AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480390 MtrunA17_Chr4g0003441 86.682 428 40 3 4 416 63 488 0.0 729
Msa0480390 MtrunA17_Chr1g0149251 96.512 344 12 0 73 416 1 344 0.0 694
Msa0480390 MtrunA17_Chr3g0137901 99.444 180 1 0 237 416 1 180 3.44e-129 369
Msa0480390 MtrunA17_Chr3g0137891 100.000 163 0 0 73 235 1 163 4.42e-117 340
Msa0480390 MtrunA17_Chr2g0299681 39.452 365 211 7 45 408 54 409 2.14e-74 238
Msa0480390 MtrunA17_Chr2g0329931 39.452 365 211 7 45 408 54 409 8.16e-74 236
Msa0480390 MtrunA17_Chr4g0070981 38.904 365 213 7 45 408 54 409 2.08e-72 233
Msa0480390 MtrunA17_Chr7g0247191 36.388 371 224 7 44 413 162 521 1.22e-71 234
Msa0480390 MtrunA17_Chr7g0247221 34.442 421 248 8 8 413 107 514 3.28e-71 233
Msa0480390 MtrunA17_Chr7g0247181 36.388 371 224 7 44 413 152 511 3.85e-71 232
Msa0480390 MtrunA17_Chr8g0342861 38.356 365 215 7 45 408 54 409 5.65e-71 229
Msa0480390 MtrunA17_Chr2g0297261 35.792 366 223 8 45 408 47 402 7.79e-68 221
Msa0480390 MtrunA17_Chr3g0107851 34.104 346 208 7 50 380 132 472 3.29e-58 199
Msa0480390 MtrunA17_Chr2g0330401 31.978 369 229 8 34 385 85 448 3.06e-54 187
Msa0480390 MtrunA17_Chr7g0236841 34.268 321 204 6 65 382 39 355 6.43e-54 185
Msa0480390 MtrunA17_Chr6g0483491 34.268 321 204 6 65 382 39 355 9.58e-54 184
Msa0480390 MtrunA17_Chr1g0176041 35.714 350 202 7 56 385 174 520 3.01e-53 187
Msa0480390 MtrunA17_Chr3g0121351 36.103 349 193 8 56 380 165 507 5.14e-53 186
Msa0480390 MtrunA17_Chr4g0063551 35.429 350 200 7 56 382 160 506 2.55e-52 185
Msa0480390 MtrunA17_Chr4g0076491 32.979 376 208 8 45 390 300 661 5.60e-52 185
Msa0480390 MtrunA17_Chr7g0271121 34.132 334 201 7 62 384 133 458 1.20e-51 184
Msa0480390 MtrunA17_Chr1g0193491 31.672 341 215 9 62 391 141 474 1.43e-50 180
Msa0480390 MtrunA17_Chr6g0449741 32.713 376 207 9 45 390 262 621 7.41e-50 179
Msa0480390 MtrunA17_Chr2g0310581 32.184 348 223 8 58 398 75 416 1.15e-48 173
Msa0480390 MtrunA17_Chr2g0300291 32.571 350 219 10 57 396 162 504 8.43e-48 174
Msa0480390 MtrunA17_Chr3g0095031 31.358 405 240 13 24 406 73 461 1.86e-47 170
Msa0480390 MtrunA17_Chr3g0098121 32.571 350 218 11 57 396 173 514 1.93e-46 170
Msa0480390 MtrunA17_Chr6g0449911 29.771 393 249 10 34 404 154 541 2.57e-46 169
Msa0480390 MtrunA17_Chr5g0442191 31.830 377 206 14 62 412 108 459 8.17e-46 166
Msa0480390 MtrunA17_Chr2g0293631 32.362 343 214 10 48 382 512 844 9.12e-45 166
Msa0480390 MtrunA17_Chr1g0200181 30.458 371 232 8 34 382 134 500 4.31e-44 162
Msa0480390 MtrunA17_Chr7g0270131 30.448 335 219 8 57 382 253 582 6.65e-43 160
Msa0480390 MtrunA17_Chr7g0263771 32.194 351 220 10 50 395 151 488 1.43e-41 155
Msa0480390 MtrunA17_Chr2g0277821 30.655 336 218 7 57 382 525 855 1.69e-41 157
Msa0480390 MtrunA17_Chr4g0040761 31.322 348 222 12 43 383 30 367 6.77e-41 154
Msa0480390 MtrunA17_Chr1g0157691 29.380 371 236 8 34 382 136 502 9.39e-41 152
Msa0480390 MtrunA17_Chr1g0179761 27.805 410 234 11 48 407 78 475 3.33e-40 149
Msa0480390 MtrunA17_Chr3g0114081 28.696 345 221 5 61 381 41 384 2.20e-39 149
Msa0480390 MtrunA17_Chr5g0409981 30.946 349 204 8 57 382 123 457 4.15e-38 144
Msa0480390 MtrunA17_Chr8g0347161 29.412 357 226 10 45 382 115 464 4.18e-38 145
Msa0480390 MtrunA17_Chr8g0347171 29.692 357 225 10 45 382 173 522 6.13e-38 145
Msa0480390 MtrunA17_Chr8g0342851 30.612 343 206 8 64 405 1 312 3.01e-37 137
Msa0480390 MtrunA17_Chr8g0347151 29.972 357 224 9 45 382 214 563 3.28e-37 143
Msa0480390 MtrunA17_Chr3g0137881 98.387 62 1 0 4 65 1 62 3.02e-36 127
Msa0480390 MtrunA17_Chr7g0236831 27.252 444 241 15 45 415 176 610 1.15e-35 139
Msa0480390 MtrunA17_Chr2g0307471 29.305 331 220 8 61 381 116 442 1.81e-35 137
Msa0480390 MtrunA17_Chr2g0309551 26.434 401 236 6 58 401 131 529 6.31e-35 135
Msa0480390 MtrunA17_Chr6g0461751 30.294 340 212 9 58 382 162 491 7.86e-35 135
Msa0480390 MtrunA17_Chr6g0475251 30.473 338 203 11 61 378 128 453 1.39e-34 135
Msa0480390 MtrunA17_Chr5g0443991 28.150 373 238 12 24 381 70 427 1.92e-34 135
Msa0480390 MtrunA17_Chr8g0386451 30.267 337 213 8 65 382 317 650 3.42e-34 135
Msa0480390 MtrunA17_Chr1g0169331 28.894 398 240 14 47 409 6 395 1.23e-33 129
Msa0480390 MtrunA17_Chr4g0062301 28.701 331 223 9 61 381 122 449 4.29e-33 130
Msa0480390 MtrunA17_Chr4g0058591 26.301 346 226 8 13 341 177 510 7.82e-33 129
Msa0480390 MtrunA17_Chr4g0029191 27.078 421 213 17 58 394 67 477 5.11e-32 128
Msa0480390 MtrunA17_Chr1g0204391 28.653 349 211 10 61 378 69 410 9.16e-32 127
Msa0480390 MtrunA17_Chr2g0301281 26.128 421 217 17 58 394 64 474 9.57e-31 124
Msa0480390 MtrunA17_Chr4g0034411 28.097 331 215 11 65 381 105 426 1.19e-29 121
Msa0480390 MtrunA17_Chr6g0466611 27.195 353 218 12 58 382 164 505 4.54e-29 119
Msa0480390 MtrunA17_Chr5g0429221 27.019 322 224 7 66 382 33 348 1.37e-27 113
Msa0480390 MtrunA17_Chr4g0025141 31.429 210 128 5 213 407 15 223 7.53e-27 107
Msa0480390 MtrunA17_Chr3g0145781 29.006 362 215 10 55 381 151 505 1.48e-26 111
Msa0480390 MtrunA17_Chr1g0192021 24.747 396 229 11 57 395 47 430 3.46e-20 92.8
Msa0480390 MtrunA17_Chr4g0039471 33.714 175 110 4 58 229 245 416 4.14e-20 91.7
Msa0480390 MtrunA17_Chr1g0149261 90.000 40 4 0 25 64 22 61 4.93e-18 78.6
Msa0480390 MtrunA17_Chr4g0062321 29.167 192 132 4 158 346 43 233 2.85e-17 80.9
Msa0480390 MtrunA17_Chr4g0004301 24.934 377 209 12 74 382 71 441 7.83e-17 82.4
Msa0480390 MtrunA17_Chr1g0155201 29.004 231 142 8 156 382 12 224 7.98e-17 81.3
Msa0480390 MtrunA17_Chr5g0434301 24.668 377 210 12 74 382 71 441 3.77e-16 80.1
Msa0480390 MtrunA17_Chr8g0349951 36.434 129 78 4 58 184 32 158 1.12e-14 71.2
Msa0480390 MtrunA17_Chr4g0025101 35.000 100 51 1 312 397 90 189 2.00e-14 72.0
Msa0480390 MtrunA17_Chr4g0025131 28.182 220 125 8 6 197 4 218 4.96e-14 72.0
Msa0480390 MtrunA17_Chr8g0354761 22.455 334 241 7 60 381 32 359 4.09e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480390 AT5G11170.1 87.438 406 36 2 25 416 23 427 0.0 733
Msa0480390 AT5G11200.1 87.438 406 36 2 25 416 23 427 0.0 733
Msa0480390 AT5G11200.3 79.418 447 36 3 25 416 23 468 0.0 712
Msa0480390 AT5G11170.2 90.698 344 32 0 73 416 1 344 0.0 657
Msa0480390 AT5G11200.2 69.462 465 68 6 25 416 23 486 0.0 623
Msa0480390 AT4G00660.1 35.681 426 239 9 9 413 92 503 3.53e-74 240
Msa0480390 AT4G00660.2 35.681 426 239 9 9 413 92 503 3.53e-74 240
Msa0480390 AT2G45810.1 37.027 370 221 7 45 413 168 526 6.44e-74 240
Msa0480390 AT1G72730.1 36.740 411 234 9 2 408 22 410 2.84e-73 235
Msa0480390 AT3G61240.2 35.323 402 231 8 27 413 109 496 7.30e-73 237
Msa0480390 AT3G61240.1 35.323 402 231 8 27 413 109 496 7.30e-73 237
Msa0480390 AT3G13920.1 38.904 365 213 7 45 408 53 408 1.62e-72 233
Msa0480390 AT3G13920.4 38.830 376 214 8 43 408 34 403 2.60e-72 233
Msa0480390 AT3G13920.3 38.904 365 213 7 45 408 43 398 2.61e-72 233
Msa0480390 AT1G54270.1 38.356 365 215 7 45 408 53 408 1.88e-70 228
Msa0480390 AT1G54270.2 38.298 376 216 8 43 408 34 403 6.39e-70 226
Msa0480390 AT3G13920.2 40.413 339 193 6 45 382 53 383 8.17e-70 226
Msa0480390 AT3G13920.5 40.413 339 193 6 45 382 57 387 9.19e-70 226
Msa0480390 AT3G19760.1 35.519 366 224 8 45 408 49 404 5.38e-68 221
Msa0480390 AT1G51380.1 36.066 366 216 10 45 405 36 388 2.66e-65 214
Msa0480390 AT1G55150.1 33.333 372 220 10 34 385 89 452 5.76e-54 187
Msa0480390 AT1G55150.2 33.333 372 220 10 34 385 114 477 1.41e-53 186
Msa0480390 AT3G53110.1 30.946 391 231 11 48 404 90 475 2.46e-53 185
Msa0480390 AT5G60990.1 32.840 338 210 7 58 382 32 365 2.17e-51 179
Msa0480390 AT5G26742.3 32.537 335 209 6 61 384 36 364 2.35e-50 180
Msa0480390 AT5G63120.2 31.940 335 213 8 57 382 187 515 4.08e-50 178
Msa0480390 AT1G16280.1 33.043 345 218 8 57 394 80 418 4.58e-50 176
Msa0480390 AT5G26742.1 32.635 334 208 6 62 384 130 457 5.65e-50 180
Msa0480390 AT5G26742.2 32.635 334 208 6 62 384 130 457 5.70e-50 180
Msa0480390 AT2G33730.1 31.467 375 223 8 45 394 327 692 1.97e-49 179
Msa0480390 AT4G16630.1 32.222 360 230 10 57 407 189 543 3.14e-49 179
Msa0480390 AT3G58570.1 36.232 345 197 8 56 380 167 508 5.01e-49 176
Msa0480390 AT1G28180.1 33.236 343 211 8 65 397 3 337 1.18e-48 169
Msa0480390 AT3G58510.1 33.815 346 206 8 56 382 172 513 1.46e-46 169
Msa0480390 AT3G58510.3 33.815 346 206 8 56 382 172 513 1.46e-46 169
Msa0480390 AT3G58510.2 33.815 346 206 8 56 382 172 513 1.46e-46 169
Msa0480390 AT3G22330.1 31.638 354 204 10 56 382 111 453 1.52e-46 169
Msa0480390 AT3G01540.1 30.203 394 246 12 34 404 148 535 1.76e-46 169
Msa0480390 AT3G01540.4 30.203 394 246 12 34 404 148 535 2.01e-46 169
Msa0480390 AT3G01540.2 30.203 394 246 12 34 404 148 535 2.01e-46 169
Msa0480390 AT3G01540.3 30.203 394 246 12 34 404 148 535 2.01e-46 169
Msa0480390 AT3G22310.2 32.277 347 209 7 53 378 120 461 2.87e-46 168
Msa0480390 AT3G22310.1 32.277 347 209 7 53 378 120 461 3.46e-46 168
Msa0480390 AT5G14610.7 31.085 341 221 8 46 380 45 377 1.25e-45 165
Msa0480390 AT5G14610.3 31.085 341 221 8 46 380 45 377 1.25e-45 165
Msa0480390 AT2G42520.2 33.913 345 205 7 56 380 180 521 1.43e-45 167
Msa0480390 AT2G42520.1 33.913 345 205 7 56 380 180 521 1.43e-45 167
Msa0480390 AT2G42520.3 33.913 345 205 7 56 380 180 521 1.43e-45 167
Msa0480390 AT5G14610.6 32.456 342 215 10 46 380 176 508 1.97e-45 166
Msa0480390 AT5G14610.2 32.456 342 215 10 46 380 176 508 2.34e-45 166
Msa0480390 AT5G14610.5 32.456 342 215 10 46 380 184 516 3.22e-45 166
Msa0480390 AT5G14610.1 32.456 342 215 10 46 380 244 576 6.34e-45 166
Msa0480390 AT2G47330.1 31.940 335 214 8 57 382 250 579 1.82e-44 165
Msa0480390 AT1G20920.2 30.000 370 233 9 33 382 180 543 5.54e-44 164
Msa0480390 AT1G31970.1 33.038 339 211 7 57 382 136 471 1.31e-43 160
Msa0480390 AT1G20920.4 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0480390 AT1G20920.6 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0480390 AT1G20920.3 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0480390 AT1G20920.7 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0480390 AT1G20920.5 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0480390 AT1G20920.1 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0480390 AT3G06480.1 29.231 390 256 8 34 408 425 809 6.08e-43 161
Msa0480390 AT5G51280.1 29.912 341 222 7 55 382 166 502 4.47e-42 156
Msa0480390 AT4G33370.1 31.672 341 216 7 55 382 117 453 1.53e-41 154
Msa0480390 AT1G71370.1 29.762 336 217 7 61 381 42 373 9.74e-40 149
Msa0480390 AT1G77030.1 30.816 331 218 10 58 382 51 376 1.08e-38 149
Msa0480390 AT5G63630.1 28.869 336 219 6 65 382 84 417 2.52e-37 142
Msa0480390 AT5G05450.1 27.826 345 221 7 61 381 42 382 7.59e-37 142
Msa0480390 AT3G09720.2 30.159 378 236 14 42 408 150 510 1.13e-36 140
Msa0480390 AT3G09720.1 30.159 378 236 14 42 408 150 510 1.13e-36 140
Msa0480390 AT5G63630.2 28.869 336 219 6 65 382 278 611 1.74e-36 142
Msa0480390 AT3G02065.1 30.240 334 207 9 65 382 3 326 1.97e-36 137
Msa0480390 AT3G09620.1 30.270 370 203 12 33 382 385 719 3.22e-36 141
Msa0480390 AT3G09620.2 30.270 370 203 12 33 382 386 720 3.25e-36 141
Msa0480390 AT5G62190.1 32.407 324 197 10 72 380 133 449 7.74e-36 139
Msa0480390 AT3G02065.3 29.577 355 220 11 44 382 123 463 1.14e-35 137
Msa0480390 AT3G02065.2 29.577 355 220 11 44 382 123 463 1.14e-35 137
Msa0480390 AT5G08620.1 28.090 356 232 7 45 382 94 443 1.17e-35 138
Msa0480390 AT5G08610.1 28.010 382 241 7 33 382 366 745 2.66e-35 139
Msa0480390 AT3G18600.1 29.664 327 216 10 61 378 115 436 6.53e-35 136
Msa0480390 AT5G65900.1 30.678 339 198 13 61 378 180 502 1.96e-34 135
Msa0480390 AT1G12770.2 25.521 384 229 6 52 379 127 509 2.94e-34 134
Msa0480390 AT1G12770.1 25.521 384 229 6 52 379 127 509 2.94e-34 134
Msa0480390 AT1G51380.2 35.246 244 147 7 45 286 36 270 2.43e-33 126
Msa0480390 AT5G63120.1 29.932 294 191 8 57 341 187 474 3.77e-33 130
Msa0480390 AT5G63120.3 30.000 300 193 9 57 347 187 478 4.19e-33 130
Msa0480390 AT5G63120.4 30.000 300 193 9 57 347 187 478 4.19e-33 130
Msa0480390 AT5G63120.5 30.000 300 193 9 57 347 187 478 4.19e-33 130
Msa0480390 AT3G16840.2 29.358 436 230 11 53 416 210 639 4.85e-33 132
Msa0480390 AT3G16840.1 29.358 436 230 11 53 416 209 638 5.07e-33 132
Msa0480390 AT5G54910.1 28.070 342 219 11 61 386 97 427 3.18e-31 126
Msa0480390 AT1G63250.1 28.242 347 228 7 55 382 348 692 3.72e-31 126
Msa0480390 AT5G14610.4 30.476 315 201 11 46 353 184 487 2.13e-30 122
Msa0480390 AT3G06480.2 27.711 332 221 7 34 350 425 752 7.61e-29 119
Msa0480390 AT2G07750.1 28.144 334 211 9 72 382 412 739 2.09e-28 118
Msa0480390 AT2G40700.1 26.895 409 206 14 58 381 54 454 4.68e-28 117
Msa0480390 AT1G51380.4 33.641 217 134 6 45 259 36 244 8.63e-25 103
Msa0480390 AT1G51380.3 33.641 217 134 6 45 259 36 244 1.01e-24 103
Msa0480390 AT4G15850.1 26.954 371 208 10 74 382 74 443 3.93e-23 102
Msa0480390 AT5G19210.2 24.625 333 218 7 66 370 107 434 7.22e-22 97.8
Msa0480390 AT4G34910.1 25.549 364 219 9 57 370 68 429 2.23e-21 97.1
Msa0480390 AT3G06980.1 24.862 362 225 9 57 381 396 747 4.41e-21 96.3
Msa0480390 AT1G71280.2 28.378 296 169 12 61 343 43 308 1.51e-18 86.7
Msa0480390 AT1G71280.1 28.378 296 169 12 61 343 43 308 4.68e-18 86.3
Msa0480390 AT5G19210.1 24.231 260 168 6 135 370 23 277 1.06e-13 72.0
Msa0480390 AT5G19210.3 24.231 260 168 6 135 370 23 277 1.06e-13 72.0

Find 123 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTCTTGTATACTTTAAT+AGG 0.207564 3_3:+85665038 Msa0480390:three_prime_UTR
CAGCAGATTGATCCTGTTCC+AGG 0.258533 3_3:+85661173 Msa0480390:CDS
TTCTCAAACCAGAGCTTCTT+CGG 0.267756 3_3:+85659814 Msa0480390:CDS
TATCAAATCATTCATGATTT+CGG 0.280084 3_3:+85665144 Msa0480390:three_prime_UTR
ATAAAACAAACCTTTCTTCT+TGG 0.281030 3_3:-85662731 None:intergenic
ATCATAGTGGATATTGCTTT+GGG 0.302530 3_3:+85664769 Msa0480390:exon
GTTGGCCGAGCTGGAAGATT+TGG 0.303568 3_3:+85663854 Msa0480390:CDS
TCCTCGTAAGTTTCGTCCTT+TGG 0.307307 3_3:-85659547 None:intergenic
CATCATAGTGGATATTGCTT+TGG 0.320279 3_3:+85664768 Msa0480390:exon
TAAAACAAACCTTTCTTCTT+GGG 0.342819 3_3:-85662730 None:intergenic
GACTTTAGCTCCGTTGGTAT+CGG 0.343036 3_3:-85659608 None:intergenic
TTTGTTCTGAAGTGTACTTT+TGG 0.361228 3_3:+85665180 Msa0480390:three_prime_UTR
GAAGCCAAGTTAACCCTTCA+TGG 0.374844 3_3:+85662422 Msa0480390:CDS
GTAATTTGTCAAGCTAAATC+TGG 0.375081 3_3:+85661113 Msa0480390:CDS
GATTCTTGTAGCTACAGATT+TGG 0.387454 3_3:+85663645 Msa0480390:CDS
GGGGCAACACTTGGTCCGTT+TGG 0.390379 3_3:+85664789 Msa0480390:three_prime_UTR
AAATGTAATTGCAAGGCCTT+TGG 0.392224 3_3:-85663879 None:intergenic
TATGTTGGAATTCACAGTTC+AGG 0.397914 3_3:+85659777 Msa0480390:CDS
TCTCAAACCAGAGCTTCTTC+GGG 0.401740 3_3:+85659815 Msa0480390:CDS
ACTTTACAGGTTGGCCGAGC+TGG 0.402167 3_3:+85663845 Msa0480390:intron
GCCAATGCTAGTATTCTTCC+AGG 0.402281 3_3:-85661465 None:intergenic
TGTTAGTAGAGCAGCTGAGC+TGG 0.405799 3_3:+85662653 Msa0480390:CDS
CAAATTGTTGTTGGAACGCC+TGG 0.413036 3_3:+85661447 Msa0480390:CDS
CGGTGATGCTGTTGTTGAAC+TGG 0.416246 3_3:+85665011 Msa0480390:three_prime_UTR
ACCATCTATTGCCAGATAAT+GGG 0.420328 3_3:+85659520 Msa0480390:intron
GTTTCAAGGAGGGGCATACT+AGG 0.426560 3_3:+85663623 Msa0480390:CDS
TTGATAGAAATGTGAGGAAA+AGG 0.428212 3_3:-85665127 None:intergenic
CCAGAGTGAATGCATATAGA+TGG 0.428290 3_3:-85662702 None:intergenic
GTGTTAAACATTCTGTATGA+TGG 0.430791 3_3:+85664924 Msa0480390:three_prime_UTR
TAACAACTTGGTTGAAGTCT+AGG 0.431244 3_3:-85662617 None:intergenic
GCAGAAACTTGGCCTGGAAC+AGG 0.433044 3_3:-85661185 None:intergenic
AAGTAAGTGTCTGCAGAATC+AGG 0.433468 3_3:-85663721 None:intergenic
ACTTTAGCTCCGTTGGTATC+GGG 0.446549 3_3:-85659607 None:intergenic
TATTGCTTTGGGGCAACACT+TGG 0.446693 3_3:+85664780 Msa0480390:three_prime_UTR
ACCCTCATCTACTGGATTTG+TGG 0.452586 3_3:+85664823 Msa0480390:three_prime_UTR
ACCGTTGACTTTAGCTCCGT+TGG 0.454754 3_3:-85659614 None:intergenic
TGATAAGATGCTTGAATCAC+TGG 0.464819 3_3:+85661542 Msa0480390:CDS
TGTAGGTTGAAGCGTTATAG+AGG 0.469448 3_3:+85663601 Msa0480390:intron
GCGTTCCAACAACAATTTGA+GGG 0.474065 3_3:-85661443 None:intergenic
CACAAGAGAACTAGCTTACC+AGG 0.475324 3_3:+85661223 Msa0480390:CDS
TAACGATGAGCTAAAGGAAC+TGG 0.484575 3_3:-85665286 None:intergenic
GAGTGCCCTCAAATTGTTGT+TGG 0.484980 3_3:+85661438 Msa0480390:CDS
GTATGAGTACCCTCATCTAC+TGG 0.485739 3_3:+85664815 Msa0480390:three_prime_UTR
GAAGCGTTATAGAGGTTTCA+AGG 0.487117 3_3:+85663609 Msa0480390:CDS
TGTCAAGCTAAATCTGGAAT+GGG 0.490633 3_3:+85661119 Msa0480390:CDS
CAGTCCATGAAGGGTTAACT+TGG 0.491161 3_3:-85662426 None:intergenic
TTGTCAAGCTAAATCTGGAA+TGG 0.491537 3_3:+85661118 Msa0480390:CDS
CTGCAGACACTTACTTGCAC+AGG 0.493193 3_3:+85663728 Msa0480390:CDS
ACGATAGCCCGAAGAAGCTC+TGG 0.493356 3_3:-85659822 None:intergenic
CAAGAAGATCATTCAACTTG+CGG 0.494607 3_3:-85662590 None:intergenic
GCTACAGATTTGGTTGGTAG+AGG 0.500164 3_3:+85663655 Msa0480390:CDS
ACAGAACAAGTGCAGAAACT+TGG 0.502577 3_3:-85661196 None:intergenic
ACCATGCTGATGTCGGGCCT+AGG 0.510799 3_3:+85664883 Msa0480390:three_prime_UTR
TCCGTGTAACGATGAGCTAA+AGG 0.511745 3_3:-85665292 None:intergenic
GATTTGACCATGCTGATGTC+GGG 0.511765 3_3:+85664877 Msa0480390:three_prime_UTR
CATCATAACTTGCTTATCGT+GGG 0.512480 3_3:-85661704 None:intergenic
AAGACAGCAACCTTCAGATC+GGG 0.512540 3_3:-85661369 None:intergenic
ACAAGTGCAGAAACTTGGCC+TGG 0.514338 3_3:-85661191 None:intergenic
CAACACTTGGTCCGTTTGGA+CGG 0.514563 3_3:+85664793 Msa0480390:three_prime_UTR
GCACTACATCAAATTGAAAG+AGG 0.517823 3_3:+85662557 Msa0480390:intron
AACCCTTCATGGACTGGTGC+AGG 0.517866 3_3:+85662433 Msa0480390:CDS
CAAAGCAATATCCACTATGA+TGG 0.521600 3_3:-85664767 None:intergenic
CTTGTAGCTACAGATTTGGT+TGG 0.522187 3_3:+85663649 Msa0480390:CDS
AAATCATTCATGATTTCGGA+TGG 0.522299 3_3:+85665148 Msa0480390:three_prime_UTR
GAAGAATACTAGCATTGGCT+AGG 0.526509 3_3:+85661469 Msa0480390:CDS
GTGATTTGCAGGTTCAGTCA+AGG 0.528181 3_3:+85664000 Msa0480390:intron
AACAAAGTACAACACAACTA+AGG 0.529373 3_3:-85664958 None:intergenic
CTACAGATTTGGTTGGTAGA+GGG 0.530961 3_3:+85663656 Msa0480390:CDS
CCATCTATATGCATTCACTC+TGG 0.537546 3_3:+85662702 Msa0480390:CDS
CAAGTTAACCCTTCATGGAC+TGG 0.538235 3_3:+85662427 Msa0480390:CDS
TGGTTCCAAATCTTCCAGCT+CGG 0.539236 3_3:-85663859 None:intergenic
AAAGACATGAGCAACAAAAC+CGG 0.540312 3_3:-85665079 None:intergenic
CTGGCATGTCCCAAGAAGAA+AGG 0.541548 3_3:+85662721 Msa0480390:CDS
ACCTCAAGCAATCCTCGGAA+TGG 0.545341 3_3:+85661088 Msa0480390:CDS
GTAGAGGTATCAATCTGCTC+AGG 0.546365 3_3:-85664047 None:intergenic
GGCGTTCCAACAACAATTTG+AGG 0.547645 3_3:-85661444 None:intergenic
AACAACTTGGTTGAAGTCTA+GGG 0.548156 3_3:-85662616 None:intergenic
GTTATAGAGGTTTCAAGGAG+GGG 0.549962 3_3:+85663614 Msa0480390:CDS
GCCTGGAAGAATACTAGCAT+TGG 0.549976 3_3:+85661464 Msa0480390:CDS
TCATCAACATAAATTTCCAT+AGG 0.552344 3_3:-85662398 None:intergenic
CGCCACAAATCCAGTAGATG+AGG 0.556237 3_3:-85664825 None:intergenic
TGATTTGACCATGCTGATGT+CGG 0.556376 3_3:+85664876 Msa0480390:three_prime_UTR
AGATATGCCATGAGTTTGAG+AGG 0.557167 3_3:+85661331 Msa0480390:intron
GGGTACTCATACCGTCCAAA+CGG 0.561945 3_3:-85664804 None:intergenic
ACATCATAACTTGCTTATCG+TGG 0.563979 3_3:-85661705 None:intergenic
TCCTTTAGCTCATCGTTACA+CGG 0.564276 3_3:+85665291 Msa0480390:three_prime_UTR
AAAGTGCTTACTGTAGGTAG+AGG 0.564836 3_3:-85664063 None:intergenic
TACTAAACCTCTCAAACTCA+TGG 0.569538 3_3:-85661338 None:intergenic
TGCATACCTCAAGCAATCCT+CGG 0.569749 3_3:+85661083 Msa0480390:CDS
AAAGACAGCAACCTTCAGAT+CGG 0.576558 3_3:-85661370 None:intergenic
CGTTATAGAGGTTTCAAGGA+GGG 0.577094 3_3:+85663613 Msa0480390:CDS
CTACCTGCACCAGTCCATGA+AGG 0.577194 3_3:-85662436 None:intergenic
ATGAAACAAATGTAATTGCA+AGG 0.583398 3_3:-85663886 None:intergenic
TACCTACTTACCCGATCTGA+AGG 0.587362 3_3:+85661359 Msa0480390:CDS
GATCAACGGAAAAGTAGCCT+AGG 0.594351 3_3:-85664900 None:intergenic
GCTGGAAGATTTGGAACCAA+AGG 0.594660 3_3:+85663863 Msa0480390:CDS
CCAGATAATGGGAGAACCAA+AGG 0.598291 3_3:+85659531 Msa0480390:intron
GTTGAAACAGAATATCGTAC+CGG 0.606839 3_3:+85665060 Msa0480390:three_prime_UTR
GACAAATTACATCCATTCCG+AGG 0.613516 3_3:-85661100 None:intergenic
CTCATCTACTGGATTTGTGG+CGG 0.619714 3_3:+85664826 Msa0480390:three_prime_UTR
TGCAGACACTTACTTGCACA+GGG 0.621788 3_3:+85663729 Msa0480390:CDS
AGGAACTGGTAGCATAGACA+TGG 0.626266 3_3:-85665272 None:intergenic
TACCTGCACCAGTCCATGAA+GGG 0.627063 3_3:-85662435 None:intergenic
AACCTTCAGATCGGGTAAGT+AGG 0.628828 3_3:-85661361 None:intergenic
AAGAATACTAGCATTGGCTA+GGG 0.631042 3_3:+85661470 Msa0480390:CDS
GAATGTTTAACACCGATCAA+CGG 0.635548 3_3:-85664914 None:intergenic
CATGTGCAGTGCCATCATAG+TGG 0.639227 3_3:+85664756 Msa0480390:intron
ATCATAACTTGCTTATCGTG+GGG 0.649459 3_3:-85661703 None:intergenic
GCCACAAATCCAGTAGATGA+GGG 0.650591 3_3:-85664824 None:intergenic
GCCTAGGCCCGACATCAGCA+TGG 0.650908 3_3:-85664884 None:intergenic
TCCATTCCGAGGATTGCTTG+AGG 0.655490 3_3:-85661089 None:intergenic
GACAAAGCTCCCGATACCAA+CGG 0.662798 3_3:+85659598 Msa0480390:CDS
GGTCAATATCAAAGTTCACA+AGG 0.667495 3_3:+85661401 Msa0480390:CDS
ACCAAAGGACGAAACTTACG+AGG 0.668863 3_3:+85659546 Msa0480390:CDS
ACTGGTAGCATAGACATGGA+AGG 0.671581 3_3:-85665268 None:intergenic
ACCAACGGAGCTAAAGTCAA+CGG 0.673145 3_3:+85659613 Msa0480390:CDS
GGAAGAGCTTCTCGATTACG+AGG 0.681000 3_3:+85659567 Msa0480390:CDS
TCATAGTGGATATTGCTTTG+GGG 0.681035 3_3:+85664770 Msa0480390:exon
GATAAGATGCTTGAATCACT+GGG 0.702068 3_3:+85661543 Msa0480390:CDS
AGAGCTTCTCGATTACGAGG+AGG 0.710082 3_3:+85659570 Msa0480390:CDS
AATGATTTGATAGAAATGTG+AGG 0.712968 3_3:-85665133 None:intergenic
GCGTTATAGAGGTTTCAAGG+AGG 0.725932 3_3:+85663612 Msa0480390:CDS
AGTCGAGAGAACAAAGACAG+CGG 0.750658 3_3:-85661147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAACATAATATTATAA+AGG - chr3_3:85660683-85660702 None:intergenic 10.0%
!! ACATTAAACAAAAATTATAA+AGG - chr3_3:85660854-85660873 None:intergenic 10.0%
!!! AATCTTATTATTTTATTTGT+AGG + chr3_3:85663584-85663603 Msa0480390:intron 10.0%
!!! ATTTATTTTCAATTTTTCTT+AGG + chr3_3:85664153-85664172 Msa0480390:intron 10.0%
!! ACATCATAAATATAAAAATT+AGG - chr3_3:85664351-85664370 None:intergenic 10.0%
!!! AATGACAAAAAATTGATAAT+TGG - chr3_3:85659224-85659243 None:intergenic 15.0%
!!! TCTAAATCTCTATTAATTTT+AGG + chr3_3:85659453-85659472 Msa0480390:intron 15.0%
!!! CTAAATCTCTATTAATTTTA+GGG + chr3_3:85659454-85659473 Msa0480390:intron 15.0%
!! TGAAATTTCTTAAAAGAATA+GGG + chr3_3:85660182-85660201 Msa0480390:intron 15.0%
!! AATATTATGTTGAATTACTA+TGG + chr3_3:85660687-85660706 Msa0480390:intron 15.0%
!!! TACTTTTTTCAAACATTTTT+GGG + chr3_3:85662830-85662849 Msa0480390:intron 15.0%
!! ATAAATGAAAGATCAAAATA+AGG - chr3_3:85663775-85663794 None:intergenic 15.0%
!!! TATTTACTTTCACTAAATTT+TGG + chr3_3:85663792-85663811 Msa0480390:intron 15.0%
!!! TTTTTTATCAACATTACAAA+AGG + chr3_3:85664277-85664296 Msa0480390:intron 15.0%
!!! TTTTCTCGTTAAATTTTTTT+TGG - chr3_3:85664615-85664634 None:intergenic 15.0%
!!! AAAAATTGATAATTGGCTAA+TGG - chr3_3:85659217-85659236 None:intergenic 20.0%
!! TTTGTAATAAGTAAAATCAG+TGG - chr3_3:85659676-85659695 None:intergenic 20.0%
!!! TGTATCTTTGTTCTTTTTTA+TGG + chr3_3:85659747-85659766 Msa0480390:intron 20.0%
!! TAATATCCTTAAATTCTCAT+TGG + chr3_3:85660031-85660050 Msa0480390:intron 20.0%
!! TAATATTAACAGATGTGATT+TGG + chr3_3:85660131-85660150 Msa0480390:intron 20.0%
!! AATATTAACAGATGTGATTT+GGG + chr3_3:85660132-85660151 Msa0480390:intron 20.0%
!! GTGAAATTTCTTAAAAGAAT+AGG + chr3_3:85660181-85660200 Msa0480390:intron 20.0%
!!! GAGGGATTTAATTTTAAAAT+TGG + chr3_3:85660213-85660232 Msa0480390:intron 20.0%
!!! GGATTTAATTTTAAAATTGG+AGG + chr3_3:85660216-85660235 Msa0480390:intron 20.0%
!!! ATGCTTTAAGTTGTTTTTAT+AGG + chr3_3:85660422-85660441 Msa0480390:intron 20.0%
!! AAGGAAAAAATAAAGAGAAA+GGG - chr3_3:85660757-85660776 None:intergenic 20.0%
!! AAAGGAAAAAATAAAGAGAA+AGG - chr3_3:85660758-85660777 None:intergenic 20.0%
!! TATATACAAAAATTTCGCAA+AGG - chr3_3:85660776-85660795 None:intergenic 20.0%
!!! TTTGCGAAATTTTTGTATAT+AGG + chr3_3:85660775-85660794 Msa0480390:intron 20.0%
!!! GTATTTTCATATAAATGACA+AGG + chr3_3:85660880-85660899 Msa0480390:intron 20.0%
!!! TTTTTTTTTTAACACTCAAC+AGG + chr3_3:85660916-85660935 Msa0480390:intron 20.0%
!! TAATATTCAAACTAAACAGA+AGG - chr3_3:85661584-85661603 None:intergenic 20.0%
!!! GTACTTTTTTCAAACATTTT+TGG + chr3_3:85662829-85662848 Msa0480390:intron 20.0%
!!! ACTTTTTTCAAACATTTTTG+GGG + chr3_3:85662831-85662850 Msa0480390:intron 20.0%
!! TTAGTGTTAATACATTTAAG+TGG - chr3_3:85662876-85662895 None:intergenic 20.0%
!!! TTTTTAACTTTGAATGACAA+AGG + chr3_3:85663387-85663406 Msa0480390:intron 20.0%
!! AATAGAATAACAGTAAAACT+GGG - chr3_3:85663525-85663544 None:intergenic 20.0%
!! TAATAGAATAACAGTAAAAC+TGG - chr3_3:85663526-85663545 None:intergenic 20.0%
!!! TTTCACTAAATTTTGGTTTA+GGG + chr3_3:85663799-85663818 Msa0480390:intron 20.0%
!! AACATAATTAGAAATGCTAA+TGG - chr3_3:85663976-85663995 None:intergenic 20.0%
!! TTTATATTTATGATGTGAAC+TGG + chr3_3:85664355-85664374 Msa0480390:intron 20.0%
!!! TTTTTATGTTTCATGATGTT+AGG + chr3_3:85664427-85664446 Msa0480390:intron 20.0%
!!! CATATGTTCTACATTTTTTA+GGG - chr3_3:85664582-85664601 None:intergenic 20.0%
!!! ACATATGTTCTACATTTTTT+AGG - chr3_3:85664583-85664602 None:intergenic 20.0%
!! TATCAAATCATTCATGATTT+CGG + chr3_3:85665144-85665163 Msa0480390:three_prime_UTR 20.0%
!! TAATTGGCTAATGGATATAA+AGG - chr3_3:85659208-85659227 None:intergenic 25.0%
! TGTTAGACGAAAAAGAATTT+GGG - chr3_3:85659307-85659326 None:intergenic 25.0%
! TTGTTAGACGAAAAAGAATT+TGG - chr3_3:85659308-85659327 None:intergenic 25.0%
!!! TCTTTGTTCTTTTTTATGGT+AGG + chr3_3:85659751-85659770 Msa0480390:intron 25.0%
!!! CTTTGTTCTTTTTTATGGTA+GGG + chr3_3:85659752-85659771 Msa0480390:intron 25.0%
!!! TTTGTTCTTTTTTATGGTAG+GGG + chr3_3:85659753-85659772 Msa0480390:intron 25.0%
! ATCATTCAAAAATTTGTCGA+AGG + chr3_3:85660245-85660264 Msa0480390:intron 25.0%
! ATAAGCTTATTTATCCAAAC+AGG - chr3_3:85660310-85660329 None:intergenic 25.0%
!!! GTTGTTTTTATAGGCTATAT+TGG + chr3_3:85660431-85660450 Msa0480390:intron 25.0%
! AATGAACGAATGAAAAAAAC+AGG - chr3_3:85660660-85660679 None:intergenic 25.0%
! TAAACGAATGAAAAAACAGT+CGG - chr3_3:85660829-85660848 None:intergenic 25.0%
!!! TTTAGTTTGAATATTACCAC+TGG + chr3_3:85661588-85661607 Msa0480390:intron 25.0%
! TAAGAACAATAAAAACCACA+TGG - chr3_3:85661628-85661647 None:intergenic 25.0%
! ATCAATCTTTACTTCTGATA+GGG + chr3_3:85661879-85661898 Msa0480390:intron 25.0%
! TGTTAAGTAAAATTGGACAA+AGG - chr3_3:85661927-85661946 None:intergenic 25.0%
! TTTGACAGTAAATCATGTTA+GGG - chr3_3:85662364-85662383 None:intergenic 25.0%
! ATTTGACAGTAAATCATGTT+AGG - chr3_3:85662365-85662384 None:intergenic 25.0%
! TCATCAACATAAATTTCCAT+AGG - chr3_3:85662401-85662420 None:intergenic 25.0%
! TATAAGCAAACAACTTGAAA+AGG - chr3_3:85662463-85662482 None:intergenic 25.0%
!!! ACAGATAAGACATTTTAAGA+GGG - chr3_3:85662509-85662528 None:intergenic 25.0%
!! TACAGATAAGACATTTTAAG+AGG - chr3_3:85662510-85662529 None:intergenic 25.0%
!! TTTTCACAAAGATAACAACT+TGG - chr3_3:85662632-85662651 None:intergenic 25.0%
! TAAAACAAACCTTTCTTCTT+GGG - chr3_3:85662733-85662752 None:intergenic 25.0%
! ATAAAACAAACCTTTCTTCT+TGG - chr3_3:85662734-85662753 None:intergenic 25.0%
!! TTCATGTTTTGCAATTCTAT+TGG + chr3_3:85662786-85662805 Msa0480390:intron 25.0%
!! TGTGAGCTTTTTGAATATAA+GGG + chr3_3:85663005-85663024 Msa0480390:intron 25.0%
!! AGCATTGAATAAATCTCTTA+GGG - chr3_3:85663268-85663287 None:intergenic 25.0%
!! TAGCATTGAATAAATCTCTT+AGG - chr3_3:85663269-85663288 None:intergenic 25.0%
! TTGTTCTTTCAAATCAAAAG+TGG - chr3_3:85663350-85663369 None:intergenic 25.0%
! GAATTGTCAATAGACAATTA+AGG - chr3_3:85663449-85663468 None:intergenic 25.0%
! ATAGAATAACAGTAAAACTG+GGG - chr3_3:85663524-85663543 None:intergenic 25.0%
!!! CTTTCACTAAATTTTGGTTT+AGG + chr3_3:85663798-85663817 Msa0480390:intron 25.0%
! ATGAAACAAATGTAATTGCA+AGG - chr3_3:85663889-85663908 None:intergenic 25.0%
! ATTTGTGCTTTCCTAAAATT+TGG + chr3_3:85664304-85664323 Msa0480390:intron 25.0%
! AAATGTAGAACATATGTTTG+TGG + chr3_3:85664586-85664605 Msa0480390:intron 25.0%
! AATATTAATCTCTTCTGACT+TGG + chr3_3:85664726-85664745 Msa0480390:intron 25.0%
! ACACTCTTGTATACTTTAAT+AGG + chr3_3:85665038-85665057 Msa0480390:three_prime_UTR 25.0%
! AATGATTTGATAGAAATGTG+AGG - chr3_3:85665136-85665155 None:intergenic 25.0%
!!! GCTCAAAATCTGTTTTTTTT+CGG + chr3_3:85665206-85665225 Msa0480390:three_prime_UTR 25.0%
!!! CTCAAAATCTGTTTTTTTTC+GGG + chr3_3:85665207-85665226 Msa0480390:three_prime_UTR 25.0%
!!! TATTTTCAGATTGATTTTGC+AGG + chr3_3:85665234-85665253 Msa0480390:three_prime_UTR 25.0%
TTAGACGAAAAAGAATTTGG+GGG - chr3_3:85659305-85659324 None:intergenic 30.0%
GTTAGACGAAAAAGAATTTG+GGG - chr3_3:85659306-85659325 None:intergenic 30.0%
!!! ATTCTAGGGTTTTAGAAGAA+GGG - chr3_3:85659423-85659442 None:intergenic 30.0%
!!! TATTCTAGGGTTTTAGAAGA+AGG - chr3_3:85659424-85659443 None:intergenic 30.0%
!! TAGAGATAGAGAGTATTCTA+GGG - chr3_3:85659437-85659456 None:intergenic 30.0%
!! TTAGAGATAGAGAGTATTCT+AGG - chr3_3:85659438-85659457 None:intergenic 30.0%
ACAAGAAACAACTTACTTCT+TGG - chr3_3:85659647-85659666 None:intergenic 30.0%
ACTACATAGAAGAAACATCA+TGG - chr3_3:85659724-85659743 None:intergenic 30.0%
! GCTGTACTTTTCTACAATTT+TGG + chr3_3:85659917-85659936 Msa0480390:intron 30.0%
TTATGATGATTCCTGTAGTA+TGG + chr3_3:85659991-85660010 Msa0480390:intron 30.0%
AACAAATTACTCCATACTAC+AGG - chr3_3:85660005-85660024 None:intergenic 30.0%
TATCCTTAAATTCTCATTGG+AGG + chr3_3:85660034-85660053 Msa0480390:intron 30.0%
AAACCTCCAATGAGAATTTA+AGG - chr3_3:85660040-85660059 None:intergenic 30.0%
! TTGGAGGTTTTTGATAAATG+TGG + chr3_3:85660050-85660069 Msa0480390:intron 30.0%
! TGGAGGTTTTTGATAAATGT+GGG + chr3_3:85660051-85660070 Msa0480390:intron 30.0%
! GTTTTTATAGGCTATATTGG+AGG + chr3_3:85660434-85660453 Msa0480390:intron 30.0%
GTGAACAAGACTTAATCATA+GGG - chr3_3:85660591-85660610 None:intergenic 30.0%
AGTGAACAAGACTTAATCAT+AGG - chr3_3:85660592-85660611 None:intergenic 30.0%
AATAAAGAGAAAGGGAGTAA+GGG - chr3_3:85660749-85660768 None:intergenic 30.0%
AAATAAAGAGAAAGGGAGTA+AGG - chr3_3:85660750-85660769 None:intergenic 30.0%
! GCGAAATTTTTGTATATAGG+TGG + chr3_3:85660778-85660797 Msa0480390:intron 30.0%
AAACGAATGAAAAAACAGTC+GGG - chr3_3:85660828-85660847 None:intergenic 30.0%
!! CAAATTAAAAGCGTCAGAAA+TGG + chr3_3:85660994-85661013 Msa0480390:intron 30.0%
!!! TGGTTTATTTTACTTACCGT+TGG + chr3_3:85661014-85661033 Msa0480390:intron 30.0%
GATGATGAAGCAAAGAAAAA+AGG - chr3_3:85661050-85661069 None:intergenic 30.0%
! GTAATTTGTCAAGCTAAATC+TGG + chr3_3:85661113-85661132 Msa0480390:CDS 30.0%
TAGCTTACCAGGTATTTATT+GGG + chr3_3:85661234-85661253 Msa0480390:intron 30.0%
!!! ATGTTTTTTTTGCAGACATG+AGG + chr3_3:85661650-85661669 Msa0480390:intron 30.0%
!!! GCATAAATTTTTTGCAGACT+GGG - chr3_3:85661759-85661778 None:intergenic 30.0%
!!! TGCATAAATTTTTTGCAGAC+TGG - chr3_3:85661760-85661779 None:intergenic 30.0%
ATGCAAGATGTAATTTCTCA+TGG + chr3_3:85661775-85661794 Msa0480390:intron 30.0%
TCAAACAACTAAAAACCTCA+GGG - chr3_3:85661846-85661865 None:intergenic 30.0%
TTCAAACAACTAAAAACCTC+AGG - chr3_3:85661847-85661866 None:intergenic 30.0%
!! TTTTAGTTGTTTGAATGCTG+TGG + chr3_3:85661852-85661871 Msa0480390:intron 30.0%
CATCAATCTTTACTTCTGAT+AGG + chr3_3:85661878-85661897 Msa0480390:intron 30.0%
AGCAGGTTGTTAAGTAAAAT+TGG - chr3_3:85661934-85661953 None:intergenic 30.0%
! AATTTTACTTAACAACCTGC+TGG + chr3_3:85661933-85661952 Msa0480390:intron 30.0%
! TCTCTAATATTTGCTAGTGT+TGG + chr3_3:85662082-85662101 Msa0480390:intron 30.0%
! CTCTAATATTTGCTAGTGTT+GGG + chr3_3:85662083-85662102 Msa0480390:intron 30.0%
!!! ATGGGTTTTTTTCATTGTGT+TGG + chr3_3:85662107-85662126 Msa0480390:intron 30.0%
!!! TGGGTTTTTTTCATTGTGTT+GGG + chr3_3:85662108-85662127 Msa0480390:intron 30.0%
!!! TTGTTCCTGTCATTTTTCTT+TGG + chr3_3:85662196-85662215 Msa0480390:intron 30.0%
!!! TGTTCCTGTCATTTTTCTTT+GGG + chr3_3:85662197-85662216 Msa0480390:intron 30.0%
ATAAATTTCCATAGGCTGAA+AGG - chr3_3:85662393-85662412 None:intergenic 30.0%
!! CAGATAAGACATTTTAAGAG+GGG - chr3_3:85662508-85662527 None:intergenic 30.0%
GTTAATACATTTAAGTGGCA+TGG - chr3_3:85662871-85662890 None:intergenic 30.0%
TAATCTGTAGCTCACAATAA+TGG + chr3_3:85662893-85662912 Msa0480390:intron 30.0%
! GTGTGAGCTTTTTGAATATA+AGG + chr3_3:85663004-85663023 Msa0480390:intron 30.0%
! TTTGAATATAAGGGTGTGTT+TGG + chr3_3:85663014-85663033 Msa0480390:intron 30.0%
ATGCTATTATGACATTACTG+AGG + chr3_3:85663283-85663302 Msa0480390:intron 30.0%
TTAACTTTGAATGACAAAGG+AGG + chr3_3:85663390-85663409 Msa0480390:intron 30.0%
GTTATTCTATTAGAGTGAAG+TGG + chr3_3:85663534-85663553 Msa0480390:intron 30.0%
TTGATGTTCTCAACAATGTA+AGG + chr3_3:85663921-85663940 Msa0480390:intron 30.0%
TGATGTTCTCAACAATGTAA+GGG + chr3_3:85663922-85663941 Msa0480390:intron 30.0%
!! TTATGTTTGTTGTGATTTGC+AGG + chr3_3:85663989-85664008 Msa0480390:intron 30.0%
!! AATGAAAAAGTGCTTACTGT+AGG - chr3_3:85664072-85664091 None:intergenic 30.0%
!! TCCTGTATTGATTTGTTTGT+AGG + chr3_3:85664105-85664124 Msa0480390:intron 30.0%
TCCTACAAACAAATCAATAC+AGG - chr3_3:85664109-85664128 None:intergenic 30.0%
!! GTATTGATTTGTTTGTAGGA+CGG + chr3_3:85664109-85664128 Msa0480390:intron 30.0%
CGGAATTGGAATTATAAGTT+AGG + chr3_3:85664129-85664148 Msa0480390:intron 30.0%
GTATTCCATTCGATTTCTAA+TGG + chr3_3:85664217-85664236 Msa0480390:intron 30.0%
ATTGACCATTAGAAATCGAA+TGG - chr3_3:85664225-85664244 None:intergenic 30.0%
AATCGTGCAAAATTAGCAAA+TGG - chr3_3:85664256-85664275 None:intergenic 30.0%
CAGCTAAGAAAATGAGTATT+TGG - chr3_3:85664403-85664422 None:intergenic 30.0%
TTTCTTTGTACTTGAGAGTT+AGG + chr3_3:85664462-85664481 Msa0480390:intron 30.0%
ATCAAACCAATTATGCAACT+TGG - chr3_3:85664669-85664688 None:intergenic 30.0%
!! ATCATAGTGGATATTGCTTT+GGG + chr3_3:85664769-85664788 Msa0480390:exon 30.0%
GTGTTAAACATTCTGTATGA+TGG + chr3_3:85664924-85664943 Msa0480390:three_prime_UTR 30.0%
AACAAAGTACAACACAACTA+AGG - chr3_3:85664961-85664980 None:intergenic 30.0%
!! TTTACGATCATGTTTTGAGT+TGG + chr3_3:85664981-85665000 Msa0480390:three_prime_UTR 30.0%
!!! TGTTTTGAGTTGGTATTTGA+CGG + chr3_3:85664991-85665010 Msa0480390:three_prime_UTR 30.0%
!!! TCATGTCTTTGGTGTTTTTA+CGG + chr3_3:85665092-85665111 Msa0480390:three_prime_UTR 30.0%
TTGATAGAAATGTGAGGAAA+AGG - chr3_3:85665130-85665149 None:intergenic 30.0%
AAATCATTCATGATTTCGGA+TGG + chr3_3:85665148-85665167 Msa0480390:three_prime_UTR 30.0%
!!! TTTGTTCTGAAGTGTACTTT+TGG + chr3_3:85665180-85665199 Msa0480390:three_prime_UTR 30.0%
GAATTGAGGAATTAGGGTTA+GGG - chr3_3:85659355-85659374 None:intergenic 35.0%
TGAATTGAGGAATTAGGGTT+AGG - chr3_3:85659356-85659375 None:intergenic 35.0%
GGTTGTGAATTGAGGAATTA+GGG - chr3_3:85659361-85659380 None:intergenic 35.0%
AGGTTGTGAATTGAGGAATT+AGG - chr3_3:85659362-85659381 None:intergenic 35.0%
GAAATGAAAGAGTGAAAGGA+AGG - chr3_3:85659382-85659401 None:intergenic 35.0%
ACCATCTATTGCCAGATAAT+GGG + chr3_3:85659520-85659539 Msa0480390:intron 35.0%
TATGTTGGAATTCACAGTTC+AGG + chr3_3:85659777-85659796 Msa0480390:CDS 35.0%
TTCAGAAGGATGTTCAAATC+CGG - chr3_3:85659853-85659872 None:intergenic 35.0%
ATGGAAAATTTGCCTTCAGA+AGG - chr3_3:85659867-85659886 None:intergenic 35.0%
! ATGTGATTTGGGTTTGAAGA+TGG + chr3_3:85660143-85660162 Msa0480390:intron 35.0%
TTAAAAGAATAGGGTAGCAG+TGG + chr3_3:85660191-85660210 Msa0480390:intron 35.0%
! CTATATGTGAGGTGCTAATT+TGG - chr3_3:85660272-85660291 None:intergenic 35.0%
AATTAGCACCTCACATATAG+TGG + chr3_3:85660272-85660291 Msa0480390:intron 35.0%
!! GTCTTGTTCACTCTCATTTT+AGG + chr3_3:85660600-85660619 Msa0480390:intron 35.0%
ATAAAGAGAAAGGGAGTAAG+GGG - chr3_3:85660748-85660767 None:intergenic 35.0%
CATCTATCACAATACTGTTC+TGG + chr3_3:85660944-85660963 Msa0480390:intron 35.0%
TTGTCAAGCTAAATCTGGAA+TGG + chr3_3:85661118-85661137 Msa0480390:CDS 35.0%
! TGTCAAGCTAAATCTGGAAT+GGG + chr3_3:85661119-85661138 Msa0480390:CDS 35.0%
CTAGCTTACCAGGTATTTAT+TGG + chr3_3:85661233-85661252 Msa0480390:intron 35.0%
AGCTTACCAGGTATTTATTG+GGG + chr3_3:85661235-85661254 Msa0480390:intron 35.0%
ATGGCATATCTGAAAGGAAA+AGG - chr3_3:85661322-85661341 None:intergenic 35.0%
AAACTCATGGCATATCTGAA+AGG - chr3_3:85661328-85661347 None:intergenic 35.0%
TACTAAACCTCTCAAACTCA+TGG - chr3_3:85661341-85661360 None:intergenic 35.0%
GGTCAATATCAAAGTTCACA+AGG + chr3_3:85661401-85661420 Msa0480390:CDS 35.0%
!! AAGAATACTAGCATTGGCTA+GGG + chr3_3:85661470-85661489 Msa0480390:CDS 35.0%
TGATAAGATGCTTGAATCAC+TGG + chr3_3:85661542-85661561 Msa0480390:CDS 35.0%
GATAAGATGCTTGAATCACT+GGG + chr3_3:85661543-85661562 Msa0480390:CDS 35.0%
!!! GTCTTCTCTTATTTTCCATG+TGG + chr3_3:85661610-85661629 Msa0480390:intron 35.0%
!! ATCATAACTTGCTTATCGTG+GGG - chr3_3:85661706-85661725 None:intergenic 35.0%
!! CATCATAACTTGCTTATCGT+GGG - chr3_3:85661707-85661726 None:intergenic 35.0%
!! ACATCATAACTTGCTTATCG+TGG - chr3_3:85661708-85661727 None:intergenic 35.0%
!!! TAAATTTTTTGCAGACTGGG+CGG - chr3_3:85661756-85661775 None:intergenic 35.0%
! ATATTTGCTAGTGTTGGGTA+TGG + chr3_3:85662088-85662107 Msa0480390:intron 35.0%
! TATTTGCTAGTGTTGGGTAT+GGG + chr3_3:85662089-85662108 Msa0480390:intron 35.0%
!!! CACTTTTTCTTTGAAGAGGA+GGG + chr3_3:85662133-85662152 Msa0480390:intron 35.0%
!! ACTTTTTCTTTGAAGAGGAG+GGG + chr3_3:85662134-85662153 Msa0480390:intron 35.0%
!!! TTGGTTGGGTTGAGATATTT+TGG + chr3_3:85662171-85662190 Msa0480390:intron 35.0%
!!! TGGTTGGGTTGAGATATTTT+GGG + chr3_3:85662172-85662191 Msa0480390:intron 35.0%
GTGACAAAAAAGTTTCTGCA+AGG + chr3_3:85662251-85662270 Msa0480390:intron 35.0%
ATCCATCATTCATTTCGTTG+TGG + chr3_3:85662316-85662335 Msa0480390:intron 35.0%
ATCCACAACGAAATGAATGA+TGG - chr3_3:85662321-85662340 None:intergenic 35.0%
! AATTTGTTCCTTTCAGCCTA+TGG + chr3_3:85662382-85662401 Msa0480390:intron 35.0%
AATTTGATGTAGTGCTGTCA+CGG - chr3_3:85662552-85662571 None:intergenic 35.0%
GCACTACATCAAATTGAAAG+AGG + chr3_3:85662557-85662576 Msa0480390:intron 35.0%
CAAGAAGATCATTCAACTTG+CGG - chr3_3:85662593-85662612 None:intergenic 35.0%
AACAACTTGGTTGAAGTCTA+GGG - chr3_3:85662619-85662638 None:intergenic 35.0%
TAACAACTTGGTTGAAGTCT+AGG - chr3_3:85662620-85662639 None:intergenic 35.0%
!! ACATTTTTGGGGATTTTGTG+TGG + chr3_3:85662842-85662861 Msa0480390:intron 35.0%
! GTAAATTCTACACCTCCTTT+TGG - chr3_3:85662921-85662940 None:intergenic 35.0%
TAAATCTCTTAGGGTGTGTT+TGG - chr3_3:85663259-85663278 None:intergenic 35.0%
ATGACATTACTGAGGAATGA+TGG + chr3_3:85663291-85663310 Msa0480390:intron 35.0%
TATTGACAATTCTGTTGCAG+TGG + chr3_3:85663457-85663476 Msa0480390:intron 35.0%
ATTGACAATTCTGTTGCAGT+GGG + chr3_3:85663458-85663477 Msa0480390:intron 35.0%
GATTCTTGTAGCTACAGATT+TGG + chr3_3:85663645-85663664 Msa0480390:CDS 35.0%
AAATGTAATTGCAAGGCCTT+TGG - chr3_3:85663882-85663901 None:intergenic 35.0%
ATTTGTTTGTAGGACGGAAT+TGG + chr3_3:85664115-85664134 Msa0480390:intron 35.0%
! GAGACACTCAACCAAATTTT+AGG - chr3_3:85664318-85664337 None:intergenic 35.0%
CAAAGCAATATCCACTATGA+TGG - chr3_3:85664770-85664789 None:intergenic 35.0%
!! CATCATAGTGGATATTGCTT+TGG + chr3_3:85664768-85664787 Msa0480390:exon 35.0%
!! TCATAGTGGATATTGCTTTG+GGG + chr3_3:85664770-85664789 Msa0480390:exon 35.0%
GAATGTTTAACACCGATCAA+CGG - chr3_3:85664917-85664936 None:intergenic 35.0%
GTTGAAACAGAATATCGTAC+CGG + chr3_3:85665060-85665079 Msa0480390:three_prime_UTR 35.0%
AAAGACATGAGCAACAAAAC+CGG - chr3_3:85665082-85665101 None:intergenic 35.0%
!! TTTCAGATTGATTTTGCAGG+TGG + chr3_3:85665237-85665256 Msa0480390:three_prime_UTR 35.0%
GAAAGGAAGGTTGTGAATTG+AGG - chr3_3:85659369-85659388 None:intergenic 40.0%
CTGCGAAATGAAAGAGTGAA+AGG - chr3_3:85659386-85659405 None:intergenic 40.0%
CTTTCACTCTTTCATTTCGC+AGG + chr3_3:85659384-85659403 Msa0480390:intron 40.0%
CACCATCTATTGCCAGATAA+TGG + chr3_3:85659519-85659538 Msa0480390:intron 40.0%
TCCCATTATCTGGCAATAGA+TGG - chr3_3:85659524-85659543 None:intergenic 40.0%
! TTTTATGGTAGGGGCTATGT+TGG + chr3_3:85659762-85659781 Msa0480390:intron 40.0%
TTCTCAAACCAGAGCTTCTT+CGG + chr3_3:85659814-85659833 Msa0480390:CDS 40.0%
GGATTTGAACATCCTTCTGA+AGG + chr3_3:85659852-85659871 Msa0480390:intron 40.0%
TAGTCCATCCACTATATGTG+AGG - chr3_3:85660283-85660302 None:intergenic 40.0%
!! ACATATAGTGGATGGACTAC+AGG + chr3_3:85660284-85660303 Msa0480390:intron 40.0%
TCAGATAAGCCAATCCAAAC+AGG + chr3_3:85660565-85660584 Msa0480390:intron 40.0%
ACTTAATCATAGGGCCTGTT+TGG - chr3_3:85660582-85660601 None:intergenic 40.0%
TCTGGAGAACTAACATGCTT+TGG + chr3_3:85660962-85660981 Msa0480390:intron 40.0%
!! TTACTTACCGTTGGTTCCTT+CGG + chr3_3:85661023-85661042 Msa0480390:intron 40.0%
GACAAATTACATCCATTCCG+AGG - chr3_3:85661103-85661122 None:intergenic 40.0%
ACAGAACAAGTGCAGAAACT+TGG - chr3_3:85661199-85661218 None:intergenic 40.0%
AGATATGCCATGAGTTTGAG+AGG + chr3_3:85661331-85661350 Msa0480390:intron 40.0%
AAAGACAGCAACCTTCAGAT+CGG - chr3_3:85661373-85661392 None:intergenic 40.0%
! CTGAAGGTTGCTGTCTTTTA+TGG + chr3_3:85661375-85661394 Msa0480390:CDS 40.0%
! AAGGTTGCTGTCTTTTATGG+TGG + chr3_3:85661378-85661397 Msa0480390:CDS 40.0%
! AGGTTGCTGTCTTTTATGGT+GGG + chr3_3:85661379-85661398 Msa0480390:CDS 40.0%
GCGTTCCAACAACAATTTGA+GGG - chr3_3:85661446-85661465 None:intergenic 40.0%
!! GAAGAATACTAGCATTGGCT+AGG + chr3_3:85661469-85661488 Msa0480390:CDS 40.0%
GGAAAATAAGAGAAGACCAG+TGG - chr3_3:85661607-85661626 None:intergenic 40.0%
CTAAAAACCTCAGGGAATGT+GGG - chr3_3:85661838-85661857 None:intergenic 40.0%
ACTAAAAACCTCAGGGAATG+TGG - chr3_3:85661839-85661858 None:intergenic 40.0%
ATTGGAGTAGAAGATGTGGA+TGG + chr3_3:85661981-85662000 Msa0480390:intron 40.0%
TTGGAGTAGAAGATGTGGAT+GGG + chr3_3:85661982-85662001 Msa0480390:intron 40.0%
TTTAGTAATGCTCCTGACTG+TGG + chr3_3:85662008-85662027 Msa0480390:intron 40.0%
TTAGTAATGCTCCTGACTGT+GGG + chr3_3:85662009-85662028 Msa0480390:intron 40.0%
!!! GGTGCACTTTTTCTTTGAAG+AGG + chr3_3:85662129-85662148 Msa0480390:intron 40.0%
!!! GCACTTTTTCTTTGAAGAGG+AGG + chr3_3:85662132-85662151 Msa0480390:intron 40.0%
TGCACCCAAAGAAAAATGAC+AGG - chr3_3:85662204-85662223 None:intergenic 40.0%
! TTGTGGATTCCATTAGCTTG+AGG + chr3_3:85662333-85662352 Msa0480390:intron 40.0%
CCAGAGTGAATGCATATAGA+TGG - chr3_3:85662705-85662724 None:intergenic 40.0%
CCATCTATATGCATTCACTC+TGG + chr3_3:85662702-85662721 Msa0480390:CDS 40.0%
AAAATGATTCCCAGCATCTG+CGG - chr3_3:85662764-85662783 None:intergenic 40.0%
! CTCACAATAATGGTGCCAAA+AGG + chr3_3:85662903-85662922 Msa0480390:intron 40.0%
! ACAATAATGGTGCCAAAAGG+AGG + chr3_3:85662906-85662925 Msa0480390:intron 40.0%
TCTGAAAACGCTTAGACAAG+AGG - chr3_3:85662943-85662962 None:intergenic 40.0%
! ATAAGGGTGTGTTTGGATTG+AGG + chr3_3:85663021-85663040 Msa0480390:intron 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG + chr3_3:85663022-85663041 Msa0480390:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr3_3:85663028-85663047 Msa0480390:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr3_3:85663032-85663051 Msa0480390:intron 40.0%
TTTGGATTGAGGGTTTGGAA+GGG - chr3_3:85663241-85663260 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr3_3:85663251-85663270 None:intergenic 40.0%
! CATTACTGAGGAATGATGGA+TGG + chr3_3:85663295-85663314 Msa0480390:intron 40.0%
TTGAATGACAAAGGAGGTTC+AGG + chr3_3:85663396-85663415 Msa0480390:intron 40.0%
! TGTAGGTTGAAGCGTTATAG+AGG + chr3_3:85663601-85663620 Msa0480390:intron 40.0%
! GAAGCGTTATAGAGGTTTCA+AGG + chr3_3:85663609-85663628 Msa0480390:CDS 40.0%
CGTTATAGAGGTTTCAAGGA+GGG + chr3_3:85663613-85663632 Msa0480390:CDS 40.0%
GTTATAGAGGTTTCAAGGAG+GGG + chr3_3:85663614-85663633 Msa0480390:CDS 40.0%
! CTTGTAGCTACAGATTTGGT+TGG + chr3_3:85663649-85663668 Msa0480390:CDS 40.0%
!! CTACAGATTTGGTTGGTAGA+GGG + chr3_3:85663656-85663675 Msa0480390:CDS 40.0%
AAGTAAGTGTCTGCAGAATC+AGG - chr3_3:85663724-85663743 None:intergenic 40.0%
! TTAGGGTAGTCTGACTCTTT+TGG + chr3_3:85663816-85663835 Msa0480390:intron 40.0%
!! CTTTTGGAGGGATACTTTAC+AGG + chr3_3:85663832-85663851 Msa0480390:intron 40.0%
! AAAGTGCTTACTGTAGGTAG+AGG - chr3_3:85664066-85664085 None:intergenic 40.0%
AATTATGCAACTTGGTCCCT+CGG - chr3_3:85664661-85664680 None:intergenic 40.0%
!!! GATTTGTGGCGGAGATTTTT+TGG + chr3_3:85664837-85664856 Msa0480390:three_prime_UTR 40.0%
!!! TGGCGGAGATTTTTTGGAAA+AGG + chr3_3:85664843-85664862 Msa0480390:three_prime_UTR 40.0%
!!! GGCGGAGATTTTTTGGAAAA+GGG + chr3_3:85664844-85664863 Msa0480390:three_prime_UTR 40.0%
TGATTTGACCATGCTGATGT+CGG + chr3_3:85664876-85664895 Msa0480390:three_prime_UTR 40.0%
!!! TAGGCTACTTTTCCGTTGAT+CGG + chr3_3:85664902-85664921 Msa0480390:three_prime_UTR 40.0%
!!! GGTTTTGTTGCTCATGTCTT+TGG + chr3_3:85665081-85665100 Msa0480390:three_prime_UTR 40.0%
TAACGATGAGCTAAAGGAAC+TGG - chr3_3:85665289-85665308 None:intergenic 40.0%
! TCCTTTAGCTCATCGTTACA+CGG + chr3_3:85665291-85665310 Msa0480390:three_prime_UTR 40.0%
!! CCTTTGGTTCTCCCATTATC+TGG - chr3_3:85659534-85659553 None:intergenic 45.0%
!! CCAGATAATGGGAGAACCAA+AGG + chr3_3:85659531-85659550 Msa0480390:intron 45.0%
ACCAAAGGACGAAACTTACG+AGG + chr3_3:85659546-85659565 Msa0480390:CDS 45.0%
TCCTCGTAAGTTTCGTCCTT+TGG - chr3_3:85659550-85659569 None:intergenic 45.0%
! ACTTTAGCTCCGTTGGTATC+GGG - chr3_3:85659610-85659629 None:intergenic 45.0%
! GACTTTAGCTCCGTTGGTAT+CGG - chr3_3:85659611-85659630 None:intergenic 45.0%
ACCAACGGAGCTAAAGTCAA+CGG + chr3_3:85659613-85659632 Msa0480390:CDS 45.0%
TCTCAAACCAGAGCTTCTTC+GGG + chr3_3:85659815-85659834 Msa0480390:CDS 45.0%
AAAGAATAGGGTAGCAGTGG+AGG + chr3_3:85660194-85660213 Msa0480390:intron 45.0%
AAGAATAGGGTAGCAGTGGA+GGG + chr3_3:85660195-85660214 Msa0480390:intron 45.0%
! AGCACCTCACATATAGTGGA+TGG + chr3_3:85660276-85660295 Msa0480390:intron 45.0%
ATCATAGGGCCTGTTTGGAT+TGG - chr3_3:85660577-85660596 None:intergenic 45.0%
AGAAAGGGAGTAAGGGGAAA+GGG - chr3_3:85660742-85660761 None:intergenic 45.0%
!! TACTTACCGTTGGTTCCTTC+GGG + chr3_3:85661024-85661043 Msa0480390:intron 45.0%
AGCAAAGAAAAAAGGCCCGA+AGG - chr3_3:85661042-85661061 None:intergenic 45.0%
TGCATACCTCAAGCAATCCT+CGG + chr3_3:85661083-85661102 Msa0480390:CDS 45.0%
AGTCGAGAGAACAAAGACAG+CGG - chr3_3:85661150-85661169 None:intergenic 45.0%
! CACAAGAGAACTAGCTTACC+AGG + chr3_3:85661223-85661242 Msa0480390:CDS 45.0%
CCAATGCCCCAATAAATACC+TGG - chr3_3:85661244-85661263 None:intergenic 45.0%
CCAGGTATTTATTGGGGCAT+TGG + chr3_3:85661241-85661260 Msa0480390:intron 45.0%
TACCTACTTACCCGATCTGA+AGG + chr3_3:85661359-85661378 Msa0480390:CDS 45.0%
AACCTTCAGATCGGGTAAGT+AGG - chr3_3:85661364-85661383 None:intergenic 45.0%
AAGACAGCAACCTTCAGATC+GGG - chr3_3:85661372-85661391 None:intergenic 45.0%
! GGTTGCTGTCTTTTATGGTG+GGG + chr3_3:85661380-85661399 Msa0480390:CDS 45.0%
GAGTGCCCTCAAATTGTTGT+TGG + chr3_3:85661438-85661457 Msa0480390:CDS 45.0%
GGCGTTCCAACAACAATTTG+AGG - chr3_3:85661447-85661466 None:intergenic 45.0%
! CAAATTGTTGTTGGAACGCC+TGG + chr3_3:85661447-85661466 Msa0480390:CDS 45.0%
GCCTGGAAGAATACTAGCAT+TGG + chr3_3:85661464-85661483 Msa0480390:CDS 45.0%
GCCAATGCTAGTATTCTTCC+AGG - chr3_3:85661468-85661487 None:intergenic 45.0%
! GTTTTCAGCAACACTCAGCA+AGG + chr3_3:85661726-85661745 Msa0480390:CDS 45.0%
TTAACAACCTGCTGGTGAGT+TGG + chr3_3:85661941-85661960 Msa0480390:intron 45.0%
! CTGGATTGGAGTAGAAGATG+TGG + chr3_3:85661977-85661996 Msa0480390:intron 45.0%
TAGTAATGCTCCTGACTGTG+GGG + chr3_3:85662010-85662029 Msa0480390:intron 45.0%
AAGTACATAACCCCACAGTC+AGG - chr3_3:85662023-85662042 None:intergenic 45.0%
CCAGCATGAACAACAAGAGA+CGG - chr3_3:85662050-85662069 None:intergenic 45.0%
!! CGTCTCTTGTTGTTCATGCT+GGG + chr3_3:85662048-85662067 Msa0480390:intron 45.0%
AAACACGTGGACAAGAACTG+TGG + chr3_3:85662279-85662298 Msa0480390:intron 45.0%
TGGACAAGAACTGTGGTTCA+AGG + chr3_3:85662286-85662305 Msa0480390:intron 45.0%
GGACAAGAACTGTGGTTCAA+GGG + chr3_3:85662287-85662306 Msa0480390:intron 45.0%
! GGATTCCATTAGCTTGAGGA+CGG + chr3_3:85662337-85662356 Msa0480390:intron 45.0%
GAAGCCAAGTTAACCCTTCA+TGG + chr3_3:85662422-85662441 Msa0480390:CDS 45.0%
CAGTCCATGAAGGGTTAACT+TGG - chr3_3:85662429-85662448 None:intergenic 45.0%
CAAGTTAACCCTTCATGGAC+TGG + chr3_3:85662427-85662446 Msa0480390:CDS 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr3_3:85663031-85663050 Msa0480390:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr3_3:85663033-85663052 Msa0480390:intron 45.0%
TTGGATTGAGGGTTTGGAAG+GGG - chr3_3:85663240-85663259 None:intergenic 45.0%
GTTTGGATTGAGGGTTTGGA+AGG - chr3_3:85663242-85663261 None:intergenic 45.0%
GTGTGTTTGGATTGAGGGTT+TGG - chr3_3:85663027-85663046 None:intergenic 45.0%
CTTAGGGTGTGTTTGGATTG+AGG - chr3_3:85663252-85663271 None:intergenic 45.0%
GGAGGTTCAGGAAACAAATG+CGG + chr3_3:85663408-85663427 Msa0480390:intron 45.0%
GCGTTATAGAGGTTTCAAGG+AGG + chr3_3:85663612-85663631 Msa0480390:CDS 45.0%
!! GCTACAGATTTGGTTGGTAG+AGG + chr3_3:85663655-85663674 Msa0480390:CDS 45.0%
TGCAGACACTTACTTGCACA+GGG + chr3_3:85663729-85663748 Msa0480390:CDS 45.0%
! GGTAGTCTGACTCTTTTGGA+GGG + chr3_3:85663820-85663839 Msa0480390:intron 45.0%
TGGAGGGATACTTTACAGGT+TGG + chr3_3:85663836-85663855 Msa0480390:intron 45.0%
TGGTTCCAAATCTTCCAGCT+CGG - chr3_3:85663862-85663881 None:intergenic 45.0%
! GCTGGAAGATTTGGAACCAA+AGG + chr3_3:85663863-85663882 Msa0480390:CDS 45.0%
! GTGATTTGCAGGTTCAGTCA+AGG + chr3_3:85664000-85664019 Msa0480390:intron 45.0%
!! GTAGAGGTATCAATCTGCTC+AGG - chr3_3:85664050-85664069 None:intergenic 45.0%
GAGGGACCAAGTTGCATAAT+TGG + chr3_3:85664660-85664679 Msa0480390:intron 45.0%
!! TATTGCTTTGGGGCAACACT+TGG + chr3_3:85664780-85664799 Msa0480390:three_prime_UTR 45.0%
GTATGAGTACCCTCATCTAC+TGG + chr3_3:85664815-85664834 Msa0480390:three_prime_UTR 45.0%
ACCCTCATCTACTGGATTTG+TGG + chr3_3:85664823-85664842 Msa0480390:three_prime_UTR 45.0%
GCCACAAATCCAGTAGATGA+GGG - chr3_3:85664827-85664846 None:intergenic 45.0%
CTCATCTACTGGATTTGTGG+CGG + chr3_3:85664826-85664845 Msa0480390:three_prime_UTR 45.0%
GATTTGACCATGCTGATGTC+GGG + chr3_3:85664877-85664896 Msa0480390:three_prime_UTR 45.0%
GATCAACGGAAAAGTAGCCT+AGG - chr3_3:85664903-85664922 None:intergenic 45.0%
ACTGGTAGCATAGACATGGA+AGG - chr3_3:85665271-85665290 None:intergenic 45.0%
AGGAACTGGTAGCATAGACA+TGG - chr3_3:85665275-85665294 None:intergenic 45.0%
TCCGTGTAACGATGAGCTAA+AGG - chr3_3:85665295-85665314 None:intergenic 45.0%
!! AATATATATATAAATAAAGA+TGG - chr3_3:85659886-85659905 None:intergenic 5.0%
AGTTCACTCACTTCACCCAC+CGG + chr3_3:85659246-85659265 Msa0480390:intron 50.0%
TGATACGATACGATGCCGGT+GGG - chr3_3:85659264-85659283 None:intergenic 50.0%
ATGATACGATACGATGCCGG+TGG - chr3_3:85659265-85659284 None:intergenic 50.0%
GCGATGATACGATACGATGC+CGG - chr3_3:85659268-85659287 None:intergenic 50.0%
GGCATCGTATCGTATCATCG+CGG + chr3_3:85659267-85659286 Msa0480390:intron 50.0%
ATCGTATCGTATCATCGCGG+AGG + chr3_3:85659270-85659289 Msa0480390:intron 50.0%
TAGGGTTTCGAGAGACTGCA+AGG - chr3_3:85659337-85659356 None:intergenic 50.0%
GGAAGAGCTTCTCGATTACG+AGG + chr3_3:85659567-85659586 Msa0480390:CDS 50.0%
AGAGCTTCTCGATTACGAGG+AGG + chr3_3:85659570-85659589 Msa0480390:CDS 50.0%
GACAAAGCTCCCGATACCAA+CGG + chr3_3:85659598-85659617 Msa0480390:CDS 50.0%
!! ACCGTTGACTTTAGCTCCGT+TGG - chr3_3:85659617-85659636 None:intergenic 50.0%
TAAGGGGAAAGGGAGCGAAA+AGG - chr3_3:85660732-85660751 None:intergenic 50.0%
GAGAAAGGGAGTAAGGGGAA+AGG - chr3_3:85660743-85660762 None:intergenic 50.0%
AAAAGGCCCGAAGGAACCAA+CGG - chr3_3:85661033-85661052 None:intergenic 50.0%
ACCTCAAGCAATCCTCGGAA+TGG + chr3_3:85661088-85661107 Msa0480390:CDS 50.0%
TCCATTCCGAGGATTGCTTG+AGG - chr3_3:85661092-85661111 None:intergenic 50.0%
CAGCAGATTGATCCTGTTCC+AGG + chr3_3:85661173-85661192 Msa0480390:CDS 50.0%
ACAAGTGCAGAAACTTGGCC+TGG - chr3_3:85661194-85661213 None:intergenic 50.0%
CATACTTCCCACATTCCCTG+AGG + chr3_3:85661828-85661847 Msa0480390:intron 50.0%
!! CCGTCTCTTGTTGTTCATGC+TGG + chr3_3:85662047-85662066 Msa0480390:intron 50.0%
GTGCAAGTATCCAATGTCCG+TGG + chr3_3:85662219-85662238 Msa0480390:intron 50.0%
TTTGTCACCGACAAGTGCCA+CGG - chr3_3:85662239-85662258 None:intergenic 50.0%
CTGCAAGGAGACAAAACACG+TGG + chr3_3:85662266-85662285 Msa0480390:intron 50.0%
TACCTGCACCAGTCCATGAA+GGG - chr3_3:85662438-85662457 None:intergenic 50.0%
TCACGGCAGACAAGAAGGTA+AGG - chr3_3:85662535-85662554 None:intergenic 50.0%
TGTTAGTAGAGCAGCTGAGC+TGG + chr3_3:85662653-85662672 Msa0480390:CDS 50.0%
CTGGCATGTCCCAAGAAGAA+AGG + chr3_3:85662721-85662740 Msa0480390:CDS 50.0%
TATGAGATGTCCGCAGATGC+TGG + chr3_3:85662751-85662770 Msa0480390:intron 50.0%
ATGAGATGTCCGCAGATGCT+GGG + chr3_3:85662752-85662771 Msa0480390:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG + chr3_3:85663037-85663056 Msa0480390:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG + chr3_3:85663038-85663057 Msa0480390:intron 50.0%
TTGAGGGTTTGGAAGGGGAA+GGG - chr3_3:85663235-85663254 None:intergenic 50.0%
ATTGAGGGTTTGGAAGGGGA+AGG - chr3_3:85663236-85663255 None:intergenic 50.0%
CAGGAAACAAATGCGGCTGT+TGG + chr3_3:85663415-85663434 Msa0480390:intron 50.0%
! GTTTCAAGGAGGGGCATACT+AGG + chr3_3:85663623-85663642 Msa0480390:CDS 50.0%
CTGCAGACACTTACTTGCAC+AGG + chr3_3:85663728-85663747 Msa0480390:CDS 50.0%
! GGGTAGTCTGACTCTTTTGG+AGG + chr3_3:85663819-85663838 Msa0480390:intron 50.0%
ACGAGAAAATCTGACCCGTG+AGG + chr3_3:85664626-85664645 Msa0480390:intron 50.0%
CTCGGATATTCTTGCCTCAC+GGG - chr3_3:85664643-85664662 None:intergenic 50.0%
CCTCGGATATTCTTGCCTCA+CGG - chr3_3:85664644-85664663 None:intergenic 50.0%
CGTGAGGCAAGAATATCCGA+GGG + chr3_3:85664642-85664661 Msa0480390:intron 50.0%
CACTATGATGGCACTGCACA+TGG - chr3_3:85664758-85664777 None:intergenic 50.0%
CATGTGCAGTGCCATCATAG+TGG + chr3_3:85664756-85664775 Msa0480390:intron 50.0%
CAACACTTGGTCCGTTTGGA+CGG + chr3_3:85664793-85664812 Msa0480390:three_prime_UTR 50.0%
GGGTACTCATACCGTCCAAA+CGG - chr3_3:85664807-85664826 None:intergenic 50.0%
CGCCACAAATCCAGTAGATG+AGG - chr3_3:85664828-85664847 None:intergenic 50.0%
CGGTGATGCTGTTGTTGAAC+TGG + chr3_3:85665011-85665030 Msa0480390:three_prime_UTR 50.0%
ACGATAGCCCGAAGAAGCTC+TGG - chr3_3:85659825-85659844 None:intergenic 55.0%
!! CTTCGGGCTATCGTCGATTC+CGG + chr3_3:85659831-85659850 Msa0480390:intron 55.0%
!! GGATGGACTACAGGCCTGTT+TGG + chr3_3:85660293-85660312 Msa0480390:intron 55.0%
GCAGAAACTTGGCCTGGAAC+AGG - chr3_3:85661188-85661207 None:intergenic 55.0%
! AACCTGCTGGTGAGTTGGAG+TGG + chr3_3:85661946-85661965 Msa0480390:intron 55.0%
! ACCTGCTGGTGAGTTGGAGT+GGG + chr3_3:85661947-85661966 Msa0480390:intron 55.0%
! TTGAAGAGGAGGGGTGTGTG+TGG + chr3_3:85662143-85662162 Msa0480390:intron 55.0%
! TGAAGAGGAGGGGTGTGTGT+GGG + chr3_3:85662144-85662163 Msa0480390:intron 55.0%
!! TGTGTGTGGGTGGGTTGGTT+GGG + chr3_3:85662157-85662176 Msa0480390:intron 55.0%
CCAATGTCCGTGGCACTTGT+CGG + chr3_3:85662229-85662248 Msa0480390:intron 55.0%
AGGGTCCGTCCTCAAGCTAA+TGG - chr3_3:85662345-85662364 None:intergenic 55.0%
!! AACCCTTCATGGACTGGTGC+AGG + chr3_3:85662433-85662452 Msa0480390:CDS 55.0%
CTACCTGCACCAGTCCATGA+AGG - chr3_3:85662439-85662458 None:intergenic 55.0%
!! CTTCATGGACTGGTGCAGGT+AGG + chr3_3:85662437-85662456 Msa0480390:intron 55.0%
TGCTGTCACGGCAGACAAGA+AGG - chr3_3:85662540-85662559 None:intergenic 55.0%
! ACTTTACAGGTTGGCCGAGC+TGG + chr3_3:85663845-85663864 Msa0480390:intron 55.0%
GTTGGCCGAGCTGGAAGATT+TGG + chr3_3:85663854-85663873 Msa0480390:CDS 55.0%
CCGTGAGGCAAGAATATCCG+AGG + chr3_3:85664641-85664660 Msa0480390:intron 55.0%
! CCTGCTGGTGAGTTGGAGTG+GGG + chr3_3:85661948-85661967 Msa0480390:intron 60.0%
! CTGGTGAGTTGGAGTGGGGT+TGG + chr3_3:85661952-85661971 Msa0480390:intron 60.0%
! AGTTGGAGTGGGGTTGGCAC+TGG + chr3_3:85661958-85661977 Msa0480390:intron 60.0%
! GAGTGGGGTTGGCACTGGAT+TGG + chr3_3:85661963-85661982 Msa0480390:intron 60.0%
!! GTGTGTGTGGGTGGGTTGGT+TGG + chr3_3:85662156-85662175 Msa0480390:intron 60.0%
CCGACAAGTGCCACGGACAT+TGG - chr3_3:85662232-85662251 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr3_3:85663041-85663060 Msa0480390:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr3_3:85663042-85663061 Msa0480390:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr3_3:85663043-85663062 Msa0480390:intron 60.0%
GGTTTGGAAGGGGAAGGGAG+GGG - chr3_3:85663230-85663249 None:intergenic 60.0%
GGGTTTGGAAGGGGAAGGGA+GGG - chr3_3:85663231-85663250 None:intergenic 60.0%
AGGGTTTGGAAGGGGAAGGG+AGG - chr3_3:85663232-85663251 None:intergenic 60.0%
GGGGCAACACTTGGTCCGTT+TGG + chr3_3:85664789-85664808 Msa0480390:three_prime_UTR 60.0%
ACCATGCTGATGTCGGGCCT+AGG + chr3_3:85664883-85664902 Msa0480390:three_prime_UTR 60.0%
CCCCACTCCAACTCACCAGC+AGG - chr3_3:85661951-85661970 None:intergenic 65.0%
! AGAGGAGGGGTGTGTGTGGG+TGG + chr3_3:85662147-85662166 Msa0480390:intron 65.0%
! GAGGAGGGGTGTGTGTGGGT+GGG + chr3_3:85662148-85662167 Msa0480390:intron 65.0%
! AGGGGTGTGTGTGGGTGGGT+TGG + chr3_3:85662152-85662171 Msa0480390:intron 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr3_3:85663046-85663065 Msa0480390:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr3_3:85663047-85663066 Msa0480390:intron 65.0%
TGGAAGGGGAAGGGAGGGGA+GGG - chr3_3:85663226-85663245 None:intergenic 65.0%
TTGGAAGGGGAAGGGAGGGG+AGG - chr3_3:85663227-85663246 None:intergenic 65.0%
GCCTAGGCCCGACATCAGCA+TGG - chr3_3:85664887-85664906 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 85659172 85665345 85659172 ID=Msa0480390;Name=Msa0480390
chr3_3 mRNA 85659172 85665345 85659172 ID=Msa0480390-mRNA-1;Parent=Msa0480390;Name=Msa0480390-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.81|0.75|0.91|0.72|0.66|12|570|416
chr3_3 exon 85659172 85659177 85659172 ID=Msa0480390-mRNA-1:exon:24666;Parent=Msa0480390-mRNA-1
chr3_3 exon 85659535 85659650 85659535 ID=Msa0480390-mRNA-1:exon:24667;Parent=Msa0480390-mRNA-1
chr3_3 exon 85659773 85659842 85659773 ID=Msa0480390-mRNA-1:exon:24668;Parent=Msa0480390-mRNA-1
chr3_3 exon 85661083 85661244 85661083 ID=Msa0480390-mRNA-1:exon:24669;Parent=Msa0480390-mRNA-1
chr3_3 exon 85661333 85661564 85661333 ID=Msa0480390-mRNA-1:exon:24670;Parent=Msa0480390-mRNA-1
chr3_3 exon 85661665 85661783 85661665 ID=Msa0480390-mRNA-1:exon:24671;Parent=Msa0480390-mRNA-1
chr3_3 exon 85662398 85662454 85662398 ID=Msa0480390-mRNA-1:exon:24672;Parent=Msa0480390-mRNA-1
chr3_3 exon 85662558 85662742 85662558 ID=Msa0480390-mRNA-1:exon:24673;Parent=Msa0480390-mRNA-1
chr3_3 exon 85663606 85663750 85663606 ID=Msa0480390-mRNA-1:exon:24674;Parent=Msa0480390-mRNA-1
chr3_3 exon 85663854 85663937 85663854 ID=Msa0480390-mRNA-1:exon:24675;Parent=Msa0480390-mRNA-1
chr3_3 exon 85664011 85664074 85664011 ID=Msa0480390-mRNA-1:exon:24676;Parent=Msa0480390-mRNA-1
chr3_3 exon 85664765 85665345 85664765 ID=Msa0480390-mRNA-1:exon:24677;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85659172 85659177 85659172 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85659535 85659650 85659535 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85659773 85659842 85659773 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85661083 85661244 85661083 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85661333 85661564 85661333 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85661665 85661783 85661665 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85662398 85662454 85662398 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85662558 85662742 85662558 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85663606 85663750 85663606 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85663854 85663937 85663854 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85664011 85664074 85664011 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 CDS 85664765 85664775 85664765 ID=Msa0480390-mRNA-1:cds;Parent=Msa0480390-mRNA-1
chr3_3 three_prime_UTR 85664776 85665345 85664776 ID=Msa0480390-mRNA-1:three_prime_utr;Parent=Msa0480390-mRNA-1
Gene Sequence

>Msa0480390

ATGGCGATAATGGGAGAACCAAAGGACGAAACTTACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGAAGACAAAGCTCCCGATACCAACGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTCAAACCAGAGCTTCTTCGGGCTATCTGCATACCTCAAGCAATCCTCGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAGACCGCTGTCTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGTCACACAAGAGAACTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTTAGTACCTACTTACCCGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAATATCAAAGTTCACAAGGATCTATTGAAAAATGAGTGCCCTCAAATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCTAGGGAGAAGAATCTTTCATTGAAGAATGTTCGTCATTTCGTTTTAGATGAGTGTGATAAGATGCTTGAATCACTGGACATGAGGAAAGACGTTCAAGACATTTTCAAGTTGACTCCCCACGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAGTCTGCAAAAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAAGCCAAGTTAACCCTTCATGGACTGGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAAAACCGCAAGTTGAATGATCTTCTTGATGCCCTAGACTTCAACCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAGACTACTTATAGAGTGCAATTTTCCATCTATATGCATTCACTCTGGCATGTCCCAAGAAGAAAGGTTGAAGCGTTATAGAGGTTTCAAGGAGGGGCATACTAGGATTCTTGTAGCTACAGATTTGGTTGGTAGAGGGATTGACATTGAACGTGTCAATATTGTTATAAACTATGACATGCCTGATTCTGCAGACACTTACTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGAACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCTTCTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTCGAAATAGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCATCATAG
Protein sequence

>Msa0480390

MAIMGEPKDETYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAICIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALAREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEIDIKQLPEQIDTSTYMPS*