+AGG + tig0026171:48545-48564 Msa1427210:intron 30.0%
ATAAATTGGTAAGACCATGT+TGG + tig0026171:48611-48630 Msa1427210:intron 30.0%
! TTGGCAATCAAATTCAGTTT+TGG + tig0026171:49199-49218 Msa1427210:CDS 30.0%
!! CAATCAAATTCAGTTTTGGT+GGG + tig0026171:49203-49222 Msa1427210:CDS 30.0%
TTTCGTGTTTGATTGATCAA+TGG + tig0026171:49332-49351 Msa1427210:exon 30.0%
! TTTTCCACCAATTGTGTTTT+TGG + tig0026171:49455-49474 Msa1427210:three_prime_UTR 30.0%
TCAAAAAGAACACCAATCTA+TGG - tig0026171:49493-49512 None:intergenic 30.0%
TATAGAAATGTGTGTCAAAG+TGG + tig0026171:49539-49558 Msa1427210:three_prime_UTR 30.0%
GTGTCAAAGTGGATAATTAA+AGG + tig0026171:49550-49569 Msa1427210:three_prime_UTR 30.0%
AAAGTGGATAATTAAAGGAG+TGG + tig0026171:49555-49574 Msa1427210:three_prime_UTR 30.0%
! GAAAGGATGAAAAAAAGTGT+AGG + tig0026171:49656-49675 Msa1427210:three_prime_UTR 30.0%
TTGTATAACTAATTAGCTGC+GGG - tig0026171:49713-49732 None:intergenic 30.0%
AACCCTATGAAAGTTCAAAT+TGG + tig0026171:49793-49812 Msa1427210:three_prime_UTR 30.0%
! TTCAATTTTACCCTTTGAGT+GGG + tig0026171:49844-49863 Msa1427210:three_prime_UTR 30.0%
AGCAGTATCATAATGTTTGT+TGG + tig0026171:49878-49897 Msa1427210:three_prime_UTR 30.0%
!!! TTTGCCTTTTTTGTGTGTTT+AGG + tig0026171:48036-48055 Msa1427210:intron 30.0%
TATGGAAACTTGTATAGTCA+AGG + tig0026171:48072-48091 Msa1427210:CDS 30.0%
AACTTGTATAGTCAAGGTTA+TGG + tig0026171:48078-48097 Msa1427210:CDS 30.0%
GAGCAAATAAGCAAAAATGT+AGG - tig0026171:48388-48407 None:intergenic 30.0%
AAACAAACACTTGATGTCAT+CGG - tig0026171:48437-48456 None:intergenic 30.0%
!! CAAGTGTTTGTTTGATTTTG+TGG + tig0026171:48444-48463 Msa1427210:intron 30.0%
TGTGATAGATCTCAATGATA+AGG + tig0026171:48545-48564 Msa1427210:intron 30.0%
ATAAATTGGTAAGACCATGT+TGG + tig0026171:48611-48630 Msa1427210:intron 30.0%
! TTGGCAATCAAATTCAGTTT+TGG + tig0026171:49199-49218 Msa1427210:CDS 30.0%
!! CAATCAAATTCAGTTTTGGT+GGG + tig0026171:49203-49222 Msa1427210:CDS 30.0%
TTTCGTGTTTGATTGATCAA+TGG + tig0026171:49332-49351 Msa1427210:exon 30.0%
! TTTTCCACCAATTGTGTTTT+TGG + tig0026171:49455-49474 Msa1427210:three_prime_UTR 30.0%
TCAAAAAGAACACCAATCTA+TGG - tig0026171:49493-49512 None:intergenic 30.0%
TATAGAAATGTGTGTCAAAG+TGG + tig0026171:49539-49558 Msa1427210:three_prime_UTR 30.0%
GTGTCAAAGTGGATAATTAA+AGG + tig0026171:49550-49569 Msa1427210:three_prime_UTR 30.0%
AAAGTGGATAATTAAAGGAG+TGG + tig0026171:49555-49574 Msa1427210:three_prime_UTR 30.0%
! GAAAGGATGAAAAAAAGTGT+AGG + tig0026171:49656-49675 Msa1427210:three_prime_UTR 30.0%
TTGTATAACTAATTAGCTGC+GGG - tig0026171:49713-49732 None:intergenic 30.0%
AACCCTATGAAAGTTCAAAT+TGG + tig0026171:49793-49812 Msa1427210:three_prime_UTR 30.0%
! TTCAATTTTACCCTTTGAGT+GGG + tig0026171:49844-49863 Msa1427210:three_prime_UTR 30.0%
AGCAGTATCATAATGTTTGT+TGG + tig0026171:49878-49897 Msa1427210:three_prime_UTR 30.0%
GAACAGAGAGAAAGAGATAT+GGG - tig0026171:47657-47676 None:intergenic 35.0%
ATAGAGAAAAAGCAGAGGTA+TGG - tig0026171:47679-47698 None:intergenic 35.0%
TATGTCACTAACAATGTGGA+TGG + tig0026171:47798-47817 Msa1427210:CDS 35.0%
TCCTCCTAAACACACAAAAA+AGG - tig0026171:48043-48062 None:intergenic 35.0%
!! TTCAACAATGGACTAAGTTG+TGG + tig0026171:48132-48151 Msa1427210:CDS 35.0%
TTGCTGTGATGAAAATGGAA+GGG - tig0026171:48212-48231 None:intergenic 35.0%
GTTAGTTGCTGTGATGAAAA+TGG - tig0026171:48217-48236 None:intergenic 35.0%
! TCACTAGGTTGAGCAAAATT+AGG - tig0026171:48249-48268 None:intergenic 35.0%
!! GATTTTAAGGAACATAGGCA+TGG - tig0026171:48316-48335 None:intergenic 35.0%
!! TCAGCGATTTTAAGGAACAT+AGG - tig0026171:48321-48340 None:intergenic 35.0%
CAAAAATGTAGGGTACAAAC+CGG - tig0026171:48377-48396 None:intergenic 35.0%
ATCCAAACATGCCTTAGATA+AGG + tig0026171:48911-48930 Msa1427210:intron 35.0%
GGGATTAGGTTCACAATAAA+CGG + tig0026171:49056-49075 Msa1427210:CDS 35.0%
TATAGTGAGGACCTATGTTA+AGG + tig0026171:49130-49149 Msa1427210:CDS 35.0%
ATAGTGAGGACCTATGTTAA+GGG + tig0026171:49131-49150 Msa1427210:CDS 35.0%
!!! TGTTTTAGTGCCCTTAACAT+AGG - tig0026171:49144-49163 None:intergenic 35.0%
!! TATGTTAAGGGCACTAAAAC+AGG + tig0026171:49143-49162 Msa1427210:CDS 35.0%
!! ATGTTAAGGGCACTAAAACA+GGG + tig0026171:49144-49163 Msa1427210:CDS 35.0%
!! GCAATCAAATTCAGTTTTGG+TGG + tig0026171:49202-49221 Msa1427210:CDS 35.0%
TGACCAAATTGCCAATTATG+TGG - tig0026171:49293-49312 None:intergenic 35.0%
CAATTTGGTCAAACTTTCAC+TGG + tig0026171:49302-49321 Msa1427210:CDS 35.0%
!! GATTGGTGTTCTTTTTGACT+AGG + tig0026171:49495-49514 Msa1427210:three_prime_UTR 35.0%
AATGGAAAAGATTAGGGTAG+AGG + tig0026171:49624-49643 Msa1427210:three_prime_UTR 35.0%
ATTAGGGTAGAGGAGTTATT+TGG + tig0026171:49634-49653 Msa1427210:three_prime_UTR 35.0%
AAGTGTAGGAAATGTTGAAG+TGG + tig0026171:49670-49689 Msa1427210:three_prime_UTR 35.0%
ATTGCTCTATGTATCCATTG+AGG + tig0026171:49757-49776 Msa1427210:three_prime_UTR 35.0%
! CTTCAATTTTACCCTTTGAG+TGG + tig0026171:49843-49862 Msa1427210:three_prime_UTR 35.0%
! TCAATTTTACCCTTTGAGTG+GGG + tig0026171:49845-49864 Msa1427210:three_prime_UTR 35.0%
! TGTTTGTTGGAAGAAATGCA+AGG + tig0026171:49891-49910 Msa1427210:three_prime_UTR 35.0%
GAACAGAGAGAAAGAGATAT+GGG - tig0026171:47657-47676 None:intergenic 35.0%
ATAGAGAAAAAGCAGAGGTA+TGG - tig0026171:47679-47698 None:intergenic 35.0%
TATGTCACTAACAATGTGGA+TGG + tig0026171:47798-47817 Msa1427210:CDS 35.0%
TCCTCCTAAACACACAAAAA+AGG - tig0026171:48043-48062 None:intergenic 35.0%
!! TTCAACAATGGACTAAGTTG+TGG + tig0026171:48132-48151 Msa1427210:CDS 35.0%
TTGCTGTGATGAAAATGGAA+GGG - tig0026171:48212-48231 None:intergenic 35.0%
GTTAGTTGCTGTGATGAAAA+TGG - tig0026171:48217-48236 None:intergenic 35.0%
! TCACTAGGTTGAGCAAAATT+AGG - tig0026171:48249-48268 None:intergenic 35.0%
!! GATTTTAAGGAACATAGGCA+TGG - tig0026171:48316-48335 None:intergenic 35.0%
!! TCAGCGATTTTAAGGAACAT+AGG - tig0026171:48321-48340 None:intergenic 35.0%
CAAAAATGTAGGGTACAAAC+CGG - tig0026171:48377-48396 None:intergenic 35.0%
ATCCAAACATGCCTTAGATA+AGG + tig0026171:48911-48930 Msa1427210:intron 35.0%
GGGATTAGGTTCACAATAAA+CGG + tig0026171:49056-49075 Msa1427210:CDS 35.0%
TATAGTGAGGACCTATGTTA+AGG + tig0026171:49130-49149 Msa1427210:CDS 35.0%
ATAGTGAGGACCTATGTTAA+GGG + tig0026171:49131-49150 Msa1427210:CDS 35.0%
!!! TGTTTTAGTGCCCTTAACAT+AGG - tig0026171:49144-49163 None:intergenic 35.0%
!! TATGTTAAGGGCACTAAAAC+AGG + tig0026171:49143-49162 Msa1427210:CDS 35.0%
!! ATGTTAAGGGCACTAAAACA+GGG + tig0026171:49144-49163 Msa1427210:CDS 35.0%
!! GCAATCAAATTCAGTTTTGG+TGG + tig0026171:49202-49221 Msa1427210:CDS 35.0%
TGACCAAATTGCCAATTATG+TGG - tig0026171:49293-49312 None:intergenic 35.0%
CAATTTGGTCAAACTTTCAC+TGG + tig0026171:49302-49321 Msa1427210:CDS 35.0%
!! GATTGGTGTTCTTTTTGACT+AGG + tig0026171:49495-49514 Msa1427210:three_prime_UTR 35.0%
AATGGAAAAGATTAGGGTAG+AGG + tig0026171:49624-49643 Msa1427210:three_prime_UTR 35.0%
ATTAGGGTAGAGGAGTTATT+TGG + tig0026171:49634-49653 Msa1427210:three_prime_UTR 35.0%
AAGTGTAGGAAATGTTGAAG+TGG + tig0026171:49670-49689 Msa1427210:three_prime_UTR 35.0%
ATTGCTCTATGTATCCATTG+AGG + tig0026171:49757-49776 Msa1427210:three_prime_UTR 35.0%
! CTTCAATTTTACCCTTTGAG+TGG + tig0026171:49843-49862 Msa1427210:three_prime_UTR 35.0%
! TCAATTTTACCCTTTGAGTG+GGG + tig0026171:49845-49864 Msa1427210:three_prime_UTR 35.0%
! TGTTTGTTGGAAGAAATGCA+AGG + tig0026171:49891-49910 Msa1427210:three_prime_UTR 35.0%
GGAACAGAGAGAAAGAGATA+TGG - tig0026171:47658-47677 None:intergenic 40.0%
ATGGTAAATGCTAGAATCCC+AGG + tig0026171:47817-47836 Msa1427210:CDS 40.0%
AGAATCCCAGGTGTTTACAA+TGG + tig0026171:47829-47848 Msa1427210:CDS 40.0%
!!! ACAGCTCATGCCACTTTTTA+CGG + tig0026171:47865-47884 Msa1427210:CDS 40.0%
TTTAGTACTAGACGTACCCA+TGG - tig0026171:47911-47930 None:intergenic 40.0%
!!! GCCTTTTTTGTGTGTTTAGG+AGG + tig0026171:48039-48058 Msa1427210:intron 40.0%
AGCACAGCACTATTCAACAA+TGG + tig0026171:48120-48139 Msa1427210:CDS 40.0%
GTTGCTGTGATGAAAATGGA+AGG - tig0026171:48213-48232 None:intergenic 40.0%
! CTAGGTTGAGCAAAATTAGG+AGG - tig0026171:48246-48265 None:intergenic 40.0%
TTTGCTCAACCTAGTGACAA+TGG + tig0026171:48252-48271 Msa1427210:CDS 40.0%
! CGCGATATTCAGCGATTTTA+AGG - tig0026171:48329-48348 None:intergenic 40.0%
! AGCCTTATCTAAGGCATGTT+TGG - tig0026171:48916-48935 None:intergenic 40.0%
GGAACATTGCTCCACATAAT+TGG + tig0026171:49279-49298 Msa1427210:CDS 40.0%
GCTCCACATAATTGGCAATT+TGG + tig0026171:49287-49306 Msa1427210:CDS 40.0%
! CGCGCAATTTTACCATAGAT+TGG + tig0026171:49478-49497 Msa1427210:three_prime_UTR 40.0%
GGTAGAGGAGTTATTTGGAA+AGG + tig0026171:49639-49658 Msa1427210:three_prime_UTR 40.0%
TAGGAAATGTTGAAGTGGCT+AGG + tig0026171:49675-49694 Msa1427210:three_prime_UTR 40.0%
ATGTATCCATTGAGGTGTGT+TGG + tig0026171:49765-49784 Msa1427210:three_prime_UTR 40.0%
TAACAACCAACACACCTCAA+TGG - tig0026171:49774-49793 None:intergenic 40.0%
GGAACAGAGAGAAAGAGATA+TGG - tig0026171:47658-47677 None:intergenic 40.0%
ATGGTAAATGCTAGAATCCC+AGG + tig0026171:47817-47836 Msa1427210:CDS 40.0%
AGAATCCCAGGTGTTTACAA+TGG + tig0026171:47829-47848 Msa1427210:CDS 40.0%
!!! ACAGCTCATGCCACTTTTTA+CGG + tig0026171:47865-47884 Msa1427210:CDS 40.0%
TTTAGTACTAGACGTACCCA+TGG - tig0026171:47911-47930 None:intergenic 40.0%
!!! GCCTTTTTTGTGTGTTTAGG+AGG + tig0026171:48039-48058 Msa1427210:intron 40.0%
AGCACAGCACTATTCAACAA+TGG + tig0026171:48120-48139 Msa1427210:CDS 40.0%
GTTGCTGTGATGAAAATGGA+AGG - tig0026171:48213-48232 None:intergenic 40.0%
! CTAGGTTGAGCAAAATTAGG+AGG - tig0026171:48246-48265 None:intergenic 40.0%
TTTGCTCAACCTAGTGACAA+TGG + tig0026171:48252-48271 Msa1427210:CDS 40.0%
! CGCGATATTCAGCGATTTTA+AGG - tig0026171:48329-48348 None:intergenic 40.0%
! AGCCTTATCTAAGGCATGTT+TGG - tig0026171:48916-48935 None:intergenic 40.0%
GGAACATTGCTCCACATAAT+TGG + tig0026171:49279-49298 Msa1427210:CDS 40.0%
GCTCCACATAATTGGCAATT+TGG + tig0026171:49287-49306 Msa1427210:CDS 40.0%
! CGCGCAATTTTACCATAGAT+TGG + tig0026171:49478-49497 Msa1427210:three_prime_UTR 40.0%
GGTAGAGGAGTTATTTGGAA+AGG + tig0026171:49639-49658 Msa1427210:three_prime_UTR 40.0%
TAGGAAATGTTGAAGTGGCT+AGG + tig0026171:49675-49694 Msa1427210:three_prime_UTR 40.0%
ATGTATCCATTGAGGTGTGT+TGG + tig0026171:49765-49784 Msa1427210:three_prime_UTR 40.0%
TAACAACCAACACACCTCAA+TGG - tig0026171:49774-49793 None:intergenic 40.0%
CAGAGAGAAAGAGATATGGG+TGG - tig0026171:47654-47673 None:intergenic 45.0%
CAGAAATGGGTATGGGAGTA+TGG + tig0026171:47756-47775 Msa1427210:exon 45.0%
ATCCCAGGTGTTTACAATGG+TGG + tig0026171:47832-47851 Msa1427210:CDS 45.0%
CACCACCATTGTAAACACCT+GGG - tig0026171:47837-47856 None:intergenic 45.0%
! GTGTTTACAATGGTGGTGCA+TGG + tig0026171:47839-47858 Msa1427210:CDS 45.0%
ATCGGAACCTCCGTAAAAAG+TGG - tig0026171:47878-47897 None:intergenic 45.0%
! TTAGGAGGAGCATGTGGATA+TGG + tig0026171:48054-48073 Msa1427210:intron 45.0%
AGTGTGCAAATGACAAGCAG+TGG + tig0026171:48172-48191 Msa1427210:CDS 45.0%
AACCTAGTGACAATGGTGGT+TGG + tig0026171:48259-48278 Msa1427210:CDS 45.0%
AAAATCGCTGAATATCGCGC+CGG + tig0026171:48330-48349 Msa1427210:CDS 45.0%
!! TTAAGGGCACTAAAACAGGG+TGG + tig0026171:49147-49166 Msa1427210:CDS 45.0%
GATGCCAATGAGCAGAAACT+GGG + tig0026171:49169-49188 Msa1427210:CDS 45.0%
ATGCCAATGAGCAGAAACTG+GGG + tig0026171:49170-49189 Msa1427210:CDS 45.0%
GCTTTGTCCTTCAGAGTTAC+CGG + tig0026171:49230-49249 Msa1427210:CDS 45.0%
TGGAGCAATGTTCCAAGAAG+TGG - tig0026171:49273-49292 None:intergenic 45.0%
TCAATGGTTACTTGCCACGT+AGG + tig0026171:49348-49367 Msa1427210:three_prime_UTR 45.0%
TTGCGCGCCAAAAACACAAT+TGG - tig0026171:49465-49484 None:intergenic 45.0%
GTACTACATCCCCACTCAAA+GGG - tig0026171:49857-49876 None:intergenic 45.0%
TGTACTACATCCCCACTCAA+AGG - tig0026171:49858-49877 None:intergenic 45.0%
CAGAGAGAAAGAGATATGGG+TGG - tig0026171:47654-47673 None:intergenic 45.0%
CAGAAATGGGTATGGGAGTA+TGG + tig0026171:47756-47775 Msa1427210:exon 45.0%
ATCCCAGGTGTTTACAATGG+TGG + tig0026171:47832-47851 Msa1427210:CDS 45.0%
CACCACCATTGTAAACACCT+GGG - tig0026171:47837-47856 None:intergenic 45.0%
! GTGTTTACAATGGTGGTGCA+TGG + tig0026171:47839-47858 Msa1427210:CDS 45.0%
ATCGGAACCTCCGTAAAAAG+TGG - tig0026171:47878-47897 None:intergenic 45.0%
! TTAGGAGGAGCATGTGGATA+TGG + tig0026171:48054-48073 Msa1427210:intron 45.0%
AGTGTGCAAATGACAAGCAG+TGG + tig0026171:48172-48191 Msa1427210:CDS 45.0%
AACCTAGTGACAATGGTGGT+TGG + tig0026171:48259-48278 Msa1427210:CDS 45.0%
AAAATCGCTGAATATCGCGC+CGG + tig0026171:48330-48349 Msa1427210:CDS 45.0%
!! TTAAGGGCACTAAAACAGGG+TGG + tig0026171:49147-49166 Msa1427210:CDS 45.0%
GATGCCAATGAGCAGAAACT+GGG + tig0026171:49169-49188 Msa1427210:CDS 45.0%
ATGCCAATGAGCAGAAACTG+GGG + tig0026171:49170-49189 Msa1427210:CDS 45.0%
GCTTTGTCCTTCAGAGTTAC+CGG + tig0026171:49230-49249 Msa1427210:CDS 45.0%
TGGAGCAATGTTCCAAGAAG+TGG - tig0026171:49273-49292 None:intergenic 45.0%
TCAATGGTTACTTGCCACGT+AGG + tig0026171:49348-49367 Msa1427210:three_prime_UTR 45.0%
TTGCGCGCCAAAAACACAAT+TGG - tig0026171:49465-49484 None:intergenic 45.0%
GTACTACATCCCCACTCAAA+GGG - tig0026171:49857-49876 None:intergenic 45.0%
TGTACTACATCCCCACTCAA+AGG - tig0026171:49858-49877 None:intergenic 45.0%
AGAGATATGGGTGGAACGAG+TGG - tig0026171:47645-47664 None:intergenic 50.0%
GCACCACCATTGTAAACACC+TGG - tig0026171:47838-47857 None:intergenic 50.0%
!!! GCTCATGCCACTTTTTACGG+AGG + tig0026171:47868-47887 Msa1427210:CDS 50.0%
! GTGTGTTTAGGAGGAGCATG+TGG + tig0026171:48048-48067 Msa1427210:intron 50.0%
!! GACAAGCAGTGGTGTCATTC+TGG + tig0026171:48183-48202 Msa1427210:CDS 50.0%
GCTCAACCTAGTGACAATGG+TGG + tig0026171:48255-48274 Msa1427210:CDS 50.0%
CACCAACCACCATTGTCACT+AGG - tig0026171:48264-48283 None:intergenic 50.0%
GATCAAAGTGAGGACGAGGA+GGG - tig0026171:48290-48309 None:intergenic 50.0%
AGATCAAAGTGAGGACGAGG+AGG - tig0026171:48291-48310 None:intergenic 50.0%
GCAAGATCAAAGTGAGGACG+AGG - tig0026171:48294-48313 None:intergenic 50.0%
GGCATGGCAAGATCAAAGTG+AGG - tig0026171:48300-48319 None:intergenic 50.0%
! GATTATGCAGGGTGCCATGT+AGG + tig0026171:49024-49043 Msa1427210:intron 50.0%
GTCCTAATCAGCAACGTTGC+AGG + tig0026171:49098-49117 Msa1427210:CDS 50.0%
! CACCTGCAACGTTGCTGATT+AGG - tig0026171:49103-49122 None:intergenic 50.0%
GGATGCCAATGAGCAGAAAC+TGG + tig0026171:49168-49187 Msa1427210:CDS 50.0%
TGCCAATGAGCAGAAACTGG+GGG + tig0026171:49171-49190 Msa1427210:CDS 50.0%
GCAGAAACTGGGGGCAAAAT+TGG + tig0026171:49180-49199 Msa1427210:CDS 50.0%
GTCACTACCGGTAACTCTGA+AGG - tig0026171:49240-49259 None:intergenic 50.0%
! TCCAAGAAGTGGAAGTGCGA+CGG - tig0026171:49262-49281 None:intergenic 50.0%
TTACTTGCCACGTAGGTCAC+TGG + tig0026171:49355-49374 Msa1427210:three_prime_UTR 50.0%
ACTTTGACCAGTGACCTACG+TGG - tig0026171:49365-49384 None:intergenic 50.0%
CGCGCCAAAAACACAATTGG+TGG - tig0026171:49462-49481 None:intergenic 50.0%
AGAGATATGGGTGGAACGAG+TGG - tig0026171:47645-47664 None:intergenic 50.0%
GCACCACCATTGTAAACACC+TGG - tig0026171:47838-47857 None:intergenic 50.0%
!!! GCTCATGCCACTTTTTACGG+AGG + tig0026171:47868-47887 Msa1427210:CDS 50.0%
! GTGTGTTTAGGAGGAGCATG+TGG + tig0026171:48048-48067 Msa1427210:intron 50.0%
!! GACAAGCAGTGGTGTCATTC+TGG + tig0026171:48183-48202 Msa1427210:CDS 50.0%
GCTCAACCTAGTGACAATGG+TGG + tig0026171:48255-48274 Msa1427210:CDS 50.0%
CACCAACCACCATTGTCACT+AGG - tig0026171:48264-48283 None:intergenic 50.0%
GATCAAAGTGAGGACGAGGA+GGG - tig0026171:48290-48309 None:intergenic 50.0%
AGATCAAAGTGAGGACGAGG+AGG - tig0026171:48291-48310 None:intergenic 50.0%
GCAAGATCAAAGTGAGGACG+AGG - tig0026171:48294-48313 None:intergenic 50.0%
GGCATGGCAAGATCAAAGTG+AGG - tig0026171:48300-48319 None:intergenic 50.0%
! GATTATGCAGGGTGCCATGT+AGG + tig0026171:49024-49043 Msa1427210:intron 50.0%
GTCCTAATCAGCAACGTTGC+AGG + tig0026171:49098-49117 Msa1427210:CDS 50.0%
! CACCTGCAACGTTGCTGATT+AGG - tig0026171:49103-49122 None:intergenic 50.0%
GGATGCCAATGAGCAGAAAC+TGG + tig0026171:49168-49187 Msa1427210:CDS 50.0%
TGCCAATGAGCAGAAACTGG+GGG + tig0026171:49171-49190 Msa1427210:CDS 50.0%
GCAGAAACTGGGGGCAAAAT+TGG + tig0026171:49180-49199 Msa1427210:CDS 50.0%
GTCACTACCGGTAACTCTGA+AGG - tig0026171:49240-49259 None:intergenic 50.0%
! TCCAAGAAGTGGAAGTGCGA+CGG - tig0026171:49262-49281 None:intergenic 50.0%
TTACTTGCCACGTAGGTCAC+TGG + tig0026171:49355-49374 Msa1427210:three_prime_UTR 50.0%
ACTTTGACCAGTGACCTACG+TGG - tig0026171:49365-49384 None:intergenic 50.0%
CGCGCCAAAAACACAATTGG+TGG - tig0026171:49462-49481 None:intergenic 50.0%
TACGGAGGTTCCGATGCTTC+CGG + tig0026171:47883-47902 Msa1427210:CDS 55.0%
ACTAGACGTACCCATGGTGC+CGG - tig0026171:47905-47924 None:intergenic 55.0%
AAAGGCGACAGGGACGATTC+CGG - tig0026171:48352-48371 None:intergenic 55.0%
GTAGGGTACAAACCGGCGAA+AGG - tig0026171:48370-48389 None:intergenic 55.0%
! TGCCATGTAGGAAGCGTGGT+GGG + tig0026171:49036-49055 Msa1427210:CDS 55.0%
ATCCCACCACGCTTCCTACA+TGG - tig0026171:49041-49060 None:intergenic 55.0%
! GTAGGAAGCGTGGTGGGATT+AGG + tig0026171:49042-49061 Msa1427210:CDS 55.0%
ATCAGCAACGTTGCAGGTGC+AGG + tig0026171:49104-49123 Msa1427210:CDS 55.0%
TCAGCAACGTTGCAGGTGCA+GGG + tig0026171:49105-49124 Msa1427210:CDS 55.0%
CAGGTGCAGGGGATATAGTG+AGG + tig0026171:49117-49136 Msa1427210:CDS 55.0%
TGCCCCCAGTTTCTGCTCAT+TGG - tig0026171:49176-49195 None:intergenic 55.0%
ACCGTCGCACTTCCACTTCT+TGG + tig0026171:49258-49277 Msa1427210:CDS 55.0%
TACGGAGGTTCCGATGCTTC+CGG + tig0026171:47883-47902 Msa1427210:CDS 55.0%
ACTAGACGTACCCATGGTGC+CGG - tig0026171:47905-47924 None:intergenic 55.0%
AAAGGCGACAGGGACGATTC+CGG - tig0026171:48352-48371 None:intergenic 55.0%
GTAGGGTACAAACCGGCGAA+AGG - tig0026171:48370-48389 None:intergenic 55.0%
! TGCCATGTAGGAAGCGTGGT+GGG + tig0026171:49036-49055 Msa1427210:CDS 55.0%
ATCCCACCACGCTTCCTACA+TGG - tig0026171:49041-49060 None:intergenic 55.0%
! GTAGGAAGCGTGGTGGGATT+AGG + tig0026171:49042-49061 Msa1427210:CDS 55.0%
ATCAGCAACGTTGCAGGTGC+AGG + tig0026171:49104-49123 Msa1427210:CDS 55.0%
TCAGCAACGTTGCAGGTGCA+GGG + tig0026171:49105-49124 Msa1427210:CDS 55.0%
CAGGTGCAGGGGATATAGTG+AGG + tig0026171:49117-49136 Msa1427210:CDS 55.0%
TGCCCCCAGTTTCTGCTCAT+TGG - tig0026171:49176-49195 None:intergenic 55.0%
ACCGTCGCACTTCCACTTCT+TGG + tig0026171:49258-49277 Msa1427210:CDS 55.0%
TTCCGATGCTTCCGGCACCA+TGG + tig0026171:47891-47910 Msa1427210:CDS 60.0%
TCCGATGCTTCCGGCACCAT+GGG + tig0026171:47892-47911 Msa1427210:CDS 60.0%
! ACCCATGGTGCCGGAAGCAT+CGG - tig0026171:47896-47915 None:intergenic 60.0%
CAAACCGGCGAAAGGCGACA+GGG - tig0026171:48362-48381 None:intergenic 60.0%
ACAAACCGGCGAAAGGCGAC+AGG - tig0026171:48363-48382 None:intergenic 60.0%
! AGGGTGCCATGTAGGAAGCG+TGG + tig0026171:49032-49051 Msa1427210:intron 60.0%
! GTGCCATGTAGGAAGCGTGG+TGG + tig0026171:49035-49054 Msa1427210:CDS 60.0%
CAGCAACGTTGCAGGTGCAG+GGG + tig0026171:49106-49125 Msa1427210:CDS 60.0%
! GGAAGTGCGACGGTCACTAC+CGG - tig0026171:49252-49271 None:intergenic 60.0%
TTCCGATGCTTCCGGCACCA+TGG + tig0026171:47891-47910 Msa1427210:CDS 60.0%
TCCGATGCTTCCGGCACCAT+GGG + tig0026171:47892-47911 Msa1427210:CDS 60.0%
! ACCCATGGTGCCGGAAGCAT+CGG - tig0026171:47896-47915 None:intergenic 60.0%
CAAACCGGCGAAAGGCGACA+GGG - tig0026171:48362-48381 None:intergenic 60.0%
ACAAACCGGCGAAAGGCGAC+AGG - tig0026171:48363-48382 None:intergenic 60.0%
! AGGGTGCCATGTAGGAAGCG+TGG + tig0026171:49032-49051 Msa1427210:intron 60.0%
! GTGCCATGTAGGAAGCGTGG+TGG + tig0026171:49035-49054 Msa1427210:CDS 60.0%
CAGCAACGTTGCAGGTGCAG+GGG + tig0026171:49106-49125 Msa1427210:CDS 60.0%
! GGAAGTGCGACGGTCACTAC+CGG - tig0026171:49252-49271 None:intergenic 60.0%
TCGTCCCTGTCGCCTTTCGC+CGG + tig0026171:48355-48374 Msa1427210:CDS 65.0%
TCGTCCCTGTCGCCTTTCGC+CGG + tig0026171:48355-48374 Msa1427210:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0026171 gene 47632 49918 47632 ID=Msa1427210;Name=Msa1427210
tig0026171 mRNA 47632 49918 47632 ID=Msa1427210-mRNA-1;Parent=Msa1427210;Name=Msa1427210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=143|1|1|1|1|1|3|575|255
tig0026171 exon 47632 47913 47632 ID=Msa1427210-mRNA-1:exon:5290;Parent=Msa1427210-mRNA-1
tig0026171 exon 48058 48376 48058 ID=Msa1427210-mRNA-1:exon:5291;Parent=Msa1427210-mRNA-1
tig0026171 exon 49034 49918 49034 ID=Msa1427210-mRNA-1:exon:5292;Parent=Msa1427210-mRNA-1
tig0026171 five_prime_UTR 47632 47774 47632 ID=Msa1427210-mRNA-1:five_prime_utr;Parent=Msa1427210-mRNA-1
tig0026171 CDS 47775 47913 47775 ID=Msa1427210-mRNA-1:cds;Parent=Msa1427210-mRNA-1
tig0026171 CDS 48058 48376 48058 ID=Msa1427210-mRNA-1:cds;Parent=Msa1427210-mRNA-1
tig0026171 CDS 49034 49343 49034 ID=Msa1427210-mRNA-1:cds;Parent=Msa1427210-mRNA-1
tig0026171 three_prime_UTR 49344 49918 49344 ID=Msa1427210-mRNA-1:three_prime_utr;Parent=Msa1427210-mRNA-1
Gene Sequence

>Msa1427210

ATGGTTTACATTGTGACTCTTATTATGTCACTAACAATGTGGATGGTAAATGCTAGAATCCCAGGTGTTTACAATGGTGGTGCATGGCAAACAGCTCATGCCACTTTTTACGGAGGTTCCGATGCTTCCGGCACCATGGGAGGAGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGAGTTAACACAGCAGCATTAAGCACAGCACTATTCAACAATGGACTAAGTTGTGGTTCTTGTTTTGAATTGAAGTGTGCAAATGACAAGCAGTGGTGTCATTCTGGTAGCCCTTCCATTTTCATCACAGCAACTAACTTTTGTCCTCCTAATTTTGCTCAACCTAGTGACAATGGTGGTTGGTGTAACCCTCCTCGTCCTCACTTTGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAATATCGCGCCGGAATCGTCCCTGTCGCCTTTCGCCGGGTGCCATGTAGGAAGCGTGGTGGGATTAGGTTCACAATAAACGGATTCCGTTACTTTAACTTAGTCCTAATCAGCAACGTTGCAGGTGCAGGGGATATAGTGAGGACCTATGTTAAGGGCACTAAAACAGGGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCAAATTCAGTTTTGGTGGGTCAAGCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCTCCACATAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTTCGTGTTTGA
Protein sequence

>Msa1427210

MVYIVTLIMSLTMWMVNARIPGVYNGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCANDKQWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTKTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNIAPHNWQFGQTFTGKNFRV*