AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339640 MtrunA17_Chr2g0328261 98.846 260 3 0 1 260 1 260 0.0 534
Msa0339640 MtrunA17_Chr5g0435311 86.694 248 33 0 13 260 61 308 1.66e-165 460
Msa0339640 MtrunA17_Chr4g0031621 87.209 258 33 0 3 260 1 258 3.05e-163 452
Msa0339640 MtrunA17_Chr7g0238681 81.783 258 47 0 3 260 1 258 2.79e-160 445
Msa0339640 MtrunA17_Chr3g0128801 68.217 258 77 3 1 258 1 253 3.15e-127 361
Msa0339640 MtrunA17_Chr3g0128791 67.451 255 79 2 6 258 1 253 1.51e-126 359
Msa0339640 MtrunA17_Chr5g0417701 72.926 229 60 1 31 259 22 248 2.83e-125 356
Msa0339640 MtrunA17_Chr4g0042521 69.444 252 67 4 6 255 1 244 9.84e-124 352
Msa0339640 MtrunA17_Chr5g0432611 67.600 250 76 3 11 258 5 251 4.09e-122 348
Msa0339640 MtrunA17_Chr3g0107291 66.275 255 80 2 4 258 12 260 2.79e-120 343
Msa0339640 MtrunA17_Chr3g0107311 66.537 257 82 3 3 258 1 254 9.28e-120 342
Msa0339640 MtrunA17_Chr3g0092071 71.111 225 63 1 34 258 25 247 4.48e-119 340
Msa0339640 MtrunA17_Chr7g0217661 63.563 247 80 2 12 258 4 240 3.49e-112 322
Msa0339640 MtrunA17_Chr1g0193631 66.079 227 73 3 33 256 29 254 1.27e-107 311
Msa0339640 MtrunA17_Chr7g0271001 59.289 253 95 4 4 253 1 248 5.23e-107 310
Msa0339640 MtrunA17_Chr4g0069711 59.031 227 90 2 32 257 59 283 5.72e-102 298
Msa0339640 MtrunA17_Chr6g0453341 61.265 253 87 3 6 258 11 252 2.98e-99 290
Msa0339640 MtrunA17_Chr1g0157061 64.220 218 75 2 41 256 22 238 3.44e-98 287
Msa0339640 MtrunA17_Chr7g0218751 53.725 255 110 2 1 255 1 247 4.91e-95 279
Msa0339640 MtrunA17_Chr8g0360041 57.658 222 92 1 34 255 31 250 6.06e-94 276
Msa0339640 MtrunA17_Chr7g0218741 56.696 224 94 2 34 256 29 250 2.45e-93 275
Msa0339640 MtrunA17_Chr4g0057091 51.383 253 120 3 9 259 11 262 3.94e-92 272
Msa0339640 MtrunA17_Chr5g0398271 50.602 249 121 2 9 256 12 259 5.46e-92 272
Msa0339640 MtrunA17_Chr7g0218761 60.294 204 79 1 53 256 8 209 6.83e-89 262
Msa0339640 MtrunA17_Chr5g0433841 55.111 225 100 1 34 258 41 264 3.06e-88 263
Msa0339640 MtrunA17_Chr8g0360721 59.701 201 79 1 53 253 17 215 4.26e-88 261
Msa0339640 MtrunA17_Chr4g0021561 46.825 252 131 1 7 258 8 256 1.08e-86 258
Msa0339640 MtrunA17_Chr3g0109801 53.617 235 100 5 33 259 52 285 2.06e-81 246
Msa0339640 MtrunA17_Chr4g0022841 61.207 116 45 0 140 255 1 116 7.99e-45 147
Msa0339640 MtrunA17_Chr4g0022851 53.968 126 51 2 6 131 7 125 5.90e-42 140
Msa0339640 MtrunA17_Chr2g0324191 37.342 158 93 1 1 158 1 152 1.02e-40 137
Msa0339640 MtrunA17_Chr2g0324181 57.426 101 43 0 158 258 17 117 1.17e-34 120
Msa0339640 MtrunA17_Chr2g0324221 28.030 264 163 10 5 256 7 255 1.31e-23 96.3
Msa0339640 MtrunA17_Chr4g0021641 30.638 235 137 11 34 256 41 261 5.02e-21 89.4
Msa0339640 MtrunA17_Chr2g0324201 27.863 262 160 11 10 256 6 253 1.14e-20 88.2
Msa0339640 MtrunA17_Chr8g0359981 48.837 86 35 4 76 158 2 81 3.96e-20 83.2
Msa0339640 MtrunA17_Chr8g0359971 46.250 80 42 1 179 257 1 80 1.14e-19 80.9
Msa0339640 MtrunA17_Chr4g0012801 29.661 236 131 11 34 253 42 258 1.70e-19 85.1
Msa0339640 MtrunA17_Chr7g0231221 29.870 231 132 12 39 253 53 269 2.89e-17 79.3
Msa0339640 MtrunA17_Chr7g0231211 27.966 236 136 12 34 253 47 264 1.04e-15 74.7
Msa0339640 MtrunA17_Chr1g0193571 55.932 59 25 1 203 260 4 62 1.16e-13 64.3
Msa0339640 MtrunA17_Chr4g0038741 26.667 225 130 9 45 253 32 237 1.85e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339640 AT2G39700.1 83.137 255 42 1 7 260 3 257 2.68e-163 452
Msa0339640 AT2G28950.1 84.825 257 39 0 4 260 1 257 1.20e-159 443
Msa0339640 AT3G55500.1 76.923 260 60 0 1 260 1 260 3.96e-155 432
Msa0339640 AT2G37640.1 78.486 251 54 0 10 260 12 262 1.97e-151 423
Msa0339640 AT5G02260.1 75.194 258 64 0 3 260 1 258 4.22e-149 417
Msa0339640 AT2G37640.2 80.952 210 40 0 51 260 28 237 3.07e-130 368
Msa0339640 AT1G69530.2 67.729 251 78 2 9 259 3 250 1.62e-122 349
Msa0339640 AT1G69530.1 67.729 251 78 2 9 259 3 250 1.62e-122 349
Msa0339640 AT1G69530.3 67.331 251 79 2 9 259 3 250 3.33e-121 347
Msa0339640 AT5G56320.1 65.234 256 85 3 6 260 1 253 5.01e-120 343
Msa0339640 AT5G56320.2 65.234 256 85 3 6 260 1 253 5.01e-120 343
Msa0339640 AT2G03090.1 70.996 231 64 2 29 259 26 253 1.70e-119 342
Msa0339640 AT5G56320.3 65.234 256 85 3 6 260 1 253 2.92e-119 343
Msa0339640 AT5G05290.1 63.780 254 84 3 6 258 9 255 1.21e-118 340
Msa0339640 AT2G40610.1 69.565 230 67 2 30 258 26 253 1.01e-115 332
Msa0339640 AT1G26770.1 69.796 245 71 2 16 259 7 249 2.17e-114 328
Msa0339640 AT1G26770.2 69.796 245 71 2 16 259 17 259 2.90e-114 328
Msa0339640 AT3G29030.1 66.372 226 67 2 34 259 38 254 2.95e-107 311
Msa0339640 AT4G01630.1 62.097 248 85 5 9 253 8 249 4.93e-107 310
Msa0339640 AT1G69530.4 61.355 251 64 3 9 259 3 220 2.72e-106 307
Msa0339640 AT1G69530.5 60.956 251 65 3 9 259 3 220 3.78e-105 305
Msa0339640 AT1G20190.1 61.803 233 80 3 24 254 22 247 3.16e-99 290
Msa0339640 AT5G39290.1 50.542 277 110 4 3 256 4 276 1.16e-95 282
Msa0339640 AT5G39270.1 50.542 277 110 4 3 256 4 276 2.21e-95 281
Msa0339640 AT1G62980.1 52.941 255 117 3 3 256 1 253 3.43e-92 273
Msa0339640 AT5G39300.1 51.136 264 112 5 6 256 14 273 1.16e-90 270
Msa0339640 AT5G39280.1 56.250 224 94 2 33 256 53 272 1.64e-90 269
