AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0228220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0228220 MtrunA17_Chr2g0316881 91.047 659 54 3 1 658 1 655 0.0 998
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0228220 AT5G53930.1 68.750 48 15 0 611 658 482 529 4.34e-14 75.9

Find 191 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATAATAACATTCTTATT+TGG 0.083515 2_1:-79906596 None:intergenic
ACTTAAGCGATGATCTTATT+TGG 0.195541 2_1:+79906055 Msa0228220:exon
AAGGGTCTACTGCTCTTCTT+TGG 0.202156 2_1:-79906228 None:intergenic
TGCCACTGCTATTAATATTC+TGG 0.218197 2_1:-79905699 None:intergenic
CTTGCAATTTAGAGCAAGTA+TGG 0.226345 2_1:+79906308 Msa0228220:three_prime_UTR
CAACGATGTGTCCATGCTTT+TGG 0.229023 2_1:-79904108 None:intergenic
AAATCTCTTCCACTGTTTCT+TGG 0.243532 2_1:-79905196 None:intergenic
AATGAAATTGATTACCTTAG+AGG 0.257708 2_1:-79903323 None:intergenic
GCTACTCATATCTCTAAGTT+TGG 0.257917 2_1:-79904840 None:intergenic
CTATTAGCTATATTTCATTT+AGG 0.265013 2_1:+79906143 Msa0228220:three_prime_UTR
ACTTATGAAGAGGTCATTAA+TGG 0.279828 2_1:+79906082 Msa0228220:three_prime_UTR
AAGGGTTACTTCCCTGAGTA+TGG 0.284243 2_1:+79906482 Msa0228220:three_prime_UTR
ATCATCTACAATCTCCTCTT+TGG 0.285420 2_1:-79904672 None:intergenic
CTCTTCTTTGGGTTCCCATA+TGG 0.296466 2_1:-79906216 None:intergenic
TTGCAGGTCGATTACTCTAA+TGG 0.303423 2_1:+79903258 Msa0228220:exon
TCAGCCCTCAATTCCTCTTC+TGG 0.307736 2_1:-79904773 None:intergenic
CGAATAATGGCGCAACCATA+TGG 0.307935 2_1:+79906201 Msa0228220:three_prime_UTR
AGATAATAACATTCTTATTT+GGG 0.313732 2_1:-79906595 None:intergenic
GATGAATTTACGGAATTGAT+TGG 0.322195 2_1:+79904641 Msa0228220:CDS
TGCAGGTCGATTACTCTAAT+GGG 0.325276 2_1:+79903259 Msa0228220:exon
CGATTGGATTGGATTGGATT+GGG 0.325703 2_1:-79903108 None:intergenic
GATTGGATTGGATTGGGGTT+AGG 0.328139 2_1:-79903102 None:intergenic
GTGAAGAAGAAGAAGCGATT+AGG 0.328482 2_1:-79903189 None:intergenic
TGAAGAAGAAGAAGCGATTA+GGG 0.339416 2_1:-79903188 None:intergenic
AATTCCTGGTTATCAGTAAC+TGG 0.342960 2_1:-79905061 None:intergenic
CTTTCTTTCTGTTCTTCCCC+TGG 0.346328 2_1:-79904432 None:intergenic
TAATATTCTGGATTGAAGAT+TGG 0.350049 2_1:-79905687 None:intergenic
TAATACCATGACGAGCAATT+TGG 0.351981 2_1:+79905324 Msa0228220:CDS
AAGCATAACAACTTGGATAA+GGG 0.352245 2_1:+79905544 Msa0228220:CDS
ATTCATTGACTACTTTGTTT+CGG 0.354273 2_1:-79905297 None:intergenic
AAAAGAGGGTGATGAATTTA+CGG 0.355946 2_1:+79904631 Msa0228220:CDS
AAACCCCTGCCTTGGCTAGA+AGG 0.362464 2_1:+79906030 Msa0228220:CDS
CAGTAACTGGTTGCTTCACT+TGG 0.364914 2_1:-79905048 None:intergenic
ACTTATCTTGAACCAATTCC+TGG 0.367721 2_1:-79905075 None:intergenic
GTGCAAAGAGTGGTAGATAT+AGG 0.372917 2_1:+79904492 Msa0228220:CDS
ACCTTCCAATGCACAGTTGC+CGG 0.374070 2_1:+79905624 Msa0228220:CDS
CAATCACACGGTTGCAGACT+TGG 0.374745 2_1:+79906347 Msa0228220:three_prime_UTR
AAGAAACTAGTTTGCCGGTT+AGG 0.376205 2_1:+79905152 Msa0228220:CDS
TAAGCATAACAACTTGGATA+AGG 0.378692 2_1:+79905543 Msa0228220:CDS
AGGGTCTACTGCTCTTCTTT+GGG 0.383057 2_1:-79906227 None:intergenic
TGGGCTTAGAAGAGACATTC+AGG 0.383625 2_1:+79904370 Msa0228220:CDS
CCGATTGGATTGGATTGGAT+TGG 0.385220 2_1:-79903109 None:intergenic
ATATTTCATTTAGGTTATAT+CGG 0.387238 2_1:+79906152 Msa0228220:three_prime_UTR
GAAATCGCGTAGGAAGAAAA+AGG 0.387991 2_1:+79904313 Msa0228220:CDS
GATTACCTTAGAGGAATGTT+TGG 0.390546 2_1:-79903314 None:intergenic
TAATCTGAATGACGTTGATT+TGG 0.391625 2_1:+79904925 Msa0228220:CDS
ACACTCCAAACATTCCTCTA+AGG 0.401230 2_1:+79903309 Msa0228220:CDS
GATAATGTCAAAGACATTAG+AGG 0.408028 2_1:+79905475 Msa0228220:CDS
AGTTACTGATAACCAGGAAT+TGG 0.412828 2_1:+79905063 Msa0228220:CDS
TCCTCGTGAAAAGTTGGTCT+TGG 0.413883 2_1:+79905423 Msa0228220:CDS
ACTAAATTTCTCCTCCTAAC+CGG 0.415379 2_1:-79905166 None:intergenic
GGAAGTTCGGGCATGGTTGT+TGG 0.418097 2_1:-79905403 None:intergenic
TGTAGAAGAAACTAGTTTGC+CGG 0.420779 2_1:+79905147 Msa0228220:CDS
TGCAAAGAGTGGTAGATATA+GGG 0.420865 2_1:+79904493 Msa0228220:CDS
CTACTCATATCTCTAAGTTT+GGG 0.422245 2_1:-79904839 None:intergenic
GATGGCTTGTGCACCGGAAA+AGG 0.430440 2_1:+79905258 Msa0228220:CDS
ATTAGAGGAGTGCCTTCTGC+TGG 0.432280 2_1:+79905490 Msa0228220:CDS
GGGGATAAACCACCTATTCA+TGG 0.432834 2_1:+79905511 Msa0228220:CDS
TCATCAGTAGAGAATAATTC+AGG 0.434046 2_1:+79905766 Msa0228220:CDS
GAGAGAAGCAAGTGTTAGTT+CGG 0.437167 2_1:+79904340 Msa0228220:CDS
TTGTCCCAGCACGAACTTCA+AGG 0.441812 2_1:-79904862 None:intergenic
ACAGGCTTTGAGTAACTTCA+AGG 0.442365 2_1:+79906463 Msa0228220:three_prime_UTR
AGAACCCGATTGGATTGGAT+TGG 0.443933 2_1:-79903114 None:intergenic
TTTGCTCAAACTGAGAGCTC+TGG 0.447594 2_1:-79905810 None:intergenic
TGTGATGAGGGGTGGTGAAT+TGG 0.449971 2_1:+79905843 Msa0228220:CDS
TGGGACAAGTGAATCTAAAA+AGG 0.456531 2_1:+79904877 Msa0228220:CDS
GAAAGAGAACCCGATTGGAT+TGG 0.457344 2_1:-79903119 None:intergenic
ACAGTGAATATGAGAGCTCC+AGG 0.460158 2_1:+79904414 Msa0228220:CDS
GGGTATATATAGATCGATAT+TGG 0.470698 2_1:+79903058 None:intergenic
AGTTGCCTTCTAGCCAAGGC+AGG 0.470893 2_1:-79906035 None:intergenic
AATCCACCTAGATTTGTTCT+CGG 0.471685 2_1:-79904588 None:intergenic
CCAATCCAATCCAATCCAAT+CGG 0.473088 2_1:+79903109 Msa0228220:five_prime_UTR
AAAGTCGTAAGAAGCGGGTT+CGG 0.482768 2_1:+79904195 Msa0228220:CDS
TGATGAATGTACTTACGAAC+AGG 0.485911 2_1:+79904547 Msa0228220:CDS
GGCAAACTAGTTTCTTCTAC+AGG 0.486591 2_1:-79905145 None:intergenic
ATTAAAGAGTTTATCTTGCT+AGG 0.487351 2_1:-79906528 None:intergenic
CGAACTTCCTCGTGAAAAGT+TGG 0.488706 2_1:+79905417 Msa0228220:CDS
CCCTAAGAAAACCCCTGCCT+TGG 0.492302 2_1:+79906022 Msa0228220:CDS
TTAAATGTAGATCCATGAAT+AGG 0.493845 2_1:-79905523 None:intergenic
ACGTGTCCGAGAACAAATCT+AGG 0.494576 2_1:+79904582 Msa0228220:CDS
AGTTATTACTGTTGCAAAAG+AGG 0.495914 2_1:+79904616 Msa0228220:CDS
GTTCGTAAGTACATTCATCA+TGG 0.496035 2_1:-79904544 None:intergenic
CAGGGGAAGAACAGAAAGAA+AGG 0.497397 2_1:+79904433 Msa0228220:CDS
GTGAGGACTCTTTGTATGCC+AGG 0.498220 2_1:+79904243 Msa0228220:CDS
TTAGAAGAGACATTCAGGTT+GGG 0.502512 2_1:+79904375 Msa0228220:CDS
GAATCATGGCAAGGTTCAGA+TGG 0.504852 2_1:-79905355 None:intergenic
GAATAATGGCGCAACCATAT+GGG 0.508607 2_1:+79906202 Msa0228220:three_prime_UTR
GAATGTTCAGGTTAGCTACA+AGG 0.509476 2_1:+79905992 Msa0228220:intron
GTGTTAGTTCGGTGAGCAGT+GGG 0.510367 2_1:+79904351 Msa0228220:CDS
AGAAGATCGAGGGGAAGAAG+TGG 0.511869 2_1:+79904467 Msa0228220:CDS
TGTCACAGCTGATAGTTGAC+AGG 0.512145 2_1:+79906445 Msa0228220:three_prime_UTR
ACTCACCGGCAACTGTGCAT+TGG 0.512234 2_1:-79905629 None:intergenic
GTTACTTCCCTGAGTATGGA+TGG 0.516001 2_1:+79906486 Msa0228220:three_prime_UTR
CAGTGGAAGAGATTTGAACT+TGG 0.517501 2_1:+79905204 Msa0228220:CDS
GACGAGTCATGCAATGCTGC+AGG 0.517980 2_1:+79905730 Msa0228220:CDS
TGCACCAGAAGAGGAATTGA+GGG 0.520146 2_1:+79904769 Msa0228220:CDS
AGTAGCCTTGAAGTTCGTGC+TGG 0.520350 2_1:+79904857 Msa0228220:CDS
GAGGGGTGGTGAATTGGTAC+AGG 0.520556 2_1:+79905849 Msa0228220:CDS
TTAGAGGAGTGCCTTCTGCT+GGG 0.521009 2_1:+79905491 Msa0228220:CDS
GTTATTACTGTTGCAAAAGA+GGG 0.523669 2_1:+79904617 Msa0228220:CDS
TATTTGGTGGTTTAGACTAA+GGG 0.525292 2_1:+79903999 Msa0228220:intron
ATGCACCAGAAGAGGAATTG+AGG 0.526701 2_1:+79904768 Msa0228220:CDS
CTTAGAAGAGACATTCAGGT+TGG 0.526829 2_1:+79904374 Msa0228220:CDS
TGAGTGAGGCTGATGAAGAA+AGG 0.531590 2_1:+79905647 Msa0228220:CDS
GCGAAGAAAGAGAACCCGAT+TGG 0.533855 2_1:-79903124 None:intergenic
TGTCCTCTAGTTCTGAAGAT+AGG 0.534094 2_1:+79904129 Msa0228220:CDS
TTCGTAAGTACATTCATCAT+GGG 0.537747 2_1:-79904543 None:intergenic
CTTAAGTTGCCTTCTAGCCA+AGG 0.538577 2_1:-79906039 None:intergenic
TTCACGAGGAAGTTCGGGCA+TGG 0.538827 2_1:-79905410 None:intergenic
TAAGAAACATAAATCAAAGA+AGG 0.539580 2_1:+79904040 Msa0228220:CDS
GATTCAGATGGCTTGTGCAC+CGG 0.539689 2_1:+79905252 Msa0228220:CDS
TCTTCATCAGCCTCACTCAC+CGG 0.540161 2_1:-79905643 None:intergenic
TTACTGTCATTACTTCTACA+AGG 0.540510 2_1:-79904704 None:intergenic
GAAAGACAAAAGAAGATCGA+GGG 0.544223 2_1:+79904457 Msa0228220:CDS
AGAAGTGGAAGTGCAAAGAG+TGG 0.545278 2_1:+79904482 Msa0228220:CDS
AGCATAACAACTTGGATAAG+GGG 0.546379 2_1:+79905545 Msa0228220:CDS
AAACTAGTTTGCCGGTTAGG+AGG 0.547624 2_1:+79905155 Msa0228220:CDS
TTGAGGGCTGAGGATGTGAC+AGG 0.554815 2_1:+79904785 Msa0228220:CDS
TACACATGATGCACCAGAAG+AGG 0.555450 2_1:+79904760 Msa0228220:CDS
CTCAAACTGAGAGCTCTGGT+TGG 0.556049 2_1:-79905806 None:intergenic
AGCGACTTTGAAGTGAATCA+TGG 0.557127 2_1:-79905369 None:intergenic
CAATCCAATCCAATCCAATC+GGG 0.557244 2_1:+79903110 Msa0228220:five_prime_UTR
TACTGTCATTACTTCTACAA+GGG 0.558096 2_1:-79904703 None:intergenic
AGACCTATCTTCAGAACTAG+AGG 0.558097 2_1:-79904132 None:intergenic
AGAAGAGGAATTGAGGGCTG+AGG 0.559554 2_1:+79904775 Msa0228220:CDS
TACATTTAAGCATAACAACT+TGG 0.559898 2_1:+79905537 Msa0228220:CDS
CAATGCTGCAGGGATGTTGA+CGG 0.560785 2_1:+79905741 Msa0228220:CDS
GTGGTTTAGACTAAGGGAAG+TGG 0.561766 2_1:+79904005 Msa0228220:intron
GTTCCACCAGAAAACATTGA+AGG 0.564170 2_1:-79906247 None:intergenic
ACGTTGACCCATCCATACTC+AGG 0.565905 2_1:-79906494 None:intergenic
TACTTGCTCTAAATTGCAAG+TGG 0.567570 2_1:-79906305 None:intergenic
GACTGTTCGATTGATAAGAT+CGG 0.568284 2_1:+79906369 Msa0228220:three_prime_UTR
ATCCAGAATATTAATAGCAG+TGG 0.568393 2_1:+79905697 Msa0228220:CDS
TGTGAAAAGTCGTAAGAAGC+GGG 0.568597 2_1:+79904190 Msa0228220:CDS
GATTGGATTGGATTGGATTG+GGG 0.569836 2_1:-79903107 None:intergenic
AATCATGGCAAGGTTCAGAT+GGG 0.571112 2_1:-79905354 None:intergenic
AAAGAGAAACCTCACGGCGA+CGG 0.571181 2_1:-79904064 None:intergenic
TTTGGGACGTATGTTAGATG+AGG 0.577013 2_1:-79906578 None:intergenic
ATTTGGTGAAACTTATGAAG+AGG 0.580581 2_1:+79906072 Msa0228220:three_prime_UTR
GAAGTAATGACAGTAACGAT+GGG 0.591074 2_1:+79904711 Msa0228220:CDS
CAGGCTTTGAGTAACTTCAA+GGG 0.591201 2_1:+79906464 Msa0228220:three_prime_UTR
CTATGATGATTCCAAAAGCA+TGG 0.593985 2_1:+79904097 Msa0228220:CDS
TCATCATGGGGACTACTACA+AGG 0.594139 2_1:-79904530 None:intergenic
GCAGGTCGATTACTCTAATG+GGG 0.594561 2_1:+79903260 Msa0228220:exon
GTAGCCTTGAAGTTCGTGCT+GGG 0.595750 2_1:+79904858 Msa0228220:CDS
ACCGGCAACTGTGCATTGGA+AGG 0.595875 2_1:-79905625 None:intergenic
AAAGACAAAAGAAGATCGAG+GGG 0.596140 2_1:+79904458 Msa0228220:CDS
TTCCACCAGAAAACATTGAA+GGG 0.596274 2_1:-79906246 None:intergenic
GTTGCCTTCTAGCCAAGGCA+GGG 0.596364 2_1:-79906034 None:intergenic
TGCACAGTTGCCGGTGAGTG+AGG 0.599112 2_1:+79905633 Msa0228220:CDS
TGAATCCAAATTGCTCGTCA+TGG 0.599716 2_1:-79905329 None:intergenic
GCAACCAGTTACTGATAACC+AGG 0.600839 2_1:+79905057 Msa0228220:CDS
TAGTTCTGTGAAGATTCAGA+TGG 0.602999 2_1:+79905240 Msa0228220:CDS
AATGCTGCAGGGATGTTGAC+GGG 0.604088 2_1:+79905742 Msa0228220:CDS
CGGTCGACTGGACTTGACCT+CGG 0.604399 2_1:-79904991 None:intergenic
AGTGTTAGTTCGGTGAGCAG+TGG 0.604734 2_1:+79904350 Msa0228220:CDS
CTTTGAAGTGAATCATGGCA+AGG 0.608917 2_1:-79905364 None:intergenic
TTGCCTTCTAGCCAAGGCAG+GGG 0.609078 2_1:-79906033 None:intergenic
GGTGGTTTATCCCCAGCAGA+AGG 0.609791 2_1:-79905502 None:intergenic
AATGTAGATCCATGAATAGG+TGG 0.611994 2_1:-79905520 None:intergenic
CGTTGACCCATCCATACTCA+GGG 0.614152 2_1:-79906493 None:intergenic
TTACTTCCCTGAGTATGGAT+GGG 0.615540 2_1:+79906487 Msa0228220:three_prime_UTR
CAGTGAATATGAGAGCTCCA+GGG 0.616705 2_1:+79904415 Msa0228220:CDS
ATGTGAAAAGTCGTAAGAAG+CGG 0.621387 2_1:+79904189 Msa0228220:CDS
TAGAGGAGTGCCTTCTGCTG+GGG 0.622873 2_1:+79905492 Msa0228220:CDS
AGAAAGACAAAAGAAGATCG+AGG 0.626492 2_1:+79904456 Msa0228220:CDS
GTTGCTTATCCAAGAAACAG+TGG 0.626747 2_1:+79905187 Msa0228220:CDS
AGAAGTAATGACAGTAACGA+TGG 0.631444 2_1:+79904710 Msa0228220:CDS
AGCTAGAAAGAGAAACCTCA+CGG 0.631927 2_1:-79904070 None:intergenic
AGATAAGCATGATGAGACGA+AGG 0.634703 2_1:+79904289 Msa0228220:CDS
AATTCAGGCAAAGTACTAGA+CGG 0.636302 2_1:+79905781 Msa0228220:CDS
GTTCGATTGATAAGATCGGA+TGG 0.640472 2_1:+79906373 Msa0228220:three_prime_UTR
AGTGAATATGAGAGCTCCAG+GGG 0.647350 2_1:+79904416 Msa0228220:CDS
GATTGGAAATGAAACCAAAG+AGG 0.652440 2_1:+79904658 Msa0228220:CDS
AAAGAAGGTCCGTCGCCGTG+AGG 0.652504 2_1:+79904055 Msa0228220:CDS
CATGGTTGTTGGCTTCAGAG+AGG 0.657768 2_1:-79905392 None:intergenic
GAAAACTTACGAAAGTTCCG+AGG 0.662212 2_1:+79904974 Msa0228220:CDS
AGACGAAGGAGAAATCGCGT+AGG 0.678309 2_1:+79904303 Msa0228220:CDS
ACGAGTCATGCAATGCTGCA+GGG 0.679829 2_1:+79905731 Msa0228220:CDS
AAGTAATGACAGTAACGATG+GGG 0.680469 2_1:+79904712 Msa0228220:CDS
GAGCAAGTATGGATTGCATG+CGG 0.681106 2_1:+79906319 Msa0228220:three_prime_UTR
GGCTGATGAAGAAAGGAATG+CGG 0.686058 2_1:+79905654 Msa0228220:CDS
TCGTAAGTACATTCATCATG+GGG 0.695225 2_1:-79904542 None:intergenic
CATGCGGTCAGACAATCACA+CGG 0.711078 2_1:+79906335 Msa0228220:three_prime_UTR
ATCATGGCAAGGTTCAGATG+GGG 0.712928 2_1:-79905353 None:intergenic
TGTCCGAGAACAAATCTAGG+TGG 0.715026 2_1:+79904585 Msa0228220:CDS
AGTAATGACAGTAACGATGG+GGG 0.715447 2_1:+79904713 Msa0228220:CDS
ACAATGACTGTGATGAGGGG+TGG 0.719420 2_1:+79905835 Msa0228220:CDS
AAAACAATGACTGTGATGAG+GGG 0.727932 2_1:+79905832 Msa0228220:CDS
TCACAAAGCAGACTTACACA+AGG 0.731150 2_1:-79906277 None:intergenic
ATACAGCTCTGACAGCAGTG+AGG 0.754256 2_1:+79904226 Msa0228220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATTTATTATTTTTAATC+GGG + chr2_1:79903381-79903400 Msa0228220:intron 10.0%
!!! TTGCTATTTATATAATTTTT+CGG + chr2_1:79903447-79903466 Msa0228220:intron 10.0%
!! TATTAGTAGTAATAATAAAA+AGG - chr2_1:79905966-79905985 None:intergenic 10.0%
!!! TTGAATTTTTCTATTTGATT+TGG + chr2_1:79903899-79903918 Msa0228220:intron 15.0%
!!! ATATTTCATTTAGGTTATAT+CGG + chr2_1:79906152-79906171 Msa0228220:three_prime_UTR 15.0%
!!! AGATAATAACATTCTTATTT+GGG - chr2_1:79906598-79906617 None:intergenic 15.0%
!! AAGATAATAACATTCTTATT+TGG - chr2_1:79906599-79906618 None:intergenic 15.0%
!!! AAAACTCTTATTTTTTTTAG+AGG + chr2_1:79906633-79906652 Msa0228220:three_prime_UTR 15.0%
!!! ATGAACTTTGAAAAAGAAAA+GGG - chr2_1:79903237-79903256 None:intergenic 20.0%
!!! AATGAACTTTGAAAAAGAAA+AGG - chr2_1:79903238-79903257 None:intergenic 20.0%
!!! GTGTTTTTTTTTTTGGTTTA+AGG + chr2_1:79903612-79903631 Msa0228220:intron 20.0%
!!! AATATGCATTTTTTCCTATT+TGG + chr2_1:79903983-79904002 Msa0228220:intron 20.0%
!! TAAGAAACATAAATCAAAGA+AGG + chr2_1:79904040-79904059 Msa0228220:CDS 20.0%
!!! GCAGAAAGTATTAAAAATAA+GGG + chr2_1:79905445-79905464 Msa0228220:CDS 20.0%
!! TAGTAATAATAAAAAGGACA+GGG - chr2_1:79905960-79905979 None:intergenic 20.0%
!! CTATTAGCTATATTTCATTT+AGG + chr2_1:79906143-79906162 Msa0228220:three_prime_UTR 20.0%
!!! TTTTTCAAAGTTCATTTTGC+AGG + chr2_1:79903242-79903261 Msa0228220:five_prime_UTR 25.0%
! AATGAAATTGATTACCTTAG+AGG - chr2_1:79903326-79903345 None:intergenic 25.0%
! ATATATGATAGACACAAAGT+TGG - chr2_1:79903482-79903501 None:intergenic 25.0%
!! AAAACAGATTTTTATCTCCT+GGG - chr2_1:79903560-79903579 None:intergenic 25.0%
!! AAAAACAGATTTTTATCTCC+TGG - chr2_1:79903561-79903580 None:intergenic 25.0%
!!! GTGATTGGTGTTTTTTTTTT+TGG + chr2_1:79903605-79903624 Msa0228220:intron 25.0%
! TTATTTCCATAAATTCTCCA+CGG + chr2_1:79903747-79903766 Msa0228220:intron 25.0%
!! TTTCTGTTCAGAAGTTTTTA+CGG - chr2_1:79905014-79905033 None:intergenic 25.0%
!! ATTCATTGACTACTTTGTTT+CGG - chr2_1:79905300-79905319 None:intergenic 25.0%
!!! GGCAGAAAGTATTAAAAATA+AGG + chr2_1:79905444-79905463 Msa0228220:CDS 25.0%
! TTAAATGTAGATCCATGAAT+AGG - chr2_1:79905526-79905545 None:intergenic 25.0%
! TACATTTAAGCATAACAACT+TGG + chr2_1:79905537-79905556 Msa0228220:CDS 25.0%
! TAATATTCTGGATTGAAGAT+TGG - chr2_1:79905690-79905709 None:intergenic 25.0%
! GTAGTAATAATAAAAAGGAC+AGG - chr2_1:79905961-79905980 None:intergenic 25.0%
!! CTAATAATTTGTGAATGTTC+AGG + chr2_1:79905980-79905999 Msa0228220:intron 25.0%
!!! GTAGTTTTTTACACGAATAA+TGG + chr2_1:79906188-79906207 Msa0228220:three_prime_UTR 25.0%
!! TTAAACTCATTTTGTGATGT+TGG + chr2_1:79906417-79906436 Msa0228220:three_prime_UTR 25.0%
! ATTAAAGAGTTTATCTTGCT+AGG - chr2_1:79906531-79906550 None:intergenic 25.0%
!!! TTTTGAAAAACCACTTTCAA+GGG - chr2_1:79906713-79906732 None:intergenic 25.0%
!!! ATTTTGAAAAACCACTTTCA+AGG - chr2_1:79906714-79906733 None:intergenic 25.0%
!!! TTTTGGTTTAAGGATCTGTT+TGG + chr2_1:79903622-79903641 Msa0228220:intron 30.0%
GGAGAATTTATGGAAATAAG+CGG - chr2_1:79903746-79903765 None:intergenic 30.0%
! ATTAAGTTGTTTACCTATGC+AGG + chr2_1:79903865-79903884 Msa0228220:intron 30.0%
! TTAAGTTGTTTACCTATGCA+GGG + chr2_1:79903866-79903885 Msa0228220:intron 30.0%
!!! ATGCATTTTTTCCTATTTGG+TGG + chr2_1:79903986-79904005 Msa0228220:intron 30.0%
! TATTTGGTGGTTTAGACTAA+GGG + chr2_1:79903999-79904018 Msa0228220:intron 30.0%
TTCGTAAGTACATTCATCAT+GGG - chr2_1:79904546-79904565 None:intergenic 30.0%
AGTTATTACTGTTGCAAAAG+AGG + chr2_1:79904616-79904635 Msa0228220:CDS 30.0%
GTTATTACTGTTGCAAAAGA+GGG + chr2_1:79904617-79904636 Msa0228220:CDS 30.0%
AAAAGAGGGTGATGAATTTA+CGG + chr2_1:79904631-79904650 Msa0228220:CDS 30.0%
GATGAATTTACGGAATTGAT+TGG + chr2_1:79904641-79904660 Msa0228220:CDS 30.0%
TACTGTCATTACTTCTACAA+GGG - chr2_1:79904706-79904725 None:intergenic 30.0%
TTACTGTCATTACTTCTACA+AGG - chr2_1:79904707-79904726 None:intergenic 30.0%
CTACTCATATCTCTAAGTTT+GGG - chr2_1:79904842-79904861 None:intergenic 30.0%
! TAATCTGAATGACGTTGATT+TGG + chr2_1:79904925-79904944 Msa0228220:CDS 30.0%
GATAATGTCAAAGACATTAG+AGG + chr2_1:79905475-79905494 Msa0228220:CDS 30.0%
TAAGCATAACAACTTGGATA+AGG + chr2_1:79905543-79905562 Msa0228220:CDS 30.0%
AAGCATAACAACTTGGATAA+GGG + chr2_1:79905544-79905563 Msa0228220:CDS 30.0%
ATCCAGAATATTAATAGCAG+TGG + chr2_1:79905697-79905716 Msa0228220:CDS 30.0%
TCATCAGTAGAGAATAATTC+AGG + chr2_1:79905766-79905785 Msa0228220:CDS 30.0%
AAAAAACAATGACTGTGATG+AGG + chr2_1:79905830-79905849 Msa0228220:CDS 30.0%
AAAAACAATGACTGTGATGA+GGG + chr2_1:79905831-79905850 Msa0228220:CDS 30.0%
ATAATAAAAAGGACAGGGAA+AGG - chr2_1:79905955-79905974 None:intergenic 30.0%
ACTTAAGCGATGATCTTATT+TGG + chr2_1:79906055-79906074 Msa0228220:exon 30.0%
! ATTTGGTGAAACTTATGAAG+AGG + chr2_1:79906072-79906091 Msa0228220:three_prime_UTR 30.0%
ACTTATGAAGAGGTCATTAA+TGG + chr2_1:79906082-79906101 Msa0228220:three_prime_UTR 30.0%
!!! TTTTTTAAACCCCTTGAAAG+TGG + chr2_1:79906700-79906719 Msa0228220:three_prime_UTR 30.0%
TTTGAAAAACCACTTTCAAG+GGG - chr2_1:79906712-79906731 None:intergenic 30.0%
TGAAGAAGAAGAAGCGATTA+GGG - chr2_1:79903191-79903210 None:intergenic 35.0%
GATTACCTTAGAGGAATGTT+TGG - chr2_1:79903317-79903336 None:intergenic 35.0%
TTGTGAACTTAACTGACACT+GGG + chr2_1:79903518-79903537 Msa0228220:intron 35.0%
GTGTATAATTCATGTTTCCC+AGG + chr2_1:79903540-79903559 Msa0228220:intron 35.0%
GTTTAAGGATCTGTTTGGAT+TGG + chr2_1:79903627-79903646 Msa0228220:intron 35.0%
ATTGACATAAACCCTTGTGA+CGG + chr2_1:79903671-79903690 Msa0228220:intron 35.0%
AATAAGCGGAACACAACTTA+TGG - chr2_1:79903732-79903751 None:intergenic 35.0%
! ACTATTTTCATAAGCTACCG+TGG - chr2_1:79903767-79903786 None:intergenic 35.0%
AATACATTAAGACCCTGCAT+AGG - chr2_1:79903881-79903900 None:intergenic 35.0%
TCAACAGACTACATATGGAA+AGG - chr2_1:79903946-79903965 None:intergenic 35.0%
TCAACTCAACAGACTACATA+TGG - chr2_1:79903951-79903970 None:intergenic 35.0%
CTTAGTCTAAACCACCAAAT+AGG - chr2_1:79904000-79904019 None:intergenic 35.0%
! CTATTTGGTGGTTTAGACTA+AGG + chr2_1:79903998-79904017 Msa0228220:intron 35.0%
CTATGATGATTCCAAAAGCA+TGG + chr2_1:79904097-79904116 Msa0228220:CDS 35.0%
GGTCTAAAAGAAAAAGAGAG+CGG + chr2_1:79904150-79904169 Msa0228220:CDS 35.0%
ATGTGAAAAGTCGTAAGAAG+CGG + chr2_1:79904189-79904208 Msa0228220:CDS 35.0%
! TTAGAAGAGACATTCAGGTT+GGG + chr2_1:79904375-79904394 Msa0228220:CDS 35.0%
AGAAAGACAAAAGAAGATCG+AGG + chr2_1:79904456-79904475 Msa0228220:CDS 35.0%
GAAAGACAAAAGAAGATCGA+GGG + chr2_1:79904457-79904476 Msa0228220:CDS 35.0%
AAAGACAAAAGAAGATCGAG+GGG + chr2_1:79904458-79904477 Msa0228220:CDS 35.0%
TGCAAAGAGTGGTAGATATA+GGG + chr2_1:79904493-79904512 Msa0228220:CDS 35.0%
TCGTAAGTACATTCATCATG+GGG - chr2_1:79904545-79904564 None:intergenic 35.0%
GTTCGTAAGTACATTCATCA+TGG - chr2_1:79904547-79904566 None:intergenic 35.0%
TGATGAATGTACTTACGAAC+AGG + chr2_1:79904547-79904566 Msa0228220:CDS 35.0%
! AATCCACCTAGATTTGTTCT+CGG - chr2_1:79904591-79904610 None:intergenic 35.0%
GATTGGAAATGAAACCAAAG+AGG + chr2_1:79904658-79904677 Msa0228220:CDS 35.0%
ATCATCTACAATCTCCTCTT+TGG - chr2_1:79904675-79904694 None:intergenic 35.0%
AGAAGTAATGACAGTAACGA+TGG + chr2_1:79904710-79904729 Msa0228220:CDS 35.0%
GAAGTAATGACAGTAACGAT+GGG + chr2_1:79904711-79904730 Msa0228220:CDS 35.0%
AAGTAATGACAGTAACGATG+GGG + chr2_1:79904712-79904731 Msa0228220:CDS 35.0%
GCTACTCATATCTCTAAGTT+TGG - chr2_1:79904843-79904862 None:intergenic 35.0%
TGGGACAAGTGAATCTAAAA+AGG + chr2_1:79904877-79904896 Msa0228220:CDS 35.0%
GACAAGTGAATCTAAAAAGG+AGG + chr2_1:79904880-79904899 Msa0228220:CDS 35.0%
AATTCCTGGTTATCAGTAAC+TGG - chr2_1:79905064-79905083 None:intergenic 35.0%
AGTTACTGATAACCAGGAAT+TGG + chr2_1:79905063-79905082 Msa0228220:CDS 35.0%
ACTTATCTTGAACCAATTCC+TGG - chr2_1:79905078-79905097 None:intergenic 35.0%
! TGTAGAAGAAACTAGTTTGC+CGG + chr2_1:79905147-79905166 Msa0228220:CDS 35.0%
ACTAAATTTCTCCTCCTAAC+CGG - chr2_1:79905169-79905188 None:intergenic 35.0%
! AAATCTCTTCCACTGTTTCT+TGG - chr2_1:79905199-79905218 None:intergenic 35.0%
! TAGTTCTGTGAAGATTCAGA+TGG + chr2_1:79905240-79905259 Msa0228220:CDS 35.0%
TAATACCATGACGAGCAATT+TGG + chr2_1:79905324-79905343 Msa0228220:CDS 35.0%
AATGTAGATCCATGAATAGG+TGG - chr2_1:79905523-79905542 None:intergenic 35.0%
AGCATAACAACTTGGATAAG+GGG + chr2_1:79905545-79905564 Msa0228220:CDS 35.0%
TGCCACTGCTATTAATATTC+TGG - chr2_1:79905702-79905721 None:intergenic 35.0%
! AATTCAGGCAAAGTACTAGA+CGG + chr2_1:79905781-79905800 Msa0228220:CDS 35.0%
AAAACAATGACTGTGATGAG+GGG + chr2_1:79905832-79905851 Msa0228220:CDS 35.0%
TTCCACCAGAAAACATTGAA+GGG - chr2_1:79906249-79906268 None:intergenic 35.0%
! TACTTGCTCTAAATTGCAAG+TGG - chr2_1:79906308-79906327 None:intergenic 35.0%
! CTTGCAATTTAGAGCAAGTA+TGG + chr2_1:79906308-79906327 Msa0228220:three_prime_UTR 35.0%
GACTGTTCGATTGATAAGAT+CGG + chr2_1:79906369-79906388 Msa0228220:three_prime_UTR 35.0%
! GATTGGATTGGATTGGATTG+GGG - chr2_1:79903110-79903129 None:intergenic 40.0%
! CGATTGGATTGGATTGGATT+GGG - chr2_1:79903111-79903130 None:intergenic 40.0%
CCAATCCAATCCAATCCAAT+CGG + chr2_1:79903109-79903128 Msa0228220:five_prime_UTR 40.0%
CAATCCAATCCAATCCAATC+GGG + chr2_1:79903110-79903129 Msa0228220:five_prime_UTR 40.0%
GTGAAGAAGAAGAAGCGATT+AGG - chr2_1:79903192-79903211 None:intergenic 40.0%
TTGCAGGTCGATTACTCTAA+TGG + chr2_1:79903258-79903277 Msa0228220:exon 40.0%
TGCAGGTCGATTACTCTAAT+GGG + chr2_1:79903259-79903278 Msa0228220:exon 40.0%
ACACTCCAAACATTCCTCTA+AGG + chr2_1:79903309-79903328 Msa0228220:CDS 40.0%
GTTGTGAACTTAACTGACAC+TGG + chr2_1:79903517-79903536 Msa0228220:intron 40.0%
!! TTTTGTCCCTTTGTTGTGTG+AGG + chr2_1:79903583-79903602 Msa0228220:intron 40.0%
CAATCACCTCACACAACAAA+GGG - chr2_1:79903592-79903611 None:intergenic 40.0%
AAGCTACCGTGGAGAATTTA+TGG - chr2_1:79903756-79903775 None:intergenic 40.0%
AGCTAGAAAGAGAAACCTCA+CGG - chr2_1:79904073-79904092 None:intergenic 40.0%
!! TGTCCTCTAGTTCTGAAGAT+AGG + chr2_1:79904129-79904148 Msa0228220:CDS 40.0%
AGACCTATCTTCAGAACTAG+AGG - chr2_1:79904135-79904154 None:intergenic 40.0%
TGTGAAAAGTCGTAAGAAGC+GGG + chr2_1:79904190-79904209 Msa0228220:CDS 40.0%
GTATGCCAGGAAGAGAAAAA+AGG + chr2_1:79904256-79904275 Msa0228220:CDS 40.0%
!!! CTTCACCTTTTTTCTCTTCC+TGG - chr2_1:79904264-79904283 None:intergenic 40.0%
GGAAGAGAAAAAAGGTGAAG+AGG + chr2_1:79904264-79904283 Msa0228220:CDS 40.0%
AGATAAGCATGATGAGACGA+AGG + chr2_1:79904289-79904308 Msa0228220:CDS 40.0%
GAAATCGCGTAGGAAGAAAA+AGG + chr2_1:79904313-79904332 Msa0228220:CDS 40.0%
GAGAGAAGCAAGTGTTAGTT+CGG + chr2_1:79904340-79904359 Msa0228220:CDS 40.0%
CTTAGAAGAGACATTCAGGT+TGG + chr2_1:79904374-79904393 Msa0228220:CDS 40.0%
GTGCAAAGAGTGGTAGATAT+AGG + chr2_1:79904492-79904511 Msa0228220:CDS 40.0%
AGTAATGACAGTAACGATGG+GGG + chr2_1:79904713-79904732 Msa0228220:CDS 40.0%
GAAAACTTACGAAAGTTCCG+AGG + chr2_1:79904974-79904993 Msa0228220:CDS 40.0%
! GGCAAACTAGTTTCTTCTAC+AGG - chr2_1:79905148-79905167 None:intergenic 40.0%
! AAGAAACTAGTTTGCCGGTT+AGG + chr2_1:79905152-79905171 Msa0228220:CDS 40.0%
GTTGCTTATCCAAGAAACAG+TGG + chr2_1:79905187-79905206 Msa0228220:CDS 40.0%
CAGTGGAAGAGATTTGAACT+TGG + chr2_1:79905204-79905223 Msa0228220:CDS 40.0%
! TCTGCATCAGTAACCTTTTC+CGG - chr2_1:79905274-79905293 None:intergenic 40.0%
TGAATCCAAATTGCTCGTCA+TGG - chr2_1:79905332-79905351 None:intergenic 40.0%
AATCATGGCAAGGTTCAGAT+GGG - chr2_1:79905357-79905376 None:intergenic 40.0%
!! CTTTGAAGTGAATCATGGCA+AGG - chr2_1:79905367-79905386 None:intergenic 40.0%
!! AGCGACTTTGAAGTGAATCA+TGG - chr2_1:79905372-79905391 None:intergenic 40.0%
! AACTTTTCACGAGGAAGTTC+GGG - chr2_1:79905418-79905437 None:intergenic 40.0%
! CAACTTTTCACGAGGAAGTT+CGG - chr2_1:79905419-79905438 None:intergenic 40.0%
! GGGTCACGTACAGTATTTTA+TGG - chr2_1:79905929-79905948 None:intergenic 40.0%
AAAAGGACAGGGAAAGGAAT+GGG - chr2_1:79905949-79905968 None:intergenic 40.0%
AAAAAGGACAGGGAAAGGAA+TGG - chr2_1:79905950-79905969 None:intergenic 40.0%
! GAATGTTCAGGTTAGCTACA+AGG + chr2_1:79905992-79906011 Msa0228220:intron 40.0%
GAATAATGGCGCAACCATAT+GGG + chr2_1:79906202-79906221 Msa0228220:three_prime_UTR 40.0%
! GTAGACCCTTCAATGTTTTC+TGG + chr2_1:79906241-79906260 Msa0228220:three_prime_UTR 40.0%
GTTCCACCAGAAAACATTGA+AGG - chr2_1:79906250-79906269 None:intergenic 40.0%
TCACAAAGCAGACTTACACA+AGG - chr2_1:79906280-79906299 None:intergenic 40.0%
GTTCGATTGATAAGATCGGA+TGG + chr2_1:79906373-79906392 Msa0228220:three_prime_UTR 40.0%
!! ACAGGCTTTGAGTAACTTCA+AGG + chr2_1:79906463-79906482 Msa0228220:three_prime_UTR 40.0%
!! CAGGCTTTGAGTAACTTCAA+GGG + chr2_1:79906464-79906483 Msa0228220:three_prime_UTR 40.0%
TTACTTCCCTGAGTATGGAT+GGG + chr2_1:79906487-79906506 Msa0228220:three_prime_UTR 40.0%
! TTTGGGACGTATGTTAGATG+AGG - chr2_1:79906581-79906600 None:intergenic 40.0%
! GATTGGATTGGATTGGGGTT+AGG - chr2_1:79903105-79903124 None:intergenic 45.0%
! CCGATTGGATTGGATTGGAT+TGG - chr2_1:79903112-79903131 None:intergenic 45.0%
! AGAACCCGATTGGATTGGAT+TGG - chr2_1:79903117-79903136 None:intergenic 45.0%
GAAAGAGAACCCGATTGGAT+TGG - chr2_1:79903122-79903141 None:intergenic 45.0%
GCAGGTCGATTACTCTAATG+GGG + chr2_1:79903260-79903279 Msa0228220:exon 45.0%
CCAATCACCTCACACAACAA+AGG - chr2_1:79903593-79903612 None:intergenic 45.0%
! CCTTTGTTGTGTGAGGTGAT+TGG + chr2_1:79903590-79903609 Msa0228220:intron 45.0%
GTTCTCTCAAACCGTCACAA+GGG - chr2_1:79903685-79903704 None:intergenic 45.0%
AGTTCTCTCAAACCGTCACA+AGG - chr2_1:79903686-79903705 None:intergenic 45.0%
GTGGTTTAGACTAAGGGAAG+TGG + chr2_1:79904005-79904024 Msa0228220:intron 45.0%
! CAACGATGTGTCCATGCTTT+TGG - chr2_1:79904111-79904130 None:intergenic 45.0%
! AAAGTCGTAAGAAGCGGGTT+CGG + chr2_1:79904195-79904214 Msa0228220:CDS 45.0%
TGGGCTTAGAAGAGACATTC+AGG + chr2_1:79904370-79904389 Msa0228220:CDS 45.0%
ACAGTGAATATGAGAGCTCC+AGG + chr2_1:79904414-79904433 Msa0228220:CDS 45.0%
CAGTGAATATGAGAGCTCCA+GGG + chr2_1:79904415-79904434 Msa0228220:CDS 45.0%
AGTGAATATGAGAGCTCCAG+GGG + chr2_1:79904416-79904435 Msa0228220:CDS 45.0%
CTTTCTTTCTGTTCTTCCCC+TGG - chr2_1:79904435-79904454 None:intergenic 45.0%
CAGGGGAAGAACAGAAAGAA+AGG + chr2_1:79904433-79904452 Msa0228220:CDS 45.0%
! AGAAGTGGAAGTGCAAAGAG+TGG + chr2_1:79904482-79904501 Msa0228220:CDS 45.0%
TCATCATGGGGACTACTACA+AGG - chr2_1:79904533-79904552 None:intergenic 45.0%
ACGTGTCCGAGAACAAATCT+AGG + chr2_1:79904582-79904601 Msa0228220:CDS 45.0%
TGTCCGAGAACAAATCTAGG+TGG + chr2_1:79904585-79904604 Msa0228220:CDS 45.0%
TACACATGATGCACCAGAAG+AGG + chr2_1:79904760-79904779 Msa0228220:CDS 45.0%
ATGCACCAGAAGAGGAATTG+AGG + chr2_1:79904768-79904787 Msa0228220:CDS 45.0%
TGCACCAGAAGAGGAATTGA+GGG + chr2_1:79904769-79904788 Msa0228220:CDS 45.0%
! CAGAAGTTTTTACGGTCGAC+TGG - chr2_1:79905006-79905025 None:intergenic 45.0%
CAGTAACTGGTTGCTTCACT+TGG - chr2_1:79905051-79905070 None:intergenic 45.0%
GCAACCAGTTACTGATAACC+AGG + chr2_1:79905057-79905076 Msa0228220:CDS 45.0%
! AAACTAGTTTGCCGGTTAGG+AGG + chr2_1:79905155-79905174 Msa0228220:CDS 45.0%
ATCATGGCAAGGTTCAGATG+GGG - chr2_1:79905356-79905375 None:intergenic 45.0%
GAATCATGGCAAGGTTCAGA+TGG - chr2_1:79905358-79905377 None:intergenic 45.0%
CGAACTTCCTCGTGAAAAGT+TGG + chr2_1:79905417-79905436 Msa0228220:CDS 45.0%
! TCCTCGTGAAAAGTTGGTCT+TGG + chr2_1:79905423-79905442 Msa0228220:CDS 45.0%
GGGGATAAACCACCTATTCA+TGG + chr2_1:79905511-79905530 Msa0228220:CDS 45.0%
TGAGTGAGGCTGATGAAGAA+AGG + chr2_1:79905647-79905666 Msa0228220:CDS 45.0%
GGCTGATGAAGAAAGGAATG+CGG + chr2_1:79905654-79905673 Msa0228220:CDS 45.0%
TTTGCTCAAACTGAGAGCTC+TGG - chr2_1:79905813-79905832 None:intergenic 45.0%
! CTTAAGTTGCCTTCTAGCCA+AGG - chr2_1:79906042-79906061 None:intergenic 45.0%
CGAATAATGGCGCAACCATA+TGG + chr2_1:79906201-79906220 Msa0228220:three_prime_UTR 45.0%
! CTCTTCTTTGGGTTCCCATA+TGG - chr2_1:79906219-79906238 None:intergenic 45.0%
AGGGTCTACTGCTCTTCTTT+GGG - chr2_1:79906230-79906249 None:intergenic 45.0%
AAGGGTCTACTGCTCTTCTT+TGG - chr2_1:79906231-79906250 None:intergenic 45.0%
! GACCCTTCAATGTTTTCTGG+TGG + chr2_1:79906244-79906263 Msa0228220:three_prime_UTR 45.0%
! GAGCAAGTATGGATTGCATG+CGG + chr2_1:79906319-79906338 Msa0228220:three_prime_UTR 45.0%
TGTCACAGCTGATAGTTGAC+AGG + chr2_1:79906445-79906464 Msa0228220:three_prime_UTR 45.0%
AAGGGTTACTTCCCTGAGTA+TGG + chr2_1:79906482-79906501 Msa0228220:three_prime_UTR 45.0%
GTTACTTCCCTGAGTATGGA+TGG + chr2_1:79906486-79906505 Msa0228220:three_prime_UTR 45.0%
!!! TCATATTTATTATTTTTAAT+CGG + chr2_1:79903380-79903399 Msa0228220:intron 5.0%
GCGAAGAAAGAGAACCCGAT+TGG - chr2_1:79903127-79903146 None:intergenic 50.0%
AAAGAGAAACCTCACGGCGA+CGG - chr2_1:79904067-79904086 None:intergenic 50.0%
! ATACAGCTCTGACAGCAGTG+AGG + chr2_1:79904226-79904245 Msa0228220:CDS 50.0%
GTGAGGACTCTTTGTATGCC+AGG + chr2_1:79904243-79904262 Msa0228220:CDS 50.0%
AGACGAAGGAGAAATCGCGT+AGG + chr2_1:79904303-79904322 Msa0228220:CDS 50.0%
! AGTGTTAGTTCGGTGAGCAG+TGG + chr2_1:79904350-79904369 Msa0228220:CDS 50.0%
! GTGTTAGTTCGGTGAGCAGT+GGG + chr2_1:79904351-79904370 Msa0228220:CDS 50.0%
AGAAGATCGAGGGGAAGAAG+TGG + chr2_1:79904467-79904486 Msa0228220:CDS 50.0%
! TAACGATGGGGGCACAAAGA+GGG + chr2_1:79904724-79904743 Msa0228220:CDS 50.0%
TCAGCCCTCAATTCCTCTTC+TGG - chr2_1:79904776-79904795 None:intergenic 50.0%
AGAAGAGGAATTGAGGGCTG+AGG + chr2_1:79904775-79904794 Msa0228220:CDS 50.0%
! AGTAGCCTTGAAGTTCGTGC+TGG + chr2_1:79904857-79904876 Msa0228220:CDS 50.0%
! GTAGCCTTGAAGTTCGTGCT+GGG + chr2_1:79904858-79904877 Msa0228220:CDS 50.0%
TTGTCCCAGCACGAACTTCA+AGG - chr2_1:79904865-79904884 None:intergenic 50.0%
! GATTCAGATGGCTTGTGCAC+CGG + chr2_1:79905252-79905271 Msa0228220:CDS 50.0%
!! CATGGTTGTTGGCTTCAGAG+AGG - chr2_1:79905395-79905414 None:intergenic 50.0%
! GCCAAGACCAACTTTTCACG+AGG - chr2_1:79905427-79905446 None:intergenic 50.0%
!! ATTAGAGGAGTGCCTTCTGC+TGG + chr2_1:79905490-79905509 Msa0228220:CDS 50.0%
!! TTAGAGGAGTGCCTTCTGCT+GGG + chr2_1:79905491-79905510 Msa0228220:CDS 50.0%
ACCTTCCAATGCACAGTTGC+CGG + chr2_1:79905624-79905643 Msa0228220:CDS 50.0%
TCTTCATCAGCCTCACTCAC+CGG - chr2_1:79905646-79905665 None:intergenic 50.0%
ACGAGTCATGCAATGCTGCA+GGG + chr2_1:79905731-79905750 Msa0228220:CDS 50.0%
CAATGCTGCAGGGATGTTGA+CGG + chr2_1:79905741-79905760 Msa0228220:CDS 50.0%
AATGCTGCAGGGATGTTGAC+GGG + chr2_1:79905742-79905761 Msa0228220:CDS 50.0%
! CTCAAACTGAGAGCTCTGGT+TGG - chr2_1:79905809-79905828 None:intergenic 50.0%
ACAATGACTGTGATGAGGGG+TGG + chr2_1:79905835-79905854 Msa0228220:CDS 50.0%
TGTGATGAGGGGTGGTGAAT+TGG + chr2_1:79905843-79905862 Msa0228220:CDS 50.0%
! CCAAGGCAGGGGTTTTCTTA+GGG - chr2_1:79906025-79906044 None:intergenic 50.0%
CATGCGGTCAGACAATCACA+CGG + chr2_1:79906335-79906354 Msa0228220:three_prime_UTR 50.0%
CAATCACACGGTTGCAGACT+TGG + chr2_1:79906347-79906366 Msa0228220:three_prime_UTR 50.0%
CGTTGACCCATCCATACTCA+GGG - chr2_1:79906496-79906515 None:intergenic 50.0%
ACGTTGACCCATCCATACTC+AGG - chr2_1:79906497-79906516 None:intergenic 50.0%
! GTAACGATGGGGGCACAAAG+AGG + chr2_1:79904723-79904742 Msa0228220:CDS 55.0%
TTGAGGGCTGAGGATGTGAC+AGG + chr2_1:79904785-79904804 Msa0228220:CDS 55.0%
! GATGGCTTGTGCACCGGAAA+AGG + chr2_1:79905258-79905277 Msa0228220:CDS 55.0%
GGAAGTTCGGGCATGGTTGT+TGG - chr2_1:79905406-79905425 None:intergenic 55.0%
TTCACGAGGAAGTTCGGGCA+TGG - chr2_1:79905413-79905432 None:intergenic 55.0%
!! TAGAGGAGTGCCTTCTGCTG+GGG + chr2_1:79905492-79905511 Msa0228220:CDS 55.0%
GGTGGTTTATCCCCAGCAGA+AGG - chr2_1:79905505-79905524 None:intergenic 55.0%
ACCGGCAACTGTGCATTGGA+AGG - chr2_1:79905628-79905647 None:intergenic 55.0%
ACTCACCGGCAACTGTGCAT+TGG - chr2_1:79905632-79905651 None:intergenic 55.0%
GACGAGTCATGCAATGCTGC+AGG + chr2_1:79905730-79905749 Msa0228220:CDS 55.0%
GAGGGGTGGTGAATTGGTAC+AGG + chr2_1:79905849-79905868 Msa0228220:CDS 55.0%
CCCTAAGAAAACCCCTGCCT+TGG + chr2_1:79906022-79906041 Msa0228220:CDS 55.0%
! GCCAAGGCAGGGGTTTTCTT+AGG - chr2_1:79906026-79906045 None:intergenic 55.0%
AAACCCCTGCCTTGGCTAGA+AGG + chr2_1:79906030-79906049 Msa0228220:CDS 55.0%
TTGCCTTCTAGCCAAGGCAG+GGG - chr2_1:79906036-79906055 None:intergenic 55.0%
GTTGCCTTCTAGCCAAGGCA+GGG - chr2_1:79906037-79906056 None:intergenic 55.0%
AGTTGCCTTCTAGCCAAGGC+AGG - chr2_1:79906038-79906057 None:intergenic 55.0%
AAAGAAGGTCCGTCGCCGTG+AGG + chr2_1:79904055-79904074 Msa0228220:CDS 60.0%
! TGGGGGCACAAAGAGGGAGT+TGG + chr2_1:79904730-79904749 Msa0228220:CDS 60.0%
CGGTCGACTGGACTTGACCT+CGG - chr2_1:79904994-79905013 None:intergenic 60.0%
TGCACAGTTGCCGGTGAGTG+AGG + chr2_1:79905633-79905652 Msa0228220:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 79903059 79906735 79903059 ID=Msa0228220;Name=Msa0228220
chr2_1 mRNA 79903059 79906735 79903059 ID=Msa0228220-mRNA-1;Parent=Msa0228220;Name=Msa0228220-mRNA-1;_AED=0.18;_eAED=0.18;_QI=218|1|1|1|1|1|3|668|658
chr2_1 exon 79903059 79903330 79903059 ID=Msa0228220-mRNA-1:exon:24287;Parent=Msa0228220-mRNA-1
chr2_1 exon 79904014 79905870 79904014 ID=Msa0228220-mRNA-1:exon:24288;Parent=Msa0228220-mRNA-1
chr2_1 exon 79906002 79906735 79906002 ID=Msa0228220-mRNA-1:exon:24289;Parent=Msa0228220-mRNA-1
chr2_1 five_prime_UTR 79903059 79903276 79903059 ID=Msa0228220-mRNA-1:five_prime_utr;Parent=Msa0228220-mRNA-1
chr2_1 CDS 79903277 79903330 79903277 ID=Msa0228220-mRNA-1:cds;Parent=Msa0228220-mRNA-1
chr2_1 CDS 79904014 79905870 79904014 ID=Msa0228220-mRNA-1:cds;Parent=Msa0228220-mRNA-1
chr2_1 CDS 79906002 79906067 79906002 ID=Msa0228220-mRNA-1:cds;Parent=Msa0228220-mRNA-1
chr2_1 three_prime_UTR 79906068 79906735 79906068 ID=Msa0228220-mRNA-1:three_prime_utr;Parent=Msa0228220-mRNA-1
Gene Sequence

>Msa0228220

ATGGGGAAATCATCTACTTCACTCAAAAAGAAACACTCCAAACATTCCTCTAAGACTAAGGGAAGTGGCAGAAGTAAGAGTAAGAAACATAAATCAAAGAAGGTCCGTCGCCGTGAGGTTTCTCTTTCTAGCTCAGACTATGATGATTCCAAAAGCATGGACACATCGTTGTCCTCTAGTTCTGAAGATAGGTCTAAAAGAAAAAGAGAGCGGTCTCGCACAAGAAAAGATGTGAAAAGTCGTAAGAAGCGGGTTCGGAGACGTTCATACAGCTCTGACAGCAGTGAGGACTCTTTGTATGCCAGGAAGAGAAAAAAGGTGAAGAGGAAAGATAAGCATGATGAGACGAAGGAGAAATCGCGTAGGAAGAAAAAGGTTAAGAGAGAAGCAAGTGTTAGTTCGGTGAGCAGTGGGCTTAGAAGAGACATTCAGGTTGGGATTGACAGCAATGACGACAGTGAATATGAGAGCTCCAGGGGAAGAACAGAAAGAAAGGAGAAAGACAAAAGAAGATCGAGGGGAAGAAGTGGAAGTGCAAAGAGTGGTAGATATAGGGCTCGAAGTTGTTCTCCTTGTAGTAGTCCCCATGATGAATGTACTTACGAACAGGCTGAAAACAAATACGTGTCCGAGAACAAATCTAGGTGGATTCGATCAGTTATTACTGTTGCAAAAGAGGGTGATGAATTTACGGAATTGATTGGAAATGAAACCAAAGAGGAGATTGTAGATGATCTTGATTACCCTTGTAGAAGTAATGACAGTAACGATGGGGGCACAAAGAGGGAGTTGGATCATCATACACATGATGCACCAGAAGAGGAATTGAGGGCTGAGGATGTGACAGGAATTATGAATACTGATGTTAACTTCACAGAGCCCAAACTTAGAGATATGAGTAGCCTTGAAGTTCGTGCTGGGACAAGTGAATCTAAAAAGGAGGAAACAAATGATGTTTCTGCTGCTAATCTGAATGACGTTGATTTGGAGTCAATTCTAAGACAAAGAGCGTTAGAAAACTTACGAAAGTTCCGAGGTCAAGTCCAGTCGACCGTAAAAACTTCTGAACAGAAAAATAGAATTGTCAGCCAAGTGAAGCAACCAGTTACTGATAACCAGGAATTGGTTCAAGATAAGTCTAATATCAGTAACGTTGCTATAGTGACAAAACTTGATAAGCAAACACCTGTAGAAGAAACTAGTTTGCCGGTTAGGAGGAGAAATTTAGTTGCTTATCCAAGAAACAGTGGAAGAGATTTGAACTTGGATAAAGATTTATCTAGTTCTGTGAAGATTCAGATGGCTTGTGCACCGGAAAAGGTTACTGATGCAGACAGCCGAAACAAAGTAGTCAATGAATCAGCTAATACCATGACGAGCAATTTGGATTCAACCCCATCTGAACCTTGCCATGATTCACTTCAAAGTCGCTCCTCTCTGAAGCCAACAACCATGCCCGAACTTCCTCGTGAAAAGTTGGTCTTGGCAGAAAGTATTAAAAATAAGGGTAGCAATGATAATGTCAAAGACATTAGAGGAGTGCCTTCTGCTGGGGATAAACCACCTATTCATGGATCTACATTTAAGCATAACAACTTGGATAAGGGGCACGATGATGCAAGTGATCACTCTCAGTTTAAATCAAAGCAATCTGATTCACATGAACCTTCCAATGCACAGTTGCCGGTGAGTGAGGCTGATGAAGAAAGGAATGCGGCTAAGATAGTCCAATCTTCAATCCAGAATATTAATAGCAGTGGCAGAGATGTTGACGAGTCATGCAATGCTGCAGGGATGTTGACGGGTTCATCAGTAGAGAATAATTCAGGCAAAGTACTAGACGGATCCAACCAGAGCTCTCAGTTTGAGCAAAAAACAATGACTGTGATGAGGGGTGGTGAATTGGTACAGGTTAGCTACAAGGTCTATATCCCTAAGAAAACCCCTGCCTTGGCTAGAAGGCAACTTAAGCGATGA
Protein sequence

>Msa0228220

MGKSSTSLKKKHSKHSSKTKGSGRSKSKKHKSKKVRRREVSLSSSDYDDSKSMDTSLSSSSEDRSKRKRERSRTRKDVKSRKKRVRRRSYSSDSSEDSLYARKRKKVKRKDKHDETKEKSRRKKKVKREASVSSVSSGLRRDIQVGIDSNDDSEYESSRGRTERKEKDKRRSRGRSGSAKSGRYRARSCSPCSSPHDECTYEQAENKYVSENKSRWIRSVITVAKEGDEFTELIGNETKEEIVDDLDYPCRSNDSNDGGTKRELDHHTHDAPEEELRAEDVTGIMNTDVNFTEPKLRDMSSLEVRAGTSESKKEETNDVSAANLNDVDLESILRQRALENLRKFRGQVQSTVKTSEQKNRIVSQVKQPVTDNQELVQDKSNISNVAIVTKLDKQTPVEETSLPVRRRNLVAYPRNSGRDLNLDKDLSSSVKIQMACAPEKVTDADSRNKVVNESANTMTSNLDSTPSEPCHDSLQSRSSLKPTTMPELPREKLVLAESIKNKGSNDNVKDIRGVPSAGDKPPIHGSTFKHNNLDKGHDDASDHSQFKSKQSDSHEPSNAQLPVSEADEERNAAKIVQSSIQNINSSGRDVDESCNAAGMLTGSSVENNSGKVLDGSNQSSQFEQKTMTVMRGGELVQVSYKVYIPKKTPALARRQLKR*