AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0639370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639370 MtrunA17_Chr4g0028601 100.000 587 0 0 1 587 1 587 0.0 1158
Msa0639370 MtrunA17_Chr4g0043731 64.991 537 185 1 42 575 34 570 0.0 701
Msa0639370 MtrunA17_Chr1g0152141 52.952 542 250 4 45 582 43 583 0.0 542
Msa0639370 MtrunA17_Chr1g0152151 52.768 542 251 4 45 582 43 583 0.0 541
Msa0639370 MtrunA17_Chr1g0196761 45.341 558 293 5 28 582 19 567 2.07e-159 468
Msa0639370 MtrunA17_Chr1g0196751 45.422 557 293 5 22 572 6 557 2.19e-156 460
Msa0639370 MtrunA17_Chr5g0421251 47.046 474 247 3 46 516 34 506 1.19e-149 441
Msa0639370 MtrunA17_Chr8g0342341 42.938 531 295 4 50 574 36 564 2.03e-141 422
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639370 AT2G28000.1 86.151 556 76 1 33 587 31 586 0.0 935
Msa0639370 AT5G18820.1 60.279 574 213 5 15 583 5 568 0.0 653
Msa0639370 AT5G56500.2 51.448 587 277 6 1 580 1 586 0.0 548
Msa0639370 AT5G56500.1 51.448 587 277 6 1 580 1 586 0.0 548
Msa0639370 AT5G18820.2 61.159 466 172 3 122 583 2 462 0.0 545
Msa0639370 AT1G55490.5 52.407 540 252 4 47 582 54 592 0.0 540
Msa0639370 AT1G55490.1 52.407 540 252 4 47 582 54 592 0.0 540
Msa0639370 AT1G55490.3 52.407 540 252 4 47 582 54 592 0.0 540
Msa0639370 AT1G55490.4 52.407 540 252 4 47 582 54 592 0.0 540
Msa0639370 AT1G55490.2 52.407 540 252 4 47 582 54 592 0.0 540
Msa0639370 AT3G13470.1 50.903 554 267 4 33 582 36 588 0.0 536
Msa0639370 AT1G26230.1 45.167 538 286 5 45 574 36 572 4.05e-161 474
Msa0639370 AT5G18820.3 59.806 413 160 2 15 426 5 412 2.70e-159 463
Msa0639370 AT1G26230.4 45.472 519 276 4 62 574 3 520 6.60e-157 461
Msa0639370 AT3G23990.1 44.523 566 301 6 12 573 1 557 5.23e-155 457
Msa0639370 AT1G26230.3 45.508 512 272 4 69 574 2 512 6.54e-155 456
Msa0639370 AT2G33210.1 43.696 579 301 5 4 578 6 563 1.07e-154 456
Msa0639370 AT2G33210.2 45.794 535 277 5 48 578 33 558 7.22e-152 449
Msa0639370 AT3G13860.1 43.916 526 291 3 48 571 32 555 1.99e-141 422
Msa0639370 AT1G26230.2 45.053 475 257 3 45 516 36 509 2.73e-141 421
Msa0639370 AT1G26230.5 44.226 407 223 3 45 448 36 441 2.99e-117 356

Find 186 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAGATTTGTAACAAAT+TGG 0.150058 4_3:-35089807 None:intergenic
GGCAGCAGCCGCAGCTGCCC+TGG 0.199355 4_3:-35091559 None:intergenic
GGCAGCAAAAGTTGCATTCT+TGG 0.207810 4_3:-35090700 None:intergenic
GACTACAACGGCTTCGATTT+TGG 0.214195 4_3:+35089263 Msa0639370:CDS
GAGAAGGGAAGTGATAAATT+TGG 0.219606 4_3:+35091747 Msa0639370:three_prime_UTR
ATGCTGGTGCAGCTCTAATT+AGG 0.223973 4_3:+35089058 Msa0639370:CDS
CAACGAAGTGAAGTGGGTTT+AGG 0.237925 4_3:-35087886 None:intergenic
GAGTTCCAGGCCAGTGATTT+GGG 0.275875 4_3:+35090399 Msa0639370:CDS
CTCAAGATTTGTAACAAATT+GGG 0.277700 4_3:-35089806 None:intergenic
TGAGTTCCAGGCCAGTGATT+TGG 0.282182 4_3:+35090398 Msa0639370:CDS
CAGAATGCTGCTTCAGTGGC+TGG 0.296833 4_3:+35091492 Msa0639370:CDS
GTGAAGTGGGTTTAGGGTTT+GGG 0.299776 4_3:-35087879 None:intergenic
ACTGCTAGGTGCTGAGTTCC+AGG 0.304928 4_3:+35090386 Msa0639370:intron
AACGAAGTGAAGTGGGTTTA+GGG 0.307821 4_3:-35087885 None:intergenic
ATATCATCTCCACCTTTAAC+AGG 0.315746 4_3:-35089408 None:intergenic
TTTAGATTAATTATTGTTGT+AGG 0.319817 4_3:+35091605 Msa0639370:three_prime_UTR
TTCAATTGAACAACTTGGTT+TGG 0.329096 4_3:+35090440 Msa0639370:CDS
AGTGAAGTGGGTTTAGGGTT+TGG 0.329328 4_3:-35087880 None:intergenic
CTTTGATGGCAGCCACATTA+AGG 0.329763 4_3:-35090011 None:intergenic
GCAGCAGCCGCAGCTGCCCT+GGG 0.332027 4_3:-35091558 None:intergenic
AAAGGTGGAGATGATATAAA+AGG 0.339200 4_3:+35089414 Msa0639370:CDS
AGTTTACGACTCGGAGAAAC+TGG 0.348292 4_3:+35090578 Msa0639370:CDS
TATGAGAATTTAATTGAGTC+TGG 0.349270 4_3:+35091432 Msa0639370:CDS
GCCATCAAAGCTCCAGGATT+TGG 0.350317 4_3:+35090024 Msa0639370:CDS
TGATAAAACAGTAGCGGCTT+TGG 0.352770 4_3:+35089359 Msa0639370:CDS
AAGTTGGCTAGGCCTGTTAA+AGG 0.361241 4_3:+35089396 Msa0639370:CDS
TGAAGGGAGGAATGTTGTTT+TGG 0.363805 4_3:+35088957 Msa0639370:intron
ACCAAATCCTGGAGCTTTGA+TGG 0.365679 4_3:-35090025 None:intergenic
TTATTGTTGTAGGTTAATTA+CGG 0.375832 4_3:+35091615 Msa0639370:three_prime_UTR
CAAAGGATGAGTTGCAATCC+AGG 0.386193 4_3:+35090517 Msa0639370:CDS
GAGAGGATTGCTAAATTATC+TGG 0.395315 4_3:+35090603 Msa0639370:CDS
AGATATCACTGGTGAGGCTT+TGG 0.395603 4_3:+35089957 Msa0639370:CDS
GCCGCAGCTGCCCTGGGCTT+AGG 0.396421 4_3:-35091552 None:intergenic
AAACGAGGAGGAAGACTCTA+TGG 0.398802 4_3:-35089615 None:intergenic
TTTCTTCTCTCACCAAATCC+TGG 0.401579 4_3:-35090036 None:intergenic
TGATGCAGCATCAGCAATAA+TGG 0.409954 4_3:-35090496 None:intergenic
GATTGCAATATGTAAGTTAC+GGG 0.410899 4_3:-35091822 None:intergenic
AGAAGTGGTGAATGGGAGGT+TGG 0.412726 4_3:+35091387 Msa0639370:CDS
GCTCAAAATGCTGGAATAGA+AGG 0.412779 4_3:+35091342 Msa0639370:CDS
GCTGTTGCTTCTATTTCTGC+TGG 0.418816 4_3:+35089524 Msa0639370:intron
CTTAAACGGTAAGGCCTTGT+GGG 0.430025 4_3:-35091581 None:intergenic
TCAATATTGCAATGTCTTGA+AGG 0.436075 4_3:-35090065 None:intergenic
TGCTGGTGCAGCTCTAATTA+GGG 0.437513 4_3:+35089059 Msa0639370:CDS
GGTGGAAGAGCTTGAGAAGT+TGG 0.438321 4_3:+35089380 Msa0639370:CDS
GCTGGAAATGATGAGTTGAT+TGG 0.440283 4_3:+35089542 Msa0639370:CDS
TTTCTTCAGTTGTGCAACCC+TGG 0.441852 4_3:-35090535 None:intergenic