Msa0339640 AT1G12560.1 54.008 237 105 4 25 259 28 262 7.53e-89 264
Msa0339640 AT3G03220.1 53.744 227 104 1 34 260 40 265 6.37e-87 259
Msa0339640 AT5G39310.1 55.357 224 95 3 34 256 90 309 2.99e-85 257
Msa0339640 AT4G38210.1 45.968 248 132 1 14 259 8 255 1.50e-79 240
Msa0339640 AT1G20190.2 60.106 188 72 2 69 254 2 188 2.14e-78 235
Msa0339640 AT3G15370.1 47.638 254 117 7 7 256 6 247 2.15e-75 230
Msa0339640 AT5G39260.1 52.000 225 98 3 33 256 44 259 7.71e-75 229
Msa0339640 AT3G15370.2 42.756 283 116 8 8 256 7 277 9.63e-69 214
Msa0339640 AT4G28250.1 30.085 236 138 10 34 256 36 257 1.35e-22 94.0
Msa0339640 AT2G20750.1 29.958 237 140 10 34 256 40 264 1.19e-21 91.7
Msa0339640 AT1G65680.1 30.213 235 135 11 34 253 47 267 2.61e-20 87.8
Msa0339640 AT4G28250.2 28.936 235 136 10 34 256 36 251 7.55e-19 83.6
Msa0339640 AT2G20750.2 30.857 175 99 7 34 197 40 203 9.10e-15 71.6
Msa0339640 AT4G28250.4 31.073 177 93 8 34 200 36 193 1.38e-13 68.2
Msa0339640 AT4G28250.3 31.034 174 91 8 34 197 36 190 4.86e-13 66.6
Msa0339640 AT3G60570.1 23.723 274 180 8 1 260 1 259 5.11e-13 67.4
Msa0339640 AT3G45970.2 25.352 213 137 9 52 253 14 215 5.28e-13 67.0
Msa0339640 AT4G17030.1 25.100 251 165 9 13 253 6 243 3.16e-12 65.1

Find 102 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTAGGTTCACAATAAA+TGG 0.188659 2_4:-60888725 Msa0339640:CDS
ATTAGGGTAGAGGAGTTATT+TGG 0.226107 2_4:-60888184 Msa0339640:three_prime_UTR
TTTCCAATTTGAACTTTCAT+AGG 0.238828 2_4:+60888022 None:intergenic
ACCGTCGCACTTCCACTTCT+TGG 0.241176 2_4:-60888523 Msa0339640:CDS
GGAACATTGCTCCACATAAT+TGG 0.246045 2_4:-60888502 Msa0339640:CDS
GCTCCACATAATTGGCAATT+TGG 0.259736 2_4:-60888494 Msa0339640:CDS
TCACTAGGTTGAGCAAAATT+AGG 0.282502 2_4:+60889537 None:intergenic
AACCCTATGAAAGTTCAAAT+TGG 0.295692 2_4:-60888025 Msa0339640:three_prime_UTR
TTGGCAATCAAATTCAGTTT+TGG 0.302765 2_4:-60888582 Msa0339640:CDS
GACAAGCAGTGGTGTCATTC+TGG 0.336967 2_4:-60889600 Msa0339640:CDS
TATGTTAAGGGCACTAAAAC+AGG 0.337612 2_4:-60888638 Msa0339640:CDS
GGATGCCAATGAGCAGAAAC+TGG 0.338905 2_4:-60888613 Msa0339640:CDS
GTTAGTTGCTGTGATGAAAA+TGG 0.339967 2_4:+60889569 None:intergenic
TTAGGAGGAGCATGTGGATA+TGG 0.344997 2_4:-60889729 Msa0339640:intron
GTCCTAATCAGCAACGTTGC+AGG 0.348958 2_4:-60888683 Msa0339640:CDS
GTGTCAAAGTGGATAATTAA+AGG 0.352597 2_4:-60888268 Msa0339640:three_prime_UTR
AGAAATGGGTATGGTGAGTA+TGG 0.353816 2_4:-60890028 Msa0339640:exon
GGAACAGAGAGAAAGAGATA+TGG 0.360476 2_4:+60890131 None:intergenic
GTAGGAAGCGTGGTGGGATT+AGG 0.372081 2_4:-60888739 Msa0339640:CDS
CACCTGCAACGTTGCTGATT+AGG 0.375478 2_4:+60888681 None:intergenic
GCTTTGTCCTTCAGAGTTAC+CGG 0.383935 2_4:-60888551 Msa0339640:CDS
CAATTTGGTCAAACTTTCAC+TGG 0.389947 2_4:-60888479 Msa0339640:CDS
ATCAGCAACGTTGCAGGTGC+AGG 0.391465 2_4:-60888677 Msa0339640:CDS
AGCAGTATCATAATGTTTGT+TGG 0.397550 2_4:-60887940 Msa0339640:three_prime_UTR
AAAGGCGACAGGGACGATTC+CGG 0.402838 2_4:+60889434 None:intergenic
TACGGAGGTTCCGATGCTTC+CGG 0.415576 2_4:-60889901 Msa0339640:CDS
TATAGTGAGGACCTATGTTA+AGG 0.434796 2_4:-60888651 Msa0339640:CDS
AACTTGTATAGTCAAGGTTA+TGG 0.443205 2_4:-60889705 Msa0339640:CDS
TTTCGTGTTTGATTGATCAA+TGG 0.444722 2_4:-60888449 Msa0339640:exon
GAACAGAGAGAAAGAGATAT+GGG 0.447162 2_4:+60890132 None:intergenic
TCGTCCCTGTCGCCTTTCGC+CGG 0.466817 2_4:-60889428 Msa0339640:intron
TGACCAAATTGCCAATTATG+TGG 0.467767 2_4:+60888491 None:intergenic
ACAAACCGGCGAAAGGCGAC+AGG 0.470017 2_4:+60889423 None:intergenic
GGTAGAGGAGTTATTTGGAA+AGG 0.475636 2_4:-60888179 Msa0339640:three_prime_UTR
TTCCAATTTGAACTTTCATA+GGG 0.483127 2_4:+60888023 None:intergenic
AATGGAAAAGATTAGGGTAG+AGG 0.486775 2_4:-60888194 Msa0339640:three_prime_UTR
TCCGATGCTTCCGGCACCAT+GGG 0.492789 2_4:-60889892 Msa0339640:intron
TATAGAAATGTGTGTCAAAG+TGG 0.512839 2_4:-60888279 Msa0339640:three_prime_UTR
ATCCCACCACGCTTCCTACA+TGG 0.515202 2_4:+60888743 None:intergenic
TAACAACCAACACACCTCAA+TGG 0.517555 2_4:+60888047 None:intergenic
ATAGTGAGGACCTATGTTAA+GGG 0.521329 2_4:-60888650 Msa0339640:CDS
GCACCACCATTGTAAACACC+TGG 0.523553 2_4:+60889949 None:intergenic
ACCCATGGTGCCGGAAGCAT+CGG 0.533485 2_4:+60889891 None:intergenic
TGGAGCAATGTTCCAAGAAG+TGG 0.536985 2_4:+60888511 None:intergenic
TTGTATAACTAATTAGCTGC+GGG 0.539425 2_4:+60888108 None:intergenic
GTACTACATCCCCACTCAAA+GGG 0.551778 2_4:+60887964 None:intergenic
AGAGATATGGGTGGAACGAG+TGG 0.558962 2_4:+60890144 None:intergenic
GATGCCAATGAGCAGAAACT+GGG 0.559055 2_4:-60888612 Msa0339640:CDS
ATGTATCCATTGAGGTGTGT+TGG 0.560476 2_4:-60888053 Msa0339640:three_prime_UTR
TCAGCAACGTTGCAGGTGCA+GGG 0.562393 2_4:-60888676 Msa0339640:CDS
TTCCGATGCTTCCGGCACCA+TGG 0.566242 2_4:-60889893 Msa0339640:CDS
TTCAACAATGGACTAAGTTG+TGG 0.574416 2_4:-60889651 Msa0339640:CDS
GTAGGGTACAAACCGGCGAA+AGG 0.576269 2_4:+60889416 None:intergenic
ATGGTAAATGCTAGAATCCC+AGG 0.576542 2_4:-60889967 Msa0339640:CDS
TGTACTACATCCCCACTCAA+AGG 0.576635 2_4:+60887963 None:intergenic
GGAAGTGCGACGGTCACTAC+CGG 0.579926 2_4:+60888532 None:intergenic
CACCAACCACCATTGTCACT+AGG 0.581152 2_4:+60889522 None:intergenic
AAGTGTAGGAAATGTTGAAG+TGG 0.584474 2_4:-60888148 Msa0339640:three_prime_UTR
ATTGTATAACTAATTAGCTG+CGG 0.584992 2_4:+60888107 None:intergenic
TATGGAAACTTGTATAGTCA+AGG 0.585100 2_4:-60889711 Msa0339640:CDS
GTCACTACCGGTAACTCTGA+AGG 0.588519 2_4:+60888544 None:intergenic
AAAGTGGATAATTAAAGGAG+TGG 0.590383 2_4:-60888263 Msa0339640:three_prime_UTR
ATCCCAGGTGTTTACAATGG+TGG 0.596482 2_4:-60889952 Msa0339640:CDS
TAGGAAATGTTGAAGTGGCT+AGG 0.607621 2_4:-60888143 Msa0339640:three_prime_UTR
ACTAGACGTACCCATGGTGC+CGG 0.607745 2_4:+60889882 None:intergenic
TTTGCTCAACCTAGTGACAA+TGG 0.609073 2_4:-60889531 Msa0339640:CDS
GCAAGATCAAAGTGAGGACG+AGG 0.609633 2_4:+60889492 None:intergenic
TCCAAGAAGTGGAAGTGCGA+CGG 0.611335 2_4:+60888522 None:intergenic
TATGTCACTAACAATGTGGA+TGG 0.613645 2_4:-60889986 Msa0339640:CDS
AACCTAGTGACAATGGTGGT+TGG 0.618881 2_4:-60889524 Msa0339640:CDS
CAGCAACGTTGCAGGTGCAG+GGG 0.618959 2_4:-60888675 Msa0339640:CDS
GATTATGCAGGGTGCCATGT+AGG 0.619428 2_4:-60888757 Msa0339640:intron
TGCCATGTAGGAAGCGTGGT+GGG 0.620597 2_4:-60888745 Msa0339640:CDS
TTAGGACTAAGTTAAAGTAA+CGG 0.623009 2_4:+60888699 None:intergenic
GTGTGTTTAGGAGGAGCATG+TGG 0.626776 2_4:-60889735 Msa0339640:intron
AGATCAAAGTGAGGACGAGG+AGG 0.633474 2_4:+60889495 None:intergenic
CTAGGTTGAGCAAAATTAGG+AGG 0.633552 2_4:+60889540 None:intergenic
CAAACCGGCGAAAGGCGACA+GGG 0.633653 2_4:+60889424 None:intergenic
AAAATTGCTGAATATCGCGC+CGG 0.644009 2_4:-60889453 Msa0339640:CDS
CAGAGAGAAAGAGATATGGG+TGG 0.647807 2_4:+60890135 None:intergenic
CACCACCATTGTAAACACCT+GGG 0.648144 2_4:+60889950 None:intergenic
ATTGCTCTATGTATCCATTG+AGG 0.651374 2_4:-60888061 Msa0339640:three_prime_UTR
GTGTTTACAATGGTGGTGCA+TGG 0.652108 2_4:-60889945 Msa0339640:CDS
AGCACAGCACTATTCAACAA+TGG 0.654867 2_4:-60889663 Msa0339640:CDS
GTGCCATGTAGGAAGCGTGG+TGG 0.655283 2_4:-60888746 Msa0339640:CDS
AGAATCCCAGGTGTTTACAA+TGG 0.660050 2_4:-60889955 Msa0339640:CDS
GTTGCTGTGATGAAAATGGA+AGG 0.660102 2_4:+60889573 None:intergenic
ATGTTAAGGGCACTAAAACA+GGG 0.661896 2_4:-60888637 Msa0339640:CDS
TCAATGGTTACTTGCCACGT+AGG 0.663827 2_4:-60888433 Msa0339640:three_prime_UTR
TTATTATGTCACTAACAATG+TGG 0.670910 2_4:-60889990 Msa0339640:CDS
CAGGTGCAGGGGATATAGTG+AGG 0.673660 2_4:-60888664 Msa0339640:CDS
ATGCCAATGAGCAGAAACTG+GGG 0.677827 2_4:-60888611 Msa0339640:CDS
GATCAAAGTGAGGACGAGGA+GGG 0.681799 2_4:+60889496 None:intergenic
AGGGTGCCATGTAGGAAGCG+TGG 0.699181 2_4:-60888749 Msa0339640:CDS
TGCCAATGAGCAGAAACTGG+GGG 0.704067 2_4:-60888610 Msa0339640:CDS
TTGCTGTGATGAAAATGGAA+GGG 0.708603 2_4:+60889574 None:intergenic
TGTTTGTTGGAAGAAATGCA+AGG 0.709674 2_4:-60887927 Msa0339640:three_prime_UTR
GGCATGGCAAGATCAAAGTG+AGG 0.710022 2_4:+60889486 None:intergenic
GCTCAACCTAGTGACAATGG+TGG 0.714318 2_4:-60889528 Msa0339640:CDS
AGTGTGCAAATGACAAGCAG+TGG 0.728732 2_4:-60889611 Msa0339640:CDS
CACATTATATATGACCTACG+TGG 0.732132 2_4:+60888419 None:intergenic
TTAAGGGCACTAAAACAGGG+TGG 0.761599 2_4:-60888634 Msa0339640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGATTTAGTTTAAAAAAAT+TGG + chr2_4:60888013-60888032 None:intergenic 10.0%
!!! TAGATTTAGTTTAAAAAAAT+TGG + chr2_4:60888013-60888032 None:intergenic 10.0%
!!! ATATATAAGCACTTTTATTA+GGG + chr2_4:60888987-60889006 None:intergenic 15.0%
!!! TATATATAAGCACTTTTATT+AGG + chr2_4:60888988-60889007 None:intergenic 15.0%
!! AAACTTAAAATAGTTTATGA+AGG - chr2_4:60889101-60889120 Msa0339640:intron 15.0%
!!! TTTTAGATTTGTATGAAAAA+TGG - chr2_4:60889864-60889883 Msa0339640:intron 15.0%
!!! ATATATAAGCACTTTTATTA+GGG + chr2_4:60888987-60889006 None:intergenic 15.0%
!!! TATATATAAGCACTTTTATT+AGG + chr2_4:60888988-60889007 None:intergenic 15.0%
!! AAACTTAAAATAGTTTATGA+AGG - chr2_4:60889101-60889120 Msa0339640:intron 15.0%
!!! TTTTAGATTTGTATGAAAAA+TGG - chr2_4:60889864-60889883 Msa0339640:intron 15.0%
!! AGAAGAAAAAAAAACAGAAA+TGG - chr2_4:60888033-60888052 Msa0339640:three_prime_UTR 20.0%
!! GAAGAAAAAAAAACAGAAAT+GGG - chr2_4:60888034-60888053 Msa0339640:three_prime_UTR 20.0%
!! AGCAAATAAGAAAAAATGTA+GGG + chr2_4:60888680-60888699 None:intergenic 20.0%
!!! TGCTCTATTAAAATTGATTT+TGG - chr2_4:60888696-60888715 Msa0339640:CDS 20.0%
!! TAAATGACTTGAATGTTAAA+TGG - chr2_4:60888811-60888830 Msa0339640:intron 20.0%
!!! AATAAGAAGTGTATAGATAA+TGG - chr2_4:60888879-60888898 Msa0339640:intron 20.0%
!!! ATAAGAAGTGTATAGATAAT+GGG - chr2_4:60888880-60888899 Msa0339640:intron 20.0%
!! ATTAGTTATTTATTCCAACA+TGG + chr2_4:60888923-60888942 None:intergenic 20.0%
!! TATGAAAAATGGAAAAGATT+AGG - chr2_4:60889875-60889894 Msa0339640:intron 20.0%
!! ATGAAAAATGGAAAAGATTA+GGG - chr2_4:60889876-60889895 Msa0339640:intron 20.0%
!! AGAAGAAAAAAAAACAGAAA+TGG - chr2_4:60888033-60888052 Msa0339640:three_prime_UTR 20.0%
!! GAAGAAAAAAAAACAGAAAT+GGG - chr2_4:60888034-60888053 Msa0339640:three_prime_UTR 20.0%
!! AGCAAATAAGAAAAAATGTA+GGG + chr2_4:60888680-60888699 None:intergenic 20.0%
!!! TGCTCTATTAAAATTGATTT+TGG - chr2_4:60888696-60888715 Msa0339640:CDS 20.0%
!! TAAATGACTTGAATGTTAAA+TGG - chr2_4:60888811-60888830 Msa0339640:intron 20.0%
!!! AATAAGAAGTGTATAGATAA+TGG - chr2_4:60888879-60888898 Msa0339640:intron 20.0%
!!! ATAAGAAGTGTATAGATAAT+GGG - chr2_4:60888880-60888899 Msa0339640:intron 20.0%
!! ATTAGTTATTTATTCCAACA+TGG + chr2_4:60888923-60888942 None:intergenic 20.0%
!! TATGAAAAATGGAAAAGATT+AGG - chr2_4:60889875-60889894 Msa0339640:intron 20.0%
!! ATGAAAAATGGAAAAGATTA+GGG - chr2_4:60889876-60889895 Msa0339640:intron 20.0%
! TTAAAAAAATTGGACAGTTG+AGG + chr2_4:60888003-60888022 None:intergenic 25.0%
! AAAAAAAACAGAAATGGGTA+TGG - chr2_4:60888039-60888058 Msa0339640:three_prime_UTR 25.0%
! TTATTATGTCACTAACAATG+TGG - chr2_4:60888086-60888105 Msa0339640:three_prime_UTR 25.0%
! GAGCAAATAAGAAAAAATGT+AGG + chr2_4:60888681-60888700 None:intergenic 25.0%
!!! TAGATAATGGGAGAATAAAT+TGG - chr2_4:60888892-60888911 Msa0339640:intron 25.0%
! GAAAACATCTTATGACTTAT+AGG + chr2_4:60889052-60889071 None:intergenic 25.0%
!!! TTTTCTTAACTTCTTTGAAG+TGG + chr2_4:60889080-60889099 None:intergenic 25.0%
!! GGATTGACATAATTTTTGTT+AGG + chr2_4:60889190-60889209 None:intergenic 25.0%
!! AAGTAAATAAGCCTTATCTA+AGG + chr2_4:60889220-60889239 None:intergenic 25.0%
!!! TTTTGTTATGTTGATTATGC+AGG - chr2_4:60889307-60889326 Msa0339640:intron 25.0%
!! TTTGTTATGTTGATTATGCA+GGG - chr2_4:60889308-60889327 Msa0339640:intron 25.0%
! TTAGGACTAAGTTAAAGTAA+CGG + chr2_4:60889380-60889399 None:intergenic 25.0%
! ATTGTATAACTAATTAGCTG+CGG + chr2_4:60889972-60889991 None:intergenic 25.0%
! TTCCAATTTGAACTTTCATA+GGG + chr2_4:60890056-60890075 None:intergenic 25.0%
! TTTCCAATTTGAACTTTCAT+AGG + chr2_4:60890057-60890076 None:intergenic 25.0%
! TTAAAAAAATTGGACAGTTG+AGG + chr2_4:60888003-60888022 None:intergenic 25.0%
! AAAAAAAACAGAAATGGGTA+TGG - chr2_4:60888039-60888058 Msa0339640:three_prime_UTR 25.0%
! TTATTATGTCACTAACAATG+TGG - chr2_4:60888086-60888105 Msa0339640:three_prime_UTR 25.0%
! GAGCAAATAAGAAAAAATGT+AGG + chr2_4:60888681-60888700 None:intergenic 25.0%
!!! TAGATAATGGGAGAATAAAT+TGG - chr2_4:60888892-60888911 Msa0339640:intron 25.0%
! GAAAACATCTTATGACTTAT+AGG + chr2_4:60889052-60889071 None:intergenic 25.0%
!!! TTTTCTTAACTTCTTTGAAG+TGG + chr2_4:60889080-60889099 None:intergenic 25.0%
!! GGATTGACATAATTTTTGTT+AGG + chr2_4:60889190-60889209 None:intergenic 25.0%
!! AAGTAAATAAGCCTTATCTA+AGG + chr2_4:60889220-60889239 None:intergenic 25.0%
!!! TTTTGTTATGTTGATTATGC+AGG - chr2_4:60889307-60889326 Msa0339640:intron 25.0%
!! TTTGTTATGTTGATTATGCA+GGG - chr2_4:60889308-60889327 Msa0339640:intron 25.0%
! TTAGGACTAAGTTAAAGTAA+CGG + chr2_4:60889380-60889399 None:intergenic 25.0%
! ATTGTATAACTAATTAGCTG+CGG + chr2_4:60889972-60889991 None:intergenic 25.0%
! TTCCAATTTGAACTTTCATA+GGG + chr2_4:60890056-60890075 None:intergenic 25.0%
! TTTCCAATTTGAACTTTCAT+AGG + chr2_4:60890057-60890076 None:intergenic 25.0%
AGAAAATAGAGAAAAAGCAG+AGG + chr2_4:60887974-60887993 None:intergenic 30.0%
!!! TTTGCCTTTTTTGTGTGTTT+AGG - chr2_4:60888329-60888348 Msa0339640:three_prime_UTR 30.0%
TATGGAAACTTGTATAGTCA+AGG - chr2_4:60888365-60888384 Msa0339640:three_prime_UTR 30.0%
AACTTGTATAGTCAAGGTTA+TGG - chr2_4:60888371-60888390 Msa0339640:three_prime_UTR 30.0%
!! AATTTTAAGGAACATAGGCA+TGG + chr2_4:60888609-60888628 None:intergenic 30.0%
!! TCAGCAATTTTAAGGAACAT+AGG + chr2_4:60888614-60888633 None:intergenic 30.0%
AAAAAATGTAGGGTACAAAC+CGG + chr2_4:60888670-60888689 None:intergenic 30.0%
AAACAAACACTTGATGTCAT+CGG + chr2_4:60888730-60888749 None:intergenic 30.0%
!! CAAGTGTTTGTTTGATTTTG+TGG - chr2_4:60888737-60888756 Msa0339640:CDS 30.0%
TGTGATAGATCTCAATGATA+AGG - chr2_4:60888838-60888857 Msa0339640:intron 30.0%
ATAAATTGGTAAGACCATGT+TGG - chr2_4:60888906-60888925 Msa0339640:intron 30.0%
! TTGGCAATCAAATTCAGTTT+TGG - chr2_4:60889494-60889513 Msa0339640:CDS 30.0%
!! CAATCAAATTCAGTTTTGGT+GGG - chr2_4:60889498-60889517 Msa0339640:CDS 30.0%
TTTCGTGTTTGATTGATCAA+TGG - chr2_4:60889627-60889646 Msa0339640:CDS 30.0%
! TTTTCCACCAATTGTGTTTT+TGG - chr2_4:60889713-60889732 Msa0339640:CDS 30.0%
TCAAAAAGAACACCAATCTA+TGG + chr2_4:60889751-60889770 None:intergenic 30.0%
TATAGAAATGTGTGTCAAAG+TGG - chr2_4:60889797-60889816 Msa0339640:intron 30.0%
GTGTCAAAGTGGATAATTAA+AGG - chr2_4:60889808-60889827 Msa0339640:intron 30.0%
AAAGTGGATAATTAAAGGAG+TGG - chr2_4:60889813-60889832 Msa0339640:intron 30.0%
! GAAAGGATGAAAAAAAGTGT+AGG - chr2_4:60889914-60889933 Msa0339640:CDS 30.0%
TTGTATAACTAATTAGCTGC+GGG + chr2_4:60889971-60889990 None:intergenic 30.0%
AACCCTATGAAAGTTCAAAT+TGG - chr2_4:60890051-60890070 Msa0339640:five_prime_UTR 30.0%
! TTCAATTTTACCCTTTGAGT+GGG - chr2_4:60890102-60890121 Msa0339640:five_prime_UTR 30.0%
AGCAGTATCATAATGTTTGT+TGG - chr2_4:60890136-60890155 Msa0339640:five_prime_UTR 30.0%
AGAAAATAGAGAAAAAGCAG+AGG + chr2_4:60887974-60887993 None:intergenic 30.0%
!!! TTTGCCTTTTTTGTGTGTTT+AGG - chr2_4:60888329-60888348 Msa0339640:three_prime_UTR 30.0%
TATGGAAACTTGTATAGTCA+AGG - chr2_4:60888365-60888384 Msa0339640:three_prime_UTR 30.0%
AACTTGTATAGTCAAGGTTA+TGG - chr2_4:60888371-60888390 Msa0339640:three_prime_UTR 30.0%
!! AATTTTAAGGAACATAGGCA+TGG + chr2_4:60888609-60888628 None:intergenic 30.0%
!! TCAGCAATTTTAAGGAACAT+AGG + chr2_4:60888614-60888633 None:intergenic 30.0%
AAAAAATGTAGGGTACAAAC+CGG + chr2_4:60888670-60888689 None:intergenic 30.0%
AAACAAACACTTGATGTCAT+CGG + chr2_4:60888730-60888749 None:intergenic 30.0%
!! CAAGTGTTTGTTTGATTTTG+TGG - chr2_4:60888737-60888756 Msa0339640:CDS 30.0%
TGTGATAGATCTCAATGATA+AGG - chr2_4:60888838-60888857 Msa0339640:intron 30.0%
ATAAATTGGTAAGACCATGT+TGG - chr2_4:60888906-60888925 Msa0339640:intron 30.0%
! TTGGCAATCAAATTCAGTTT+TGG - chr2_4:60889494-60889513 Msa0339640:CDS 30.0%
!! CAATCAAATTCAGTTTTGGT+GGG - chr2_4:60889498-60889517 Msa0339640:CDS 30.0%
TTTCGTGTTTGATTGATCAA+TGG - chr2_4:60889627-60889646 Msa0339640:CDS 30.0%
! TTTTCCACCAATTGTGTTTT+TGG - chr2_4:60889713-60889732 Msa0339640:CDS 30.0%
TCAAAAAGAACACCAATCTA+TGG + chr2_4:60889751-60889770 None:intergenic 30.0%
TATAGAAATGTGTGTCAAAG+TGG - chr2_4:60889797-60889816 Msa0339640:intron 30.0%
GTGTCAAAGTGGATAATTAA+AGG - chr2_4:60889808-60889827 Msa0339640:intron 30.0%
AAAGTGGATAATTAAAGGAG+TGG - chr2_4:60889813-60889832 Msa0339640:intron 30.0%
! GAAAGGATGAAAAAAAGTGT+AGG - chr2_4:60889914-60889933 Msa0339640:CDS 30.0%
TTGTATAACTAATTAGCTGC+GGG + chr2_4:60889971-60889990 None:intergenic 30.0%
AACCCTATGAAAGTTCAAAT+TGG - chr2_4:60890051-60890070 Msa0339640:five_prime_UTR 30.0%
! TTCAATTTTACCCTTTGAGT+GGG - chr2_4:60890102-60890121 Msa0339640:five_prime_UTR 30.0%
AGCAGTATCATAATGTTTGT+TGG - chr2_4:60890136-60890155 Msa0339640:five_prime_UTR 30.0%
GAACAGAGAGAAAGAGATAT+GGG + chr2_4:60887947-60887966 None:intergenic 35.0%
ATAGAGAAAAAGCAGAGGTA+TGG + chr2_4:60887969-60887988 None:intergenic 35.0%
AAAAAATTGGACAGTTGAGG+AGG + chr2_4:60888000-60888019 None:intergenic 35.0%
TATGTCACTAACAATGTGGA+TGG - chr2_4:60888090-60888109 Msa0339640:three_prime_UTR 35.0%
TCCTCCTAAACACACAAAAA+AGG + chr2_4:60888336-60888355 None:intergenic 35.0%
!! TTCAACAATGGACTAAGTTG+TGG - chr2_4:60888425-60888444 Msa0339640:three_prime_UTR 35.0%
TTGCTGTGATGAAAATGGAA+GGG + chr2_4:60888505-60888524 None:intergenic 35.0%
GTTAGTTGCTGTGATGAAAA+TGG + chr2_4:60888510-60888529 None:intergenic 35.0%
! TCACTAGGTTGAGCAAAATT+AGG + chr2_4:60888542-60888561 None:intergenic 35.0%
! CGCGATATTCAGCAATTTTA+AGG + chr2_4:60888622-60888641 None:intergenic 35.0%
ATCCAAACATGCCTTAGATA+AGG - chr2_4:60889206-60889225 Msa0339640:intron 35.0%
GGGATTAGGTTCACAATAAA+TGG - chr2_4:60889351-60889370 Msa0339640:intron 35.0%
TATAGTGAGGACCTATGTTA+AGG - chr2_4:60889425-60889444 Msa0339640:intron 35.0%
ATAGTGAGGACCTATGTTAA+GGG - chr2_4:60889426-60889445 Msa0339640:intron 35.0%
!!! TGTTTTAGTGCCCTTAACAT+AGG + chr2_4:60889439-60889458 None:intergenic 35.0%
!! TATGTTAAGGGCACTAAAAC+AGG - chr2_4:60889438-60889457 Msa0339640:CDS 35.0%
!! ATGTTAAGGGCACTAAAACA+GGG - chr2_4:60889439-60889458 Msa0339640:CDS 35.0%
!! GCAATCAAATTCAGTTTTGG+TGG - chr2_4:60889497-60889516 Msa0339640:CDS 35.0%
TGACCAAATTGCCAATTATG+TGG + chr2_4:60889588-60889607 None:intergenic 35.0%
CAATTTGGTCAAACTTTCAC+TGG - chr2_4:60889597-60889616 Msa0339640:CDS 35.0%
CACATTATATATGACCTACG+TGG + chr2_4:60889660-60889679 None:intergenic 35.0%
!! GATTGGTGTTCTTTTTGACT+AGG - chr2_4:60889753-60889772 Msa0339640:intron 35.0%
AATGGAAAAGATTAGGGTAG+AGG - chr2_4:60889882-60889901 Msa0339640:intron 35.0%
ATTAGGGTAGAGGAGTTATT+TGG - chr2_4:60889892-60889911 Msa0339640:intron 35.0%
AAGTGTAGGAAATGTTGAAG+TGG - chr2_4:60889928-60889947 Msa0339640:CDS 35.0%
ATTGCTCTATGTATCCATTG+AGG - chr2_4:60890015-60890034 Msa0339640:CDS 35.0%
! CTTCAATTTTACCCTTTGAG+TGG - chr2_4:60890101-60890120 Msa0339640:five_prime_UTR 35.0%
! TCAATTTTACCCTTTGAGTG+GGG - chr2_4:60890103-60890122 Msa0339640:five_prime_UTR 35.0%
! TGTTTGTTGGAAGAAATGCA+AGG - chr2_4:60890149-60890168 Msa0339640:five_prime_UTR 35.0%
GAACAGAGAGAAAGAGATAT+GGG + chr2_4:60887947-60887966 None:intergenic 35.0%
ATAGAGAAAAAGCAGAGGTA+TGG + chr2_4:60887969-60887988 None:intergenic 35.0%
AAAAAATTGGACAGTTGAGG+AGG + chr2_4:60888000-60888019 None:intergenic 35.0%
TATGTCACTAACAATGTGGA+TGG - chr2_4:60888090-60888109 Msa0339640:three_prime_UTR 35.0%
TCCTCCTAAACACACAAAAA+AGG + chr2_4:60888336-60888355 None:intergenic 35.0%
!! TTCAACAATGGACTAAGTTG+TGG - chr2_4:60888425-60888444 Msa0339640:three_prime_UTR 35.0%
TTGCTGTGATGAAAATGGAA+GGG + chr2_4:60888505-60888524 None:intergenic 35.0%
GTTAGTTGCTGTGATGAAAA+TGG + chr2_4:60888510-60888529 None:intergenic 35.0%
! TCACTAGGTTGAGCAAAATT+AGG + chr2_4:60888542-60888561 None:intergenic 35.0%
! CGCGATATTCAGCAATTTTA+AGG + chr2_4:60888622-60888641 None:intergenic 35.0%
ATCCAAACATGCCTTAGATA+AGG - chr2_4:60889206-60889225 Msa0339640:intron 35.0%
GGGATTAGGTTCACAATAAA+TGG - chr2_4:60889351-60889370 Msa0339640:intron 35.0%
TATAGTGAGGACCTATGTTA+AGG - chr2_4:60889425-60889444 Msa0339640:intron 35.0%
ATAGTGAGGACCTATGTTAA+GGG - chr2_4:60889426-60889445 Msa0339640:intron 35.0%
!!! TGTTTTAGTGCCCTTAACAT+AGG + chr2_4:60889439-60889458 None:intergenic 35.0%
!! TATGTTAAGGGCACTAAAAC+AGG - chr2_4:60889438-60889457 Msa0339640:CDS 35.0%
!! ATGTTAAGGGCACTAAAACA+GGG - chr2_4:60889439-60889458 Msa0339640:CDS 35.0%
!! GCAATCAAATTCAGTTTTGG+TGG - chr2_4:60889497-60889516 Msa0339640:CDS 35.0%
TGACCAAATTGCCAATTATG+TGG + chr2_4:60889588-60889607 None:intergenic 35.0%
CAATTTGGTCAAACTTTCAC+TGG - chr2_4:60889597-60889616 Msa0339640:CDS 35.0%
CACATTATATATGACCTACG+TGG + chr2_4:60889660-60889679 None:intergenic 35.0%
!! GATTGGTGTTCTTTTTGACT+AGG - chr2_4:60889753-60889772 Msa0339640:intron 35.0%
AATGGAAAAGATTAGGGTAG+AGG - chr2_4:60889882-60889901 Msa0339640:intron 35.0%
ATTAGGGTAGAGGAGTTATT+TGG - chr2_4:60889892-60889911 Msa0339640:intron 35.0%
AAGTGTAGGAAATGTTGAAG+TGG - chr2_4:60889928-60889947 Msa0339640:CDS 35.0%
ATTGCTCTATGTATCCATTG+AGG - chr2_4:60890015-60890034 Msa0339640:CDS 35.0%
! CTTCAATTTTACCCTTTGAG+TGG - chr2_4:60890101-60890120 Msa0339640:five_prime_UTR 35.0%
! TCAATTTTACCCTTTGAGTG+GGG - chr2_4:60890103-60890122 Msa0339640:five_prime_UTR 35.0%
! TGTTTGTTGGAAGAAATGCA+AGG - chr2_4:60890149-60890168 Msa0339640:five_prime_UTR 35.0%
GGAACAGAGAGAAAGAGATA+TGG + chr2_4:60887948-60887967 None:intergenic 40.0%
AGAAATGGGTATGGTGAGTA+TGG - chr2_4:60888048-60888067 Msa0339640:three_prime_UTR 40.0%
ATGGTAAATGCTAGAATCCC+AGG - chr2_4:60888109-60888128 Msa0339640:three_prime_UTR 40.0%
AGAATCCCAGGTGTTTACAA+TGG - chr2_4:60888121-60888140 Msa0339640:three_prime_UTR 40.0%
!!! ACAGCTCATGCCACTTTTTA+CGG - chr2_4:60888157-60888176 Msa0339640:three_prime_UTR 40.0%
TTTAGTACTAGACGTACCCA+TGG + chr2_4:60888203-60888222 None:intergenic 40.0%
!!! GCCTTTTTTGTGTGTTTAGG+AGG - chr2_4:60888332-60888351 Msa0339640:three_prime_UTR 40.0%
AGCACAGCACTATTCAACAA+TGG - chr2_4:60888413-60888432 Msa0339640:three_prime_UTR 40.0%
GTTGCTGTGATGAAAATGGA+AGG + chr2_4:60888506-60888525 None:intergenic 40.0%
! CTAGGTTGAGCAAAATTAGG+AGG + chr2_4:60888539-60888558 None:intergenic 40.0%
TTTGCTCAACCTAGTGACAA+TGG - chr2_4:60888545-60888564 Msa0339640:CDS 40.0%
AAAATTGCTGAATATCGCGC+CGG - chr2_4:60888623-60888642 Msa0339640:CDS 40.0%
! AGCCTTATCTAAGGCATGTT+TGG + chr2_4:60889211-60889230 None:intergenic 40.0%
GGAACATTGCTCCACATAAT+TGG - chr2_4:60889574-60889593 Msa0339640:CDS 40.0%
GCTCCACATAATTGGCAATT+TGG - chr2_4:60889582-60889601 Msa0339640:CDS 40.0%
! CGCGCAATTTTACCATAGAT+TGG - chr2_4:60889736-60889755 Msa0339640:intron 40.0%
GGTAGAGGAGTTATTTGGAA+AGG - chr2_4:60889897-60889916 Msa0339640:CDS 40.0%
TAGGAAATGTTGAAGTGGCT+AGG - chr2_4:60889933-60889952 Msa0339640:CDS 40.0%
ATGTATCCATTGAGGTGTGT+TGG - chr2_4:60890023-60890042 Msa0339640:CDS 40.0%
TAACAACCAACACACCTCAA+TGG + chr2_4:60890032-60890051 None:intergenic 40.0%
GGAACAGAGAGAAAGAGATA+TGG + chr2_4:60887948-60887967 None:intergenic 40.0%
AGAAATGGGTATGGTGAGTA+TGG - chr2_4:60888048-60888067 Msa0339640:three_prime_UTR 40.0%
ATGGTAAATGCTAGAATCCC+AGG - chr2_4:60888109-60888128 Msa0339640:three_prime_UTR 40.0%
AGAATCCCAGGTGTTTACAA+TGG - chr2_4:60888121-60888140 Msa0339640:three_prime_UTR 40.0%
!!! ACAGCTCATGCCACTTTTTA+CGG - chr2_4:60888157-60888176 Msa0339640:three_prime_UTR 40.0%
TTTAGTACTAGACGTACCCA+TGG + chr2_4:60888203-60888222 None:intergenic 40.0%
!!! GCCTTTTTTGTGTGTTTAGG+AGG - chr2_4:60888332-60888351 Msa0339640:three_prime_UTR 40.0%
AGCACAGCACTATTCAACAA+TGG - chr2_4:60888413-60888432 Msa0339640:three_prime_UTR 40.0%
GTTGCTGTGATGAAAATGGA+AGG + chr2_4:60888506-60888525 None:intergenic 40.0%
! CTAGGTTGAGCAAAATTAGG+AGG + chr2_4:60888539-60888558 None:intergenic 40.0%
TTTGCTCAACCTAGTGACAA+TGG - chr2_4:60888545-60888564 Msa0339640:CDS 40.0%
AAAATTGCTGAATATCGCGC+CGG - chr2_4:60888623-60888642 Msa0339640:CDS 40.0%
! AGCCTTATCTAAGGCATGTT+TGG + chr2_4:60889211-60889230 None:intergenic 40.0%
GGAACATTGCTCCACATAAT+TGG - chr2_4:60889574-60889593 Msa0339640:CDS 40.0%
GCTCCACATAATTGGCAATT+TGG - chr2_4:60889582-60889601 Msa0339640:CDS 40.0%
! CGCGCAATTTTACCATAGAT+TGG - chr2_4:60889736-60889755 Msa0339640:intron 40.0%
GGTAGAGGAGTTATTTGGAA+AGG - chr2_4:60889897-60889916 Msa0339640:CDS 40.0%
TAGGAAATGTTGAAGTGGCT+AGG - chr2_4:60889933-60889952 Msa0339640:CDS 40.0%
ATGTATCCATTGAGGTGTGT+TGG - chr2_4:60890023-60890042 Msa0339640:CDS 40.0%
TAACAACCAACACACCTCAA+TGG + chr2_4:60890032-60890051 None:intergenic 40.0%
CAGAGAGAAAGAGATATGGG+TGG + chr2_4:60887944-60887963 None:intergenic 45.0%
ATCCCAGGTGTTTACAATGG+TGG - chr2_4:60888124-60888143 Msa0339640:three_prime_UTR 45.0%
CACCACCATTGTAAACACCT+GGG + chr2_4:60888129-60888148 None:intergenic 45.0%
! GTGTTTACAATGGTGGTGCA+TGG - chr2_4:60888131-60888150 Msa0339640:three_prime_UTR 45.0%
ATCGGAACCTCCGTAAAAAG+TGG + chr2_4:60888170-60888189 None:intergenic 45.0%
! TTAGGAGGAGCATGTGGATA+TGG - chr2_4:60888347-60888366 Msa0339640:three_prime_UTR 45.0%
AGTGTGCAAATGACAAGCAG+TGG - chr2_4:60888465-60888484 Msa0339640:CDS 45.0%
AACCTAGTGACAATGGTGGT+TGG - chr2_4:60888552-60888571 Msa0339640:CDS 45.0%
!! TTAAGGGCACTAAAACAGGG+TGG - chr2_4:60889442-60889461 Msa0339640:CDS 45.0%
GATGCCAATGAGCAGAAACT+GGG - chr2_4:60889464-60889483 Msa0339640:CDS 45.0%
ATGCCAATGAGCAGAAACTG+GGG - chr2_4:60889465-60889484 Msa0339640:CDS 45.0%
GCTTTGTCCTTCAGAGTTAC+CGG - chr2_4:60889525-60889544 Msa0339640:CDS 45.0%
TGGAGCAATGTTCCAAGAAG+TGG + chr2_4:60889568-60889587 None:intergenic 45.0%
TCAATGGTTACTTGCCACGT+AGG - chr2_4:60889643-60889662 Msa0339640:CDS 45.0%
TTGCGCGCCAAAAACACAAT+TGG + chr2_4:60889723-60889742 None:intergenic 45.0%
GTACTACATCCCCACTCAAA+GGG + chr2_4:60890115-60890134 None:intergenic 45.0%
TGTACTACATCCCCACTCAA+AGG + chr2_4:60890116-60890135 None:intergenic 45.0%
CAGAGAGAAAGAGATATGGG+TGG + chr2_4:60887944-60887963 None:intergenic 45.0%
ATCCCAGGTGTTTACAATGG+TGG - chr2_4:60888124-60888143 Msa0339640:three_prime_UTR 45.0%
CACCACCATTGTAAACACCT+GGG + chr2_4:60888129-60888148 None:intergenic 45.0%
! GTGTTTACAATGGTGGTGCA+TGG - chr2_4:60888131-60888150 Msa0339640:three_prime_UTR 45.0%
ATCGGAACCTCCGTAAAAAG+TGG + chr2_4:60888170-60888189 None:intergenic 45.0%
! TTAGGAGGAGCATGTGGATA+TGG - chr2_4:60888347-60888366 Msa0339640:three_prime_UTR 45.0%
AGTGTGCAAATGACAAGCAG+TGG - chr2_4:60888465-60888484 Msa0339640:CDS 45.0%
AACCTAGTGACAATGGTGGT+TGG - chr2_4:60888552-60888571 Msa0339640:CDS 45.0%
!! TTAAGGGCACTAAAACAGGG+TGG - chr2_4:60889442-60889461 Msa0339640:CDS 45.0%
GATGCCAATGAGCAGAAACT+GGG - chr2_4:60889464-60889483 Msa0339640:CDS 45.0%
ATGCCAATGAGCAGAAACTG+GGG - chr2_4:60889465-60889484 Msa0339640:CDS 45.0%
GCTTTGTCCTTCAGAGTTAC+CGG - chr2_4:60889525-60889544 Msa0339640:CDS 45.0%
TGGAGCAATGTTCCAAGAAG+TGG + chr2_4:60889568-60889587 None:intergenic 45.0%
TCAATGGTTACTTGCCACGT+AGG - chr2_4:60889643-60889662 Msa0339640:CDS 45.0%
TTGCGCGCCAAAAACACAAT+TGG + chr2_4:60889723-60889742 None:intergenic 45.0%
GTACTACATCCCCACTCAAA+GGG + chr2_4:60890115-60890134 None:intergenic 45.0%
TGTACTACATCCCCACTCAA+AGG + chr2_4:60890116-60890135 None:intergenic 45.0%
AGAGATATGGGTGGAACGAG+TGG + chr2_4:60887935-60887954 None:intergenic 50.0%
GCACCACCATTGTAAACACC+TGG + chr2_4:60888130-60888149 None:intergenic 50.0%
!!! GCTCATGCCACTTTTTACGG+AGG - chr2_4:60888160-60888179 Msa0339640:three_prime_UTR 50.0%
! GTGTGTTTAGGAGGAGCATG+TGG - chr2_4:60888341-60888360 Msa0339640:three_prime_UTR 50.0%
!! GACAAGCAGTGGTGTCATTC+TGG - chr2_4:60888476-60888495 Msa0339640:CDS 50.0%
GCTCAACCTAGTGACAATGG+TGG - chr2_4:60888548-60888567 Msa0339640:CDS 50.0%
CACCAACCACCATTGTCACT+AGG + chr2_4:60888557-60888576 None:intergenic 50.0%
GATCAAAGTGAGGACGAGGA+GGG + chr2_4:60888583-60888602 None:intergenic 50.0%
AGATCAAAGTGAGGACGAGG+AGG + chr2_4:60888584-60888603 None:intergenic 50.0%
GCAAGATCAAAGTGAGGACG+AGG + chr2_4:60888587-60888606 None:intergenic 50.0%
GGCATGGCAAGATCAAAGTG+AGG + chr2_4:60888593-60888612 None:intergenic 50.0%
! GATTATGCAGGGTGCCATGT+AGG - chr2_4:60889319-60889338 Msa0339640:intron 50.0%
GTCCTAATCAGCAACGTTGC+AGG - chr2_4:60889393-60889412 Msa0339640:intron 50.0%
! CACCTGCAACGTTGCTGATT+AGG + chr2_4:60889398-60889417 None:intergenic 50.0%
GGATGCCAATGAGCAGAAAC+TGG - chr2_4:60889463-60889482 Msa0339640:CDS 50.0%
TGCCAATGAGCAGAAACTGG+GGG - chr2_4:60889466-60889485 Msa0339640:CDS 50.0%
GCAGAAACTGGGGGCAAAAT+TGG - chr2_4:60889475-60889494 Msa0339640:CDS 50.0%
GTCACTACCGGTAACTCTGA+AGG + chr2_4:60889535-60889554 None:intergenic 50.0%
! TCCAAGAAGTGGAAGTGCGA+CGG + chr2_4:60889557-60889576 None:intergenic 50.0%
CGCGCCAAAAACACAATTGG+TGG + chr2_4:60889720-60889739 None:intergenic 50.0%
AGAGATATGGGTGGAACGAG+TGG + chr2_4:60887935-60887954 None:intergenic 50.0%
GCACCACCATTGTAAACACC+TGG + chr2_4:60888130-60888149 None:intergenic 50.0%
!!! GCTCATGCCACTTTTTACGG+AGG - chr2_4:60888160-60888179 Msa0339640:three_prime_UTR 50.0%
! GTGTGTTTAGGAGGAGCATG+TGG - chr2_4:60888341-60888360 Msa0339640:three_prime_UTR 50.0%
!! GACAAGCAGTGGTGTCATTC+TGG - chr2_4:60888476-60888495 Msa0339640:CDS 50.0%
GCTCAACCTAGTGACAATGG+TGG - chr2_4:60888548-60888567 Msa0339640:CDS 50.0%
CACCAACCACCATTGTCACT+AGG + chr2_4:60888557-60888576 None:intergenic 50.0%
GATCAAAGTGAGGACGAGGA+GGG + chr2_4:60888583-60888602 None:intergenic 50.0%
AGATCAAAGTGAGGACGAGG+AGG + chr2_4:60888584-60888603 None:intergenic 50.0%
GCAAGATCAAAGTGAGGACG+AGG + chr2_4:60888587-60888606 None:intergenic 50.0%
GGCATGGCAAGATCAAAGTG+AGG + chr2_4:60888593-60888612 None:intergenic 50.0%
! GATTATGCAGGGTGCCATGT+AGG - chr2_4:60889319-60889338 Msa0339640:intron 50.0%
GTCCTAATCAGCAACGTTGC+AGG - chr2_4:60889393-60889412 Msa0339640:intron 50.0%
! CACCTGCAACGTTGCTGATT+AGG + chr2_4:60889398-60889417 None:intergenic 50.0%
GGATGCCAATGAGCAGAAAC+TGG - chr2_4:60889463-60889482 Msa0339640:CDS 50.0%
TGCCAATGAGCAGAAACTGG+GGG - chr2_4:60889466-60889485 Msa0339640:CDS 50.0%
GCAGAAACTGGGGGCAAAAT+TGG - chr2_4:60889475-60889494 Msa0339640:CDS 50.0%
GTCACTACCGGTAACTCTGA+AGG + chr2_4:60889535-60889554 None:intergenic 50.0%
! TCCAAGAAGTGGAAGTGCGA+CGG + chr2_4:60889557-60889576 None:intergenic 50.0%
CGCGCCAAAAACACAATTGG+TGG + chr2_4:60889720-60889739 None:intergenic 50.0%
TACGGAGGTTCCGATGCTTC+CGG - chr2_4:60888175-60888194 Msa0339640:three_prime_UTR 55.0%
ACTAGACGTACCCATGGTGC+CGG + chr2_4:60888197-60888216 None:intergenic 55.0%
AAAGGCGACAGGGACGATTC+CGG + chr2_4:60888645-60888664 None:intergenic 55.0%
GTAGGGTACAAACCGGCGAA+AGG + chr2_4:60888663-60888682 None:intergenic 55.0%
! TGCCATGTAGGAAGCGTGGT+GGG - chr2_4:60889331-60889350 Msa0339640:intron 55.0%
ATCCCACCACGCTTCCTACA+TGG + chr2_4:60889336-60889355 None:intergenic 55.0%
! GTAGGAAGCGTGGTGGGATT+AGG - chr2_4:60889337-60889356 Msa0339640:intron 55.0%
ATCAGCAACGTTGCAGGTGC+AGG - chr2_4:60889399-60889418 Msa0339640:intron 55.0%
TCAGCAACGTTGCAGGTGCA+GGG - chr2_4:60889400-60889419 Msa0339640:intron 55.0%
CAGGTGCAGGGGATATAGTG+AGG - chr2_4:60889412-60889431 Msa0339640:intron 55.0%
TGCCCCCAGTTTCTGCTCAT+TGG + chr2_4:60889471-60889490 None:intergenic 55.0%
ACCGTCGCACTTCCACTTCT+TGG - chr2_4:60889553-60889572 Msa0339640:CDS 55.0%
TACGGAGGTTCCGATGCTTC+CGG - chr2_4:60888175-60888194 Msa0339640:three_prime_UTR 55.0%
ACTAGACGTACCCATGGTGC+CGG + chr2_4:60888197-60888216 None:intergenic 55.0%
AAAGGCGACAGGGACGATTC+CGG + chr2_4:60888645-60888664 None:intergenic 55.0%
GTAGGGTACAAACCGGCGAA+AGG + chr2_4:60888663-60888682 None:intergenic 55.0%
! TGCCATGTAGGAAGCGTGGT+GGG - chr2_4:60889331-60889350 Msa0339640:intron 55.0%
ATCCCACCACGCTTCCTACA+TGG + chr2_4:60889336-60889355 None:intergenic 55.0%
! GTAGGAAGCGTGGTGGGATT+AGG - chr2_4:60889337-60889356 Msa0339640:intron 55.0%
ATCAGCAACGTTGCAGGTGC+AGG - chr2_4:60889399-60889418 Msa0339640:intron 55.0%
TCAGCAACGTTGCAGGTGCA+GGG - chr2_4:60889400-60889419 Msa0339640:intron 55.0%
CAGGTGCAGGGGATATAGTG+AGG - chr2_4:60889412-60889431 Msa0339640:intron 55.0%
TGCCCCCAGTTTCTGCTCAT+TGG + chr2_4:60889471-60889490 None:intergenic 55.0%
ACCGTCGCACTTCCACTTCT+TGG - chr2_4:60889553-60889572 Msa0339640:CDS 55.0%
TTCCGATGCTTCCGGCACCA+TGG - chr2_4:60888183-60888202 Msa0339640:three_prime_UTR 60.0%
TCCGATGCTTCCGGCACCAT+GGG - chr2_4:60888184-60888203 Msa0339640:three_prime_UTR 60.0%
! ACCCATGGTGCCGGAAGCAT+CGG + chr2_4:60888188-60888207 None:intergenic 60.0%
CAAACCGGCGAAAGGCGACA+GGG + chr2_4:60888655-60888674 None:intergenic 60.0%
ACAAACCGGCGAAAGGCGAC+AGG + chr2_4:60888656-60888675 None:intergenic 60.0%
! AGGGTGCCATGTAGGAAGCG+TGG - chr2_4:60889327-60889346 Msa0339640:intron 60.0%
! GTGCCATGTAGGAAGCGTGG+TGG - chr2_4:60889330-60889349 Msa0339640:intron 60.0%
CAGCAACGTTGCAGGTGCAG+GGG - chr2_4:60889401-60889420 Msa0339640:intron 60.0%
! GGAAGTGCGACGGTCACTAC+CGG + chr2_4:60889547-60889566 None:intergenic 60.0%
TTCCGATGCTTCCGGCACCA+TGG - chr2_4:60888183-60888202 Msa0339640:three_prime_UTR 60.0%
TCCGATGCTTCCGGCACCAT+GGG - chr2_4:60888184-60888203 Msa0339640:three_prime_UTR 60.0%
! ACCCATGGTGCCGGAAGCAT+CGG + chr2_4:60888188-60888207 None:intergenic 60.0%
CAAACCGGCGAAAGGCGACA+GGG + chr2_4:60888655-60888674 None:intergenic 60.0%
ACAAACCGGCGAAAGGCGAC+AGG + chr2_4:60888656-60888675 None:intergenic 60.0%
! AGGGTGCCATGTAGGAAGCG+TGG - chr2_4:60889327-60889346 Msa0339640:intron 60.0%
! GTGCCATGTAGGAAGCGTGG+TGG - chr2_4:60889330-60889349 Msa0339640:intron 60.0%
CAGCAACGTTGCAGGTGCAG+GGG - chr2_4:60889401-60889420 Msa0339640:intron 60.0%
! GGAAGTGCGACGGTCACTAC+CGG + chr2_4:60889547-60889566 None:intergenic 60.0%
TCGTCCCTGTCGCCTTTCGC+CGG - chr2_4:60888648-60888667 Msa0339640:CDS 65.0%
TCGTCCCTGTCGCCTTTCGC+CGG - chr2_4:60888648-60888667 Msa0339640:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 60887922 60890176 60887922 ID=Msa0339640;Name=Msa0339640
chr2_4 mRNA 60887922 60890176 60887922 ID=Msa0339640-mRNA-1;Parent=Msa0339640;Name=Msa0339640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=130|1|1|1|1|1|3|538|260
chr2_4 exon 60887922 60888769 60887922 ID=Msa0339640-mRNA-1:exon:19000;Parent=Msa0339640-mRNA-1
chr2_4 exon 60889429 60889747 60889429 ID=Msa0339640-mRNA-1:exon:18999;Parent=Msa0339640-mRNA-1
chr2_4 exon 60889893 60890176 60889893 ID=Msa0339640-mRNA-1:exon:18998;Parent=Msa0339640-mRNA-1
chr2_4 five_prime_UTR 60890047 60890176 60890047 ID=Msa0339640-mRNA-1:five_prime_utr;Parent=Msa0339640-mRNA-1
chr2_4 CDS 60889893 60890046 60889893 ID=Msa0339640-mRNA-1:cds;Parent=Msa0339640-mRNA-1
chr2_4 CDS 60889429 60889747 60889429 ID=Msa0339640-mRNA-1:cds;Parent=Msa0339640-mRNA-1
chr2_4 CDS 60888460 60888769 60888460 ID=Msa0339640-mRNA-1:cds;Parent=Msa0339640-mRNA-1
chr2_4 three_prime_UTR 60887922 60888459 60887922 ID=Msa0339640-mRNA-1:three_prime_utr;Parent=Msa0339640-mRNA-1
Gene Sequence

>Msa0339640

ATGGGTATGGTGAGTATGGTTTACATTGTGACTCTTATTATGTCACTAACAATGTGGATGGTAAATGCTAGAATCCCAGGTGTTTACAATGGTGGTGCATGGCAAACAGCTCATGCCACTTTTTACGGAGGTTCCGATGCTTCCGGCACCATGGGAGGAGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGAGTTAACACAGCAGCATTAAGCACAGCACTATTCAACAATGGACTAAGTTGTGGTTCTTGTTTTGAATTGAAGTGTGCAAATGACAAGCAGTGGTGTCATTCTGGTAGCCCTTCCATTTTCATCACAGCAACTAACTTTTGTCCTCCTAATTTTGCTCAACCTAGTGACAATGGTGGTTGGTGTAACCCTCCTCGTCCTCACTTTGATCTTGCCATGCCTATGTTCCTTAAAATTGCTGAATATCGCGCCGGAATCGTCCCTGTCGCCTTTCGCCGGGTGCCATGTAGGAAGCGTGGTGGGATTAGGTTCACAATAAATGGATTCCGTTACTTTAACTTAGTCCTAATCAGCAACGTTGCAGGTGCAGGGGATATAGTGAGGACCTATGTTAAGGGCACTAAAACAGGGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCAAATTCAGTTTTGGTGGGTCAAGCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCTCCACATAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTTCGTGTTTGA
Protein sequence

>Msa0339640

MGMVSMVYIVTLIMSLTMWMVNARIPGVYNGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCANDKQWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTKTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNIAPHNWQFGQTFTGKNFRV*