AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0230170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0230170 MtrunA17_Chr4g0003441 81.542 428 34 4 4 388 63 488 0.0 670
Msa0230170 MtrunA17_Chr1g0149251 88.372 344 12 1 73 388 1 344 0.0 622
Msa0230170 MtrunA17_Chr3g0137891 100.000 163 0 0 73 235 1 163 2.06e-117 340
Msa0230170 MtrunA17_Chr3g0137901 83.889 180 1 1 237 388 1 180 3.09e-101 297
Msa0230170 MtrunA17_Chr2g0299681 39.130 322 187 6 45 365 54 367 6.30e-61 202
Msa0230170 MtrunA17_Chr2g0329931 39.441 322 186 6 45 365 54 367 1.37e-60 201
Msa0230170 MtrunA17_Chr7g0247191 34.054 370 206 8 44 385 162 521 2.38e-60 203
Msa0230170 MtrunA17_Chr7g0247221 32.619 420 229 9 8 385 107 514 5.30e-60 202
Msa0230170 MtrunA17_Chr7g0247181 34.324 370 205 8 44 385 152 511 7.50e-60 202
Msa0230170 MtrunA17_Chr4g0070981 38.820 322 188 6 45 365 54 367 1.54e-59 198
Msa0230170 MtrunA17_Chr8g0342861 38.199 322 190 6 45 365 54 367 1.11e-57 193
Msa0230170 MtrunA17_Chr2g0297261 35.294 323 198 7 45 365 47 360 2.46e-54 184
Msa0230170 MtrunA17_Chr3g0107851 33.233 331 201 7 50 365 132 457 5.52e-51 179
Msa0230170 MtrunA17_Chr7g0236841 33.553 304 195 6 65 365 39 338 5.91e-48 168
Msa0230170 MtrunA17_Chr6g0483491 33.553 304 195 6 65 365 39 338 6.77e-48 168
Msa0230170 MtrunA17_Chr1g0176041 34.848 330 192 7 56 365 174 500 1.39e-46 168
Msa0230170 MtrunA17_Chr7g0271121 33.439 314 190 7 62 364 133 438 1.41e-46 169
Msa0230170 MtrunA17_Chr2g0330401 30.946 349 219 8 34 365 85 428 3.70e-46 165
Msa0230170 MtrunA17_Chr3g0121351 34.731 334 188 8 56 365 165 492 1.03e-45 166
Msa0230170 MtrunA17_Chr4g0063551 34.234 333 193 7 56 365 160 489 2.37e-45 165
Msa0230170 MtrunA17_Chr1g0193491 31.529 314 197 9 62 364 141 447 9.12e-45 163
Msa0230170 MtrunA17_Chr4g0076491 32.102 352 194 8 45 365 300 637 2.20e-44 163
Msa0230170 MtrunA17_Chr6g0449741 31.412 347 201 9 45 365 262 597 2.87e-42 157
Msa0230170 MtrunA17_Chr3g0095031 31.129 363 213 12 24 364 73 420 2.77e-41 152
Msa0230170 MtrunA17_Chr2g0300291 31.661 319 202 9 57 365 162 474 1.10e-40 153
Msa0230170 MtrunA17_Chr2g0310581 31.746 315 203 7 58 365 75 384 1.20e-40 150
Msa0230170 MtrunA17_Chr3g0098121 31.975 319 200 10 57 365 173 484 6.05e-40 150
Msa0230170 MtrunA17_Chr5g0442191 32.012 328 174 12 62 364 108 411 1.59e-39 148
Msa0230170 MtrunA17_Chr6g0449911 29.885 348 223 9 34 365 154 496 2.25e-39 149
Msa0230170 MtrunA17_Chr2g0293631 30.982 326 207 10 48 365 512 827 1.12e-37 145
Msa0230170 MtrunA17_Chr7g0270131 29.338 317 211 7 57 365 253 564 1.16e-37 144
Msa0230170 MtrunA17_Chr1g0200181 29.379 354 224 8 34 365 134 483 1.04e-36 140
Msa0230170 MtrunA17_Chr3g0137881 98.387 62 1 0 4 65 1 62 1.86e-36 127
Msa0230170 MtrunA17_Chr4g0040761 30.909 330 211 12 43 365 30 349 1.05e-35 139
Msa0230170 MtrunA17_Chr3g0114081 27.964 329 212 5 61 365 41 368 9.08e-34 132
Msa0230170 MtrunA17_Chr7g0263771 30.841 321 205 9 50 365 151 459 1.23e-33 132
Msa0230170 MtrunA17_Chr1g0157691 28.249 354 228 8 34 365 136 485 1.87e-33 131
Msa0230170 MtrunA17_Chr2g0277821 28.527 319 213 7 57 365 525 838 2.09e-33 132
Msa0230170 MtrunA17_Chr8g0347161 28.824 340 216 10 45 365 115 447 4.08e-33 130
Msa0230170 MtrunA17_Chr4g0058591 26.301 346 226 8 13 341 177 510 5.97e-33 129
Msa0230170 MtrunA17_Chr8g0347171 29.118 340 215 10 45 365 173 505 1.06e-32 129
Msa0230170 MtrunA17_Chr8g0347151 29.412 340 214 9 45 365 214 546 1.39e-32 129
Msa0230170 MtrunA17_Chr2g0307471 28.344 314 212 7 61 365 116 425 7.86e-32 126
Msa0230170 MtrunA17_Chr7g0236831 27.990 393 204 14 45 364 176 562 4.05e-31 125
Msa0230170 MtrunA17_Chr5g0409981 29.518 332 197 8 57 365 123 440 5.73e-31 123
Msa0230170 MtrunA17_Chr4g0062301 28.025 314 214 8 61 365 122 432 1.57e-30 122
Msa0230170 MtrunA17_Chr1g0179761 27.174 368 206 11 48 365 78 433 2.12e-30 121
Msa0230170 MtrunA17_Chr5g0443991 28.011 357 227 12 24 365 70 411 4.42e-30 122
Msa0230170 MtrunA17_Chr6g0475251 29.846 325 194 12 61 364 128 439 1.43e-29 120
Msa0230170 MtrunA17_Chr8g0386451 29.688 320 203 8 65 365 317 633 2.82e-29 119
Msa0230170 MtrunA17_Chr1g0169331 28.933 356 213 11 47 368 6 355 2.83e-28 114
Msa0230170 MtrunA17_Chr6g0461751 28.793 323 205 9 58 365 162 474 4.21e-28 115
Msa0230170 MtrunA17_Chr2g0309551 25.549 364 213 5 58 364 131 493 6.49e-28 115
Msa0230170 MtrunA17_Chr8g0342851 29.450 309 185 8 64 369 1 279 1.56e-27 110
Msa0230170 MtrunA17_Chr1g0204391 28.395 324 194 10 72 364 80 396 1.00e-26 112
Msa0230170 MtrunA17_Chr4g0034411 28.254 315 203 11 65 365 105 410 3.14e-26 110
Msa0230170 MtrunA17_Chr4g0029191 26.786 392 194 16 58 365 67 449 4.21e-26 110
Msa0230170 MtrunA17_Chr2g0301281 26.020 392 197 16 58 365 64 446 1.45e-25 108
Msa0230170 MtrunA17_Chr5g0429221 26.557 305 216 6 66 365 33 334 2.93e-25 106
Msa0230170 MtrunA17_Chr6g0466611 26.488 336 208 12 58 365 164 488 2.83e-24 105
Msa0230170 MtrunA17_Chr3g0145781 27.350 351 204 9 55 365 151 490 3.03e-23 101
Msa0230170 MtrunA17_Chr4g0039471 33.523 176 111 4 57 229 244 416 2.63e-20 92.0
Msa0230170 MtrunA17_Chr1g0149261 90.000 40 4 0 25 64 22 61 3.78e-18 79.0
Msa0230170 MtrunA17_Chr4g0062321 29.167 192 132 4 158 346 43 233 2.36e-17 80.9
Msa0230170 MtrunA17_Chr4g0025141 30.952 168 100 5 213 365 15 181 2.56e-16 77.8
Msa0230170 MtrunA17_Chr8g0349951 36.434 129 78 4 58 184 32 158 8.29e-15 71.6
Msa0230170 MtrunA17_Chr1g0192021 23.770 366 211 10 57 365 47 401 2.89e-14 74.3
Msa0230170 MtrunA17_Chr4g0025131 28.182 220 125 8 6 197 4 218 3.71e-14 72.4
Msa0230170 MtrunA17_Chr1g0155201 27.570 214 136 7 156 365 12 210 7.60e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0230170 AT5G11170.1 82.020 406 30 3 25 388 23 427 0.0 672
Msa0230170 AT5G11200.1 82.020 406 30 3 25 388 23 427 0.0 672
Msa0230170 AT5G11200.3 74.497 447 30 4 25 388 23 468 0.0 652
Msa0230170 AT5G11170.2 84.302 344 26 1 73 388 1 344 0.0 597
Msa0230170 AT5G11200.2 64.731 465 62 7 25 388 23 486 0.0 563
Msa0230170 AT2G45810.1 37.267 322 191 6 45 365 168 479 7.31e-64 213
Msa0230170 AT4G00660.1 33.882 425 220 10 9 385 92 503 5.57e-63 210
Msa0230170 AT4G00660.2 33.882 425 220 10 9 385 92 503 5.57e-63 210
Msa0230170 AT3G61240.2 33.167 401 213 9 27 385 109 496 2.69e-62 208
Msa0230170 AT3G61240.1 33.167 401 213 9 27 385 109 496 2.69e-62 208
Msa0230170 AT1G72730.1 36.685 368 208 8 2 365 22 368 9.71e-61 202
Msa0230170 AT3G13920.1 38.820 322 188 6 45 365 53 366 4.73e-60 200
Msa0230170 AT3G13920.2 38.820 322 188 6 45 365 53 366 6.93e-60 199
Msa0230170 AT3G13920.3 38.820 322 188 6 45 365 43 356 7.28e-60 199
Msa0230170 AT3G13920.4 38.739 333 189 7 43 365 34 361 8.61e-60 199
Msa0230170 AT3G13920.5 38.820 322 188 6 45 365 57 370 8.78e-60 199
Msa0230170 AT1G54270.1 38.199 322 190 6 45 365 53 366 6.90e-58 194
Msa0230170 AT1G54270.2 38.138 333 191 7 43 365 34 361 1.80e-57 193
Msa0230170 AT3G19760.1 34.985 323 199 7 45 365 49 362 1.76e-54 185
Msa0230170 AT1G51380.1 34.969 326 195 9 45 365 36 349 5.52e-52 178
Msa0230170 AT5G60990.1 32.399 321 200 7 58 365 32 348 4.45e-46 164
Msa0230170 AT1G55150.1 32.386 352 210 10 34 365 89 432 5.39e-46 165
Msa0230170 AT1G55150.2 32.386 352 210 10 34 365 114 457 9.81e-46 165
Msa0230170 AT5G26742.3 31.746 315 198 6 61 364 36 344 4.02e-45 165
Msa0230170 AT5G26742.1 31.847 314 197 6 62 364 130 437 8.64e-45 165
Msa0230170 AT5G26742.2 31.847 314 197 6 62 364 130 437 8.69e-45 165
Msa0230170 AT3G53110.1 30.484 351 206 10 48 365 90 435 1.14e-43 159
Msa0230170 AT1G16280.1 33.228 316 199 7 57 365 80 390 2.62e-43 157
Msa0230170 AT2G33730.1 31.214 346 205 7 45 365 327 664 3.96e-43 160
Msa0230170 AT3G58570.1 35.152 330 191 8 56 365 167 493 2.98e-42 157
Msa0230170 AT5G63120.2 30.312 320 208 8 55 365 185 498 5.67e-42 155
Msa0230170 AT4G16630.1 31.646 316 205 8 57 365 189 500 8.81e-42 156
Msa0230170 AT1G28180.1 33.119 311 191 8 65 365 3 306 7.28e-41 148
Msa0230170 AT3G22330.1 30.267 337 197 10 56 365 111 436 1.42e-40 152
Msa0230170 AT3G22310.2 30.838 334 205 7 53 365 120 448 1.95e-40 151
Msa0230170 AT3G22310.1 30.838 334 205 7 53 365 120 448 2.26e-40 151
Msa0230170 AT3G58510.1 33.131 329 197 8 56 365 172 496 2.75e-40 151
Msa0230170 AT3G58510.3 33.131 329 197 8 56 365 172 496 2.75e-40 151
Msa0230170 AT3G58510.2 33.131 329 197 8 56 365 172 496 2.75e-40 151
Msa0230170 AT3G01540.1 30.372 349 220 11 34 365 148 490 1.11e-39 149
Msa0230170 AT3G01540.4 30.372 349 220 11 34 365 148 490 1.28e-39 149
Msa0230170 AT3G01540.2 30.372 349 220 11 34 365 148 490 1.28e-39 149
Msa0230170 AT3G01540.3 30.372 349 220 11 34 365 148 490 1.28e-39 149
Msa0230170 AT2G47330.1 30.915 317 206 7 57 365 250 561 2.36e-39 149
Msa0230170 AT2G42520.2 32.931 331 197 9 56 365 180 506 4.21e-39 148
Msa0230170 AT2G42520.1 32.931 331 197 9 56 365 180 506 4.21e-39 148
Msa0230170 AT2G42520.3 32.931 331 197 9 56 365 180 506 4.21e-39 148
Msa0230170 AT5G14610.7 30.887 327 210 10 46 365 45 362 2.43e-38 144
Msa0230170 AT5G14610.3 30.887 327 210 10 46 365 45 362 2.43e-38 144
Msa0230170 AT5G14610.5 30.887 327 210 10 46 365 184 501 3.39e-38 145
Msa0230170 AT5G14610.6 30.887 327 210 10 46 365 176 493 3.51e-38 145
Msa0230170 AT5G14610.2 30.887 327 210 10 46 365 176 493 3.64e-38 145
Msa0230170 AT5G14610.1 30.887 327 210 10 46 365 244 561 7.85e-38 145
Msa0230170 AT1G31970.1 31.677 322 204 7 57 365 136 454 1.48e-36 140
Msa0230170 AT3G06480.1 28.818 347 228 7 34 365 425 767 2.90e-36 141
Msa0230170 AT1G20920.2 28.329 353 227 9 33 365 180 526 6.77e-36 139
Msa0230170 AT1G20920.4 28.329 353 227 9 33 365 518 864 3.75e-35 137
Msa0230170 AT1G20920.6 28.329 353 227 9 33 365 518 864 3.75e-35 137
Msa0230170 AT1G20920.3 28.329 353 227 9 33 365 518 864 3.75e-35 137
Msa0230170 AT1G20920.7 28.329 353 227 9 33 365 518 864 3.75e-35 137
Msa0230170 AT1G20920.5 28.329 353 227 9 33 365 518 864 3.75e-35 137
Msa0230170 AT1G20920.1 28.329 353 227 9 33 365 518 864 3.75e-35 137
Msa0230170 AT1G71370.1 29.063 320 208 7 61 365 42 357 4.04e-35 136
Msa0230170 AT5G51280.1 28.704 324 214 7 55 365 166 485 4.80e-35 136
Msa0230170 AT4G33370.1 30.556 324 208 7 55 365 117 436 2.00e-34 134
Msa0230170 AT1G51380.2 35.246 244 147 7 45 286 36 270 1.40e-33 126
Msa0230170 AT5G63120.3 30.000 300 193 9 57 347 187 478 2.11e-33 130
Msa0230170 AT5G63120.4 30.000 300 193 9 57 347 187 478 2.11e-33 130
Msa0230170 AT5G63120.5 30.000 300 193 9 57 347 187 478 2.11e-33 130
Msa0230170 AT5G63120.1 29.932 294 191 8 57 341 187 474 2.56e-33 130
Msa0230170 AT1G77030.1 29.618 314 210 10 58 365 51 359 1.07e-32 130
Msa0230170 AT5G63630.1 28.213 319 209 6 65 365 84 400 1.66e-32 128
Msa0230170 AT5G63630.2 28.213 319 209 6 65 365 278 594 5.44e-32 128
Msa0230170 AT3G18600.1 28.754 313 210 9 61 365 115 422 8.42e-32 127
Msa0230170 AT5G65900.1 29.846 325 192 12 61 365 180 488 1.33e-31 126
Msa0230170 AT5G08620.1 27.729 339 221 7 45 365 94 426 2.87e-31 125
Msa0230170 AT5G05450.1 26.748 329 213 7 61 365 42 366 6.12e-31 124
Msa0230170 AT5G08610.1 27.671 365 230 7 33 365 366 728 7.30e-31 125
Msa0230170 AT5G14610.4 30.476 315 201 11 46 353 184 487 1.64e-30 122
Msa0230170 AT5G62190.1 31.494 308 189 10 72 364 133 433 4.11e-30 122
Msa0230170 AT3G16840.1 29.948 384 194 9 53 364 209 589 6.71e-30 122
Msa0230170 AT3G16840.2 29.948 384 194 9 53 364 210 590 6.91e-30 122
Msa0230170 AT3G06480.2 27.711 332 221 7 34 350 425 752 4.22e-29 119
Msa0230170 AT3G02065.1 28.571 315 199 9 65 363 3 307 9.65e-29 115
Msa0230170 AT3G09720.2 29.254 335 210 13 42 365 150 468 1.34e-28 117
Msa0230170 AT3G09720.1 29.254 335 210 13 42 365 150 468 1.34e-28 117
Msa0230170 AT3G09620.1 28.612 353 197 12 33 365 385 702 2.40e-28 117
Msa0230170 AT3G09620.2 28.612 353 197 12 33 365 386 703 2.79e-28 117
Msa0230170 AT1G12770.2 24.324 370 223 6 52 365 127 495 3.46e-28 116
Msa0230170 AT1G12770.1 24.324 370 223 6 52 365 127 495 3.46e-28 116
Msa0230170 AT3G02065.3 28.144 334 210 11 46 363 125 444 3.84e-28 115
Msa0230170 AT3G02065.2 28.144 334 210 11 46 363 125 444 3.84e-28 115
Msa0230170 AT1G63250.1 27.879 330 217 7 55 365 348 675 6.62e-27 113
Msa0230170 AT5G54910.1 27.545 334 213 12 61 376 97 419 1.58e-25 108
Msa0230170 AT1G51380.4 33.641 217 134 6 45 259 36 244 5.44e-25 103
Msa0230170 AT1G51380.3 33.641 217 134 6 45 259 36 244 7.97e-25 103
Msa0230170 AT4G09730.1 27.164 335 207 11 58 365 135 459 1.84e-24 105
Msa0230170 AT2G07750.1 27.760 317 200 9 72 365 412 722 3.94e-24 105
Msa0230170 AT2G40700.1 25.700 393 199 13 58 365 54 438 1.44e-22 100
Msa0230170 AT4G15850.1 26.271 354 198 10 74 365 74 426 7.53e-19 88.6
Msa0230170 AT1G71280.2 28.622 283 159 12 74 343 56 308 1.20e-18 86.7
Msa0230170 AT4G34910.1 24.791 359 218 9 57 365 68 424 1.85e-18 87.8
Msa0230170 AT5G19210.2 23.547 327 217 7 66 364 107 428 3.25e-18 86.7
Msa0230170 AT1G71280.1 28.378 296 169 12 61 343 43 308 3.25e-18 86.7
Msa0230170 AT3G06980.1 24.277 346 216 8 57 365 396 732 7.25e-18 86.3

Find 117 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTCTTGTATACTTTAAT+AGG 0.207564 2_2:-2005083 Msa0230170:three_prime_UTR
CAGCAGATTGATCCTGTTCC+AGG 0.258533 2_2:-2008880 Msa0230170:CDS
TTCTCAAACCAGAGCTTCTT+CGG 0.267756 2_2:-2010257 Msa0230170:CDS
TATCAAATCATTCATGATTT+CGG 0.280084 2_2:-2004977 Msa0230170:three_prime_UTR
ATAAAACAAACCTTTCTTCT+TGG 0.281030 2_2:+2007322 None:intergenic
ATCATAGTGGATATTGCTTT+GGG 0.302530 2_2:-2005352 Msa0230170:exon
TCCTCGTAAGTTTCGTCCTT+TGG 0.307307 2_2:+2010520 None:intergenic
CATCATAGTGGATATTGCTT+TGG 0.320279 2_2:-2005353 Msa0230170:exon
TAAAACAAACCTTTCTTCTT+GGG 0.342819 2_2:+2007323 None:intergenic
GACTTTAGCTCCGTTGGTAT+CGG 0.343036 2_2:+2010459 None:intergenic
TTTGTTCTGAAGTGTACTTT+TGG 0.361228 2_2:-2004941 Msa0230170:three_prime_UTR
GAAGCCAAGTTAACCCTTCA+TGG 0.374844 2_2:-2007631 Msa0230170:CDS
GTAATTTGTCAAGCTAAATC+TGG 0.375081 2_2:-2008940 Msa0230170:CDS
GATTCTTGTAGCTACAGATT+TGG 0.387454 2_2:-2006477 Msa0230170:CDS
GGGGCAACACTTGGTCCGTT+TGG 0.390379 2_2:-2005332 Msa0230170:three_prime_UTR
TATGTTGGAATTCACAGTTC+AGG 0.397914 2_2:-2010294 Msa0230170:CDS
TCTCAAACCAGAGCTTCTTC+GGG 0.401740 2_2:-2010256 Msa0230170:CDS
GCCAATGCTAGTATTCTTCC+AGG 0.402281 2_2:+2008588 None:intergenic
TGTTAGTAGAGCAGCTGAGC+TGG 0.405799 2_2:-2007400 Msa0230170:CDS
CAAATTGTTGTTGGAACGCC+TGG 0.413036 2_2:-2008606 Msa0230170:CDS
CGGTGATGCTGTTGTTGAAC+TGG 0.416246 2_2:-2005110 Msa0230170:three_prime_UTR
ACCATCTATTGCCAGATAAT+GGG 0.420328 2_2:-2010547 Msa0230170:intron
GTTTCAAGGAGGGGCATACT+AGG 0.426560 2_2:-2006499 Msa0230170:CDS
TTGATAGAAATGTGAGGAAA+AGG 0.428212 2_2:+2004994 None:intergenic
CCAGAGTGAATGCATATAGA+TGG 0.428290 2_2:+2007351 None:intergenic
GTGTTAAACATTCTGTATGA+TGG 0.430791 2_2:-2005197 Msa0230170:three_prime_UTR
TAACAACTTGGTTGAAGTCT+AGG 0.431244 2_2:+2007436 None:intergenic
GCAGAAACTTGGCCTGGAAC+AGG 0.433044 2_2:+2008868 None:intergenic
AAGTAAGTGTCTGCAGAATC+AGG 0.433468 2_2:+2006401 None:intergenic
ACTTTAGCTCCGTTGGTATC+GGG 0.446549 2_2:+2010460 None:intergenic
TATTGCTTTGGGGCAACACT+TGG 0.446693 2_2:-2005341 Msa0230170:three_prime_UTR
ACCCTCATCTACTGGATTTG+TGG 0.452586 2_2:-2005298 Msa0230170:three_prime_UTR
ACCGTTGACTTTAGCTCCGT+TGG 0.454754 2_2:+2010453 None:intergenic
TGATAAGATGCTTGAATCAC+TGG 0.464819 2_2:-2008511 Msa0230170:CDS
TGTAGGTTGAAGCGTTATAG+AGG 0.469448 2_2:-2006521 Msa0230170:intron
GCGTTCCAACAACAATTTGA+GGG 0.474065 2_2:+2008610 None:intergenic
CACAAGAGAACTAGCTTACC+AGG 0.475324 2_2:-2008830 Msa0230170:intron
TAACGATGAGCTAAAGGAAC+TGG 0.484575 2_2:+2004836 None:intergenic
GAGTGCCCTCAAATTGTTGT+TGG 0.484980 2_2:-2008615 Msa0230170:CDS
GTATGAGTACCCTCATCTAC+TGG 0.485739 2_2:-2005306 Msa0230170:three_prime_UTR
GAAGCGTTATAGAGGTTTCA+AGG 0.487117 2_2:-2006513 Msa0230170:CDS
TGTCAAGCTAAATCTGGAAT+GGG 0.490633 2_2:-2008934 Msa0230170:CDS
CAGTCCATGAAGGGTTAACT+TGG 0.491161 2_2:+2007627 None:intergenic
TTGTCAAGCTAAATCTGGAA+TGG 0.491537 2_2:-2008935 Msa0230170:CDS
CTGCAGACACTTACTTGCAC+AGG 0.493193 2_2:-2006394 Msa0230170:CDS
ACGATAGCCCGAAGAAGCTC+TGG 0.493356 2_2:+2010249 None:intergenic
CAAGAAGATCATTCAACTTG+CGG 0.494607 2_2:+2007463 None:intergenic
GCTACAGATTTGGTTGGTAG+AGG 0.500164 2_2:-2006467 Msa0230170:CDS
ACAGAACAAGTGCAGAAACT+TGG 0.502577 2_2:+2008857 None:intergenic
ACCATGCTGATGTCGGGCCT+AGG 0.510799 2_2:-2005238 Msa0230170:three_prime_UTR
TCCGTGTAACGATGAGCTAA+AGG 0.511745 2_2:+2004830 None:intergenic
GATTTGACCATGCTGATGTC+GGG 0.511765 2_2:-2005244 Msa0230170:three_prime_UTR
CATCATAACTTGCTTATCGT+GGG 0.512480 2_2:+2008349 None:intergenic
AAGACAGCAACCTTCAGATC+GGG 0.512540 2_2:+2008684 None:intergenic
ACAAGTGCAGAAACTTGGCC+TGG 0.514338 2_2:+2008862 None:intergenic
CAACACTTGGTCCGTTTGGA+CGG 0.514563 2_2:-2005328 Msa0230170:three_prime_UTR
GCACTACATCAAATTGAAAG+AGG 0.517823 2_2:-2007496 Msa0230170:CDS
AACCCTTCATGGACTGGTGC+AGG 0.517866 2_2:-2007620 Msa0230170:intron
CAAAGCAATATCCACTATGA+TGG 0.521600 2_2:+2005354 None:intergenic
CTTGTAGCTACAGATTTGGT+TGG 0.522187 2_2:-2006473 Msa0230170:CDS
AAATCATTCATGATTTCGGA+TGG 0.522299 2_2:-2004973 Msa0230170:three_prime_UTR
GAAGAATACTAGCATTGGCT+AGG 0.526509 2_2:-2008584 Msa0230170:CDS
GTGATTTGCAGGTTCAGTCA+AGG 0.528181 2_2:-2006123 Msa0230170:intron
AACAAAGTACAACACAACTA+AGG 0.529373 2_2:+2005163 None:intergenic
CTACAGATTTGGTTGGTAGA+GGG 0.530961 2_2:-2006466 Msa0230170:CDS
CCATCTATATGCATTCACTC+TGG 0.537546 2_2:-2007351 Msa0230170:CDS
CAAGTTAACCCTTCATGGAC+TGG 0.538235 2_2:-2007626 Msa0230170:CDS
AAAGACATGAGCAACAAAAC+CGG 0.540312 2_2:+2005042 None:intergenic
CTGGCATGTCCCAAGAAGAA+AGG 0.541548 2_2:-2007332 Msa0230170:intron
ACCTCAAGCAATCCTCGGAA+TGG 0.545341 2_2:-2008965 Msa0230170:CDS
GTAGAGGTATCAATCTGCTC+AGG 0.546365 2_2:+2006076 None:intergenic
GGCGTTCCAACAACAATTTG+AGG 0.547645 2_2:+2008609 None:intergenic
AACAACTTGGTTGAAGTCTA+GGG 0.548156 2_2:+2007437 None:intergenic
GTTATAGAGGTTTCAAGGAG+GGG 0.549962 2_2:-2006508 Msa0230170:CDS
GCCTGGAAGAATACTAGCAT+TGG 0.549976 2_2:-2008589 Msa0230170:CDS
TCATCAACATAAATTTCCAT+AGG 0.552344 2_2:+2007655 None:intergenic
CGCCACAAATCCAGTAGATG+AGG 0.556237 2_2:+2005296 None:intergenic
TGATTTGACCATGCTGATGT+CGG 0.556376 2_2:-2005245 Msa0230170:three_prime_UTR
AGATATGCCATGAGTTTGAG+AGG 0.557167 2_2:-2008722 Msa0230170:CDS
GGGTACTCATACCGTCCAAA+CGG 0.561945 2_2:+2005317 None:intergenic
ACATCATAACTTGCTTATCG+TGG 0.563979 2_2:+2008348 None:intergenic
TCCTTTAGCTCATCGTTACA+CGG 0.564276 2_2:-2004831 Msa0230170:three_prime_UTR
AAAGTGCTTACTGTAGGTAG+AGG 0.564836 2_2:+2006060 None:intergenic
TACTAAACCTCTCAAACTCA+TGG 0.569538 2_2:+2008715 None:intergenic
TGCATACCTCAAGCAATCCT+CGG 0.569749 2_2:-2008970 Msa0230170:CDS
AAAGACAGCAACCTTCAGAT+CGG 0.576558 2_2:+2008683 None:intergenic
CGTTATAGAGGTTTCAAGGA+GGG 0.577094 2_2:-2006509 Msa0230170:CDS
CTACCTGCACCAGTCCATGA+AGG 0.577194 2_2:+2007617 None:intergenic
TACCTACTTACCCGATCTGA+AGG 0.587362 2_2:-2008694 Msa0230170:CDS
GATCAACGGAAAAGTAGCCT+AGG 0.594351 2_2:+2005221 None:intergenic
CCAGATAATGGGAGAACCAA+AGG 0.598291 2_2:-2010536 Msa0230170:intron
GTTGAAACAGAATATCGTAC+CGG 0.606839 2_2:-2005061 Msa0230170:three_prime_UTR
GACAAATTACATCCATTCCG+AGG 0.613516 2_2:+2008953 None:intergenic
CTCATCTACTGGATTTGTGG+CGG 0.619714 2_2:-2005295 Msa0230170:three_prime_UTR
TGCAGACACTTACTTGCACA+GGG 0.621788 2_2:-2006393 Msa0230170:intron
AGGAACTGGTAGCATAGACA+TGG 0.626266 2_2:+2004850 None:intergenic
TACCTGCACCAGTCCATGAA+GGG 0.627063 2_2:+2007618 None:intergenic
AACCTTCAGATCGGGTAAGT+AGG 0.628828 2_2:+2008692 None:intergenic
AAGAATACTAGCATTGGCTA+GGG 0.631042 2_2:-2008583 Msa0230170:CDS
GAATGTTTAACACCGATCAA+CGG 0.635548 2_2:+2005207 None:intergenic
CATGTGCAGTGCCATCATAG+TGG 0.639227 2_2:-2005365 Msa0230170:intron
ATCATAACTTGCTTATCGTG+GGG 0.649459 2_2:+2008350 None:intergenic
GCCACAAATCCAGTAGATGA+GGG 0.650591 2_2:+2005297 None:intergenic
GCCTAGGCCCGACATCAGCA+TGG 0.650908 2_2:+2005237 None:intergenic
TCCATTCCGAGGATTGCTTG+AGG 0.655490 2_2:+2008964 None:intergenic
GACAAAGCTCCCGATACCAA+CGG 0.662798 2_2:-2010469 Msa0230170:CDS
GGTCAATATCAAAGTTCACA+AGG 0.667495 2_2:-2008652 Msa0230170:CDS
ACCAAAGGACGAAACTTACG+AGG 0.668863 2_2:-2010521 Msa0230170:CDS
ACTGGTAGCATAGACATGGA+AGG 0.671581 2_2:+2004854 None:intergenic
ACCAACGGAGCTAAAGTCAA+CGG 0.673145 2_2:-2010454 Msa0230170:CDS
GGAAGAGCTTCTCGATTACG+AGG 0.681000 2_2:-2010500 Msa0230170:CDS
TCATAGTGGATATTGCTTTG+GGG 0.681035 2_2:-2005351 Msa0230170:exon
GATAAGATGCTTGAATCACT+GGG 0.702068 2_2:-2008510 Msa0230170:intron
AGAGCTTCTCGATTACGAGG+AGG 0.710082 2_2:-2010497 Msa0230170:CDS
AATGATTTGATAGAAATGTG+AGG 0.712968 2_2:+2004988 None:intergenic
GCGTTATAGAGGTTTCAAGG+AGG 0.725932 2_2:-2006510 Msa0230170:CDS
AGTCGAGAGAACAAAGACAG+CGG 0.750658 2_2:+2008906 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAACATAATATTATAA+AGG + chr2_2:2006320-2006339 None:intergenic 10.0%
!! ACATTAAACAAAAATTATAA+AGG + chr2_2:2006491-2006510 None:intergenic 10.0%
!!! AATCTTATTATTTTATTTGT+AGG - chr2_2:2009152-2009171 Msa0230170:intron 10.0%
!!! ATTTATTTTCAATTTTTCTT+AGG - chr2_2:2009720-2009739 Msa0230170:intron 10.0%
!!! AATGACAAAAAATTGATAAT+TGG + chr2_2:2004851-2004870 None:intergenic 15.0%
!!! TCTAAATCTCTATTAATTTT+AGG - chr2_2:2005076-2005095 Msa0230170:three_prime_UTR 15.0%
!!! CTAAATCTCTATTAATTTTA+GGG - chr2_2:2005077-2005096 Msa0230170:three_prime_UTR 15.0%
!! TAATATCTTTAAATTCTCAT+TGG - chr2_2:2005650-2005669 Msa0230170:intron 15.0%
!! TGAAATTTCTTAAAAGAATA+GGG - chr2_2:2005800-2005819 Msa0230170:intron 15.0%
!! AATATTATGTTGAATTACTA+TGG - chr2_2:2006324-2006343 Msa0230170:intron 15.0%
!!! TTTTTTTTTTAACACTTAAC+AGG - chr2_2:2006553-2006572 Msa0230170:intron 15.0%
!!! TACTTTTTTCAAACATTTTT+GGG - chr2_2:2008467-2008486 Msa0230170:intron 15.0%
!! ATAAATGAAAGATCAAAATA+AGG + chr2_2:2009343-2009362 None:intergenic 15.0%
!!! TATTTACTTTCACTAAATTT+TGG - chr2_2:2009360-2009379 Msa0230170:intron 15.0%
!! TTTATATTTATGATTTGAAC+TGG - chr2_2:2009924-2009943 Msa0230170:intron 15.0%
!!! TTTTCTCGTTAAATTTTTTT+TGG + chr2_2:2010184-2010203 None:intergenic 15.0%
!!! AAAAATTGATAATTGGCTAA+TGG + chr2_2:2004844-2004863 None:intergenic 20.0%
!! TTTGTAATAAGTAAAATCAG+TGG + chr2_2:2005299-2005318 None:intergenic 20.0%
!!! TGTATCTTTGTTCTTTTTTA+TGG - chr2_2:2005366-2005385 Msa0230170:intron 20.0%
!! TAATATTAACAGATGTGATT+TGG - chr2_2:2005749-2005768 Msa0230170:intron 20.0%
!! AATATTAACAGATGTGATTT+GGG - chr2_2:2005750-2005769 Msa0230170:intron 20.0%
!! GTGAAATTTCTTAAAAGAAT+AGG - chr2_2:2005799-2005818 Msa0230170:intron 20.0%
!!! GAGGGATTTAATTTTAAAAT+TGG - chr2_2:2005831-2005850 Msa0230170:intron 20.0%
!!! GGATTTAATTTTAAAATTGG+AGG - chr2_2:2005834-2005853 Msa0230170:intron 20.0%
!!! ATGCTTTAAGTTGTTTTTAT+AGG - chr2_2:2006040-2006059 Msa0230170:intron 20.0%
!! AAGGAAAAAATAAAGAGAAA+GGG + chr2_2:2006394-2006413 None:intergenic 20.0%
!! AAAGGAAAAAATAAAGAGAA+AGG + chr2_2:2006395-2006414 None:intergenic 20.0%
!! TATATACAAAAATTTCGCAA+AGG + chr2_2:2006413-2006432 None:intergenic 20.0%
!!! TTTGCGAAATTTTTGTATAT+AGG - chr2_2:2006412-2006431 Msa0230170:CDS 20.0%
!!! GTATTTTCATATAAATGACA+AGG - chr2_2:2006517-2006536 Msa0230170:CDS 20.0%
!! TAATATTCAAACTAAACAGA+AGG + chr2_2:2007221-2007240 None:intergenic 20.0%
!!! GTACTTTTTTCAAACATTTT+TGG - chr2_2:2008466-2008485 Msa0230170:intron 20.0%
!!! ACTTTTTTCAAACATTTTTG+GGG - chr2_2:2008468-2008487 Msa0230170:intron 20.0%
!! TTAGTGTTAATACATTTAAG+TGG + chr2_2:2008513-2008532 None:intergenic 20.0%
!!! TTTTTAACTTTGAATGACAA+AGG - chr2_2:2009013-2009032 Msa0230170:intron 20.0%
!!! TTTCACTAAATTTTGGTTTA+GGG - chr2_2:2009367-2009386 Msa0230170:intron 20.0%
!! AACATAATTAGAAATGCTAA+TGG + chr2_2:2009543-2009562 None:intergenic 20.0%
!!! TTTTATCAATGCATTACAAA+AGG - chr2_2:2009846-2009865 Msa0230170:intron 20.0%
!!! TTTTTATGTTTCATGATGTT+AGG - chr2_2:2009996-2010015 Msa0230170:intron 20.0%
!!! CATATGTTCTACATTTTTTA+GGG + chr2_2:2010151-2010170 None:intergenic 20.0%
!!! ACATATGTTCTACATTTTTT+AGG + chr2_2:2010152-2010171 None:intergenic 20.0%
!! TATCAAATCATTCATGATTT+CGG - chr2_2:2010713-2010732 Msa0230170:intron 20.0%
! TGTTAGACGAAAAAGAATTT+GGG + chr2_2:2004934-2004953 None:intergenic 25.0%
! TTGTTAGACGAAAAAGAATT+TGG + chr2_2:2004935-2004954 None:intergenic 25.0%
!!! TCTTTGTTCTTTTTTATGGT+AGG - chr2_2:2005370-2005389 Msa0230170:intron 25.0%
!!! CTTTGTTCTTTTTTATGGTA+GGG - chr2_2:2005371-2005390 Msa0230170:intron 25.0%
!!! TTTGTTCTTTTTTATGGTAG+GGG - chr2_2:2005372-2005391 Msa0230170:intron 25.0%
! TATCTTTAAATTCTCATTGG+AGG - chr2_2:2005653-2005672 Msa0230170:intron 25.0%
! ATCATTCAAAAATTTGTCGA+AGG - chr2_2:2005863-2005882 Msa0230170:intron 25.0%
! ATAAGCTTATTTATCCAAAC+AGG + chr2_2:2005928-2005947 None:intergenic 25.0%
!!! GTTGTTTTTATAGGCTATAT+TGG - chr2_2:2006049-2006068 Msa0230170:intron 25.0%
! AATGAACGAATGAAAAAAAC+AGG + chr2_2:2006297-2006316 None:intergenic 25.0%
! TAAACGAATGAAAAAACAGT+CGG + chr2_2:2006466-2006485 None:intergenic 25.0%
!!! TTTAGTTTGAATATTACCAC+TGG - chr2_2:2007225-2007244 Msa0230170:intron 25.0%
! TAAGAACAATAAAAACCACA+TGG + chr2_2:2007265-2007284 None:intergenic 25.0%
! ATCAATCTTTACTTCTGATA+GGG - chr2_2:2007516-2007535 Msa0230170:intron 25.0%
! TGTTAAGTAAAATTGGACAA+AGG + chr2_2:2007564-2007583 None:intergenic 25.0%
! TTTGACAGTAAATCATGTTA+GGG + chr2_2:2008001-2008020 None:intergenic 25.0%
! ATTTGACAGTAAATCATGTT+AGG + chr2_2:2008002-2008021 None:intergenic 25.0%
! TCATCAACATAAATTTCCAT+AGG + chr2_2:2008038-2008057 None:intergenic 25.0%
! TATAAGCAAACAACTTGAAA+AGG + chr2_2:2008100-2008119 None:intergenic 25.0%
!!! ACAGATAAGACATTTTAAGA+GGG + chr2_2:2008146-2008165 None:intergenic 25.0%
!! TACAGATAAGACATTTTAAG+AGG + chr2_2:2008147-2008166 None:intergenic 25.0%
!! TTTTCACAAAGATAACAACT+TGG + chr2_2:2008269-2008288 None:intergenic 25.0%
! TAAAACAAACCTTTCTTCTT+GGG + chr2_2:2008370-2008389 None:intergenic 25.0%
! ATAAAACAAACCTTTCTTCT+TGG + chr2_2:2008371-2008390 None:intergenic 25.0%
!! TTCATGTTTTGCAATTCTAT+TGG - chr2_2:2008423-2008442 Msa0230170:intron 25.0%
!! TGTGAGCTTTTTGAATATAA+GGG - chr2_2:2008642-2008661 Msa0230170:CDS 25.0%
!! AGCATTGAATAAATCTCTTA+GGG + chr2_2:2008894-2008913 None:intergenic 25.0%
!! TAGCATTGAATAAATCTCTT+AGG + chr2_2:2008895-2008914 None:intergenic 25.0%
! TTGTTCTTTCAAATCAAAAG+TGG + chr2_2:2008976-2008995 None:intergenic 25.0%
! GAATTGTCAATAGACAATTA+AGG + chr2_2:2009075-2009094 None:intergenic 25.0%
!!! CTTTCACTAAATTTTGGTTT+AGG - chr2_2:2009366-2009385 Msa0230170:intron 25.0%
! ATGAAACAAATGTAATTGCA+AGG + chr2_2:2009456-2009475 None:intergenic 25.0%
! AAATGTAGAACATATGTTTG+TGG - chr2_2:2010155-2010174 Msa0230170:intron 25.0%
! ATCAAACTAATTATGCAACT+TGG + chr2_2:2010238-2010257 None:intergenic 25.0%
! AATATTAATCTCTTCTGACT+TGG - chr2_2:2010295-2010314 Msa0230170:CDS 25.0%
! ACACTCTTGTATACTTTAAT+AGG - chr2_2:2010607-2010626 Msa0230170:intron 25.0%
! AATGATTTGATAGAAATGTG+AGG + chr2_2:2010705-2010724 None:intergenic 25.0%
!!! AGCTCAAAATCTGTTTTTTT+TGG - chr2_2:2010774-2010793 Msa0230170:intron 25.0%
!!! GCTCAAAATCTGTTTTTTTT+GGG - chr2_2:2010775-2010794 Msa0230170:intron 25.0%
!!! TATTTTCAGATTGATTTTGC+AGG - chr2_2:2010802-2010821 Msa0230170:intron 25.0%
TTAGACGAAAAAGAATTTGG+GGG + chr2_2:2004932-2004951 None:intergenic 30.0%
GTTAGACGAAAAAGAATTTG+GGG + chr2_2:2004933-2004952 None:intergenic 30.0%
!!! ATTCTAGGGTTTTAGAAGAA+GGG + chr2_2:2005046-2005065 None:intergenic 30.0%
!!! TATTCTAGGGTTTTAGAAGA+AGG + chr2_2:2005047-2005066 None:intergenic 30.0%
!! TAGAGATAGAGAGTATTCTA+GGG + chr2_2:2005060-2005079 None:intergenic 30.0%
!! TTAGAGATAGAGAGTATTCT+AGG + chr2_2:2005061-2005080 None:intergenic 30.0%
ACAAGAAACAACTTACTTCT+TGG + chr2_2:2005270-2005289 None:intergenic 30.0%
ACTACATAGAAGAAACATCA+TGG + chr2_2:2005343-2005362 None:intergenic 30.0%
! GCTGTACTTTTCTACAATTT+TGG - chr2_2:2005536-2005555 Msa0230170:intron 30.0%
TTATGATGATTCCTGTAGTA+TGG - chr2_2:2005610-2005629 Msa0230170:intron 30.0%
AACAAATTACTCCATACTAC+AGG + chr2_2:2005624-2005643 None:intergenic 30.0%
! TTGGAGGTTTTTGATAAATG+TGG - chr2_2:2005669-2005688 Msa0230170:intron 30.0%
! TGGAGGTTTTTGATAAATGT+GGG - chr2_2:2005670-2005689 Msa0230170:intron 30.0%
! GTTTTTATAGGCTATATTGG+AGG - chr2_2:2006052-2006071 Msa0230170:intron 30.0%
GTGAACAAGACTTAATCATA+GGG + chr2_2:2006228-2006247 None:intergenic 30.0%
AGTGAACAAGACTTAATCAT+AGG + chr2_2:2006229-2006248 None:intergenic 30.0%
AATAAAGAGAAAGGGAGTAA+GGG + chr2_2:2006386-2006405 None:intergenic 30.0%
AAATAAAGAGAAAGGGAGTA+AGG + chr2_2:2006387-2006406 None:intergenic 30.0%
! GCGAAATTTTTGTATATAGG+TGG - chr2_2:2006415-2006434 Msa0230170:CDS 30.0%
AAACGAATGAAAAAACAGTC+GGG + chr2_2:2006465-2006484 None:intergenic 30.0%
!! CAAATTAAAAGCGTCAGAAA+TGG - chr2_2:2006631-2006650 Msa0230170:intron 30.0%
!!! TGGTTTATTTTACTTACCGT+TGG - chr2_2:2006651-2006670 Msa0230170:intron 30.0%
GATGATGAAGCAAAGAAAAA+AGG + chr2_2:2006687-2006706 None:intergenic 30.0%
! GTAATTTGTCAAGCTAAATC+TGG - chr2_2:2006750-2006769 Msa0230170:intron 30.0%
TAGCTTACCAGGTATTTATT+GGG - chr2_2:2006871-2006890 Msa0230170:intron 30.0%
!!! ATGTTTTTTTTGCAGACATG+AGG - chr2_2:2007287-2007306 Msa0230170:intron 30.0%
!!! GCATAAATTTTTTGCAGACT+GGG + chr2_2:2007396-2007415 None:intergenic 30.0%
!!! TGCATAAATTTTTTGCAGAC+TGG + chr2_2:2007397-2007416 None:intergenic 30.0%
ATGCAAGATGTAATTTCTCA+TGG - chr2_2:2007412-2007431 Msa0230170:CDS 30.0%
TCAAACAACTAAAAACCTCA+GGG + chr2_2:2007483-2007502 None:intergenic 30.0%
TTCAAACAACTAAAAACCTC+AGG + chr2_2:2007484-2007503 None:intergenic 30.0%
!! TTTTAGTTGTTTGAATGCTG+TGG - chr2_2:2007489-2007508 Msa0230170:CDS 30.0%
CATCAATCTTTACTTCTGAT+AGG - chr2_2:2007515-2007534 Msa0230170:intron 30.0%
AGCAGGTTGTTAAGTAAAAT+TGG + chr2_2:2007571-2007590 None:intergenic 30.0%
! AATTTTACTTAACAACCTGC+TGG - chr2_2:2007570-2007589 Msa0230170:intron 30.0%
! TCTCTAATATTTGCTAGTGT+TGG - chr2_2:2007719-2007738 Msa0230170:intron 30.0%
! CTCTAATATTTGCTAGTGTT+GGG - chr2_2:2007720-2007739 Msa0230170:intron 30.0%
!!! ATGGGTTTTTTTCATTGTGT+TGG - chr2_2:2007744-2007763 Msa0230170:intron 30.0%
!!! TGGGTTTTTTTCATTGTGTT+GGG - chr2_2:2007745-2007764 Msa0230170:intron 30.0%
!!! TTGTTCCTGTCATTTTTCTT+TGG - chr2_2:2007833-2007852 Msa0230170:intron 30.0%
!!! TGTTCCTGTCATTTTTCTTT+GGG - chr2_2:2007834-2007853 Msa0230170:intron 30.0%
ATAAATTTCCATAGGCTGAA+AGG + chr2_2:2008030-2008049 None:intergenic 30.0%
!! CAGATAAGACATTTTAAGAG+GGG + chr2_2:2008145-2008164 None:intergenic 30.0%
GTTAATACATTTAAGTGGCA+TGG + chr2_2:2008508-2008527 None:intergenic 30.0%
TAATCTGTAGCTCACAATAA+TGG - chr2_2:2008530-2008549 Msa0230170:CDS 30.0%
! GTGTGAGCTTTTTGAATATA+AGG - chr2_2:2008641-2008660 Msa0230170:CDS 30.0%
! TTTGAATATAAGGGTGTGTT+TGG - chr2_2:2008651-2008670 Msa0230170:CDS 30.0%
ATGCTATTATGACATTACTG+AGG - chr2_2:2008909-2008928 Msa0230170:CDS 30.0%
TTAACTTTGAATGACAAAGG+AGG - chr2_2:2009016-2009035 Msa0230170:intron 30.0%
TTGATGTTCTCAACAATGTA+AGG - chr2_2:2009488-2009507 Msa0230170:intron 30.0%
TGATGTTCTCAACAATGTAA+GGG - chr2_2:2009489-2009508 Msa0230170:intron 30.0%
!! TTATGTTTGTTGTGATTTGC+AGG - chr2_2:2009556-2009575 Msa0230170:intron 30.0%
!! AATGAAAAAGTGCTTACTGT+AGG + chr2_2:2009639-2009658 None:intergenic 30.0%
!! TCCTGTATTGATTTGTTTGT+AGG - chr2_2:2009672-2009691 Msa0230170:intron 30.0%
TCCTACAAACAAATCAATAC+AGG + chr2_2:2009676-2009695 None:intergenic 30.0%
!! GTATTGATTTGTTTGTAGGA+CGG - chr2_2:2009676-2009695 Msa0230170:intron 30.0%
CGGAATTGGAATTATAAGTT+AGG - chr2_2:2009696-2009715 Msa0230170:intron 30.0%
AATCGTGCAAAATTAGCAAA+TGG + chr2_2:2009823-2009842 None:intergenic 30.0%
ATTTGTGCTTTCCTAAAGTT+TGG - chr2_2:2009873-2009892 Msa0230170:intron 30.0%
CAGCTAAGAAAATGAGTATT+TGG + chr2_2:2009972-2009991 None:intergenic 30.0%
TTTCTTTGTACTTGAGAGTT+AGG - chr2_2:2010031-2010050 Msa0230170:intron 30.0%
!! ATCATAGTGGATATTGCTTT+GGG - chr2_2:2010338-2010357 Msa0230170:intron 30.0%
GTGTTAAACATTCTGTATGA+TGG - chr2_2:2010493-2010512 Msa0230170:CDS 30.0%
AACAAAGTACAACACAACTA+AGG + chr2_2:2010530-2010549 None:intergenic 30.0%
!! TTTACGATCATGTTTTGAGT+TGG - chr2_2:2010550-2010569 Msa0230170:intron 30.0%
!!! TGTTTTGAGTTGGTATTTGA+CGG - chr2_2:2010560-2010579 Msa0230170:intron 30.0%
!!! TCATGTCTTTGGTGTTTTTA+CGG - chr2_2:2010661-2010680 Msa0230170:intron 30.0%
TTGATAGAAATGTGAGGAAA+AGG + chr2_2:2010699-2010718 None:intergenic 30.0%
AAATCATTCATGATTTCGGA+TGG - chr2_2:2010717-2010736 Msa0230170:intron 30.0%
!!! TTTGTTCTGAAGTGTACTTT+TGG - chr2_2:2010749-2010768 Msa0230170:intron 30.0%
GAATTGAGGAATTAGGGTTA+GGG + chr2_2:2004982-2005001 None:intergenic 35.0%
TGAATTGAGGAATTAGGGTT+AGG + chr2_2:2004983-2005002 None:intergenic 35.0%
GGTTGTGAATTGAGGAATTA+GGG + chr2_2:2004988-2005007 None:intergenic 35.0%
AGGTTGTGAATTGAGGAATT+AGG + chr2_2:2004989-2005008 None:intergenic 35.0%
GAAATGAAAGAGTGAAAGGA+AGG + chr2_2:2005009-2005028 None:intergenic 35.0%
ACCATCTATTGCCAGATAAT+GGG - chr2_2:2005143-2005162 Msa0230170:three_prime_UTR 35.0%
TATGTTGGAATTCACAGTTC+AGG - chr2_2:2005396-2005415 Msa0230170:intron 35.0%
TTCAGAAGGATGTTCAAATC+CGG + chr2_2:2005472-2005491 None:intergenic 35.0%
ATGGAAAATTTGCCTTCAGA+AGG + chr2_2:2005486-2005505 None:intergenic 35.0%
! ATGTGATTTGGGTTTGAAGA+TGG - chr2_2:2005761-2005780 Msa0230170:intron 35.0%
TTAAAAGAATAGGGTAGCAG+TGG - chr2_2:2005809-2005828 Msa0230170:intron 35.0%
! CTATATGTGAGGTGCTAATT+TGG + chr2_2:2005890-2005909 None:intergenic 35.0%
AATTAGCACCTCACATATAG+TGG - chr2_2:2005890-2005909 Msa0230170:intron 35.0%
!! GTCTTGTTCACTCTCATTTT+AGG - chr2_2:2006237-2006256 Msa0230170:intron 35.0%
ATAAAGAGAAAGGGAGTAAG+GGG + chr2_2:2006385-2006404 None:intergenic 35.0%
CATCTATCACAATACTGTTC+TGG - chr2_2:2006581-2006600 Msa0230170:intron 35.0%
TTGTCAAGCTAAATCTGGAA+TGG - chr2_2:2006755-2006774 Msa0230170:intron 35.0%
! TGTCAAGCTAAATCTGGAAT+GGG - chr2_2:2006756-2006775 Msa0230170:intron 35.0%
CTAGCTTACCAGGTATTTAT+TGG - chr2_2:2006870-2006889 Msa0230170:intron 35.0%
AGCTTACCAGGTATTTATTG+GGG - chr2_2:2006872-2006891 Msa0230170:intron 35.0%
ATGGCATATCTGAAAGGAAA+AGG + chr2_2:2006959-2006978 None:intergenic 35.0%
AAACTCATGGCATATCTGAA+AGG + chr2_2:2006965-2006984 None:intergenic 35.0%
TACTAAACCTCTCAAACTCA+TGG + chr2_2:2006978-2006997 None:intergenic 35.0%
GGTCAATATCAAAGTTCACA+AGG - chr2_2:2007038-2007057 Msa0230170:intron 35.0%
!! AAGAATACTAGCATTGGCTA+GGG - chr2_2:2007107-2007126 Msa0230170:intron 35.0%
TGATAAGATGCTTGAATCAC+TGG - chr2_2:2007179-2007198 Msa0230170:intron 35.0%
GATAAGATGCTTGAATCACT+GGG - chr2_2:2007180-2007199 Msa0230170:intron 35.0%
!!! GTCTTCTCTTATTTTCCATG+TGG - chr2_2:2007247-2007266 Msa0230170:intron 35.0%
!! ATCATAACTTGCTTATCGTG+GGG + chr2_2:2007343-2007362 None:intergenic 35.0%
!! CATCATAACTTGCTTATCGT+GGG + chr2_2:2007344-2007363 None:intergenic 35.0%
!! ACATCATAACTTGCTTATCG+TGG + chr2_2:2007345-2007364 None:intergenic 35.0%
!!! TAAATTTTTTGCAGACTGGG+CGG + chr2_2:2007393-2007412 None:intergenic 35.0%
! ATATTTGCTAGTGTTGGGTA+TGG - chr2_2:2007725-2007744 Msa0230170:intron 35.0%
! TATTTGCTAGTGTTGGGTAT+GGG - chr2_2:2007726-2007745 Msa0230170:intron 35.0%
!!! CACTTTTTCTTTGAAGAGGA+GGG - chr2_2:2007770-2007789 Msa0230170:intron 35.0%
!! ACTTTTTCTTTGAAGAGGAG+GGG - chr2_2:2007771-2007790 Msa0230170:intron 35.0%
!!! TTGGTTGGGTTGAGATATTT+TGG - chr2_2:2007808-2007827 Msa0230170:intron 35.0%
!!! TGGTTGGGTTGAGATATTTT+GGG - chr2_2:2007809-2007828 Msa0230170:intron 35.0%
GTGACAAAAAAGTTTCTGCA+AGG - chr2_2:2007888-2007907 Msa0230170:intron 35.0%
ATCCATCATTCATTTCGTTG+TGG - chr2_2:2007953-2007972 Msa0230170:intron 35.0%
ATCCACAACGAAATGAATGA+TGG + chr2_2:2007958-2007977 None:intergenic 35.0%
! AATTTGTTCCTTTCAGCCTA+TGG - chr2_2:2008019-2008038 Msa0230170:intron 35.0%
AATTTGATGTAGTGCTGTCA+CGG + chr2_2:2008189-2008208 None:intergenic 35.0%
GCACTACATCAAATTGAAAG+AGG - chr2_2:2008194-2008213 Msa0230170:intron 35.0%
CAAGAAGATCATTCAACTTG+CGG + chr2_2:2008230-2008249 None:intergenic 35.0%
AACAACTTGGTTGAAGTCTA+GGG + chr2_2:2008256-2008275 None:intergenic 35.0%
TAACAACTTGGTTGAAGTCT+AGG + chr2_2:2008257-2008276 None:intergenic 35.0%
!! ACATTTTTGGGGATTTTGTG+TGG - chr2_2:2008479-2008498 Msa0230170:intron 35.0%
! GTAAATTCTACACCTCCTTT+TGG + chr2_2:2008558-2008577 None:intergenic 35.0%
TAAATCTCTTAGGGTGTGTT+TGG + chr2_2:2008885-2008904 None:intergenic 35.0%
ATGACATTACTGAGGAATGA+TGG - chr2_2:2008917-2008936 Msa0230170:CDS 35.0%
TATTGACAATTCTGTTGCAG+TGG - chr2_2:2009083-2009102 Msa0230170:intron 35.0%
ATTGACAATTCTGTTGCAGT+GGG - chr2_2:2009084-2009103 Msa0230170:intron 35.0%
GATTCTTGTAGCTACAGATT+TGG - chr2_2:2009213-2009232 Msa0230170:intron 35.0%
CAAATGTAATTGCAAGGCTT+TGG + chr2_2:2009450-2009469 None:intergenic 35.0%
ATTTGTTTGTAGGACGGAAT+TGG - chr2_2:2009682-2009701 Msa0230170:intron 35.0%
CAAAGCAATATCCACTATGA+TGG + chr2_2:2010339-2010358 None:intergenic 35.0%
!! CATCATAGTGGATATTGCTT+TGG - chr2_2:2010337-2010356 Msa0230170:intron 35.0%
!! TCATAGTGGATATTGCTTTG+GGG - chr2_2:2010339-2010358 Msa0230170:intron 35.0%
GAATGTTTAACACCGATCAA+CGG + chr2_2:2010486-2010505 None:intergenic 35.0%
GTTGAAACAGAATATCGTAC+CGG - chr2_2:2010629-2010648 Msa0230170:intron 35.0%
AAAGACATGAGCAACAAAAC+CGG + chr2_2:2010651-2010670 None:intergenic 35.0%
!! TTTCAGATTGATTTTGCAGG+TGG - chr2_2:2010805-2010824 Msa0230170:intron 35.0%
GAAAGGAAGGTTGTGAATTG+AGG + chr2_2:2004996-2005015 None:intergenic 40.0%
CTGCGAAATGAAAGAGTGAA+AGG + chr2_2:2005013-2005032 None:intergenic 40.0%
CTTTCACTCTTTCATTTCGC+AGG - chr2_2:2005011-2005030 Msa0230170:three_prime_UTR 40.0%
CACCATCTATTGCCAGATAA+TGG - chr2_2:2005142-2005161 Msa0230170:three_prime_UTR 40.0%
TCCCATTATCTGGCAATAGA+TGG + chr2_2:2005147-2005166 None:intergenic 40.0%
! TTTTATGGTAGGGGCTATGT+TGG - chr2_2:2005381-2005400 Msa0230170:intron 40.0%
TTCTCAAACCAGAGCTTCTT+CGG - chr2_2:2005433-2005452 Msa0230170:intron 40.0%
GGATTTGAACATCCTTCTGA+AGG - chr2_2:2005471-2005490 Msa0230170:intron 40.0%
TAGTCCATCCACTATATGTG+AGG + chr2_2:2005901-2005920 None:intergenic 40.0%
!! ACATATAGTGGATGGACTAC+AGG - chr2_2:2005902-2005921 Msa0230170:intron 40.0%
TCAGATAAGCCAATCCAAAC+AGG - chr2_2:2006202-2006221 Msa0230170:intron 40.0%
ACTTAATCATAGGGCCTGTT+TGG + chr2_2:2006219-2006238 None:intergenic 40.0%
TCTGGAGAACTAACATGCTT+TGG - chr2_2:2006599-2006618 Msa0230170:intron 40.0%
!! TTACTTACCGTTGGTTCCTT+CGG - chr2_2:2006660-2006679 Msa0230170:intron 40.0%
GACAAATTACATCCATTCCG+AGG + chr2_2:2006740-2006759 None:intergenic 40.0%
ACAGAACAAGTGCAGAAACT+TGG + chr2_2:2006836-2006855 None:intergenic 40.0%
AGATATGCCATGAGTTTGAG+AGG - chr2_2:2006968-2006987 Msa0230170:intron 40.0%
AAAGACAGCAACCTTCAGAT+CGG + chr2_2:2007010-2007029 None:intergenic 40.0%
! CTGAAGGTTGCTGTCTTTTA+TGG - chr2_2:2007012-2007031 Msa0230170:intron 40.0%
! AAGGTTGCTGTCTTTTATGG+TGG - chr2_2:2007015-2007034 Msa0230170:intron 40.0%
! AGGTTGCTGTCTTTTATGGT+GGG - chr2_2:2007016-2007035 Msa0230170:intron 40.0%
GCGTTCCAACAACAATTTGA+GGG + chr2_2:2007083-2007102 None:intergenic 40.0%
!! GAAGAATACTAGCATTGGCT+AGG - chr2_2:2007106-2007125 Msa0230170:intron 40.0%
GGAAAATAAGAGAAGACCAG+TGG + chr2_2:2007244-2007263 None:intergenic 40.0%
CTAAAAACCTCAGGGAATGT+GGG + chr2_2:2007475-2007494 None:intergenic 40.0%
ACTAAAAACCTCAGGGAATG+TGG + chr2_2:2007476-2007495 None:intergenic 40.0%
ATTGGAGTAGAAGATGTGGA+TGG - chr2_2:2007618-2007637 Msa0230170:intron 40.0%
TTGGAGTAGAAGATGTGGAT+GGG - chr2_2:2007619-2007638 Msa0230170:intron 40.0%
TTTAGTAATGCTCCTGACTG+TGG - chr2_2:2007645-2007664 Msa0230170:CDS 40.0%
TTAGTAATGCTCCTGACTGT+GGG - chr2_2:2007646-2007665 Msa0230170:CDS 40.0%
AAGTACATAATCCCACAGTC+AGG + chr2_2:2007660-2007679 None:intergenic 40.0%
!!! GGTGCACTTTTTCTTTGAAG+AGG - chr2_2:2007766-2007785 Msa0230170:intron 40.0%
!!! GCACTTTTTCTTTGAAGAGG+AGG - chr2_2:2007769-2007788 Msa0230170:intron 40.0%
TGCACCCAAAGAAAAATGAC+AGG + chr2_2:2007841-2007860 None:intergenic 40.0%
! TTGTGGATTCCATTAGCTTG+AGG - chr2_2:2007970-2007989 Msa0230170:intron 40.0%
CCAGAGTGAATGCATATAGA+TGG + chr2_2:2008342-2008361 None:intergenic 40.0%
CCATCTATATGCATTCACTC+TGG - chr2_2:2008339-2008358 Msa0230170:CDS 40.0%
AAAATGATTCCCAGCATCTG+CGG + chr2_2:2008401-2008420 None:intergenic 40.0%
! CTCACAATAATGGTGCCAAA+AGG - chr2_2:2008540-2008559 Msa0230170:CDS 40.0%
! ACAATAATGGTGCCAAAAGG+AGG - chr2_2:2008543-2008562 Msa0230170:CDS 40.0%
TCTGAAAACGCTTAGACAAG+AGG + chr2_2:2008580-2008599 None:intergenic 40.0%
! ATAAGGGTGTGTTTGGATTG+AGG - chr2_2:2008658-2008677 Msa0230170:CDS 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG - chr2_2:2008659-2008678 Msa0230170:CDS 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr2_2:2008665-2008684 Msa0230170:CDS 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr2_2:2008669-2008688 Msa0230170:CDS 40.0%
TTTGGATTGAGGGTTTGGAA+GGG + chr2_2:2008867-2008886 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr2_2:2008877-2008896 None:intergenic 40.0%
! CATTACTGAGGAATGATGGA+TGG - chr2_2:2008921-2008940 Msa0230170:CDS 40.0%
TTGAATGACAAAGGAGGTTC+AGG - chr2_2:2009022-2009041 Msa0230170:intron 40.0%
! TGTAGGTTGAAGCGTTATAG+AGG - chr2_2:2009169-2009188 Msa0230170:intron 40.0%
! GAAGCGTTATAGAGGTTTCA+AGG - chr2_2:2009177-2009196 Msa0230170:intron 40.0%
CGTTATAGAGGTTTCAAGGA+GGG - chr2_2:2009181-2009200 Msa0230170:intron 40.0%
GTTATAGAGGTTTCAAGGAG+GGG - chr2_2:2009182-2009201 Msa0230170:intron 40.0%
! CTTGTAGCTACAGATTTGGT+TGG - chr2_2:2009217-2009236 Msa0230170:intron 40.0%
!! CTACAGATTTGGTTGGTAGA+GGG - chr2_2:2009224-2009243 Msa0230170:intron 40.0%
AAGTAAGTGTCTGCAGAATC+AGG + chr2_2:2009292-2009311 None:intergenic 40.0%
! TTAGGGTAGTCTGACTCTTT+TGG - chr2_2:2009384-2009403 Msa0230170:intron 40.0%
!! CTTTTGGAGGGATACTTTAC+AGG - chr2_2:2009400-2009419 Msa0230170:intron 40.0%
! AAAGTGCTTACTGTAGGTAG+AGG + chr2_2:2009633-2009652 None:intergenic 40.0%
GAGACACTCAACCAAACTTT+AGG + chr2_2:2009887-2009906 None:intergenic 40.0%
AATTATGCAACTTGGTCCCT+TGG + chr2_2:2010230-2010249 None:intergenic 40.0%
!!! GATTTGTGGCGGAGATTTTT+TGG - chr2_2:2010406-2010425 Msa0230170:intron 40.0%
!!! TGGCGGAGATTTTTTGGAAA+AGG - chr2_2:2010412-2010431 Msa0230170:intron 40.0%
!!! GGCGGAGATTTTTTGGAAAA+GGG - chr2_2:2010413-2010432 Msa0230170:intron 40.0%
TGATTTGACCATGCTGATGT+CGG - chr2_2:2010445-2010464 Msa0230170:CDS 40.0%
!!! TAGGCTACTTTTCCGTTGAT+CGG - chr2_2:2010471-2010490 Msa0230170:CDS 40.0%
!!! GGTTTTGTTGCTCATGTCTT+TGG - chr2_2:2010650-2010669 Msa0230170:intron 40.0%
TAACGATGAGCTAAAGGAAC+TGG + chr2_2:2010857-2010876 None:intergenic 40.0%
! TCCTTTAGCTCATCGTTACA+CGG - chr2_2:2010859-2010878 Msa0230170:intron 40.0%
!! CCTTTGGTTCTCCCATTATC+TGG + chr2_2:2005157-2005176 None:intergenic 45.0%
!! CCAGATAATGGGAGAACCAA+AGG - chr2_2:2005154-2005173 Msa0230170:three_prime_UTR 45.0%
ACCAAAGGACGAAACTTACG+AGG - chr2_2:2005169-2005188 Msa0230170:three_prime_UTR 45.0%
TCCTCGTAAGTTTCGTCCTT+TGG + chr2_2:2005173-2005192 None:intergenic 45.0%
! ACTTTAGCTCCGTTGGTATC+GGG + chr2_2:2005233-2005252 None:intergenic 45.0%
! GACTTTAGCTCCGTTGGTAT+CGG + chr2_2:2005234-2005253 None:intergenic 45.0%
ACCAACGGAGCTAAAGTCAA+CGG - chr2_2:2005236-2005255 Msa0230170:three_prime_UTR 45.0%
TCTCAAACCAGAGCTTCTTC+GGG - chr2_2:2005434-2005453 Msa0230170:intron 45.0%
AAAGAATAGGGTAGCAGTGG+AGG - chr2_2:2005812-2005831 Msa0230170:intron 45.0%
AAGAATAGGGTAGCAGTGGA+GGG - chr2_2:2005813-2005832 Msa0230170:intron 45.0%
! AGCACCTCACATATAGTGGA+TGG - chr2_2:2005894-2005913 Msa0230170:intron 45.0%
ATCATAGGGCCTGTTTGGAT+TGG + chr2_2:2006214-2006233 None:intergenic 45.0%
AGAAAGGGAGTAAGGGGAAA+GGG + chr2_2:2006379-2006398 None:intergenic 45.0%
!! TACTTACCGTTGGTTCCTTC+GGG - chr2_2:2006661-2006680 Msa0230170:intron 45.0%
AGCAAAGAAAAAAGGCCCGA+AGG + chr2_2:2006679-2006698 None:intergenic 45.0%
TGCATACCTCAAGCAATCCT+CGG - chr2_2:2006720-2006739 Msa0230170:intron 45.0%
AGTCGAGAGAACAAAGACAG+CGG + chr2_2:2006787-2006806 None:intergenic 45.0%
! CACAAGAGAACTAGCTTACC+AGG - chr2_2:2006860-2006879 Msa0230170:intron 45.0%
CCAATGCCCCAATAAATACC+TGG + chr2_2:2006881-2006900 None:intergenic 45.0%
CCAGGTATTTATTGGGGCAT+TGG - chr2_2:2006878-2006897 Msa0230170:intron 45.0%
TACCTACTTACCCGATCTGA+AGG - chr2_2:2006996-2007015 Msa0230170:intron 45.0%
AACCTTCAGATCGGGTAAGT+AGG + chr2_2:2007001-2007020 None:intergenic 45.0%
AAGACAGCAACCTTCAGATC+GGG + chr2_2:2007009-2007028 None:intergenic 45.0%
! GGTTGCTGTCTTTTATGGTG+GGG - chr2_2:2007017-2007036 Msa0230170:intron 45.0%
GAGTGCCCTCAAATTGTTGT+TGG - chr2_2:2007075-2007094 Msa0230170:intron 45.0%
GGCGTTCCAACAACAATTTG+AGG + chr2_2:2007084-2007103 None:intergenic 45.0%
! CAAATTGTTGTTGGAACGCC+TGG - chr2_2:2007084-2007103 Msa0230170:intron 45.0%
GCCTGGAAGAATACTAGCAT+TGG - chr2_2:2007101-2007120 Msa0230170:intron 45.0%
GCCAATGCTAGTATTCTTCC+AGG + chr2_2:2007105-2007124 None:intergenic 45.0%
! GTTTTCAGCAACACTCAGCA+AGG - chr2_2:2007363-2007382 Msa0230170:CDS 45.0%
TTAACAACCTGCTGGTGAGT+TGG - chr2_2:2007578-2007597 Msa0230170:intron 45.0%
! CTGGATTGGAGTAGAAGATG+TGG - chr2_2:2007614-2007633 Msa0230170:intron 45.0%
CCAGCATGAACAACAAGAGA+CGG + chr2_2:2007687-2007706 None:intergenic 45.0%
!! CGTCTCTTGTTGTTCATGCT+GGG - chr2_2:2007685-2007704 Msa0230170:intron 45.0%
AAACACGTGGACAAGAACTG+TGG - chr2_2:2007916-2007935 Msa0230170:intron 45.0%
TGGACAAGAACTGTGGTTCA+AGG - chr2_2:2007923-2007942 Msa0230170:intron 45.0%
GGACAAGAACTGTGGTTCAA+GGG - chr2_2:2007924-2007943 Msa0230170:intron 45.0%
! GGATTCCATTAGCTTGAGGA+CGG - chr2_2:2007974-2007993 Msa0230170:intron 45.0%
GAAGCCAAGTTAACCCTTCA+TGG - chr2_2:2008059-2008078 Msa0230170:intron 45.0%
CAGTCCATGAAGGGTTAACT+TGG + chr2_2:2008066-2008085 None:intergenic 45.0%
CAAGTTAACCCTTCATGGAC+TGG - chr2_2:2008064-2008083 Msa0230170:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr2_2:2008668-2008687 Msa0230170:CDS 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr2_2:2008670-2008689 Msa0230170:CDS 45.0%
ATTGAGGGTTTGGAAGGGAA+GGG + chr2_2:2008862-2008881 None:intergenic 45.0%
GTTTGGATTGAGGGTTTGGA+AGG + chr2_2:2008868-2008887 None:intergenic 45.0%
GTGTGTTTGGATTGAGGGTT+TGG + chr2_2:2008664-2008683 None:intergenic 45.0%
CTTAGGGTGTGTTTGGATTG+AGG + chr2_2:2008878-2008897 None:intergenic 45.0%
GGAGGTTCAGGAAACAAATG+CGG - chr2_2:2009034-2009053 Msa0230170:intron 45.0%
GCGTTATAGAGGTTTCAAGG+AGG - chr2_2:2009180-2009199 Msa0230170:intron 45.0%
!! GCTACAGATTTGGTTGGTAG+AGG - chr2_2:2009223-2009242 Msa0230170:intron 45.0%
TGCAGACACTTACTTGCACA+GGG - chr2_2:2009297-2009316 Msa0230170:intron 45.0%
! GGTAGTCTGACTCTTTTGGA+GGG - chr2_2:2009388-2009407 Msa0230170:intron 45.0%
TGGAGGGATACTTTACAGGT+TGG - chr2_2:2009404-2009423 Msa0230170:intron 45.0%
TGGTTCCAAATCTTCCAGCT+CGG + chr2_2:2009430-2009449 None:intergenic 45.0%
! GTGATTTGCAGGTTCAGTCA+AGG - chr2_2:2009567-2009586 Msa0230170:intron 45.0%
!! GTAGAGGTATCAATCTGCTC+AGG + chr2_2:2009617-2009636 None:intergenic 45.0%
CTTGGATATTCTTGCCTCTC+GGG + chr2_2:2010212-2010231 None:intergenic 45.0%
CCTTGGATATTCTTGCCTCT+CGG + chr2_2:2010213-2010232 None:intergenic 45.0%
CGAGAGGCAAGAATATCCAA+GGG - chr2_2:2010211-2010230 Msa0230170:intron 45.0%
!! TATTGCTTTGGGGCAACACT+TGG - chr2_2:2010349-2010368 Msa0230170:intron 45.0%
GTATGAGTACCCTCATCTAC+TGG - chr2_2:2010384-2010403 Msa0230170:intron 45.0%
ACCCTCATCTACTGGATTTG+TGG - chr2_2:2010392-2010411 Msa0230170:intron 45.0%
GCCACAAATCCAGTAGATGA+GGG + chr2_2:2010396-2010415 None:intergenic 45.0%
CTCATCTACTGGATTTGTGG+CGG - chr2_2:2010395-2010414 Msa0230170:intron 45.0%
GATTTGACCATGCTGATGTC+GGG - chr2_2:2010446-2010465 Msa0230170:CDS 45.0%
GATCAACGGAAAAGTAGCCT+AGG + chr2_2:2010472-2010491 None:intergenic 45.0%
ACTGGTAGCATAGACATGGA+AGG + chr2_2:2010839-2010858 None:intergenic 45.0%
AGGAACTGGTAGCATAGACA+TGG + chr2_2:2010843-2010862 None:intergenic 45.0%
TCCGTGTAACGATGAGCTAA+AGG + chr2_2:2010863-2010882 None:intergenic 45.0%
!! AATATATATATAAATAAAGA+TGG + chr2_2:2005505-2005524 None:intergenic 5.0%
!! AAATCATAAATATAAAAATT+AGG + chr2_2:2009920-2009939 None:intergenic 5.0%
TGTTCACTCACTTCACCCAC+CGG - chr2_2:2004873-2004892 Msa0230170:three_prime_UTR 50.0%
TGATACGATACGATGCCGGT+GGG + chr2_2:2004891-2004910 None:intergenic 50.0%
ATGATACGATACGATGCCGG+TGG + chr2_2:2004892-2004911 None:intergenic 50.0%
GCGATGATACGATACGATGC+CGG + chr2_2:2004895-2004914 None:intergenic 50.0%
GGCATCGTATCGTATCATCG+CGG - chr2_2:2004894-2004913 Msa0230170:three_prime_UTR 50.0%
ATCGTATCGTATCATCGCGG+AGG - chr2_2:2004897-2004916 Msa0230170:three_prime_UTR 50.0%
TAGGGTTTCGAGAGACTGCA+AGG + chr2_2:2004964-2004983 None:intergenic 50.0%
GGAAGAGCTTCTCGATTACG+AGG - chr2_2:2005190-2005209 Msa0230170:three_prime_UTR 50.0%
AGAGCTTCTCGATTACGAGG+AGG - chr2_2:2005193-2005212 Msa0230170:three_prime_UTR 50.0%
GACAAAGCTCCCGATACCAA+CGG - chr2_2:2005221-2005240 Msa0230170:three_prime_UTR 50.0%
!! ACCGTTGACTTTAGCTCCGT+TGG + chr2_2:2005240-2005259 None:intergenic 50.0%
TAAGGGGAAAGGGAGCGAAA+AGG + chr2_2:2006369-2006388 None:intergenic 50.0%
GAGAAAGGGAGTAAGGGGAA+AGG + chr2_2:2006380-2006399 None:intergenic 50.0%
AAAAGGCCCGAAGGAACCAA+CGG + chr2_2:2006670-2006689 None:intergenic 50.0%
ACCTCAAGCAATCCTCGGAA+TGG - chr2_2:2006725-2006744 Msa0230170:intron 50.0%
TCCATTCCGAGGATTGCTTG+AGG + chr2_2:2006729-2006748 None:intergenic 50.0%
CAGCAGATTGATCCTGTTCC+AGG - chr2_2:2006810-2006829 Msa0230170:intron 50.0%
ACAAGTGCAGAAACTTGGCC+TGG + chr2_2:2006831-2006850 None:intergenic 50.0%
CATACTTCCCACATTCCCTG+AGG - chr2_2:2007465-2007484 Msa0230170:CDS 50.0%
!! CCGTCTCTTGTTGTTCATGC+TGG - chr2_2:2007684-2007703 Msa0230170:intron 50.0%
GTGCAAGTATCCAATGTCCG+TGG - chr2_2:2007856-2007875 Msa0230170:intron 50.0%
TTTGTCACCGACAAGTGCCA+CGG + chr2_2:2007876-2007895 None:intergenic 50.0%
CTGCAAGGAGACAAAACACG+TGG - chr2_2:2007903-2007922 Msa0230170:intron 50.0%
TACCTGCACCAGTCCATGAA+GGG + chr2_2:2008075-2008094 None:intergenic 50.0%
TCACGGCAGACAAGAAGGTA+AGG + chr2_2:2008172-2008191 None:intergenic 50.0%
TGTTAGTAGAGCAGCTGAGC+TGG - chr2_2:2008290-2008309 Msa0230170:intron 50.0%
CTGGCATGTCCCAAGAAGAA+AGG - chr2_2:2008358-2008377 Msa0230170:CDS 50.0%
TATGAGATGTCCGCAGATGC+TGG - chr2_2:2008388-2008407 Msa0230170:CDS 50.0%
ATGAGATGTCCGCAGATGCT+GGG - chr2_2:2008389-2008408 Msa0230170:CDS 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG - chr2_2:2008674-2008693 Msa0230170:CDS 50.0%
GATTGAGGGTTTGGAAGGGA+AGG + chr2_2:2008863-2008882 None:intergenic 50.0%
CAGGAAACAAATGCGGCTGT+TGG - chr2_2:2009041-2009060 Msa0230170:intron 50.0%
! GTTTCAAGGAGGGGCATACT+AGG - chr2_2:2009191-2009210 Msa0230170:intron 50.0%
CTGCAGACACTTACTTGCAC+AGG - chr2_2:2009296-2009315 Msa0230170:intron 50.0%
! GGGTAGTCTGACTCTTTTGG+AGG - chr2_2:2009387-2009406 Msa0230170:intron 50.0%
ACGAGAAAATCTGACCCGAG+AGG - chr2_2:2010195-2010214 Msa0230170:intron 50.0%
CCGAGAGGCAAGAATATCCA+AGG - chr2_2:2010210-2010229 Msa0230170:intron 50.0%
CACTATGATGGCACTGCACA+TGG + chr2_2:2010327-2010346 None:intergenic 50.0%
CATGTGCAGTGCCATCATAG+TGG - chr2_2:2010325-2010344 Msa0230170:intron 50.0%
CAACACTTGGTCCGTTTGGA+CGG - chr2_2:2010362-2010381 Msa0230170:intron 50.0%
GGGTACTCATACCGTCCAAA+CGG + chr2_2:2010376-2010395 None:intergenic 50.0%
CGCCACAAATCCAGTAGATG+AGG + chr2_2:2010397-2010416 None:intergenic 50.0%
CGGTGATGCTGTTGTTGAAC+TGG - chr2_2:2010580-2010599 Msa0230170:intron 50.0%
ACGATAGCCCGAAGAAGCTC+TGG + chr2_2:2005444-2005463 None:intergenic 55.0%
!! CTTCGGGCTATCGTCGATTC+CGG - chr2_2:2005450-2005469 Msa0230170:intron 55.0%
!! GGATGGACTACAGGCCTGTT+TGG - chr2_2:2005911-2005930 Msa0230170:intron 55.0%
GCAGAAACTTGGCCTGGAAC+AGG + chr2_2:2006825-2006844 None:intergenic 55.0%
! AACCTGCTGGTGAGTTGGAG+TGG - chr2_2:2007583-2007602 Msa0230170:intron 55.0%
! ACCTGCTGGTGAGTTGGAGT+GGG - chr2_2:2007584-2007603 Msa0230170:intron 55.0%
! TTGAAGAGGAGGGGTGTGTG+TGG - chr2_2:2007780-2007799 Msa0230170:intron 55.0%
! TGAAGAGGAGGGGTGTGTGT+GGG - chr2_2:2007781-2007800 Msa0230170:intron 55.0%
!! TGTGTGTGGGTGGGTTGGTT+GGG - chr2_2:2007794-2007813 Msa0230170:intron 55.0%
CCAATGTCCGTGGCACTTGT+CGG - chr2_2:2007866-2007885 Msa0230170:intron 55.0%
AGGGTCCGTCCTCAAGCTAA+TGG + chr2_2:2007982-2008001 None:intergenic 55.0%
!! AACCCTTCATGGACTGGTGC+AGG - chr2_2:2008070-2008089 Msa0230170:intron 55.0%
CTACCTGCACCAGTCCATGA+AGG + chr2_2:2008076-2008095 None:intergenic 55.0%
!! CTTCATGGACTGGTGCAGGT+AGG - chr2_2:2008074-2008093 Msa0230170:intron 55.0%
TGCTGTCACGGCAGACAAGA+AGG + chr2_2:2008177-2008196 None:intergenic 55.0%
GATTGAGGGTTTAGGAGGGG+AGG - chr2_2:2008673-2008692 Msa0230170:CDS 55.0%
AGGGTTTGGAAGGGAAGGGA+GGG + chr2_2:2008858-2008877 None:intergenic 55.0%
! ACTTTACAGGTTGGCCGAGC+TGG - chr2_2:2009413-2009432 Msa0230170:intron 55.0%
GTTGGCCGAGCTGGAAGATT+TGG - chr2_2:2009422-2009441 Msa0230170:intron 55.0%
! CCTGCTGGTGAGTTGGAGTG+GGG - chr2_2:2007585-2007604 Msa0230170:intron 60.0%
! CTGGTGAGTTGGAGTGGGGT+TGG - chr2_2:2007589-2007608 Msa0230170:intron 60.0%
! AGTTGGAGTGGGGTTGGCAC+TGG - chr2_2:2007595-2007614 Msa0230170:intron 60.0%
! GAGTGGGGTTGGCACTGGAT+TGG - chr2_2:2007600-2007619 Msa0230170:intron 60.0%
!! GTGTGTGTGGGTGGGTTGGT+TGG - chr2_2:2007793-2007812 Msa0230170:intron 60.0%
CCGACAAGTGCCACGGACAT+TGG + chr2_2:2007869-2007888 None:intergenic 60.0%
TTGGAAGGGAAGGGAGGGGA+GGG + chr2_2:2008853-2008872 None:intergenic 60.0%
TTTGGAAGGGAAGGGAGGGG+AGG + chr2_2:2008854-2008873 None:intergenic 60.0%
GGGTTTGGAAGGGAAGGGAG+GGG + chr2_2:2008857-2008876 None:intergenic 60.0%
GAGGGTTTGGAAGGGAAGGG+AGG + chr2_2:2008859-2008878 None:intergenic 60.0%
GGGGCAACACTTGGTCCGTT+TGG - chr2_2:2010358-2010377 Msa0230170:intron 60.0%
ACCATGCTGATGTCGGGCCT+AGG - chr2_2:2010452-2010471 Msa0230170:CDS 60.0%
CCCCACTCCAACTCACCAGC+AGG + chr2_2:2007588-2007607 None:intergenic 65.0%
! AGAGGAGGGGTGTGTGTGGG+TGG - chr2_2:2007784-2007803 Msa0230170:intron 65.0%
! GAGGAGGGGTGTGTGTGGGT+GGG - chr2_2:2007785-2007804 Msa0230170:intron 65.0%
! AGGGGTGTGTGTGGGTGGGT+TGG - chr2_2:2007789-2007808 Msa0230170:intron 65.0%
GCCTAGGCCCGACATCAGCA+TGG + chr2_2:2010456-2010475 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 2004799 2010913 2004799 ID=Msa0230170;Name=Msa0230170
chr2_2 mRNA 2004799 2010913 2004799 ID=Msa0230170-mRNA-1;Parent=Msa0230170;Name=Msa0230170-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.7|0.72|0.90|0.6|0.63|11|569|388
chr2_2 exon 2004799 2005378 2004799 ID=Msa0230170-mRNA-1:exon:797;Parent=Msa0230170-mRNA-1
chr2_2 exon 2006071 2006134 2006071 ID=Msa0230170-mRNA-1:exon:796;Parent=Msa0230170-mRNA-1
chr2_2 exon 2006394 2006538 2006394 ID=Msa0230170-mRNA-1:exon:795;Parent=Msa0230170-mRNA-1
chr2_2 exon 2007333 2007517 2007333 ID=Msa0230170-mRNA-1:exon:794;Parent=Msa0230170-mRNA-1
chr2_2 exon 2007621 2007677 2007621 ID=Msa0230170-mRNA-1:exon:793;Parent=Msa0230170-mRNA-1
chr2_2 exon 2008292 2008410 2008292 ID=Msa0230170-mRNA-1:exon:792;Parent=Msa0230170-mRNA-1
chr2_2 exon 2008511 2008742 2008511 ID=Msa0230170-mRNA-1:exon:791;Parent=Msa0230170-mRNA-1
chr2_2 exon 2008831 2008992 2008831 ID=Msa0230170-mRNA-1:exon:790;Parent=Msa0230170-mRNA-1
chr2_2 exon 2010251 2010320 2010251 ID=Msa0230170-mRNA-1:exon:789;Parent=Msa0230170-mRNA-1
chr2_2 exon 2010439 2010554 2010439 ID=Msa0230170-mRNA-1:exon:788;Parent=Msa0230170-mRNA-1
chr2_2 exon 2010908 2010913 2010908 ID=Msa0230170-mRNA-1:exon:787;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2010908 2010913 2010908 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2010439 2010554 2010439 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2010251 2010320 2010251 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2008831 2008992 2008831 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2008511 2008742 2008511 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2008292 2008410 2008292 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2007621 2007677 2007621 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2007333 2007517 2007333 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2006394 2006538 2006394 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2006071 2006134 2006071 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 CDS 2005368 2005378 2005368 ID=Msa0230170-mRNA-1:cds;Parent=Msa0230170-mRNA-1
chr2_2 three_prime_UTR 2004799 2005367 2004799 ID=Msa0230170-mRNA-1:three_prime_utr;Parent=Msa0230170-mRNA-1
Gene Sequence

>Msa0230170

ATGGCGATAATGGGAGAACCAAAGGACGAAACTTACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGAAGACAAAGCTCCCGATACCAACGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTCAAACCAGAGCTTCTTCGGGCTATCTGCATACCTCAAGCAATCCTCGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAGACCGCTGTCTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGTCACACAAGAGAACTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTTAGTACCTACTTACCCGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAATATCAAAGTTCACAAGGATCTATTGAAAAATGAGTGCCCTCAAATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCTAGGGAGAAGAATCTTTCATTGAAGAATGTTCGTCATTTCGTTTTAGATGAGTGTGATAAGATGCTTGAATCACTGGACATGAGGAAAGACGTTCAAGACATTTTCAAGTTGACTCCCCACGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAGTCTGCAAAAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAAGCCAAGTTAACCCTTCATGGACTGGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAAAACCGCAAGTTGAATGATCTTCTTGATGCCCTAGACTTCAACCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAGACTACTTATAGAGTGCAATTTTCCATCTATATGCATTCACTCTGGCATGTCCCAAGAAGAAAGGTTGAAGCGTTATAGAGGTTTCAAGGAGGGGCATACTAGGATTCTTGTAGCTACAGATTTGGTTGGTAGAGGGATTGACATTGAACGTGTCAATATTGTTATAAACTATGACATGCCTGATTCTGCAGACACTTACTTGCACAGGGTTCAGTCAAGGTTCGAAATAGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCATCATAG
Protein sequence

>Msa0230170

MAIMGEPKDETYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAICIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALAREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVQSRFEIDIKQLPEQIDTSTYMPS*