TGATTGCAATATGTAAGTTA+CGG 0.445088 4_3:-35091823 None:intergenic
AACAAGAAGGCCCAAATCAC+TGG 0.445601 4_3:-35090409 None:intergenic
GCTGCGGCTGCTGCCCCACA+AGG 0.449078 4_3:+35091567 Msa0639370:CDS
TACCTCGGGGTCCGAGAGTA+AGG 0.449271 4_3:-35088282 None:intergenic
GCATAGCACGGCGTGAATCT+TGG 0.451358 4_3:-35088225 None:intergenic
GGACTTCTCAGTGTGACATC+AGG 0.457635 4_3:+35089306 Msa0639370:CDS
GCGTTGGTTGAAGCCATGTT+TGG 0.459068 4_3:-35087956 None:intergenic
GAAAATTAGAAGTGGTGAAT+GGG 0.459259 4_3:+35091380 Msa0639370:CDS
GCTGAAGCAATTGGCAAGGT+TGG 0.460825 4_3:+35089575 Msa0639370:CDS
GGATGAGTTTGGCAGTCCTA+AGG 0.461802 4_3:+35088978 Msa0639370:CDS
CGAAACTCAACGAAGTGAAG+TGG 0.461915 4_3:-35087893 None:intergenic
AAAAGATATAATTCCTCTGT+TGG 0.463003 4_3:+35089891 Msa0639370:CDS
TGCTTATGTTCCAGCAATCA+AGG 0.463871 4_3:+35090773 Msa0639370:CDS
AGAACGGAGAATTGAGGTAG+AGG 0.464015 4_3:-35087984 None:intergenic
TAATTAATCTAAAACTTAAA+CGG 0.464303 4_3:-35091595 None:intergenic
AGATTCACGCCGTGCTATGC+AGG 0.464712 4_3:+35088228 Msa0639370:CDS
CATTCCTTCTTCGACTTCGA+CGG 0.464884 4_3:-35089645 None:intergenic
GCCTAAGCCCAGGGCAGCTG+CGG 0.465058 4_3:+35091551 Msa0639370:CDS
ACACCATCGTTTACAACCTT+AGG 0.465120 4_3:-35088994 None:intergenic
GCTCGGGAAATCATTAAGCT+TGG 0.465886 4_3:+35089285 Msa0639370:CDS
GCACACCTTGTTACCTTCGC+AGG 0.466595 4_3:-35091465 None:intergenic
TGCTGCTTCAGTGGCTGGGA+TGG 0.468314 4_3:+35091497 Msa0639370:CDS
TCAAGATTTGTAACAAATTG+GGG 0.473091 4_3:-35089805 None:intergenic
AGAAAATTAGAAGTGGTGAA+TGG 0.475205 4_3:+35091379 Msa0639370:CDS
AAGGAGAGGTCATCAACAAT+TGG 0.475511 4_3:+35087798 None:intergenic
CAAGACATTGCAATATTGAC+AGG 0.482708 4_3:+35090069 Msa0639370:CDS
AAGTTTACGATCCTCAAGTT+CGG 0.483262 4_3:-35090664 None:intergenic
AATAATGGTGGTAGAATCCT+TGG 0.484524 4_3:-35090481 None:intergenic
TCACGCCGTGCTATGCAGGC+TGG 0.498346 4_3:+35088232 Msa0639370:CDS
TAAAACAGTAGCGGCTTTGG+TGG 0.499019 4_3:+35089362 Msa0639370:CDS
GATGCTGTTGGCCTTACTCT+CGG 0.499566 4_3:+35088271 Msa0639370:CDS
GAAGGCCCAAATCACTGGCC+TGG 0.503715 4_3:-35090404 None:intergenic
AATAGAAGGTGAAGTAGTTG+TGG 0.504535 4_3:+35091356 Msa0639370:CDS
TGTAATTAACCCTCCCATGT+TGG 0.504603 4_3:-35088147 None:intergenic
TGGTTAGTTACCTGGTTGGT+AGG 0.506460 4_3:-35088007 None:intergenic
AGGAGCTGACATCGTTCAAA+AGG 0.507340 4_3:+35090824 Msa0639370:CDS
TTGAAGTGCTTTCAACAAGA+AGG 0.508700 4_3:-35090422 None:intergenic
ACTAATGACTCAGCTGGAGA+TGG 0.509296 4_3:+35089240 Msa0639370:CDS
AGCACTTCAATTGAACAACT+TGG 0.512887 4_3:+35090435 Msa0639370:CDS
TGAGGTAGAGGATAGAGCGT+TGG 0.515182 4_3:-35087972 None:intergenic
TCATTGATTGCTCAAAATGC+TGG 0.518366 4_3:+35091333 Msa0639370:CDS
TCTATGGATAAAACACCATC+AGG 0.519843 4_3:-35089599 None:intergenic
AGAATGCTGCTTCAGTGGCT+GGG 0.520388 4_3:+35091493 Msa0639370:CDS
ACCAATGCTGTACCTCCGCC+AGG 0.523021 4_3:-35090741 None:intergenic
ACAACCGTCGAAGTCGAAGA+AGG 0.524172 4_3:+35089641 Msa0639370:CDS
CACTTGCTTTAACCACAAAA+CGG 0.526937 4_3:-35088183 None:intergenic
CTTCGGCAATGATAAGCAAA+GGG 0.527412 4_3:-35089936 None:intergenic
TATTGAGTTACCTGATGCTA+TGG 0.527504 4_3:+35089032 Msa0639370:CDS
TCTGCAGAATGCTGCTTCAG+TGG 0.527899 4_3:+35091488 Msa0639370:CDS
AGCCTCACCAGTGATATCTT+CGG 0.529074 4_3:-35089953 None:intergenic
GAAGGTATTGTCCCTGGCGG+AGG 0.532648 4_3:+35090729 Msa0639370:CDS
AATCTAAAACTTAAACGGTA+AGG 0.533828 4_3:-35091590 None:intergenic
AATCCTGTGTCAATCAAGAA+AGG 0.534087 4_3:+35089333 Msa0639370:CDS
AGTAAAACTAATGACTCAGC+TGG 0.535745 4_3:+35089234 Msa0639370:CDS
GGATCGTAAACTTAGAATTG+AGG 0.536649 4_3:+35090674 Msa0639370:CDS
GTGGCTGCCATCAAAGCTCC+AGG 0.538427 4_3:+35090018 Msa0639370:CDS
AGCAGGAAGGCGAACCAACA+TGG 0.541019 4_3:+35088133 Msa0639370:CDS
TGGTGGAGTGGCAGTCATCA+AGG 0.542101 4_3:+35090623 Msa0639370:CDS
ATTCCTTTCTTGATTGACAC+AGG 0.542961 4_3:-35089336 None:intergenic
ACAATGATTGCTGAAGCAAT+TGG 0.546352 4_3:+35089566 Msa0639370:CDS
AGGCACAAACGAGTTTAAGC+AGG 0.547883 4_3:+35088116 Msa0639370:intron
ACTTAAACGGTAAGGCCTTG+TGG 0.553935 4_3:-35091582 None:intergenic
TTGTTGAAAAGCCTAAGCCC+AGG 0.555169 4_3:+35091541 Msa0639370:CDS
GATAAACTTGCTGATGCTGT+TGG 0.556730 4_3:+35088259 Msa0639370:CDS
ATCAACAATTGGTGAAGAGT+AGG 0.558233 4_3:+35087809 Msa0639370:five_prime_UTR
CGTCGAAGTCGAAGAAGGAA+TGG 0.560458 4_3:+35089646 Msa0639370:CDS
CCCTGGCGGAGGTACAGCAT+TGG 0.561753 4_3:+35090740 Msa0639370:CDS
GGTAGGAGAACGGAGAATTG+AGG 0.562827 4_3:-35087990 None:intergenic
TATCCACACTCTTCCAAACA+TGG 0.562860 4_3:+35087943 Msa0639370:exon
CAATTCCAGCCTGCATAGCA+CGG 0.564119 4_3:-35088237 None:intergenic
AGGATTTGGTGAGAGAAGAA+AGG 0.566687 4_3:+35090038 Msa0639370:CDS
AGGGACAATACCTTCCTCAA+TGG 0.566938 4_3:-35090721 None:intergenic
CTAATGACTCAGCTGGAGAT+GGG 0.568805 4_3:+35089241 Msa0639370:CDS
GACAGACTCAGTTTACGACT+CGG 0.569507 4_3:+35090569 Msa0639370:CDS
AACAATTGGTGAAGAGTAGG+AGG 0.572932 4_3:+35087812 Msa0639370:five_prime_UTR
ATTGAGGAAGGTATTGTCCC+TGG 0.573480 4_3:+35090723 Msa0639370:CDS
GAAGAGTGTGGATAAGATGA+TGG 0.575587 4_3:-35087934 None:intergenic
AACTAGAAGACGCAGATGAG+AGG 0.576895 4_3:+35090799 Msa0639370:CDS
TGCTAAATTATCTGGTGGAG+TGG 0.578652 4_3:+35090611 Msa0639370:CDS
TATTGCTGATGCTGCATCAA+AGG 0.580565 4_3:+35090500 Msa0639370:CDS
GCAGGAAGGCGAACCAACAT+GGG 0.584017 4_3:+35088134 Msa0639370:CDS
ATTGGCAAGGTTGGACCTGA+TGG 0.586040 4_3:+35089584 Msa0639370:CDS
CACGCAGCTTGTTCACAACA+AGG 0.586245 4_3:-35089984 None:intergenic
TCGACCCTGCGAAGGTAACA+AGG 0.586880 4_3:+35091460 Msa0639370:CDS
ATCATTGCCGAAGATATCAC+TGG 0.598076 4_3:+35089946 Msa0639370:CDS
TCTTCGGCAATGATAAGCAA+AGG 0.598336 4_3:-35089937 None:intergenic
CCTGATGCTATGGAAAATGC+TGG 0.601164 4_3:+35089042 Msa0639370:CDS
ATGACTTGTAGATTGACAGA+GGG 0.604162 4_3:+35089773 Msa0639370:intron
GGTGGTAGAATCCTTGGAGA+TGG 0.604265 4_3:-35090475 None:intergenic
TGCTACAGAGACCGAACTTG+AGG 0.605909 4_3:+35090653 Msa0639370:CDS
GAAATGGTTAGTTACCTGGT+TGG 0.606997 4_3:-35088011 None:intergenic
GTTGTGGAGAAAATTAGAAG+TGG 0.607273 4_3:+35091372 Msa0639370:CDS
ACGGCGTGAATCTTGGTCAA+AGG 0.607568 4_3:-35088218 None:intergenic
CACACCTTGTTACCTTCGCA+GGG 0.607881 4_3:-35091464 None:intergenic
AAGAGCTTGAGAAGTTGGCT+AGG 0.608935 4_3:+35089385 Msa0639370:CDS
TATTGCAATGTCTTGAAGGA+GGG 0.612191 4_3:-35090061 None:intergenic
GAAGACGCAGATGAGAGGCT+AGG 0.612286 4_3:+35090804 Msa0639370:CDS
CAAGATTTGTAACAAATTGG+GGG 0.614790 4_3:-35089804 None:intergenic
TTGGCTAGGCCTGTTAAAGG+TGG 0.615079 4_3:+35089399 Msa0639370:CDS
TCTCCGTTCTCCTACCAACC+AGG 0.616314 4_3:+35087997 Msa0639370:CDS
AGGATTGCTAAATTATCTGG+TGG 0.617517 4_3:+35090606 Msa0639370:CDS
AAAGGATGAGTTGCAATCCA+GGG 0.618406 4_3:+35090518 Msa0639370:CDS
TTACCTGGTTGGTAGGAGAA+CGG 0.618698 4_3:-35088000 None:intergenic
AATTAGAAGTGGTGAATGGG+AGG 0.619643 4_3:+35091383 Msa0639370:CDS
TGGAGTCATCGACCCTGCGA+AGG 0.619723 4_3:+35091452 Msa0639370:CDS
CAAAGGGGCTCTCAATTGAG+TGG 0.620297 4_3:-35089920 None:intergenic
TTCAACAACAATGGCCTGTG+TGG 0.620761 4_3:-35091526 None:intergenic
ATTCTCATAAGTGTCTGTCA+TGG 0.622423 4_3:-35091418 None:intergenic
TGTTGAAAAGCCTAAGCCCA+GGG 0.625995 4_3:+35091542 Msa0639370:CDS
AGATAATTTAGCAATCCTCT+CGG 0.626680 4_3:-35090601 None:intergenic
AAGATTTGTAACAAATTGGG+GGG 0.629058 4_3:-35089803 None:intergenic
GGAAGGCGAACCAACATGGG+AGG 0.631849 4_3:+35088137 Msa0639370:CDS
ATATTGCAATGTCTTGAAGG+AGG 0.635052 4_3:-35090062 None:intergenic
GAAACTCAACGAAGTGAAGT+GGG 0.636002 4_3:-35087892 None:intergenic
GGAGTGGCAGTCATCAAGGT+CGG 0.637367 4_3:+35090627 Msa0639370:CDS
TGCCGAAGATATCACTGGTG+AGG 0.639474 4_3:+35089951 Msa0639370:CDS
AAGCCATGTTTGGAAGAGTG+TGG 0.640694 4_3:-35087946 None:intergenic
TCGAAAAGTGACCATCTCCA+AGG 0.643733 4_3:+35090464 Msa0639370:CDS
CCAATGCTGTACCTCCGCCA+GGG 0.646851 4_3:-35090740 None:intergenic
TATGACTTGTAGATTGACAG+AGG 0.649175 4_3:+35089772 Msa0639370:intron
GGCCTTACTCTCGGACCCCG+AGG 0.649612 4_3:+35088280 Msa0639370:CDS
ACTCGGAGAAACTGGCCGAG+AGG 0.649780 4_3:+35090586 Msa0639370:CDS
AGGAATTGATAAAACAGTAG+CGG 0.654535 4_3:+35089353 Msa0639370:CDS
GAAGGCGAACCAACATGGGA+GGG 0.655547 4_3:+35088138 Msa0639370:CDS
ACAAACGAGTTTAAGCAGGA+AGG 0.666712 4_3:+35088120 Msa0639370:CDS
GATTGCTGAAGCAATTGGCA+AGG 0.668567 4_3:+35089571 Msa0639370:CDS
AGTCCTAAGGTTGTAAACGA+TGG 0.671771 4_3:+35088991 Msa0639370:CDS
GCTGCGTGGTATCCTTAATG+TGG 0.674392 4_3:+35089999 Msa0639370:CDS
TTAAACGGTAAGGCCTTGTG+GGG 0.676362 4_3:-35091580 None:intergenic
GACGGTTGTCTCAAACGAGG+AGG 0.683850 4_3:-35089627 None:intergenic
CGAAGTCGAAGAAGGAATGG+AGG 0.684643 4_3:+35089649 Msa0639370:CDS
AGCTGGAGATGGGACTACAA+CGG 0.691077 4_3:+35089251 Msa0639370:CDS
TGCAGCATCAGCAATAATGG+TGG 0.697793 4_3:-35090493 None:intergenic
TGGTGCAGCTCTAATTAGGG+AGG 0.702507 4_3:+35089062 Msa0639370:CDS
ACGCAGCTTGTTCACAACAA+GGG 0.703024 4_3:-35089983 None:intergenic
TGGGATGGTCTTGACCACAC+AGG 0.718657 4_3:+35091512 Msa0639370:CDS
TTCGGCAATGATAAGCAAAG+GGG 0.721019 4_3:-35089935 None:intergenic
GAGGAAGGTATTGTCCCTGG+CGG 0.743744 4_3:+35090726 Msa0639370:CDS
CTTGTTGTGAACAAGCTGCG+TGG 0.747846 4_3:+35089985 Msa0639370:CDS
TTCGACGGTTGTCTCAAACG+AGG 0.759858 4_3:-35089630 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAATCTAAAACTTAAA+CGG - chr4_3:35091598-35091617 None:intergenic 10.0%
!! ATTAAATGAAAATGAATGAA+GGG - chr4_3:35088037-35088056 None:intergenic 15.0%
!! AATTAAATGAAAATGAATGA+AGG - chr4_3:35088038-35088057 None:intergenic 15.0%
!!! TTAGTATTATTGCTATTATA+TGG + chr4_3:35088896-35088915 Msa0639370:intron 15.0%
!!! TAGTATTATTGCTATTATAT+GGG + chr4_3:35088897-35088916 Msa0639370:intron 15.0%
!!! TATTCTTTTTTTGTTTGAAT+CGG + chr4_3:35089160-35089179 Msa0639370:intron 15.0%
!!! TATATGTATTCATTGTTTTT+TGG + chr4_3:35090103-35090122 Msa0639370:intron 15.0%
!! TGTTTAATCATGTTAAATAA+TGG + chr4_3:35090186-35090205 Msa0639370:intron 15.0%
!!! AAATAATATCAACATTTTCA+GGG + chr4_3:35090966-35090985 Msa0639370:intron 15.0%
!! TTTAGATTAATTATTGTTGT+AGG + chr4_3:35091605-35091624 Msa0639370:three_prime_UTR 15.0%
!! TTAAATGAAAATGAATGAAG+GGG - chr4_3:35088036-35088055 None:intergenic 20.0%
!! TTGAATGTAATTATATGTGT+TGG + chr4_3:35088322-35088341 Msa0639370:intron 20.0%
!!! TGAATCTGAATGTATTTTTT+CGG + chr4_3:35088478-35088497 Msa0639370:intron 20.0%
!!! GTTGTTTTAATAAACTATAC+CGG + chr4_3:35088626-35088645 Msa0639370:intron 20.0%
!! TACATTTCAAAAAGATACAT+GGG - chr4_3:35088779-35088798 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTGAAGGG+AGG + chr4_3:35088944-35088963 Msa0639370:intron 20.0%
!!! TTTGAAGATTTTTGTGTATA+TGG + chr4_3:35089129-35089148 Msa0639370:intron 20.0%
!! TACTATAAGAACATTTGATT+TGG + chr4_3:35089446-35089465 Msa0639370:intron 20.0%
!!! AGGAATTATATCTTTTATTG+CGG - chr4_3:35089887-35089906 None:intergenic 20.0%
!!! CATAAACTAAATTTTTGAAC+AGG - chr4_3:35090217-35090236 None:intergenic 20.0%
!!! CAAATAATATCAACATTTTC+AGG + chr4_3:35090965-35090984 Msa0639370:intron 20.0%
!! GCTTGAAACATTAATTTATA+AGG - chr4_3:35091004-35091023 None:intergenic 20.0%
!! AAAAAGGGATGAAAAATAAA+TGG - chr4_3:35091201-35091220 None:intergenic 20.0%
!!! ATATTGATGAAGTTTTGATT+GGG - chr4_3:35091231-35091250 None:intergenic 20.0%
!! TTATTGTTGTAGGTTAATTA+CGG + chr4_3:35091615-35091634 Msa0639370:three_prime_UTR 20.0%
!!! AGATTTGTTTTAATTGATGA+GGG + chr4_3:35091725-35091744 Msa0639370:three_prime_UTR 20.0%
!! TTTTGTAGTTAAGTGCTTTT+GGG - chr4_3:35088064-35088083 None:intergenic 25.0%
!! ATTTTGTAGTTAAGTGCTTT+TGG - chr4_3:35088065-35088084 None:intergenic 25.0%
!! AATTTTCGATTATCTGTTTC+AGG + chr4_3:35088096-35088115 Msa0639370:intron 25.0%
! ACTCAAATTATCATATACCT+CGG - chr4_3:35088300-35088319 None:intergenic 25.0%
! GATTATTTACATAAACTCTC+CGG - chr4_3:35088648-35088667 None:intergenic 25.0%
! GAGAGTTTATGTAAATAATC+TGG + chr4_3:35088648-35088667 Msa0639370:intron 25.0%
! ATAAGCTCAAATAAGCTAAT+GGG + chr4_3:35088747-35088766 Msa0639370:intron 25.0%
! GTACATTTCAAAAAGATACA+TGG - chr4_3:35088780-35088799 None:intergenic 25.0%
!!! TGGATTTTTTTAGAAATGTG+AGG + chr4_3:35088813-35088832 Msa0639370:intron 25.0%
!!! ATTTTTTTAGAAATGTGAGG+TGG + chr4_3:35088816-35088835 Msa0639370:intron 25.0%
!!! TGATGTTGATTTAAAACTGA+AGG + chr4_3:35089206-35089225 Msa0639370:intron 25.0%
! TTCCAATTATAAACATTCAC+CGG - chr4_3:35089711-35089730 None:intergenic 25.0%
! AAAAGCAATAGAATTAGAAG+TGG - chr4_3:35089753-35089772 None:intergenic 25.0%
! TCAAGATTTGTAACAAATTG+GGG - chr4_3:35089808-35089827 None:intergenic 25.0%
! CTCAAGATTTGTAACAAATT+GGG - chr4_3:35089809-35089828 None:intergenic 25.0%
! TCTCAAGATTTGTAACAAAT+TGG - chr4_3:35089810-35089829 None:intergenic 25.0%
! AAAAGATATAATTCCTCTGT+TGG + chr4_3:35089891-35089910 Msa0639370:CDS 25.0%
! AAACAATAATCATAGCATAC+TGG - chr4_3:35090883-35090902 None:intergenic 25.0%
! CAGATTGTAAATTGTAATCA+TGG - chr4_3:35090918-35090937 None:intergenic 25.0%
! TTGATATTATTTGTGCTTAC+GGG - chr4_3:35090958-35090977 None:intergenic 25.0%
! GTTGATATTATTTGTGCTTA+CGG - chr4_3:35090959-35090978 None:intergenic 25.0%
!!! AAATGGATTTTCTTGAAAAC+TGG - chr4_3:35091184-35091203 None:intergenic 25.0%
! TGATTGGGGAAAAATAAAAA+GGG - chr4_3:35091216-35091235 None:intergenic 25.0%
! TTGATTGGGGAAAAATAAAA+AGG - chr4_3:35091217-35091236 None:intergenic 25.0%
!!! TATTGATGAAGTTTTGATTG+GGG - chr4_3:35091230-35091249 None:intergenic 25.0%
!!! GATATTGATGAAGTTTTGAT+TGG - chr4_3:35091232-35091251 None:intergenic 25.0%
!! TTTTCCTTTTGTCTATGTAT+AGG + chr4_3:35091293-35091312 Msa0639370:intron 25.0%
! TATGAGAATTTAATTGAGTC+TGG + chr4_3:35091432-35091451 Msa0639370:CDS 25.0%
!! AATCTAAAACTTAAACGGTA+AGG - chr4_3:35091593-35091612 None:intergenic 25.0%
!!! GAGATTTGTTTTAATTGATG+AGG + chr4_3:35091724-35091743 Msa0639370:three_prime_UTR 25.0%
TCAAATTATCATATACCTCG+GGG - chr4_3:35088298-35088317 None:intergenic 30.0%
CTCAAATTATCATATACCTC+GGG - chr4_3:35088299-35088318 None:intergenic 30.0%
TTATATGTGTTGTCTCATAC+TGG + chr4_3:35088371-35088390 Msa0639370:intron 30.0%
TGACTTTGGATTTGCATAAA+TGG + chr4_3:35088434-35088453 Msa0639370:intron 30.0%
GATAAGCTCAAATAAGCTAA+TGG + chr4_3:35088746-35088765 Msa0639370:intron 30.0%
!!! AATGTTGTTTTGGATGAGTT+TGG + chr4_3:35088967-35088986 Msa0639370:CDS 30.0%
!!! TCTTTTTTTGTTTGAATCGG+TGG + chr4_3:35089163-35089182 Msa0639370:intron 30.0%
AGGAATTGATAAAACAGTAG+CGG + chr4_3:35089353-35089372 Msa0639370:CDS 30.0%
AAAGGTGGAGATGATATAAA+AGG + chr4_3:35089414-35089433 Msa0639370:CDS 30.0%
! GGAGATGATATAAAAGGTAT+TGG + chr4_3:35089420-35089439 Msa0639370:intron 30.0%
! ATTTGACATCTTTTCTTTCC+CGG + chr4_3:35089689-35089708 Msa0639370:intron 30.0%
TCCAATTATAAACATTCACC+GGG - chr4_3:35089710-35089729 None:intergenic 30.0%
AAGATTTGTAACAAATTGGG+GGG - chr4_3:35089806-35089825 None:intergenic 30.0%
CAAGATTTGTAACAAATTGG+GGG - chr4_3:35089807-35089826 None:intergenic 30.0%
! CTTTTATTGCGGAAATCTTT+TGG - chr4_3:35089876-35089895 None:intergenic 30.0%
TCAATATTGCAATGTCTTGA+AGG - chr4_3:35090068-35090087 None:intergenic 30.0%
AAACCTACATTGTACATGAT+TGG - chr4_3:35090162-35090181 None:intergenic 30.0%
! ATTTTGTGCATTTAACTGCT+AGG + chr4_3:35090372-35090391 Msa0639370:intron 30.0%
TTCAATTGAACAACTTGGTT+TGG + chr4_3:35090440-35090459 Msa0639370:CDS 30.0%
AGATAATTTAGCAATCCTCT+CGG - chr4_3:35090604-35090623 None:intergenic 30.0%
TGATATTATTTGTGCTTACG+GGG - chr4_3:35090957-35090976 None:intergenic 30.0%
! CTCATGGAAAAGATATTTTC+AGG + chr4_3:35091033-35091052 Msa0639370:intron 30.0%
CAAACAAGGAAACAGAATAT+GGG - chr4_3:35091080-35091099 None:intergenic 30.0%
! CATATTCTGTTTCCTTGTTT+GGG + chr4_3:35091079-35091098 Msa0639370:intron 30.0%
AATGCCTATACATAGACAAA+AGG - chr4_3:35091300-35091319 None:intergenic 30.0%
! TTTTGTCTATGTATAGGCAT+TGG + chr4_3:35091299-35091318 Msa0639370:intron 30.0%
AGAAAATTAGAAGTGGTGAA+TGG + chr4_3:35091379-35091398 Msa0639370:CDS 30.0%
GAAAATTAGAAGTGGTGAAT+GGG + chr4_3:35091380-35091399 Msa0639370:CDS 30.0%
!! TTTTAATTGATGAGGGAGAA+GGG + chr4_3:35091732-35091751 Msa0639370:three_prime_UTR 30.0%
ATCAACAATTGGTGAAGAGT+AGG + chr4_3:35087809-35087828 Msa0639370:five_prime_UTR 35.0%
GAAAATGAATGAAGGGGAAA+TGG - chr4_3:35088030-35088049 None:intergenic 35.0%
! ACAGAAAGTTAACCGTTTTG+TGG + chr4_3:35088171-35088190 Msa0639370:CDS 35.0%
CACTTGCTTTAACCACAAAA+CGG - chr4_3:35088186-35088205 None:intergenic 35.0%
GAAAACATGGAATGTGACTT+TGG + chr4_3:35088420-35088439 Msa0639370:intron 35.0%
GGATAAAATGTTGACCTGTT+TGG + chr4_3:35088499-35088518 Msa0639370:intron 35.0%
AATAAGCTCTCTTTCCAAAC+AGG - chr4_3:35088516-35088535 None:intergenic 35.0%
!!! GGAAAGAGAGCTTATTTTGT+AGG + chr4_3:35088520-35088539 Msa0639370:intron 35.0%
TTCTCTCAAATAGTGTCAGA+TGG + chr4_3:35088709-35088728 Msa0639370:intron 35.0%
! AATGTACTTCTAGAAACGTG+TGG + chr4_3:35088793-35088812 Msa0639370:intron 35.0%
TATTGAGTTACCTGATGCTA+TGG + chr4_3:35089032-35089051 Msa0639370:CDS 35.0%
! TTGTTTGAATCGGTGGTTTT+TGG + chr4_3:35089170-35089189 Msa0639370:intron 35.0%
AGTAAAACTAATGACTCAGC+TGG + chr4_3:35089234-35089253 Msa0639370:CDS 35.0%
AATCCTGTGTCAATCAAGAA+AGG + chr4_3:35089333-35089352 Msa0639370:CDS 35.0%
ATTCCTTTCTTGATTGACAC+AGG - chr4_3:35089339-35089358 None:intergenic 35.0%
ATATCATCTCCACCTTTAAC+AGG - chr4_3:35089411-35089430 None:intergenic 35.0%
TAGCATGACATTACAACAAC+TGG - chr4_3:35089483-35089502 None:intergenic 35.0%
ACAATGATTGCTGAAGCAAT+TGG + chr4_3:35089566-35089585 Msa0639370:CDS 35.0%
TCTATGGATAAAACACCATC+AGG - chr4_3:35089602-35089621 None:intergenic 35.0%
TCCCGGTGAATGTTTATAAT+TGG + chr4_3:35089706-35089725 Msa0639370:intron 35.0%
! TATGACTTGTAGATTGACAG+AGG + chr4_3:35089772-35089791 Msa0639370:intron 35.0%
! ATGACTTGTAGATTGACAGA+GGG + chr4_3:35089773-35089792 Msa0639370:intron 35.0%
! TATTGCGGAAATCTTTTGGT+CGG - chr4_3:35089872-35089891 None:intergenic 35.0%
TATTGCAATGTCTTGAAGGA+GGG - chr4_3:35090064-35090083 None:intergenic 35.0%
ATATTGCAATGTCTTGAAGG+AGG - chr4_3:35090065-35090084 None:intergenic 35.0%
CAAGACATTGCAATATTGAC+AGG + chr4_3:35090069-35090088 Msa0639370:CDS 35.0%
TGTCCAATCATGTACAATGT+AGG + chr4_3:35090156-35090175 Msa0639370:intron 35.0%
! ATCGGTTCTTTGTTGTATCA+TGG - chr4_3:35090305-35090324 None:intergenic 35.0%
AACTTGTGTTTCCTTGTCAT+CGG - chr4_3:35090323-35090342 None:intergenic 35.0%
! TTGAAGTGCTTTCAACAAGA+AGG - chr4_3:35090425-35090444 None:intergenic 35.0%
AGCACTTCAATTGAACAACT+TGG + chr4_3:35090435-35090454 Msa0639370:CDS 35.0%
AATAATGGTGGTAGAATCCT+TGG - chr4_3:35090484-35090503 None:intergenic 35.0%
GAGAGGATTGCTAAATTATC+TGG + chr4_3:35090603-35090622 Msa0639370:CDS 35.0%
AGGATTGCTAAATTATCTGG+TGG + chr4_3:35090606-35090625 Msa0639370:CDS 35.0%
AAGTTTACGATCCTCAAGTT+CGG - chr4_3:35090667-35090686 None:intergenic 35.0%
GGATCGTAAACTTAGAATTG+AGG + chr4_3:35090674-35090693 Msa0639370:CDS 35.0%
!!! TCTAGTTTTTCCTTGATTGC+TGG - chr4_3:35090786-35090805 None:intergenic 35.0%
!! TCAACATTTTCAGGGTAATC+TGG + chr4_3:35090974-35090993 Msa0639370:intron 35.0%
TTCAAGCGTCATATAACTCA+TGG + chr4_3:35091017-35091036 Msa0639370:intron 35.0%
CCAAACAAGGAAACAGAATA+TGG - chr4_3:35091081-35091100 None:intergenic 35.0%
CCATATTCTGTTTCCTTGTT+TGG + chr4_3:35091078-35091097 Msa0639370:intron 35.0%
ACACTCATAATAGCACAACA+AGG - chr4_3:35091136-35091155 None:intergenic 35.0%
! TTTTGAGCAATCAATGATGC+AGG - chr4_3:35091330-35091349 None:intergenic 35.0%
! TCATTGATTGCTCAAAATGC+TGG + chr4_3:35091333-35091352 Msa0639370:CDS 35.0%
AATAGAAGGTGAAGTAGTTG+TGG + chr4_3:35091356-35091375 Msa0639370:CDS 35.0%
GTTGTGGAGAAAATTAGAAG+TGG + chr4_3:35091372-35091391 Msa0639370:CDS 35.0%
ATTCTCATAAGTGTCTGTCA+TGG - chr4_3:35091421-35091440 None:intergenic 35.0%
! CTTAGGCTTTTCAACAACAA+TGG - chr4_3:35091538-35091557 None:intergenic 35.0%
! AGTGAAAGAGCTTGTGTTTT+CGG + chr4_3:35091658-35091677 Msa0639370:three_prime_UTR 35.0%
!!! GTTTTAATTGATGAGGGAGA+AGG + chr4_3:35091731-35091750 Msa0639370:three_prime_UTR 35.0%
GAGAAGGGAAGTGATAAATT+TGG + chr4_3:35091747-35091766 Msa0639370:three_prime_UTR 35.0%
AACAATTGGTGAAGAGTAGG+AGG + chr4_3:35087812-35087831 Msa0639370:five_prime_UTR 40.0%
! AACGAAGTGAAGTGGGTTTA+GGG - chr4_3:35087888-35087907 None:intergenic 40.0%
GAAACTCAACGAAGTGAAGT+GGG - chr4_3:35087895-35087914 None:intergenic 40.0%
! GAAGAGTGTGGATAAGATGA+TGG - chr4_3:35087937-35087956 None:intergenic 40.0%
TATCCACACTCTTCCAAACA+TGG + chr4_3:35087943-35087962 Msa0639370:exon 40.0%
! GAAATGGTTAGTTACCTGGT+TGG - chr4_3:35088014-35088033 None:intergenic 40.0%
ACAAACGAGTTTAAGCAGGA+AGG + chr4_3:35088120-35088139 Msa0639370:CDS 40.0%
TGTAATTAACCCTCCCATGT+TGG - chr4_3:35088150-35088169 None:intergenic 40.0%
!! GATAAACTTGCTGATGCTGT+TGG + chr4_3:35088259-35088278 Msa0639370:CDS 40.0%
CTGATGCGTTAGTGAAAACA+TGG + chr4_3:35088407-35088426 Msa0639370:intron 40.0%
!! TGAAGGGAGGAATGTTGTTT+TGG + chr4_3:35088957-35088976 Msa0639370:intron 40.0%
AGTCCTAAGGTTGTAAACGA+TGG + chr4_3:35088991-35089010 Msa0639370:CDS 40.0%
ACACCATCGTTTACAACCTT+AGG - chr4_3:35088997-35089016 None:intergenic 40.0%
TGATAAAACAGTAGCGGCTT+TGG + chr4_3:35089359-35089378 Msa0639370:CDS 40.0%
!! GCTGGAAATGATGAGTTGAT+TGG + chr4_3:35089542-35089561 Msa0639370:CDS 40.0%
TTCGGCAATGATAAGCAAAG+GGG - chr4_3:35089938-35089957 None:intergenic 40.0%
CTTCGGCAATGATAAGCAAA+GGG - chr4_3:35089939-35089958 None:intergenic 40.0%
TCTTCGGCAATGATAAGCAA+AGG - chr4_3:35089940-35089959 None:intergenic 40.0%
ATCATTGCCGAAGATATCAC+TGG + chr4_3:35089946-35089965 Msa0639370:CDS 40.0%
TTTCTTCTCTCACCAAATCC+TGG - chr4_3:35090039-35090058 None:intergenic 40.0%
!! AGGATTTGGTGAGAGAAGAA+AGG + chr4_3:35090038-35090057 Msa0639370:CDS 40.0%
ACAACAAAGAACCGATGACA+AGG + chr4_3:35090309-35090328 Msa0639370:intron 40.0%
TGACAAGGAAACACAAGTTG+TGG + chr4_3:35090324-35090343 Msa0639370:intron 40.0%
TGATGCAGCATCAGCAATAA+TGG - chr4_3:35090499-35090518 None:intergenic 40.0%
TATTGCTGATGCTGCATCAA+AGG + chr4_3:35090500-35090519 Msa0639370:CDS 40.0%
AAAGGATGAGTTGCAATCCA+GGG + chr4_3:35090518-35090537 Msa0639370:CDS 40.0%
TGCTAAATTATCTGGTGGAG+TGG + chr4_3:35090611-35090630 Msa0639370:CDS 40.0%
TGCTTATGTTCCAGCAATCA+AGG + chr4_3:35090773-35090792 Msa0639370:CDS 40.0%
! TCTGTTTCCTTGTTTGGGTA+AGG + chr4_3:35091084-35091103 Msa0639370:intron 40.0%
! CTGTTTCCTTGTTTGGGTAA+GGG + chr4_3:35091085-35091104 Msa0639370:intron 40.0%
! TGTTTCCTTGTTTGGGTAAG+GGG + chr4_3:35091086-35091105 Msa0639370:intron 40.0%
GCTCAAAATGCTGGAATAGA+AGG + chr4_3:35091342-35091361 Msa0639370:CDS 40.0%
AATTAGAAGTGGTGAATGGG+AGG + chr4_3:35091383-35091402 Msa0639370:CDS 40.0%
! GTGAAGTGGGTTTAGGGTTT+GGG - chr4_3:35087882-35087901 None:intergenic 45.0%
! AGTGAAGTGGGTTTAGGGTT+TGG - chr4_3:35087883-35087902 None:intergenic 45.0%
! CAACGAAGTGAAGTGGGTTT+AGG - chr4_3:35087889-35087908 None:intergenic 45.0%
CGAAACTCAACGAAGTGAAG+TGG - chr4_3:35087896-35087915 None:intergenic 45.0%
AAGCCATGTTTGGAAGAGTG+TGG - chr4_3:35087949-35087968 None:intergenic 45.0%
AGAACGGAGAATTGAGGTAG+AGG - chr4_3:35087987-35088006 None:intergenic 45.0%
!! TTACCTGGTTGGTAGGAGAA+CGG - chr4_3:35088003-35088022 None:intergenic 45.0%
! TGGTTAGTTACCTGGTTGGT+AGG - chr4_3:35088010-35088029 None:intergenic 45.0%
! AGGGGAAATGGTTAGTTACC+TGG - chr4_3:35088018-35088037 None:intergenic 45.0%
AGGCACAAACGAGTTTAAGC+AGG + chr4_3:35088116-35088135 Msa0639370:intron 45.0%
! GTGTCAGATGGTGTTTCTGT+CGG + chr4_3:35088721-35088740 Msa0639370:intron 45.0%
! CCAGCATTTTCCATAGCATC+AGG - chr4_3:35089045-35089064 None:intergenic 45.0%
CCTGATGCTATGGAAAATGC+TGG + chr4_3:35089042-35089061 Msa0639370:CDS 45.0%
! ATGCTGGTGCAGCTCTAATT+AGG + chr4_3:35089058-35089077 Msa0639370:CDS 45.0%
! TGCTGGTGCAGCTCTAATTA+GGG + chr4_3:35089059-35089078 Msa0639370:CDS 45.0%
ACTAATGACTCAGCTGGAGA+TGG + chr4_3:35089240-35089259 Msa0639370:CDS 45.0%
CTAATGACTCAGCTGGAGAT+GGG + chr4_3:35089241-35089260 Msa0639370:CDS 45.0%
! GACTACAACGGCTTCGATTT+TGG + chr4_3:35089263-35089282 Msa0639370:CDS 45.0%
GCTCGGGAAATCATTAAGCT+TGG + chr4_3:35089285-35089304 Msa0639370:CDS 45.0%
! TAAAACAGTAGCGGCTTTGG+TGG + chr4_3:35089362-35089381 Msa0639370:CDS 45.0%
AAGAGCTTGAGAAGTTGGCT+AGG + chr4_3:35089385-35089404 Msa0639370:CDS 45.0%
AAGTTGGCTAGGCCTGTTAA+AGG + chr4_3:35089396-35089415 Msa0639370:CDS 45.0%
!! GCTGTTGCTTCTATTTCTGC+TGG + chr4_3:35089524-35089543 Msa0639370:intron 45.0%
GATTGCTGAAGCAATTGGCA+AGG + chr4_3:35089571-35089590 Msa0639370:CDS 45.0%
AAACGAGGAGGAAGACTCTA+TGG - chr4_3:35089618-35089637 None:intergenic 45.0%
CATTCCTTCTTCGACTTCGA+CGG - chr4_3:35089648-35089667 None:intergenic 45.0%
! TGGAGGTATGAACTCTTTGC+TGG + chr4_3:35089666-35089685 Msa0639370:intron 45.0%
! TGAGTGGTTTTCTCCAACAG+AGG - chr4_3:35089907-35089926 None:intergenic 45.0%
AGCCTCACCAGTGATATCTT+CGG - chr4_3:35089956-35089975 None:intergenic 45.0%
AGATATCACTGGTGAGGCTT+TGG + chr4_3:35089957-35089976 Msa0639370:CDS 45.0%
! ACGCAGCTTGTTCACAACAA+GGG - chr4_3:35089986-35090005 None:intergenic 45.0%
! CTTTGATGGCAGCCACATTA+AGG - chr4_3:35090014-35090033 None:intergenic 45.0%
! ACCAAATCCTGGAGCTTTGA+TGG - chr4_3:35090028-35090047 None:intergenic 45.0%
AACAAGAAGGCCCAAATCAC+TGG - chr4_3:35090412-35090431 None:intergenic 45.0%
TCGAAAAGTGACCATCTCCA+AGG + chr4_3:35090464-35090483 Msa0639370:CDS 45.0%
TGCAGCATCAGCAATAATGG+TGG - chr4_3:35090496-35090515 None:intergenic 45.0%
CAAAGGATGAGTTGCAATCC+AGG + chr4_3:35090517-35090536 Msa0639370:CDS 45.0%
TTTCTTCAGTTGTGCAACCC+TGG - chr4_3:35090538-35090557 None:intergenic 45.0%
GACAGACTCAGTTTACGACT+CGG + chr4_3:35090569-35090588 Msa0639370:CDS 45.0%
! AGTTTACGACTCGGAGAAAC+TGG + chr4_3:35090578-35090597 Msa0639370:CDS 45.0%
GGCAGCAAAAGTTGCATTCT+TGG - chr4_3:35090703-35090722 None:intergenic 45.0%
! TGCAACTTTTGCTGCCATTG+AGG + chr4_3:35090707-35090726 Msa0639370:CDS 45.0%
! ACTTTTGCTGCCATTGAGGA+AGG + chr4_3:35090711-35090730 Msa0639370:CDS 45.0%
AGGGACAATACCTTCCTCAA+TGG - chr4_3:35090724-35090743 None:intergenic 45.0%
!! ATTGAGGAAGGTATTGTCCC+TGG + chr4_3:35090723-35090742 Msa0639370:CDS 45.0%
AACTAGAAGACGCAGATGAG+AGG + chr4_3:35090799-35090818 Msa0639370:CDS 45.0%
AGGAGCTGACATCGTTCAAA+AGG + chr4_3:35090824-35090843 Msa0639370:CDS 45.0%
TTCAACAACAATGGCCTGTG+TGG - chr4_3:35091529-35091548 None:intergenic 45.0%
TTGTTGAAAAGCCTAAGCCC+AGG + chr4_3:35091541-35091560 Msa0639370:CDS 45.0%
TGTTGAAAAGCCTAAGCCCA+GGG + chr4_3:35091542-35091561 Msa0639370:CDS 45.0%
! TTAAACGGTAAGGCCTTGTG+GGG - chr4_3:35091583-35091602 None:intergenic 45.0%
! CTTAAACGGTAAGGCCTTGT+GGG - chr4_3:35091584-35091603 None:intergenic 45.0%
ACTTAAACGGTAAGGCCTTG+TGG - chr4_3:35091585-35091604 None:intergenic 45.0%
!! TTTATTTATTTATATAAAGA+GGG - chr4_3:35088851-35088870 None:intergenic 5.0%
!! ATTTATTTATTTATATAAAG+AGG - chr4_3:35088852-35088871 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+AGG + chr4_3:35088940-35088959 Msa0639370:intron 5.0%
!!! TTTTTTTTTTTTTTTTTGAA+GGG + chr4_3:35088941-35088960 Msa0639370:intron 5.0%
!! GCGTTGGTTGAAGCCATGTT+TGG - chr4_3:35087959-35087978 None:intergenic 50.0%
TGAGGTAGAGGATAGAGCGT+TGG - chr4_3:35087975-35087994 None:intergenic 50.0%
GGTAGGAGAACGGAGAATTG+AGG - chr4_3:35087993-35088012 None:intergenic 50.0%
ACGGCGTGAATCTTGGTCAA+AGG - chr4_3:35088221-35088240 None:intergenic 50.0%
CAATTCCAGCCTGCATAGCA+CGG - chr4_3:35088240-35088259 None:intergenic 50.0%
!! GATGCTGTTGGCCTTACTCT+CGG + chr4_3:35088271-35088290 Msa0639370:CDS 50.0%
GGATGAGTTTGGCAGTCCTA+AGG + chr4_3:35088978-35088997 Msa0639370:CDS 50.0%
! TGGTGCAGCTCTAATTAGGG+AGG + chr4_3:35089062-35089081 Msa0639370:CDS 50.0%
AGCTGGAGATGGGACTACAA+CGG + chr4_3:35089251-35089270 Msa0639370:CDS 50.0%
!!! CAACGGCTTCGATTTTGGCT+CGG + chr4_3:35089268-35089287 Msa0639370:CDS 50.0%
!!! AACGGCTTCGATTTTGGCTC+GGG + chr4_3:35089269-35089288 Msa0639370:CDS 50.0%
GGACTTCTCAGTGTGACATC+AGG + chr4_3:35089306-35089325 Msa0639370:CDS 50.0%
GGTGGAAGAGCTTGAGAAGT+TGG + chr4_3:35089380-35089399 Msa0639370:CDS 50.0%
TTGGCTAGGCCTGTTAAAGG+TGG + chr4_3:35089399-35089418 Msa0639370:CDS 50.0%
GCTGAAGCAATTGGCAAGGT+TGG + chr4_3:35089575-35089594 Msa0639370:CDS 50.0%
ATTGGCAAGGTTGGACCTGA+TGG + chr4_3:35089584-35089603 Msa0639370:CDS 50.0%
TTCGACGGTTGTCTCAAACG+AGG - chr4_3:35089633-35089652 None:intergenic 50.0%
ACAACCGTCGAAGTCGAAGA+AGG + chr4_3:35089641-35089660 Msa0639370:CDS 50.0%
CGTCGAAGTCGAAGAAGGAA+TGG + chr4_3:35089646-35089665 Msa0639370:CDS 50.0%
CGAAGTCGAAGAAGGAATGG+AGG + chr4_3:35089649-35089668 Msa0639370:CDS 50.0%
CAAAGGGGCTCTCAATTGAG+TGG - chr4_3:35089923-35089942 None:intergenic 50.0%
TGCCGAAGATATCACTGGTG+AGG + chr4_3:35089951-35089970 Msa0639370:CDS 50.0%
! CACGCAGCTTGTTCACAACA+AGG - chr4_3:35089987-35090006 None:intergenic 50.0%
! CTTGTTGTGAACAAGCTGCG+TGG + chr4_3:35089985-35090004 Msa0639370:CDS 50.0%
GCTGCGTGGTATCCTTAATG+TGG + chr4_3:35089999-35090018 Msa0639370:CDS 50.0%
GCCATCAAAGCTCCAGGATT+TGG + chr4_3:35090024-35090043 Msa0639370:CDS 50.0%
TGAGTTCCAGGCCAGTGATT+TGG + chr4_3:35090398-35090417 Msa0639370:CDS 50.0%
GAGTTCCAGGCCAGTGATTT+GGG + chr4_3:35090399-35090418 Msa0639370:CDS 50.0%
GGTGGTAGAATCCTTGGAGA+TGG - chr4_3:35090478-35090497 None:intergenic 50.0%
TGCTACAGAGACCGAACTTG+AGG + chr4_3:35090653-35090672 Msa0639370:CDS 50.0%
CCTTTCCCCTTACCCAAACA+AGG - chr4_3:35091094-35091113 None:intergenic 50.0%
! CCTTGTTTGGGTAAGGGGAA+AGG + chr4_3:35091091-35091110 Msa0639370:intron 50.0%
AGAAGTGGTGAATGGGAGGT+TGG + chr4_3:35091387-35091406 Msa0639370:CDS 50.0%
CACACCTTGTTACCTTCGCA+GGG - chr4_3:35091467-35091486 None:intergenic 50.0%
! TCTGCAGAATGCTGCTTCAG+TGG + chr4_3:35091488-35091507 Msa0639370:CDS 50.0%
! AGAATGCTGCTTCAGTGGCT+GGG + chr4_3:35091493-35091512 Msa0639370:CDS 50.0%
TCTCCGTTCTCCTACCAACC+AGG + chr4_3:35087997-35088016 Msa0639370:CDS 55.0%
AGCAGGAAGGCGAACCAACA+TGG + chr4_3:35088133-35088152 Msa0639370:CDS 55.0%
GCAGGAAGGCGAACCAACAT+GGG + chr4_3:35088134-35088153 Msa0639370:CDS 55.0%
GAAGGCGAACCAACATGGGA+GGG + chr4_3:35088138-35088157 Msa0639370:CDS 55.0%
GCATAGCACGGCGTGAATCT+TGG - chr4_3:35088228-35088247 None:intergenic 55.0%
AGATTCACGCCGTGCTATGC+AGG + chr4_3:35088228-35088247 Msa0639370:CDS 55.0%
GACGGTTGTCTCAAACGAGG+AGG - chr4_3:35089630-35089649 None:intergenic 55.0%
!! ACTGCTAGGTGCTGAGTTCC+AGG + chr4_3:35090386-35090405 Msa0639370:intron 55.0%
TGGTGGAGTGGCAGTCATCA+AGG + chr4_3:35090623-35090642 Msa0639370:CDS 55.0%
GGAGTGGCAGTCATCAAGGT+CGG + chr4_3:35090627-35090646 Msa0639370:CDS 55.0%
!! GAGGAAGGTATTGTCCCTGG+CGG + chr4_3:35090726-35090745 Msa0639370:CDS 55.0%
GAAGACGCAGATGAGAGGCT+AGG + chr4_3:35090804-35090823 Msa0639370:CDS 55.0%
TCGACCCTGCGAAGGTAACA+AGG + chr4_3:35091460-35091479 Msa0639370:CDS 55.0%
GCACACCTTGTTACCTTCGC+AGG - chr4_3:35091468-35091487 None:intergenic 55.0%
! CAGAATGCTGCTTCAGTGGC+TGG + chr4_3:35091492-35091511 Msa0639370:CDS 55.0%
! TGGGATGGTCTTGACCACAC+AGG + chr4_3:35091512-35091531 Msa0639370:CDS 55.0%
GGAAGGCGAACCAACATGGG+AGG + chr4_3:35088137-35088156 Msa0639370:CDS 60.0%
TACCTCGGGGTCCGAGAGTA+AGG - chr4_3:35088285-35088304 None:intergenic 60.0%
GTGGCTGCCATCAAAGCTCC+AGG + chr4_3:35090018-35090037 Msa0639370:CDS 60.0%
GAAGGCCCAAATCACTGGCC+TGG - chr4_3:35090407-35090426 None:intergenic 60.0%
ACTCGGAGAAACTGGCCGAG+AGG + chr4_3:35090586-35090605 Msa0639370:CDS 60.0%
!! GAAGGTATTGTCCCTGGCGG+AGG + chr4_3:35090729-35090748 Msa0639370:CDS 60.0%
CCAATGCTGTACCTCCGCCA+GGG - chr4_3:35090743-35090762 None:intergenic 60.0%
ACCAATGCTGTACCTCCGCC+AGG - chr4_3:35090744-35090763 None:intergenic 60.0%
TGGAGTCATCGACCCTGCGA+AGG + chr4_3:35091452-35091471 Msa0639370:CDS 60.0%
! TGCTGCTTCAGTGGCTGGGA+TGG + chr4_3:35091497-35091516 Msa0639370:CDS 60.0%
TCACGCCGTGCTATGCAGGC+TGG + chr4_3:35088232-35088251 Msa0639370:CDS 65.0%
! CCCTGGCGGAGGTACAGCAT+TGG + chr4_3:35090740-35090759 Msa0639370:CDS 65.0%
GGCCTTACTCTCGGACCCCG+AGG + chr4_3:35088280-35088299 Msa0639370:CDS 70.0%
GCCTAAGCCCAGGGCAGCTG+CGG + chr4_3:35091551-35091570 Msa0639370:CDS 70.0%
GCCGCAGCTGCCCTGGGCTT+AGG - chr4_3:35091555-35091574 None:intergenic 75.0%
GCAGCAGCCGCAGCTGCCCT+GGG - chr4_3:35091561-35091580 None:intergenic 75.0%
GCTGCGGCTGCTGCCCCACA+AGG + chr4_3:35091567-35091586 Msa0639370:CDS 75.0%
! GGCAGCAGCCGCAGCTGCCC+TGG - chr4_3:35091562-35091581 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 35087800 35091840 35087800 ID=Msa0639370;Name=Msa0639370
chr4_3 mRNA 35087800 35091840 35087800 ID=Msa0639370-mRNA-1;Parent=Msa0639370;Name=Msa0639370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=162|1|1|1|1|1|8|238|587
chr4_3 exon 35087800 35088018 35087800 ID=Msa0639370-mRNA-1:exon:8262;Parent=Msa0639370-mRNA-1
chr4_3 exon 35088118 35088301 35088118 ID=Msa0639370-mRNA-1:exon:8263;Parent=Msa0639370-mRNA-1
chr4_3 exon 35088962 35089083 35088962 ID=Msa0639370-mRNA-1:exon:8264;Parent=Msa0639370-mRNA-1
chr4_3 exon 35089228 35089435 35089228 ID=Msa0639370-mRNA-1:exon:8265;Parent=Msa0639370-mRNA-1
chr4_3 exon 35089525 35089670 35089525 ID=Msa0639370-mRNA-1:exon:8266;Parent=Msa0639370-mRNA-1
chr4_3 exon 35089784 35090090 35089784 ID=Msa0639370-mRNA-1:exon:8267;Parent=Msa0639370-mRNA-1
chr4_3 exon 35090394 35090845 35090394 ID=Msa0639370-mRNA-1:exon:8268;Parent=Msa0639370-mRNA-1
chr4_3 exon 35091315 35091840 35091315 ID=Msa0639370-mRNA-1:exon:8269;Parent=Msa0639370-mRNA-1
chr4_3 five_prime_UTR 35087800 35087961 35087800 ID=Msa0639370-mRNA-1:five_prime_utr;Parent=Msa0639370-mRNA-1
chr4_3 CDS 35087962 35088018 35087962 ID=Msa0639370-mRNA-1:cds;Parent=Msa0639370-mRNA-1
chr4_3 CDS 35088118 35088301 35088118 ID=Msa0639370-mRNA-1:cds;Parent=Msa0639370-mRNA-1
chr4_3 CDS 35088962 35089083 35088962 ID=Msa0639370-mRNA-1:cds;Parent=Msa0639370-mRNA-1
chr4_3 CDS 35089228 35089435 35089228 ID=Msa0639370-mRNA-1:cds;Parent=Msa0639370-mRNA-1
chr4_3 CDS 35089525 35089670 35089525 ID=Msa0639370-mRNA-1:cds;Parent=Msa0639370-mRNA-1
chr4_3 CDS 35089784 35090090 35089784 ID=Msa0639370-mRNA-1:cds;Parent=Msa0639370-mRNA-1
chr4_3 CDS 35090394 35090845 35090394 ID=Msa0639370-mRNA-1:cds;Parent=Msa0639370-mRNA-1
chr4_3 CDS 35091315 35091602 35091315 ID=Msa0639370-mRNA-1:cds;Parent=Msa0639370-mRNA-1
chr4_3 three_prime_UTR 35091603 35091840 35091603 ID=Msa0639370-mRNA-1:three_prime_utr;Parent=Msa0639370-mRNA-1
Gene Sequence

>Msa0639370

ATGGCTTCAACCAACGCTCTATCCTCTACCTCAATTCTCCGTTCTCCTACCAACCAGGCACAAACGAGTTTAAGCAGGAAGGCGAACCAACATGGGAGGGTTAATTACAGACAGAAAGTTAACCGTTTTGTGGTTAAAGCAAGTGCTAAAGATATTGCCTTTGACCAAGATTCACGCCGTGCTATGCAGGCTGGAATTGATAAACTTGCTGATGCTGTTGGCCTTACTCTCGGACCCCGAGGGAGGAATGTTGTTTTGGATGAGTTTGGCAGTCCTAAGGTTGTAAACGATGGTGTGACAATTGCAAGAGCTATTGAGTTACCTGATGCTATGGAAAATGCTGGTGCAGCTCTAATTAGGGAGGTTGCTAGTAAAACTAATGACTCAGCTGGAGATGGGACTACAACGGCTTCGATTTTGGCTCGGGAAATCATTAAGCTTGGACTTCTCAGTGTGACATCAGGTGCTAATCCTGTGTCAATCAAGAAAGGAATTGATAAAACAGTAGCGGCTTTGGTGGAAGAGCTTGAGAAGTTGGCTAGGCCTGTTAAAGGTGGAGATGATATAAAAGCTGTTGCTTCTATTTCTGCTGGAAATGATGAGTTGATTGGAACAATGATTGCTGAAGCAATTGGCAAGGTTGGACCTGATGGTGTTTTATCCATAGAGTCTTCCTCCTCGTTTGAGACAACCGTCGAAGTCGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCCCCCCAATTTGTTACAAATCTTGAGAAATCAATTGTTGAATTTGAGAATGCAAGAGTCTTGATTACCGACCAAAAGATTTCCGCAATAAAAGATATAATTCCTCTGTTGGAGAAAACCACTCAATTGAGAGCCCCTTTGCTTATCATTGCCGAAGATATCACTGGTGAGGCTTTGGCTACCCTTGTTGTGAACAAGCTGCGTGGTATCCTTAATGTGGCTGCCATCAAAGCTCCAGGATTTGGTGAGAGAAGAAAGGCCCTCCTTCAAGACATTGCAATATTGACAGGTGCTGAGTTCCAGGCCAGTGATTTGGGCCTTCTTGTTGAAAGCACTTCAATTGAACAACTTGGTTTGGCTCGAAAAGTGACCATCTCCAAGGATTCTACCACCATTATTGCTGATGCTGCATCAAAGGATGAGTTGCAATCCAGGGTTGCACAACTGAAGAAAGAGTTGTTTGAGACAGACTCAGTTTACGACTCGGAGAAACTGGCCGAGAGGATTGCTAAATTATCTGGTGGAGTGGCAGTCATCAAGGTCGGTGCTGCTACAGAGACCGAACTTGAGGATCGTAAACTTAGAATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTCCCTGGCGGAGGTACAGCATTGGTTCATCTCTCTGCTTATGTTCCAGCAATCAAGGAAAAACTAGAAGACGCAGATGAGAGGCTAGGAGCTGACATCGTTCAAAAGGCATTGGTAGCACCTGCATCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTAGTTGTGGAGAAAATTAGAAGTGGTGAATGGGAGGTTGGTTACAATGCCATGACAGACACTTATGAGAATTTAATTGAGTCTGGAGTCATCGACCCTGCGAAGGTAACAAGGTGTGCTCTGCAGAATGCTGCTTCAGTGGCTGGGATGGTCTTGACCACACAGGCCATTGTTGTTGAAAAGCCTAAGCCCAGGGCAGCTGCGGCTGCTGCCCCACAAGGCCTTACCGTTTAA
Protein sequence

>Msa0639370

MASTNALSSTSILRSPTNQAQTSLSRKANQHGRVNYRQKVNRFVVKASAKDIAFDQDSRRAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLSVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVASISAGNDELIGTMIAEAIGKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNLEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVESTSIEQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAYVPAIKEKLEDADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIRSGEWEVGYNAMTDTYENLIESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPRAAAAAAPQGLTV*