Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034280 | sp|F4I839|PAE2_ARATH | 60.000 | 325 | 107 | 3 | 2 | 318 | 27 | 336 | 1.19e-138 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019640 | Msa0034280 | 0.809874 | 1.525246e-50 | -8.615850e-47 |
| Msa0019650 | Msa0034280 | 0.829910 | 3.950686e-55 | -8.615850e-47 |
| Msa0034280 | Msa0050750 | 0.807580 | 4.715404e-50 | -8.615850e-47 |
| Msa0034280 | Msa0066160 | 0.807040 | 6.138169e-50 | -8.615850e-47 |
| Msa0034280 | Msa0081350 | 0.837443 | 5.182080e-57 | -8.615850e-47 |
| Msa0034280 | Msa0173650 | 0.836858 | 7.315760e-57 | -8.615850e-47 |
| Msa0034280 | Msa0210930 | 0.830547 | 2.761439e-55 | -8.615850e-47 |
| Msa0034280 | Msa0222990 | 0.825491 | 4.554192e-54 | -8.615850e-47 |
| Msa0034280 | Msa0302380 | 0.812972 | 3.239841e-51 | -8.615850e-47 |
| Msa0034280 | Msa0622280 | 0.816784 | 4.625197e-52 | -8.615850e-47 |
| Msa0034280 | Msa0748290 | 0.800568 | 1.356229e-48 | -8.615850e-47 |
| Msa0034280 | Msa1173330 | 0.822025 | 2.953784e-53 | -8.615850e-47 |
| Msa0034280 | Msa1232710 | 0.809865 | 1.531923e-50 | -8.615850e-47 |
| Msa0034280 | Msa1253310 | 0.813559 | 2.407077e-51 | -8.615850e-47 |
| Msa0034280 | Msa1307570 | 0.822239 | 2.634715e-53 | -8.615850e-47 |
| Msa0034280 | Msa1313300 | 0.814757 | 1.309141e-51 | -8.615850e-47 |
| Msa0034280 | Msa1427210 | 0.817291 | 3.559445e-52 | -8.615850e-47 |
| Msa0034280 | Msa1440590 | 0.815273 | 1.005987e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034280 | MtrunA17_Chr1g0193761 | 89.375 | 320 | 12 | 4 | 1 | 320 | 1 | 298 | 0.0 | 568 |
| Msa0034280 | MtrunA17_Chr7g0270931 | 67.913 | 321 | 84 | 3 | 2 | 318 | 3 | 308 | 1.93e-156 | 447 |
| Msa0034280 | MtrunA17_Chr1g0193381 | 63.729 | 295 | 92 | 2 | 26 | 318 | 28 | 309 | 1.11e-139 | 403 |
| Msa0034280 | MtrunA17_Chr7g0271231 | 68.248 | 274 | 74 | 1 | 45 | 318 | 52 | 312 | 5.53e-139 | 401 |
| Msa0034280 | MtrunA17_Chr4g0069571 | 58.769 | 325 | 106 | 5 | 1 | 317 | 9 | 313 | 3.00e-134 | 389 |
| Msa0034280 | MtrunA17_Chr5g0408881 | 52.941 | 272 | 113 | 2 | 49 | 318 | 29 | 287 | 2.20e-103 | 311 |
| Msa0034280 | MtrunA17_Chr7g0238491 | 41.527 | 419 | 161 | 9 | 15 | 367 | 28 | 428 | 1.75e-100 | 303 |
| Msa0034280 | MtrunA17_Chr8g0369651 | 40.106 | 379 | 152 | 6 | 49 | 365 | 28 | 393 | 1.45e-98 | 298 |
| Msa0034280 | MtrunA17_Chr5g0418101 | 41.444 | 374 | 148 | 6 | 48 | 363 | 41 | 401 | 1.45e-95 | 290 |
| Msa0034280 | MtrunA17_Chr8g0369681 | 46.575 | 292 | 137 | 3 | 45 | 334 | 23 | 297 | 1.87e-94 | 287 |
| Msa0034280 | MtrunA17_Chr1g0203101 | 51.095 | 274 | 117 | 3 | 49 | 318 | 39 | 299 | 2.82e-93 | 285 |
| Msa0034280 | MtrunA17_Chr1g0203121 | 50.730 | 274 | 118 | 3 | 49 | 318 | 39 | 299 | 1.30e-92 | 283 |
| Msa0034280 | MtrunA17_Chr1g0163701 | 53.947 | 76 | 35 | 0 | 242 | 317 | 270 | 345 | 1.64e-21 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034280 | AT1G57590.1 | 60.000 | 325 | 107 | 3 | 2 | 318 | 27 | 336 | 1.21e-139 | 404 |
| Msa0034280 | AT3G62060.1 | 60.061 | 328 | 102 | 5 | 3 | 318 | 1 | 311 | 1.20e-136 | 396 |
| Msa0034280 | AT3G62060.2 | 60.061 | 328 | 102 | 5 | 3 | 318 | 1 | 311 | 1.31e-136 | 397 |
| Msa0034280 | AT5G26670.1 | 59.568 | 324 | 101 | 3 | 7 | 318 | 4 | 309 | 2.79e-134 | 390 |
| Msa0034280 | AT3G05910.1 | 65.343 | 277 | 82 | 2 | 42 | 318 | 46 | 308 | 3.82e-134 | 389 |
| Msa0034280 | AT2G46930.1 | 59.938 | 322 | 108 | 4 | 3 | 317 | 1 | 308 | 1.34e-130 | 380 |
| Msa0034280 | AT3G05910.2 | 64.234 | 274 | 84 | 2 | 43 | 316 | 47 | 306 | 1.61e-130 | 376 |
| Msa0034280 | AT4G19420.1 | 46.032 | 378 | 129 | 6 | 49 | 364 | 25 | 389 | 3.32e-110 | 328 |
| Msa0034280 | AT4G19420.2 | 46.032 | 378 | 129 | 6 | 49 | 364 | 25 | 389 | 3.32e-110 | 328 |
| Msa0034280 | AT1G09550.1 | 52.962 | 287 | 118 | 3 | 31 | 317 | 28 | 297 | 4.19e-110 | 327 |
| Msa0034280 | AT4G19420.4 | 55.882 | 272 | 105 | 2 | 49 | 318 | 25 | 283 | 1.42e-107 | 322 |
| Msa0034280 | AT5G23870.1 | 43.570 | 381 | 136 | 7 | 49 | 363 | 35 | 402 | 2.19e-104 | 313 |
| Msa0034280 | AT5G23870.4 | 43.570 | 381 | 136 | 7 | 49 | 363 | 35 | 402 | 2.19e-104 | 313 |
| Msa0034280 | AT5G23870.2 | 43.570 | 381 | 136 | 7 | 49 | 363 | 35 | 402 | 2.40e-104 | 314 |
| Msa0034280 | AT5G23870.3 | 43.570 | 381 | 136 | 7 | 49 | 363 | 35 | 402 | 2.89e-104 | 314 |
| Msa0034280 | AT3G09410.1 | 41.262 | 412 | 162 | 7 | 16 | 364 | 32 | 426 | 1.11e-102 | 310 |
| Msa0034280 | AT3G09410.3 | 48.125 | 320 | 143 | 4 | 16 | 329 | 32 | 334 | 1.64e-101 | 305 |
| Msa0034280 | AT4G19410.1 | 47.569 | 288 | 132 | 3 | 49 | 334 | 24 | 294 | 1.77e-97 | 295 |
| Msa0034280 | AT5G45280.1 | 46.801 | 297 | 139 | 4 | 49 | 339 | 24 | 307 | 1.00e-96 | 292 |
| Msa0034280 | AT4G19410.2 | 47.569 | 288 | 132 | 3 | 49 | 334 | 24 | 294 | 2.85e-96 | 296 |
| Msa0034280 | AT5G45280.2 | 46.875 | 288 | 134 | 3 | 49 | 334 | 24 | 294 | 4.94e-96 | 291 |
| Msa0034280 | AT3G09405.1 | 46.918 | 292 | 138 | 3 | 29 | 317 | 32 | 309 | 6.57e-93 | 284 |
| Msa0034280 | AT5G26670.3 | 61.275 | 204 | 66 | 1 | 115 | 318 | 1 | 191 | 7.07e-89 | 270 |
| Msa0034280 | AT5G26670.2 | 61.275 | 204 | 66 | 1 | 115 | 318 | 1 | 191 | 7.07e-89 | 270 |
| Msa0034280 | AT5G26670.4 | 61.275 | 204 | 66 | 1 | 115 | 318 | 1 | 191 | 7.07e-89 | 270 |
| Msa0034280 | AT4G19420.3 | 55.172 | 232 | 89 | 2 | 49 | 278 | 25 | 243 | 6.32e-88 | 268 |
| Msa0034280 | AT3G09405.2 | 47.196 | 214 | 97 | 2 | 107 | 317 | 2 | 202 | 1.29e-66 | 213 |
Find 92 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGCATTCTTAGTTTC+TGG | 0.113356 | 1_1:-62220146 | Msa0034280:CDS |
| TTCTTTATCCTACATAATTT+TGG | 0.155392 | 1_1:-62218966 | Msa0034280:CDS |
| ACTTCCCTCCTTGTATTGTT+TGG | 0.256099 | 1_1:-62216631 | Msa0034280:three_prime_UTR |
| GAACTCATCACAGTGTATTA+TGG | 0.279288 | 1_1:+62218345 | None:intergenic |
| CATGCACAGATTTCTTTAAC+TGG | 0.280335 | 1_1:-62218835 | Msa0034280:intron |
| AATTTGCATTCTTAGTTTCT+GGG | 0.281723 | 1_1:-62220145 | Msa0034280:CDS |
| CTTCCCTCCTTGTATTGTTT+GGG | 0.288558 | 1_1:-62216630 | Msa0034280:three_prime_UTR |
| AGCTGTCTTTGGGGCTAAAC+TGG | 0.296500 | 1_1:+62217448 | None:intergenic |
| ACTGGAATAGAGTCAAATTA+AGG | 0.300173 | 1_1:-62218817 | Msa0034280:CDS |
| GAAAATACCTGGGTTTCTTC+TGG | 0.303869 | 1_1:+62218986 | None:intergenic |
| TGGAGGTGTAGTTCAGTTAC+AGG | 0.319230 | 1_1:-62218129 | Msa0034280:intron |
| GTTTCTGGGTTTATCTCCTC+TGG | 0.329452 | 1_1:-62220131 | Msa0034280:CDS |
| TCTTATCACCACAGTCTGTT+TGG | 0.333070 | 1_1:-62219372 | Msa0034280:intron |
| ATATGAGGTTGCAATGAATT+AGG | 0.345810 | 1_1:+62220062 | None:intergenic |
| AACATTGCCTGGTTACCATT+TGG | 0.363625 | 1_1:-62219345 | Msa0034280:CDS |
| GAGAGAGATACCAGCTCCTT+TGG | 0.363704 | 1_1:+62220007 | None:intergenic |
| CTCTTCTAAACACCAGATTA+TGG | 0.376863 | 1_1:+62216691 | None:intergenic |
| GTATATCAGGCCCTTCTCTC+TGG | 0.378444 | 1_1:-62218391 | Msa0034280:intron |
| TTCTGCATTGAATAGCAAAA+TGG | 0.379784 | 1_1:-62216491 | Msa0034280:three_prime_UTR |
| CTTCTCTCTGGATGCTCTGC+GGG | 0.380263 | 1_1:-62218379 | Msa0034280:CDS |
| CTATTGTGGTGGAAACAAAA+AGG | 0.388388 | 1_1:+62220327 | None:intergenic |
| TTGTGTAGAATTGATATATC+TGG | 0.393324 | 1_1:-62218176 | Msa0034280:intron |
| TTGGATCGTGGATTTGAATC+TGG | 0.394258 | 1_1:-62219326 | Msa0034280:CDS |
| TGAATGAGAATTACCGAAGT+TGG | 0.402427 | 1_1:+62217768 | None:intergenic |
| TAATTCATTGCAACCTCATA+TGG | 0.405524 | 1_1:-62220060 | Msa0034280:CDS |
| TTGCTCAATATTCCTGTGAA+TGG | 0.409923 | 1_1:+62219013 | None:intergenic |
| TGACAATAGCTGCCATAATC+TGG | 0.419500 | 1_1:-62216703 | Msa0034280:CDS |
| TCTCCAACAGCAACTGCAAT+TGG | 0.422862 | 1_1:+62216775 | None:intergenic |
| CGCACAATGAGGAATATGTT+TGG | 0.429123 | 1_1:-62218149 | Msa0034280:CDS |
| GTGAAGTGTTTAAGTGATGC+AGG | 0.433309 | 1_1:-62218295 | Msa0034280:CDS |
| TTGAATCTGGTGCAAATAGT+TGG | 0.437940 | 1_1:-62219313 | Msa0034280:CDS |
| TCAATAGCTTGACAACTTCT+CGG | 0.444182 | 1_1:+62216741 | None:intergenic |
| TCTTTGGGGCTAAACTGGCT+TGG | 0.447959 | 1_1:+62217453 | None:intergenic |
| AAATAGTTGGCTTATTCATC+TGG | 0.452603 | 1_1:-62219300 | Msa0034280:CDS |
| AATATGGCTTGCTGCAATAG+AGG | 0.452909 | 1_1:-62218514 | Msa0034280:CDS |
| CAGCTATTGTCACAGGGGTA+AGG | 0.457583 | 1_1:+62216714 | None:intergenic |
| AGGAATGCAGAATGCCGAAC+AGG | 0.466856 | 1_1:-62218478 | Msa0034280:intron |
| GTAGACCTCACTCTCATTCA+AGG | 0.469696 | 1_1:-62220038 | Msa0034280:CDS |
| GAATGAGAATTACCGAAGTT+GGG | 0.474842 | 1_1:+62217769 | None:intergenic |
| ATCACCACAGTCTGTTTGGA+TGG | 0.477109 | 1_1:-62219368 | Msa0034280:intron |
| GCTGAAGGGCTTCAATTTCG+TGG | 0.477342 | 1_1:-62218543 | Msa0034280:CDS |
| TGTTTGGATGGAACATTGCC+TGG | 0.481213 | 1_1:-62219356 | Msa0034280:CDS |
| TTTGCAGTATTCCAAGAGCC+AGG | 0.483381 | 1_1:+62217420 | None:intergenic |
| CAGCCAATTGCAGTTGCTGT+TGG | 0.488140 | 1_1:-62216778 | Msa0034280:CDS |
| CGCAGAGCATCCAGAGAGAA+GGG | 0.499707 | 1_1:+62218381 | None:intergenic |
| CGCGGCTTATGACGTGTGGC+AGG | 0.504914 | 1_1:-62217612 | Msa0034280:intron |
| CCGCAGAGCATCCAGAGAGA+AGG | 0.509186 | 1_1:+62218380 | None:intergenic |
| CCTGGTTACCATTTGGATCG+TGG | 0.510305 | 1_1:-62219338 | Msa0034280:CDS |
| TTGCAGTTGCTGTTGGAGAC+TGG | 0.515469 | 1_1:-62216771 | Msa0034280:CDS |
| AGAAACATGGGAAACCTGTT+CGG | 0.515752 | 1_1:+62218464 | None:intergenic |
| TGTAGGATAAAGAAAATACC+TGG | 0.518989 | 1_1:+62218975 | None:intergenic |
| ATTATGGCAGCTATTGTCAC+AGG | 0.520288 | 1_1:+62216707 | None:intergenic |
| TATGAATTCCTGTAGGGAGG+AGG | 0.530218 | 1_1:-62219115 | Msa0034280:intron |
| TCGTGGTTCCTCAAAATACA+TGG | 0.531611 | 1_1:-62219047 | Msa0034280:CDS |
| AGCTATTGTCACAGGGGTAA+GGG | 0.533131 | 1_1:+62216715 | None:intergenic |
| ATTCAAATCCACGATCCAAA+TGG | 0.544072 | 1_1:+62219330 | None:intergenic |
| CCACGATCCAAATGGTAACC+AGG | 0.549111 | 1_1:+62219338 | None:intergenic |
| CTCTCTGGATGCTCTGCGGG+TGG | 0.556169 | 1_1:-62218376 | Msa0034280:CDS |
| GAAAGTCAAATACCATTCAC+AGG | 0.558058 | 1_1:-62219025 | Msa0034280:CDS |
| GGAGCTGATTCCAAAGGAGC+TGG | 0.563677 | 1_1:-62220017 | Msa0034280:intron |
| AAGTGTTGTGTCAGATCCAG+AGG | 0.564410 | 1_1:+62220115 | None:intergenic |
| AACAAATGCCAAAATTATGT+AGG | 0.566601 | 1_1:+62218958 | None:intergenic |
| AGAGTGAGGTCTACCATATG+AGG | 0.570471 | 1_1:+62220047 | None:intergenic |
| GTGCTTCTTTCCTCAGAATG+TGG | 0.572227 | 1_1:-62217669 | Msa0034280:CDS |
| AAATACACCCAAACAATACA+AGG | 0.574926 | 1_1:+62216623 | None:intergenic |
| ACATGTTCGACCACATTCTG+AGG | 0.577838 | 1_1:+62217659 | None:intergenic |
| CCTTCTCTCTGGATGCTCTG+CGG | 0.578584 | 1_1:-62218380 | Msa0034280:CDS |
| TTGCAGTATTCCAAGAGCCA+GGG | 0.578718 | 1_1:+62217421 | None:intergenic |
| TGCTGGAGACAGTGAAAATG+AGG | 0.579915 | 1_1:-62218774 | Msa0034280:intron |
| GTCAAATTAAGGTACTGTGA+TGG | 0.583686 | 1_1:-62218806 | Msa0034280:CDS |
| TTGATATACCAACACTCTAT+CGG | 0.587156 | 1_1:+62216531 | None:intergenic |
| CAACAAAATGGACCCAACTT+CGG | 0.599036 | 1_1:-62217781 | Msa0034280:intron |
| ATAGAGGAACTATTGTCTCA+AGG | 0.604252 | 1_1:-62218498 | Msa0034280:CDS |
| CAGCTCCTTGAATGAGAGTG+AGG | 0.609174 | 1_1:+62220033 | None:intergenic |
| TAGTTGGCTTATTCATCTGG+AGG | 0.619415 | 1_1:-62219297 | Msa0034280:intron |
| TGCTACTACTGATAATAGTG+AGG | 0.620028 | 1_1:+62220226 | None:intergenic |
| TGCAGTATTCCAAGAGCCAG+GGG | 0.625316 | 1_1:+62217422 | None:intergenic |
| ACAATGAGGAATATGTTTGG+AGG | 0.627712 | 1_1:-62218146 | Msa0034280:CDS |
| ATTCAAGGAGCTGATTCCAA+AGG | 0.636479 | 1_1:-62220023 | Msa0034280:CDS |
| TGTAGAATTGATATATCTGG+AGG | 0.641221 | 1_1:-62218173 | Msa0034280:intron |
| CAATAAACCAGAAGAAACCC+AGG | 0.642247 | 1_1:-62218993 | Msa0034280:CDS |
| AATTCCTGTAGGGAGGAGGA+TGG | 0.645908 | 1_1:-62219111 | Msa0034280:intron |
| GTAGGATAAAGAAAATACCT+GGG | 0.646639 | 1_1:+62218976 | None:intergenic |
| ACACCCAAACAATACAAGGA+GGG | 0.650848 | 1_1:+62216627 | None:intergenic |
| TCAACGCGGCTTATGACGTG+TGG | 0.674971 | 1_1:-62217616 | Msa0034280:CDS |
| TTATGGCAGCTATTGTCACA+GGG | 0.677243 | 1_1:+62216708 | None:intergenic |
| GCCGCGTTGAGTAGAAACAA+TGG | 0.677618 | 1_1:+62217629 | None:intergenic |
| TATCTGGAGGACGCACAATG+AGG | 0.686282 | 1_1:-62218160 | Msa0034280:CDS |
| TACACCCAAACAATACAAGG+AGG | 0.687730 | 1_1:+62216626 | None:intergenic |
| ACCATTGTTTCTACTCAACG+CGG | 0.729768 | 1_1:-62217630 | Msa0034280:CDS |
| GCAGTATTCCAAGAGCCAGG+GGG | 0.732762 | 1_1:+62217423 | None:intergenic |
| TATGGCAGCTATTGTCACAG+GGG | 0.750427 | 1_1:+62216709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTATTTTAAAGATT+AGG | + | chr1_1:62219200-62219219 | None:intergenic | 10.0% |
| !! | CTATAAAAAGATATAAACAA+GGG | + | chr1_1:62217144-62217163 | None:intergenic | 15.0% |
| !! | ACTATAAAAAGATATAAACA+AGG | + | chr1_1:62217145-62217164 | None:intergenic | 15.0% |
| !!! | ATATCTTTTTATAGTTACAA+TGG | - | chr1_1:62217150-62217169 | Msa0034280:intron | 15.0% |
| !! | TTTAATTAATATAATGCTGA+AGG | - | chr1_1:62217246-62217265 | Msa0034280:intron | 15.0% |
| !!! | AAAGTATTGTTATTAAACTT+TGG | + | chr1_1:62217671-62217690 | None:intergenic | 15.0% |
| !! | TATTTAGTATAATATAGCAT+TGG | - | chr1_1:62218849-62218868 | Msa0034280:intron | 15.0% |
| !! | TGATAAGAATTACAAATTTA+TGG | + | chr1_1:62218885-62218904 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATCAGATAAGAA+TGG | + | chr1_1:62220359-62220378 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTCAACTATTG+TGG | + | chr1_1:62216617-62216636 | None:intergenic | 20.0% |
| !!! | TTCTTGATTTGTTTTAAGTA+AGG | + | chr1_1:62216645-62216664 | None:intergenic | 20.0% |
| !! | ATTTCATACAATAACTCAAA+GGG | + | chr1_1:62217012-62217031 | None:intergenic | 20.0% |
| !!! | TTTACTCTTTTTAACACAAT+AGG | + | chr1_1:62217502-62217521 | None:intergenic | 20.0% |
| !! | GTTTAATAACAATACTTTCA+AGG | - | chr1_1:62217673-62217692 | Msa0034280:intron | 20.0% |
| !!! | TTCTTTATCCTACATAATTT+TGG | - | chr1_1:62217961-62217980 | Msa0034280:intron | 20.0% |
| !!! | TGTTTTAATTGTCATGAATT+TGG | - | chr1_1:62218053-62218072 | Msa0034280:intron | 20.0% |
| !!! | TAGGAATTTTATAGATAAGA+GGG | + | chr1_1:62218205-62218224 | None:intergenic | 20.0% |
| !!! | ATAGGAATTTTATAGATAAG+AGG | + | chr1_1:62218206-62218225 | None:intergenic | 20.0% |
| !!! | AAATCTTAAGGGATTTTAAT+AGG | + | chr1_1:62218224-62218243 | None:intergenic | 20.0% |
| !!! | AAAATCCCTTAAGATTTTTA+TGG | - | chr1_1:62218227-62218246 | Msa0034280:intron | 20.0% |
| !! | CTAATCAATATATGTATATC+AGG | - | chr1_1:62218523-62218542 | Msa0034280:CDS | 20.0% |
| !! | CTTTATCTTGTATTACATTA+AGG | - | chr1_1:62219371-62219390 | Msa0034280:intron | 20.0% |
| ! | AATTTGCATTCTTAGTTTCT+GGG | - | chr1_1:62216782-62216801 | Msa0034280:intron | 25.0% |
| ! | CATTTCATACAATAACTCAA+AGG | + | chr1_1:62217013-62217032 | None:intergenic | 25.0% |
| ! | AATTCACCAACTAAAGTAAT+GGG | + | chr1_1:62217053-62217072 | None:intergenic | 25.0% |
| ! | AAATTCACCAACTAAAGTAA+TGG | + | chr1_1:62217054-62217073 | None:intergenic | 25.0% |
| !! | AAAGAGAATCTAAAATGATG+AGG | + | chr1_1:62217095-62217114 | None:intergenic | 25.0% |
| ! | TAAAATGTAACCACATATGT+CGG | + | chr1_1:62217345-62217364 | None:intergenic | 25.0% |
| ! | GACTTTCTTCTAAATATAGT+AGG | + | chr1_1:62217720-62217739 | None:intergenic | 25.0% |
| ! | TATATTTAGAAGAAAGTCGA+TGG | - | chr1_1:62217722-62217741 | Msa0034280:intron | 25.0% |
| ! | AACAAATGCCAAAATTATGT+AGG | + | chr1_1:62217972-62217991 | None:intergenic | 25.0% |
| !! | AGGAATTTTATAGATAAGAG+GGG | + | chr1_1:62218204-62218223 | None:intergenic | 25.0% |
| ! | ATTCCAAATGATCAATCTTT+CGG | + | chr1_1:62218319-62218338 | None:intergenic | 25.0% |
| !! | AGTAATATGTGTGTGATTTT+TGG | - | chr1_1:62218348-62218367 | Msa0034280:CDS | 25.0% |
| ! | AATTTCGTGGACAAAAAATA+TGG | - | chr1_1:62218397-62218416 | Msa0034280:intron | 25.0% |
| ! | ACAACAACATAAAGAAACAT+GGG | + | chr1_1:62218478-62218497 | None:intergenic | 25.0% |
| ! | AACAACAACATAAAGAAACA+TGG | + | chr1_1:62218479-62218498 | None:intergenic | 25.0% |
| ! | ATATATAAGTGTCTAGTCAA+TGG | + | chr1_1:62218713-62218732 | None:intergenic | 25.0% |
| ! | TTGTGTAGAATTGATATATC+TGG | - | chr1_1:62218751-62218770 | Msa0034280:intron | 25.0% |
| !! | TGTTTTACGTCTTTGATAAA+AGG | - | chr1_1:62219041-62219060 | Msa0034280:CDS | 25.0% |
| ! | CTGATATCAAATATTTGCAA+AGG | + | chr1_1:62219076-62219095 | None:intergenic | 25.0% |
| !! | ATTTTGTTGAGACAACTTTT+TGG | + | chr1_1:62219135-62219154 | None:intergenic | 25.0% |
| ! | AAAAAGTTGTCTCAACAAAA+TGG | - | chr1_1:62219134-62219153 | Msa0034280:intron | 25.0% |
| !! | ACTATCGATTATTTCATCTA+AGG | + | chr1_1:62220067-62220086 | None:intergenic | 25.0% |
| !! | TTGTTTTTCAACTATTGTGG+TGG | + | chr1_1:62216614-62216633 | None:intergenic | 30.0% |
| GAATTTGCATTCTTAGTTTC+TGG | - | chr1_1:62216781-62216800 | Msa0034280:intron | 30.0% | |
| ATATGAGGTTGCAATGAATT+AGG | + | chr1_1:62216868-62216887 | None:intergenic | 30.0% | |
| TAATTCATTGCAACCTCATA+TGG | - | chr1_1:62216867-62216886 | Msa0034280:intron | 30.0% | |
| AGGGTATAATATTCTATGCA+AGG | + | chr1_1:62216993-62217012 | None:intergenic | 30.0% | |
| AACAAGCATAAGAATACTCT+GGG | + | chr1_1:62217449-62217468 | None:intergenic | 30.0% | |
| AAACAAGCATAAGAATACTC+TGG | + | chr1_1:62217450-62217469 | None:intergenic | 30.0% | |
| ! | AAATAGTTGGCTTATTCATC+TGG | - | chr1_1:62217627-62217646 | Msa0034280:CDS | 30.0% |
| CTCTTTCTTTAACTATGCTA+TGG | - | chr1_1:62217768-62217787 | Msa0034280:intron | 30.0% | |
| ACACTTTATGAATTCCTGTA+GGG | - | chr1_1:62217806-62217825 | Msa0034280:CDS | 30.0% | |
| ! | TTGACTTTCCATGTATTTTG+AGG | + | chr1_1:62217891-62217910 | None:intergenic | 30.0% |
| GTAGGATAAAGAAAATACCT+GGG | + | chr1_1:62217954-62217973 | None:intergenic | 30.0% | |
| TGTAGGATAAAGAAAATACC+TGG | + | chr1_1:62217955-62217974 | None:intergenic | 30.0% | |
| ACTGGAATAGAGTCAAATTA+AGG | - | chr1_1:62218110-62218129 | Msa0034280:intron | 30.0% | |
| ! | TCCCTTAAGATTTTTATGGA+AGG | - | chr1_1:62218231-62218250 | Msa0034280:intron | 30.0% |
| GCCTTCCATAAAAATCTTAA+GGG | + | chr1_1:62218235-62218254 | None:intergenic | 30.0% | |
| AGCCTTCCATAAAAATCTTA+AGG | + | chr1_1:62218236-62218255 | None:intergenic | 30.0% | |
| !!! | GATTTTTGGTTCTTTTATCC+AGG | - | chr1_1:62218362-62218381 | Msa0034280:CDS | 30.0% |
| TTGTTCAATCTTAATGTTCG+TGG | - | chr1_1:62218494-62218513 | Msa0034280:CDS | 30.0% | |
| !! | CACTTCACTTTTGAAGATTT+TGG | + | chr1_1:62218620-62218639 | None:intergenic | 30.0% |
| TGTAGAATTGATATATCTGG+AGG | - | chr1_1:62218754-62218773 | Msa0034280:intron | 30.0% | |
| ACTAATTCTCCTAAAAGCTT+AGG | - | chr1_1:62218977-62218996 | Msa0034280:CDS | 30.0% | |
| !! | TCAGTACTGTTTTGAATTGT+AGG | - | chr1_1:62219092-62219111 | Msa0034280:CDS | 30.0% |
| !! | AACTTTTTGGCAGATTTTTC+TGG | + | chr1_1:62219122-62219141 | None:intergenic | 30.0% |
| ! | TTATCTGAAGTCTGTTTCAA+AGG | + | chr1_1:62219718-62219737 | None:intergenic | 30.0% |
| ATAACCTTGTCATCAATAAG+AGG | + | chr1_1:62220019-62220038 | None:intergenic | 30.0% | |
| AGGATATTCTCTGATAACAA+TGG | + | chr1_1:62220119-62220138 | None:intergenic | 30.0% | |
| AAATACACCCAAACAATACA+AGG | + | chr1_1:62220307-62220326 | None:intergenic | 30.0% | |
| TTGATATACCAACACTCTAT+CGG | + | chr1_1:62220399-62220418 | None:intergenic | 30.0% | |
| AAAAAAGACAACACACGACA+AGG | - | chr1_1:62216528-62216547 | Msa0034280:three_prime_UTR | 35.0% | |
| AAAAAGACAACACACGACAA+GGG | - | chr1_1:62216529-62216548 | Msa0034280:three_prime_UTR | 35.0% | |
| ! | CTATTGTGGTGGAAACAAAA+AGG | + | chr1_1:62216603-62216622 | None:intergenic | 35.0% |
| TGCTACTACTGATAATAGTG+AGG | + | chr1_1:62216704-62216723 | None:intergenic | 35.0% | |
| ! | TGCAAGGTTCTAATACAAAG+AGG | + | chr1_1:62216977-62216996 | None:intergenic | 35.0% |
| !! | AATGGGTTAGCTTCAAAATG+TGG | + | chr1_1:62217036-62217055 | None:intergenic | 35.0% |
| AGCTAACCCATTACTTTAGT+TGG | - | chr1_1:62217044-62217063 | Msa0034280:intron | 35.0% | |
| TGCCTTATATTGTTGTGAAG+TGG | - | chr1_1:62217204-62217223 | Msa0034280:intron | 35.0% | |
| CTCCACTTCACAACAATATA+AGG | + | chr1_1:62217209-62217228 | None:intergenic | 35.0% | |
| CTTATATTGTTGTGAAGTGG+AGG | - | chr1_1:62217207-62217226 | Msa0034280:intron | 35.0% | |
| TGTGCATAACTCAAACTCTT+CGG | - | chr1_1:62217282-62217301 | Msa0034280:intron | 35.0% | |
| ATTCAAATCCACGATCCAAA+TGG | + | chr1_1:62217600-62217619 | None:intergenic | 35.0% | |
| TTGAATCTGGTGCAAATAGT+TGG | - | chr1_1:62217614-62217633 | Msa0034280:CDS | 35.0% | |
| GACACTTTATGAATTCCTGT+AGG | - | chr1_1:62217805-62217824 | Msa0034280:CDS | 35.0% | |
| TACAGAAAAAAGACTCATCG+TGG | - | chr1_1:62217863-62217882 | Msa0034280:intron | 35.0% | |
| GAAAGTCAAATACCATTCAC+AGG | - | chr1_1:62217902-62217921 | Msa0034280:intron | 35.0% | |
| TTGCTCAATATTCCTGTGAA+TGG | + | chr1_1:62217917-62217936 | None:intergenic | 35.0% | |
| ATAAGTTGCAGCATCAATGA+GGG | + | chr1_1:62218018-62218037 | None:intergenic | 35.0% | |
| AAAGAAATCTGTGCATGGAA+TGG | + | chr1_1:62218089-62218108 | None:intergenic | 35.0% | |
| CAGTTAAAGAAATCTGTGCA+TGG | + | chr1_1:62218094-62218113 | None:intergenic | 35.0% | |
| CATGCACAGATTTCTTTAAC+TGG | - | chr1_1:62218092-62218111 | Msa0034280:intron | 35.0% | |
| !! | GTCAAATTAAGGTACTGTGA+TGG | - | chr1_1:62218121-62218140 | Msa0034280:intron | 35.0% |
| AGCAATTAACTCAGCACTAA+AGG | + | chr1_1:62218295-62218314 | None:intergenic | 35.0% | |
| CTACCGAAAGATTGATCATT+TGG | - | chr1_1:62218313-62218332 | Msa0034280:CDS | 35.0% | |
| ATAGAGGAACTATTGTCTCA+AGG | - | chr1_1:62218429-62218448 | Msa0034280:intron | 35.0% | |
| GAACTCATCACAGTGTATTA+TGG | + | chr1_1:62218585-62218604 | None:intergenic | 35.0% | |
| !! | AAGATTTTGGTAACAAGCTC+TGG | + | chr1_1:62218607-62218626 | None:intergenic | 35.0% |
| ACAATGAGGAATATGTTTGG+AGG | - | chr1_1:62218781-62218800 | Msa0034280:CDS | 35.0% | |
| TTGAAGAACTGTGTGGTTAA+TGG | + | chr1_1:62218937-62218956 | None:intergenic | 35.0% | |
| ! | ACTTGACAACCTAAGCTTTT+AGG | + | chr1_1:62218989-62219008 | None:intergenic | 35.0% |
| GAATGAGAATTACCGAAGTT+GGG | + | chr1_1:62219161-62219180 | None:intergenic | 35.0% | |
| TGAATGAGAATTACCGAAGT+TGG | + | chr1_1:62219162-62219181 | None:intergenic | 35.0% | |
| TGCTTCGGATATTCAAAACT+TGG | + | chr1_1:62219227-62219246 | None:intergenic | 35.0% | |
| AGTAGAGATTGAAAACACCT+TGG | + | chr1_1:62219574-62219593 | None:intergenic | 35.0% | |
| CAATTGGCTGTATAACAAAC+AGG | + | chr1_1:62220139-62220158 | None:intergenic | 35.0% | |
| TCAATAGCTTGACAACTTCT+CGG | + | chr1_1:62220189-62220208 | None:intergenic | 35.0% | |
| CTCTTCTAAACACCAGATTA+TGG | + | chr1_1:62220239-62220258 | None:intergenic | 35.0% | |
| ! | CAATTTTACCGATAGAGTGT+TGG | - | chr1_1:62220388-62220407 | Msa0034280:five_prime_UTR | 35.0% |
| ! | ATTCAAGGAGCTGATTCCAA+AGG | - | chr1_1:62216904-62216923 | Msa0034280:intron | 40.0% |
| TCTTATCACCACAGTCTGTT+TGG | - | chr1_1:62217555-62217574 | Msa0034280:intron | 40.0% | |
| AACATTGCCTGGTTACCATT+TGG | - | chr1_1:62217582-62217601 | Msa0034280:intron | 40.0% | |
| TTGGATCGTGGATTTGAATC+TGG | - | chr1_1:62217601-62217620 | Msa0034280:intron | 40.0% | |
| ! | TAGTTGGCTTATTCATCTGG+AGG | - | chr1_1:62217630-62217649 | Msa0034280:CDS | 40.0% |
| CTTTATGAATTCCTGTAGGG+AGG | - | chr1_1:62217809-62217828 | Msa0034280:CDS | 40.0% | |
| TCGTGGTTCCTCAAAATACA+TGG | - | chr1_1:62217880-62217899 | Msa0034280:intron | 40.0% | |
| CAATAAACCAGAAGAAACCC+AGG | - | chr1_1:62217934-62217953 | Msa0034280:intron | 40.0% | |
| GAAAATACCTGGGTTTCTTC+TGG | + | chr1_1:62217944-62217963 | None:intergenic | 40.0% | |
| CATAAGTTGCAGCATCAATG+AGG | + | chr1_1:62218019-62218038 | None:intergenic | 40.0% | |
| ! | GTTCTTTTATCCAGGCTGAA+GGG | - | chr1_1:62218370-62218389 | Msa0034280:CDS | 40.0% |
| !! | AATATGGCTTGCTGCAATAG+AGG | - | chr1_1:62218413-62218432 | Msa0034280:intron | 40.0% |
| AGAAACATGGGAAACCTGTT+CGG | + | chr1_1:62218466-62218485 | None:intergenic | 40.0% | |
| ! | GTGAAGTGTTTAAGTGATGC+AGG | - | chr1_1:62218632-62218651 | Msa0034280:intron | 40.0% |
| CGCACAATGAGGAATATGTT+TGG | - | chr1_1:62218778-62218797 | Msa0034280:CDS | 40.0% | |
| ! | GTGGTTAATGGTTTGGAATG+TGG | + | chr1_1:62218925-62218944 | None:intergenic | 40.0% |
| GAACTGTGTGGTTAATGGTT+TGG | + | chr1_1:62218932-62218951 | None:intergenic | 40.0% | |
| CCAAAACTTGAAGAACTGTG+TGG | + | chr1_1:62218944-62218963 | None:intergenic | 40.0% | |
| !! | CCACACAGTTCTTCAAGTTT+TGG | - | chr1_1:62218941-62218960 | Msa0034280:intron | 40.0% |
| ! | AAGCTTAGGTTGTCAAGTGA+AGG | - | chr1_1:62218991-62219010 | Msa0034280:CDS | 40.0% |
| CAACAAAATGGACCCAACTT+CGG | - | chr1_1:62219146-62219165 | Msa0034280:intron | 40.0% | |
| !! | ACCATTGTTTCTACTCAACG+CGG | - | chr1_1:62219297-62219316 | Msa0034280:intron | 40.0% |
| ACGTGAACTATGTTTCCATC+AGG | - | chr1_1:62219450-62219469 | Msa0034280:intron | 40.0% | |
| AGAGATTGAAAACACCTTGG+AGG | + | chr1_1:62219571-62219590 | None:intergenic | 40.0% | |
| ATGTGATTGATCTGAGAGAC+AGG | - | chr1_1:62219972-62219991 | Msa0034280:intron | 40.0% | |
| ! | CTCTCCTCTTATTGATGACA+AGG | - | chr1_1:62220012-62220031 | Msa0034280:intron | 40.0% |
| TTATGGCAGCTATTGTCACA+GGG | + | chr1_1:62220222-62220241 | None:intergenic | 40.0% | |
| ATTATGGCAGCTATTGTCAC+AGG | + | chr1_1:62220223-62220242 | None:intergenic | 40.0% | |
| TGACAATAGCTGCCATAATC+TGG | - | chr1_1:62220224-62220243 | Msa0034280:five_prime_UTR | 40.0% | |
| ACTTCCCTCCTTGTATTGTT+TGG | - | chr1_1:62220296-62220315 | Msa0034280:five_prime_UTR | 40.0% | |
| CTTCCCTCCTTGTATTGTTT+GGG | - | chr1_1:62220297-62220316 | Msa0034280:five_prime_UTR | 40.0% | |
| ACACCCAAACAATACAAGGA+GGG | + | chr1_1:62220303-62220322 | None:intergenic | 40.0% | |
| TACACCCAAACAATACAAGG+AGG | + | chr1_1:62220304-62220323 | None:intergenic | 40.0% | |
| !!! | GAAGCTGCTGCTGATTTTGT+TGG | - | chr1_1:62216753-62216772 | Msa0034280:CDS | 45.0% |
| ! | GTTTCTGGGTTTATCTCCTC+TGG | - | chr1_1:62216796-62216815 | Msa0034280:intron | 45.0% |
| ! | AAGTGTTGTGTCAGATCCAG+AGG | + | chr1_1:62216815-62216834 | None:intergenic | 45.0% |
| AGAGTGAGGTCTACCATATG+AGG | + | chr1_1:62216883-62216902 | None:intergenic | 45.0% | |
| GTAGACCTCACTCTCATTCA+AGG | - | chr1_1:62216889-62216908 | Msa0034280:intron | 45.0% | |
| CTACACTGACACATAGACAC+TGG | + | chr1_1:62217393-62217412 | None:intergenic | 45.0% | |
| GACATACACAACATGGACAG+CGG | + | chr1_1:62217419-62217438 | None:intergenic | 45.0% | |
| GCTGTCCATGTTGTGTATGT+CGG | - | chr1_1:62217418-62217437 | Msa0034280:CDS | 45.0% | |
| !! | AAGCACCGACATACACAACA+TGG | + | chr1_1:62217426-62217445 | None:intergenic | 45.0% |
| ATCACCACAGTCTGTTTGGA+TGG | - | chr1_1:62217559-62217578 | Msa0034280:intron | 45.0% | |
| TGTTCCATCCAAACAGACTG+TGG | + | chr1_1:62217566-62217585 | None:intergenic | 45.0% | |
| TGTTTGGATGGAACATTGCC+TGG | - | chr1_1:62217571-62217590 | Msa0034280:intron | 45.0% | |
| TATGAATTCCTGTAGGGAGG+AGG | - | chr1_1:62217812-62217831 | Msa0034280:CDS | 45.0% | |
| TGCTGGAGACAGTGAAAATG+AGG | - | chr1_1:62218153-62218172 | Msa0034280:CDS | 45.0% | |
| ! | GGTTCTTTTATCCAGGCTGA+AGG | - | chr1_1:62218369-62218388 | Msa0034280:CDS | 45.0% |
| ! | TGGAGGTGTAGTTCAGTTAC+AGG | - | chr1_1:62218798-62218817 | Msa0034280:CDS | 45.0% |
| ! | CATTCTGAGGAAAGAAGCAC+TGG | + | chr1_1:62219258-62219277 | None:intergenic | 45.0% |
| GTGCTTCTTTCCTCAGAATG+TGG | - | chr1_1:62219258-62219277 | Msa0034280:intron | 45.0% | |
| ACATGTTCGACCACATTCTG+AGG | + | chr1_1:62219271-62219290 | None:intergenic | 45.0% | |
| TTGCAGTATTCCAAGAGCCA+GGG | + | chr1_1:62219509-62219528 | None:intergenic | 45.0% | |
| TTTGCAGTATTCCAAGAGCC+AGG | + | chr1_1:62219510-62219529 | None:intergenic | 45.0% | |
| TCTCAAATTCAGCTCCTCCA+AGG | - | chr1_1:62219554-62219573 | Msa0034280:intron | 45.0% | |
| TTGATCTGAGAGACAGGAGA+TGG | - | chr1_1:62219978-62219997 | Msa0034280:intron | 45.0% | |
| TCTCCAACAGCAACTGCAAT+TGG | + | chr1_1:62220155-62220174 | None:intergenic | 45.0% | |
| AGCTATTGTCACAGGGGTAA+GGG | + | chr1_1:62220215-62220234 | None:intergenic | 45.0% | |
| TATGGCAGCTATTGTCACAG+GGG | + | chr1_1:62220221-62220240 | None:intergenic | 45.0% | |
| CAGCTCCTTGAATGAGAGTG+AGG | + | chr1_1:62216897-62216916 | None:intergenic | 50.0% | |
| GAGAGAGATACCAGCTCCTT+TGG | + | chr1_1:62216923-62216942 | None:intergenic | 50.0% | |
| CGACATCTCACCGACATATG+TGG | - | chr1_1:62217332-62217351 | Msa0034280:intron | 50.0% | |
| CCACGATCCAAATGGTAACC+AGG | + | chr1_1:62217592-62217611 | None:intergenic | 50.0% | |
| CCTGGTTACCATTTGGATCG+TGG | - | chr1_1:62217589-62217608 | Msa0034280:intron | 50.0% | |
| AATTCCTGTAGGGAGGAGGA+TGG | - | chr1_1:62217816-62217835 | Msa0034280:CDS | 50.0% | |
| !! | TGTGATGGAGCGTCTTTTGC+TGG | - | chr1_1:62218136-62218155 | Msa0034280:CDS | 50.0% |
| GAAATTGAAGCCCTTCAGCC+TGG | + | chr1_1:62218383-62218402 | None:intergenic | 50.0% | |
| GCTGAAGGGCTTCAATTTCG+TGG | - | chr1_1:62218384-62218403 | Msa0034280:CDS | 50.0% | |
| AGGAATGCAGAATGCCGAAC+AGG | - | chr1_1:62218449-62218468 | Msa0034280:intron | 50.0% | |
| GTATATCAGGCCCTTCTCTC+TGG | - | chr1_1:62218536-62218555 | Msa0034280:CDS | 50.0% | |
| TATCTGGAGGACGCACAATG+AGG | - | chr1_1:62218767-62218786 | Msa0034280:intron | 50.0% | |
| GCACTGGACGAAACATGCTT+CGG | + | chr1_1:62219242-62219261 | None:intergenic | 50.0% | |
| GCCGCGTTGAGTAGAAACAA+TGG | + | chr1_1:62219301-62219320 | None:intergenic | 50.0% | |
| ATGACGTGTGGCAGGTAACA+TGG | - | chr1_1:62219323-62219342 | Msa0034280:CDS | 50.0% | |
| !! | CTAAACTGGCTTGGACCTGA+TGG | + | chr1_1:62219468-62219487 | None:intergenic | 50.0% |
| !! | TCTTTGGGGCTAAACTGGCT+TGG | + | chr1_1:62219477-62219496 | None:intergenic | 50.0% |
| !! | AGCTGTCTTTGGGGCTAAAC+TGG | + | chr1_1:62219482-62219501 | None:intergenic | 50.0% |
| TGCAGTATTCCAAGAGCCAG+GGG | + | chr1_1:62219508-62219527 | None:intergenic | 50.0% | |
| CAGCCAATTGCAGTTGCTGT+TGG | - | chr1_1:62220149-62220168 | Msa0034280:CDS | 50.0% | |
| ! | TTGCAGTTGCTGTTGGAGAC+TGG | - | chr1_1:62220156-62220175 | Msa0034280:CDS | 50.0% |
| CAGCTATTGTCACAGGGGTA+AGG | + | chr1_1:62220216-62220235 | None:intergenic | 50.0% | |
| ! | GGAGCTGATTCCAAAGGAGC+TGG | - | chr1_1:62216910-62216929 | Msa0034280:intron | 55.0% |
| ! | CGCAGAGCATCCAGAGAGAA+GGG | + | chr1_1:62218549-62218568 | None:intergenic | 55.0% |
| CCTTCTCTCTGGATGCTCTG+CGG | - | chr1_1:62218547-62218566 | Msa0034280:intron | 55.0% | |
| CTTCTCTCTGGATGCTCTGC+GGG | - | chr1_1:62218548-62218567 | Msa0034280:intron | 55.0% | |
| TCAACGCGGCTTATGACGTG+TGG | - | chr1_1:62219311-62219330 | Msa0034280:CDS | 55.0% | |
| GCAGTATTCCAAGAGCCAGG+GGG | + | chr1_1:62219507-62219526 | None:intergenic | 55.0% | |
| CACACCATCCTCCTCCCTAC+AGG | + | chr1_1:62217823-62217842 | None:intergenic | 60.0% | |
| ! | CCGCAGAGCATCCAGAGAGA+AGG | + | chr1_1:62218550-62218569 | None:intergenic | 60.0% |
| CAGGGGGTCAGCTGTCTTTG+GGG | + | chr1_1:62219491-62219510 | None:intergenic | 60.0% | |
| CCAGGGGGTCAGCTGTCTTT+GGG | + | chr1_1:62219492-62219511 | None:intergenic | 60.0% | |
| CTCTCTGGATGCTCTGCGGG+TGG | - | chr1_1:62218551-62218570 | Msa0034280:intron | 65.0% | |
| CGCGGCTTATGACGTGTGGC+AGG | - | chr1_1:62219315-62219334 | Msa0034280:CDS | 65.0% | |
| CCCAAAGACAGCTGACCCCC+TGG | - | chr1_1:62219489-62219508 | Msa0034280:intron | 65.0% | |
| GCCAGGGGGTCAGCTGTCTT+TGG | + | chr1_1:62219493-62219512 | None:intergenic | 65.0% | |
| ! | ACAGCTGACCCCCTGGCTCT+TGG | - | chr1_1:62219496-62219515 | Msa0034280:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62216491 | 62220458 | 62216491 | ID=Msa0034280;Name=Msa0034280 |
| chr1_1 | mRNA | 62216491 | 62220458 | 62216491 | ID=Msa0034280-mRNA-1;Parent=Msa0034280;Name=Msa0034280-mRNA-1;_AED=0.14;_eAED=0.14;_QI=254|0.8|0.81|1|0.7|0.81|11|195|367 |
| chr1_1 | exon | 62216491 | 62216797 | 62216491 | ID=Msa0034280-mRNA-1:exon:19655;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62217404 | 62217477 | 62217404 | ID=Msa0034280-mRNA-1:exon:19654;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62217613 | 62217690 | 62217613 | ID=Msa0034280-mRNA-1:exon:19653;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62217782 | 62217835 | 62217782 | ID=Msa0034280-mRNA-1:exon:19652;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62218130 | 62218190 | 62218130 | ID=Msa0034280-mRNA-1:exon:19651;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62218280 | 62218404 | 62218280 | ID=Msa0034280-mRNA-1:exon:19650;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62218479 | 62218565 | 62218479 | ID=Msa0034280-mRNA-1:exon:19649;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62218775 | 62218848 | 62218775 | ID=Msa0034280-mRNA-1:exon:19648;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62218954 | 62219122 | 62218954 | ID=Msa0034280-mRNA-1:exon:19647;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62219298 | 62219380 | 62219298 | ID=Msa0034280-mRNA-1:exon:19646;Parent=Msa0034280-mRNA-1 |
| chr1_1 | exon | 62220018 | 62220458 | 62220018 | ID=Msa0034280-mRNA-1:exon:19645;Parent=Msa0034280-mRNA-1 |
| chr1_1 | five_prime_UTR | 62220205 | 62220458 | 62220205 | ID=Msa0034280-mRNA-1:five_prime_utr;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62220018 | 62220204 | 62220018 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62219298 | 62219380 | 62219298 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62218954 | 62219122 | 62218954 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62218775 | 62218848 | 62218775 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62218479 | 62218565 | 62218479 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62218280 | 62218404 | 62218280 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62218130 | 62218190 | 62218130 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62217782 | 62217835 | 62217782 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62217613 | 62217690 | 62217613 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62217404 | 62217477 | 62217404 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | CDS | 62216686 | 62216797 | 62216686 | ID=Msa0034280-mRNA-1:cds;Parent=Msa0034280-mRNA-1 |
| chr1_1 | three_prime_UTR | 62216491 | 62216685 | 62216491 | ID=Msa0034280-mRNA-1:three_prime_utr;Parent=Msa0034280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
