AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524910 MtrunA17_Chr4g0003441 86.682 428 40 3 4 416 63 488 0.0 729
Msa0524910 MtrunA17_Chr1g0149251 96.512 344 12 0 73 416 1 344 0.0 694
Msa0524910 MtrunA17_Chr3g0137901 99.444 180 1 0 237 416 1 180 3.44e-129 369
Msa0524910 MtrunA17_Chr3g0137891 100.000 163 0 0 73 235 1 163 4.42e-117 340
Msa0524910 MtrunA17_Chr2g0299681 39.452 365 211 7 45 408 54 409 2.14e-74 238
Msa0524910 MtrunA17_Chr2g0329931 39.452 365 211 7 45 408 54 409 8.16e-74 236
Msa0524910 MtrunA17_Chr4g0070981 38.904 365 213 7 45 408 54 409 2.08e-72 233
Msa0524910 MtrunA17_Chr7g0247191 36.388 371 224 7 44 413 162 521 1.22e-71 234
Msa0524910 MtrunA17_Chr7g0247221 34.442 421 248 8 8 413 107 514 3.28e-71 233
Msa0524910 MtrunA17_Chr7g0247181 36.388 371 224 7 44 413 152 511 3.85e-71 232
Msa0524910 MtrunA17_Chr8g0342861 38.356 365 215 7 45 408 54 409 5.65e-71 229
Msa0524910 MtrunA17_Chr2g0297261 35.792 366 223 8 45 408 47 402 7.79e-68 221
Msa0524910 MtrunA17_Chr3g0107851 34.104 346 208 7 50 380 132 472 3.29e-58 199
Msa0524910 MtrunA17_Chr2g0330401 31.978 369 229 8 34 385 85 448 3.06e-54 187
Msa0524910 MtrunA17_Chr7g0236841 34.268 321 204 6 65 382 39 355 6.43e-54 185
Msa0524910 MtrunA17_Chr6g0483491 34.268 321 204 6 65 382 39 355 9.58e-54 184
Msa0524910 MtrunA17_Chr1g0176041 35.714 350 202 7 56 385 174 520 3.01e-53 187
Msa0524910 MtrunA17_Chr3g0121351 36.103 349 193 8 56 380 165 507 5.14e-53 186
Msa0524910 MtrunA17_Chr4g0063551 35.429 350 200 7 56 382 160 506 2.55e-52 185
Msa0524910 MtrunA17_Chr4g0076491 32.979 376 208 8 45 390 300 661 5.60e-52 185
Msa0524910 MtrunA17_Chr7g0271121 34.132 334 201 7 62 384 133 458 1.20e-51 184
Msa0524910 MtrunA17_Chr1g0193491 31.672 341 215 9 62 391 141 474 1.43e-50 180
Msa0524910 MtrunA17_Chr6g0449741 32.713 376 207 9 45 390 262 621 7.41e-50 179
Msa0524910 MtrunA17_Chr2g0310581 32.184 348 223 8 58 398 75 416 1.15e-48 173
Msa0524910 MtrunA17_Chr2g0300291 32.571 350 219 10 57 396 162 504 8.43e-48 174
Msa0524910 MtrunA17_Chr3g0095031 31.358 405 240 13 24 406 73 461 1.86e-47 170
Msa0524910 MtrunA17_Chr3g0098121 32.571 350 218 11 57 396 173 514 1.93e-46 170
Msa0524910 MtrunA17_Chr6g0449911 29.771 393 249 10 34 404 154 541 2.57e-46 169
Msa0524910 MtrunA17_Chr5g0442191 31.830 377 206 14 62 412 108 459 8.17e-46 166
Msa0524910 MtrunA17_Chr2g0293631 32.362 343 214 10 48 382 512 844 9.12e-45 166
Msa0524910 MtrunA17_Chr1g0200181 30.458 371 232 8 34 382 134 500 4.31e-44 162
Msa0524910 MtrunA17_Chr7g0270131 30.448 335 219 8 57 382 253 582 6.65e-43 160
Msa0524910 MtrunA17_Chr7g0263771 32.194 351 220 10 50 395 151 488 1.43e-41 155
Msa0524910 MtrunA17_Chr2g0277821 30.655 336 218 7 57 382 525 855 1.69e-41 157
Msa0524910 MtrunA17_Chr4g0040761 31.322 348 222 12 43 383 30 367 6.77e-41 154
Msa0524910 MtrunA17_Chr1g0157691 29.380 371 236 8 34 382 136 502 9.39e-41 152
Msa0524910 MtrunA17_Chr1g0179761 27.805 410 234 11 48 407 78 475 3.33e-40 149
Msa0524910 MtrunA17_Chr3g0114081 28.696 345 221 5 61 381 41 384 2.20e-39 149
Msa0524910 MtrunA17_Chr5g0409981 30.946 349 204 8 57 382 123 457 4.15e-38 144
Msa0524910 MtrunA17_Chr8g0347161 29.412 357 226 10 45 382 115 464 4.18e-38 145
Msa0524910 MtrunA17_Chr8g0347171 29.692 357 225 10 45 382 173 522 6.13e-38 145
Msa0524910 MtrunA17_Chr8g0342851 30.612 343 206 8 64 405 1 312 3.01e-37 137
Msa0524910 MtrunA17_Chr8g0347151 29.972 357 224 9 45 382 214 563 3.28e-37 143
Msa0524910 MtrunA17_Chr3g0137881 98.387 62 1 0 4 65 1 62 3.02e-36 127
Msa0524910 MtrunA17_Chr7g0236831 27.252 444 241 15 45 415 176 610 1.15e-35 139
Msa0524910 MtrunA17_Chr2g0307471 29.305 331 220 8 61 381 116 442 1.81e-35 137
Msa0524910 MtrunA17_Chr2g0309551 26.434 401 236 6 58 401 131 529 6.31e-35 135
Msa0524910 MtrunA17_Chr6g0461751 30.294 340 212 9 58 382 162 491 7.86e-35 135
Msa0524910 MtrunA17_Chr6g0475251 30.473 338 203 11 61 378 128 453 1.39e-34 135
Msa0524910 MtrunA17_Chr5g0443991 28.150 373 238 12 24 381 70 427 1.92e-34 135
Msa0524910 MtrunA17_Chr8g0386451 30.267 337 213 8 65 382 317 650 3.42e-34 135
Msa0524910 MtrunA17_Chr1g0169331 28.894 398 240 14 47 409 6 395 1.23e-33 129
Msa0524910 MtrunA17_Chr4g0062301 28.701 331 223 9 61 381 122 449 4.29e-33 130
Msa0524910 MtrunA17_Chr4g0058591 26.301 346 226 8 13 341 177 510 7.82e-33 129
Msa0524910 MtrunA17_Chr4g0029191 27.078 421 213 17 58 394 67 477 5.11e-32 128
Msa0524910 MtrunA17_Chr1g0204391 28.653 349 211 10 61 378 69 410 9.16e-32 127
Msa0524910 MtrunA17_Chr2g0301281 26.128 421 217 17 58 394 64 474 9.57e-31 124
Msa0524910 MtrunA17_Chr4g0034411 28.097 331 215 11 65 381 105 426 1.19e-29 121
Msa0524910 MtrunA17_Chr6g0466611 27.195 353 218 12 58 382 164 505 4.54e-29 119
Msa0524910 MtrunA17_Chr5g0429221 27.019 322 224 7 66 382 33 348 1.37e-27 113
Msa0524910 MtrunA17_Chr4g0025141 31.429 210 128 5 213 407 15 223 7.53e-27 107
Msa0524910 MtrunA17_Chr3g0145781 29.006 362 215 10 55 381 151 505 1.48e-26 111
Msa0524910 MtrunA17_Chr1g0192021 24.747 396 229 11 57 395 47 430 3.46e-20 92.8
Msa0524910 MtrunA17_Chr4g0039471 33.714 175 110 4 58 229 245 416 4.14e-20 91.7
Msa0524910 MtrunA17_Chr1g0149261 90.000 40 4 0 25 64 22 61 4.93e-18 78.6
Msa0524910 MtrunA17_Chr4g0062321 29.167 192 132 4 158 346 43 233 2.85e-17 80.9
Msa0524910 MtrunA17_Chr4g0004301 24.934 377 209 12 74 382 71 441 7.83e-17 82.4
Msa0524910 MtrunA17_Chr1g0155201 29.004 231 142 8 156 382 12 224 7.98e-17 81.3
Msa0524910 MtrunA17_Chr5g0434301 24.668 377 210 12 74 382 71 441 3.77e-16 80.1
Msa0524910 MtrunA17_Chr8g0349951 36.434 129 78 4 58 184 32 158 1.12e-14 71.2
Msa0524910 MtrunA17_Chr4g0025101 35.000 100 51 1 312 397 90 189 2.00e-14 72.0
Msa0524910 MtrunA17_Chr4g0025131 28.182 220 125 8 6 197 4 218 4.96e-14 72.0
Msa0524910 MtrunA17_Chr8g0354761 22.455 334 241 7 60 381 32 359 4.09e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524910 AT5G11170.1 87.438 406 36 2 25 416 23 427 0.0 733
Msa0524910 AT5G11200.1 87.438 406 36 2 25 416 23 427 0.0 733
Msa0524910 AT5G11200.3 79.418 447 36 3 25 416 23 468 0.0 712
Msa0524910 AT5G11170.2 90.698 344 32 0 73 416 1 344 0.0 657
Msa0524910 AT5G11200.2 69.462 465 68 6 25 416 23 486 0.0 623
Msa0524910 AT4G00660.1 35.681 426 239 9 9 413 92 503 3.53e-74 240
Msa0524910 AT4G00660.2 35.681 426 239 9 9 413 92 503 3.53e-74 240
Msa0524910 AT2G45810.1 37.027 370 221 7 45 413 168 526 6.44e-74 240
Msa0524910 AT1G72730.1 36.740 411 234 9 2 408 22 410 2.84e-73 235
Msa0524910 AT3G61240.2 35.323 402 231 8 27 413 109 496 7.30e-73 237
Msa0524910 AT3G61240.1 35.323 402 231 8 27 413 109 496 7.30e-73 237
Msa0524910 AT3G13920.1 38.904 365 213 7 45 408 53 408 1.62e-72 233
Msa0524910 AT3G13920.4 38.830 376 214 8 43 408 34 403 2.60e-72 233
Msa0524910 AT3G13920.3 38.904 365 213 7 45 408 43 398 2.61e-72 233
Msa0524910 AT1G54270.1 38.356 365 215 7 45 408 53 408 1.88e-70 228
Msa0524910 AT1G54270.2 38.298 376 216 8 43 408 34 403 6.39e-70 226
Msa0524910 AT3G13920.2 40.413 339 193 6 45 382 53 383 8.17e-70 226
Msa0524910 AT3G13920.5 40.413 339 193 6 45 382 57 387 9.19e-70 226
Msa0524910 AT3G19760.1 35.519 366 224 8 45 408 49 404 5.38e-68 221
Msa0524910 AT1G51380.1 36.066 366 216 10 45 405 36 388 2.66e-65 214
Msa0524910 AT1G55150.1 33.333 372 220 10 34 385 89 452 5.76e-54 187
Msa0524910 AT1G55150.2 33.333 372 220 10 34 385 114 477 1.41e-53 186
Msa0524910 AT3G53110.1 30.946 391 231 11 48 404 90 475 2.46e-53 185
Msa0524910 AT5G60990.1 32.840 338 210 7 58 382 32 365 2.17e-51 179
Msa0524910 AT5G26742.3 32.537 335 209 6 61 384 36 364 2.35e-50 180
Msa0524910 AT5G63120.2 31.940 335 213 8 57 382 187 515 4.08e-50 178
Msa0524910 AT1G16280.1 33.043 345 218 8 57 394 80 418 4.58e-50 176
Msa0524910 AT5G26742.1 32.635 334 208 6 62 384 130 457 5.65e-50 180
Msa0524910 AT5G26742.2 32.635 334 208 6 62 384 130 457 5.70e-50 180
Msa0524910 AT2G33730.1 31.467 375 223 8 45 394 327 692 1.97e-49 179
Msa0524910 AT4G16630.1 32.222 360 230 10 57 407 189 543 3.14e-49 179
Msa0524910 AT3G58570.1 36.232 345 197 8 56 380 167 508 5.01e-49 176
Msa0524910 AT1G28180.1 33.236 343 211 8 65 397 3 337 1.18e-48 169
Msa0524910 AT3G58510.1 33.815 346 206 8 56 382 172 513 1.46e-46 169
Msa0524910 AT3G58510.3 33.815 346 206 8 56 382 172 513 1.46e-46 169
Msa0524910 AT3G58510.2 33.815 346 206 8 56 382 172 513 1.46e-46 169
Msa0524910 AT3G22330.1 31.638 354 204 10 56 382 111 453 1.52e-46 169
Msa0524910 AT3G01540.1 30.203 394 246 12 34 404 148 535 1.76e-46 169
Msa0524910 AT3G01540.4 30.203 394 246 12 34 404 148 535 2.01e-46 169
Msa0524910 AT3G01540.2 30.203 394 246 12 34 404 148 535 2.01e-46 169
Msa0524910 AT3G01540.3 30.203 394 246 12 34 404 148 535 2.01e-46 169
Msa0524910 AT3G22310.2 32.277 347 209 7 53 378 120 461 2.87e-46 168
Msa0524910 AT3G22310.1 32.277 347 209 7 53 378 120 461 3.46e-46 168
Msa0524910 AT5G14610.7 31.085 341 221 8 46 380 45 377 1.25e-45 165
Msa0524910 AT5G14610.3 31.085 341 221 8 46 380 45 377 1.25e-45 165
Msa0524910 AT2G42520.2 33.913 345 205 7 56 380 180 521 1.43e-45 167
Msa0524910 AT2G42520.1 33.913 345 205 7 56 380 180 521 1.43e-45 167
Msa0524910 AT2G42520.3 33.913 345 205 7 56 380 180 521 1.43e-45 167
Msa0524910 AT5G14610.6 32.456 342 215 10 46 380 176 508 1.97e-45 166
Msa0524910 AT5G14610.2 32.456 342 215 10 46 380 176 508 2.34e-45 166
Msa0524910 AT5G14610.5 32.456 342 215 10 46 380 184 516 3.22e-45 166
Msa0524910 AT5G14610.1 32.456 342 215 10 46 380 244 576 6.34e-45 166
Msa0524910 AT2G47330.1 31.940 335 214 8 57 382 250 579 1.82e-44 165
Msa0524910 AT1G20920.2 30.000 370 233 9 33 382 180 543 5.54e-44 164
Msa0524910 AT1G31970.1 33.038 339 211 7 57 382 136 471 1.31e-43 160
Msa0524910 AT1G20920.4 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0524910 AT1G20920.6 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0524910 AT1G20920.3 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0524910 AT1G20920.7 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0524910 AT1G20920.5 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0524910 AT1G20920.1 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0524910 AT3G06480.1 29.231 390 256 8 34 408 425 809 6.08e-43 161
Msa0524910 AT5G51280.1 29.912 341 222 7 55 382 166 502 4.47e-42 156
Msa0524910 AT4G33370.1 31.672 341 216 7 55 382 117 453 1.53e-41 154
Msa0524910 AT1G71370.1 29.762 336 217 7 61 381 42 373 9.74e-40 149
Msa0524910 AT1G77030.1 30.816 331 218 10 58 382 51 376 1.08e-38 149
Msa0524910 AT5G63630.1 28.869 336 219 6 65 382 84 417 2.52e-37 142
Msa0524910 AT5G05450.1 27.826 345 221 7 61 381 42 382 7.59e-37 142
Msa0524910 AT3G09720.2 30.159 378 236 14 42 408 150 510 1.13e-36 140
Msa0524910 AT3G09720.1 30.159 378 236 14 42 408 150 510 1.13e-36 140
Msa0524910 AT5G63630.2 28.869 336 219 6 65 382 278 611 1.74e-36 142
Msa0524910 AT3G02065.1 30.240 334 207 9 65 382 3 326 1.97e-36 137
Msa0524910 AT3G09620.1 30.270 370 203 12 33 382 385 719 3.22e-36 141
Msa0524910 AT3G09620.2 30.270 370 203 12 33 382 386 720 3.25e-36 141
Msa0524910 AT5G62190.1 32.407 324 197 10 72 380 133 449 7.74e-36 139
Msa0524910 AT3G02065.3 29.577 355 220 11 44 382 123 463 1.14e-35 137
Msa0524910 AT3G02065.2 29.577 355 220 11 44 382 123 463 1.14e-35 137
Msa0524910 AT5G08620.1 28.090 356 232 7 45 382 94 443 1.17e-35 138
Msa0524910 AT5G08610.1 28.010 382 241 7 33 382 366 745 2.66e-35 139
Msa0524910 AT3G18600.1 29.664 327 216 10 61 378 115 436 6.53e-35 136
Msa0524910 AT5G65900.1 30.678 339 198 13 61 378 180 502 1.96e-34 135
Msa0524910 AT1G12770.2 25.521 384 229 6 52 379 127 509 2.94e-34 134
Msa0524910 AT1G12770.1 25.521 384 229 6 52 379 127 509 2.94e-34 134
Msa0524910 AT1G51380.2 35.246 244 147 7 45 286 36 270 2.43e-33 126
Msa0524910 AT5G63120.1 29.932 294 191 8 57 341 187 474 3.77e-33 130
Msa0524910 AT5G63120.3 30.000 300 193 9 57 347 187 478 4.19e-33 130
Msa0524910 AT5G63120.4 30.000 300 193 9 57 347 187 478 4.19e-33 130
Msa0524910 AT5G63120.5 30.000 300 193 9 57 347 187 478 4.19e-33 130
Msa0524910 AT3G16840.2 29.358 436 230 11 53 416 210 639 4.85e-33 132
Msa0524910 AT3G16840.1 29.358 436 230 11 53 416 209 638 5.07e-33 132
Msa0524910 AT5G54910.1 28.070 342 219 11 61 386 97 427 3.18e-31 126
Msa0524910 AT1G63250.1 28.242 347 228 7 55 382 348 692 3.72e-31 126
Msa0524910 AT5G14610.4 30.476 315 201 11 46 353 184 487 2.13e-30 122
Msa0524910 AT3G06480.2 27.711 332 221 7 34 350 425 752 7.61e-29 119
Msa0524910 AT2G07750.1 28.144 334 211 9 72 382 412 739 2.09e-28 118
Msa0524910 AT2G40700.1 26.895 409 206 14 58 381 54 454 4.68e-28 117
Msa0524910 AT1G51380.4 33.641 217 134 6 45 259 36 244 8.63e-25 103
Msa0524910 AT1G51380.3 33.641 217 134 6 45 259 36 244 1.01e-24 103
Msa0524910 AT4G15850.1 26.954 371 208 10 74 382 74 443 3.93e-23 102
Msa0524910 AT5G19210.2 24.625 333 218 7 66 370 107 434 7.22e-22 97.8
Msa0524910 AT4G34910.1 25.549 364 219 9 57 370 68 429 2.23e-21 97.1
Msa0524910 AT3G06980.1 24.862 362 225 9 57 381 396 747 4.41e-21 96.3
Msa0524910 AT1G71280.2 28.378 296 169 12 61 343 43 308 1.51e-18 86.7
Msa0524910 AT1G71280.1 28.378 296 169 12 61 343 43 308 4.68e-18 86.3
Msa0524910 AT5G19210.1 24.231 260 168 6 135 370 23 277 1.06e-13 72.0
Msa0524910 AT5G19210.3 24.231 260 168 6 135 370 23 277 1.06e-13 72.0

Find 123 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTCTTGTATACTTTAAT+AGG 0.207564 3_4:-78450704 Msa0524910:three_prime_UTR
CAGCAGATTGATCCTGTTCC+AGG 0.258533 3_4:-78454571 Msa0524910:CDS
TTCTCAAACCAGAGCTTCTT+CGG 0.267756 3_4:-78455894 Msa0524910:CDS
TATCAAATCATTCATGATTT+CGG 0.280084 3_4:-78450598 Msa0524910:three_prime_UTR
ATAAAACAAACCTTTCTTCT+TGG 0.281030 3_4:+78453013 None:intergenic
ATCATAGTGGATATTGCTTT+GGG 0.302530 3_4:-78450972 Msa0524910:exon
GTTGGCCGAGCTGGAAGATT+TGG 0.303568 3_4:-78451890 Msa0524910:CDS
TCCTCGTAAGTTTCGTCCTT+TGG 0.307307 3_4:+78456161 None:intergenic
CATCATAGTGGATATTGCTT+TGG 0.320279 3_4:-78450973 Msa0524910:exon
TAAAACAAACCTTTCTTCTT+GGG 0.342819 3_4:+78453014 None:intergenic
GACTTTAGCTCCGTTGGTAT+CGG 0.343036 3_4:+78456100 None:intergenic
TTTGTTCTGAAGTGTACTTT+TGG 0.361228 3_4:-78450562 Msa0524910:three_prime_UTR
GAAGCCAAGTTAACCCTTCA+TGG 0.374844 3_4:-78453322 Msa0524910:CDS
GTAATTTGTCAAGCTAAATC+TGG 0.375081 3_4:-78454631 Msa0524910:CDS
GATTCTTGTAGCTACAGATT+TGG 0.387454 3_4:-78452099 Msa0524910:CDS
GGGGCAACACTTGGTCCGTT+TGG 0.390379 3_4:-78450952 Msa0524910:three_prime_UTR
AAATGTAATTGCAAGGCCTT+TGG 0.392224 3_4:+78451865 None:intergenic
TATGTTGGAATTCACAGTTC+AGG 0.397914 3_4:-78455931 Msa0524910:CDS
TCTCAAACCAGAGCTTCTTC+GGG 0.401740 3_4:-78455893 Msa0524910:CDS
ACTTTACAGGTTGGCCGAGC+TGG 0.402167 3_4:-78451899 Msa0524910:intron
GCCAATGCTAGTATTCTTCC+AGG 0.402281 3_4:+78454279 None:intergenic
TGTTAGTAGAGCAGCTGAGC+TGG 0.405799 3_4:-78453091 Msa0524910:CDS
CAAATTGTTGTTGGAACGCC+TGG 0.413036 3_4:-78454297 Msa0524910:CDS
CGGTGATGCTGTTGTTGAAC+TGG 0.416246 3_4:-78450731 Msa0524910:three_prime_UTR
ACCATCTATTGCCAGATAAT+GGG 0.420328 3_4:-78456188 Msa0524910:intron
GTTTCAAGGAGGGGCATACT+AGG 0.426560 3_4:-78452121 Msa0524910:CDS
GTGTTAAACCTTCTGTATGA+TGG 0.426599 3_4:-78450818 Msa0524910:three_prime_UTR
TTGATAGAAATGTGAGGAAA+AGG 0.428212 3_4:+78450615 None:intergenic
CCAGAGTGAATGCATATAGA+TGG 0.428290 3_4:+78453042 None:intergenic
TAACAACTTGGTTGAAGTCT+AGG 0.431244 3_4:+78453127 None:intergenic
GCAGAAACTTGGCCTGGAAC+AGG 0.433044 3_4:+78454559 None:intergenic
AAGTAAGTGTCTGCAGAATC+AGG 0.433468 3_4:+78452023 None:intergenic
ACTTTAGCTCCGTTGGTATC+GGG 0.446549 3_4:+78456101 None:intergenic
TATTGCTTTGGGGCAACACT+TGG 0.446693 3_4:-78450961 Msa0524910:three_prime_UTR
ACCCTCATCTACTGGATTTG+TGG 0.452586 3_4:-78450918 Msa0524910:three_prime_UTR
ACCGTTGACTTTAGCTCCGT+TGG 0.454754 3_4:+78456094 None:intergenic
TGATAAGATGCTTGAATCAC+TGG 0.464819 3_4:-78454202 Msa0524910:CDS
TGTAGGTTGAAGCGTTATAG+AGG 0.469448 3_4:-78452143 Msa0524910:intron
GCGTTCCAACAACAATTTGA+GGG 0.474065 3_4:+78454301 None:intergenic
CACAAGAGAACTAGCTTACC+AGG 0.475324 3_4:-78454521 Msa0524910:intron
TAACGATGAGCTAAAGGAAC+TGG 0.484575 3_4:+78450456 None:intergenic
GAGTGCCCTCAAATTGTTGT+TGG 0.484980 3_4:-78454306 Msa0524910:CDS
GTATGAGTACCCTCATCTAC+TGG 0.485739 3_4:-78450926 Msa0524910:three_prime_UTR
GAAGCGTTATAGAGGTTTCA+AGG 0.487117 3_4:-78452135 Msa0524910:CDS
TGTCAAGCTAAATCTGGAAT+GGG 0.490633 3_4:-78454625 Msa0524910:CDS
CAGTCCATGAAGGGTTAACT+TGG 0.491161 3_4:+78453318 None:intergenic
TTGTCAAGCTAAATCTGGAA+TGG 0.491537 3_4:-78454626 Msa0524910:CDS
CTGCAGACACTTACTTGCAC+AGG 0.493193 3_4:-78452016 Msa0524910:CDS
ACGATAGCCCGAAGAAGCTC+TGG 0.493356 3_4:+78455886 None:intergenic
CAAGAAGATCATTCAACTTG+CGG 0.494607 3_4:+78453154 None:intergenic
GCTACAGATTTGGTTGGTAG+AGG 0.500164 3_4:-78452089 Msa0524910:CDS
ACAGAACAAGTGCAGAAACT+TGG 0.502577 3_4:+78454548 None:intergenic
ACCATGCTGATGTCGGGCCT+AGG 0.510799 3_4:-78450858 Msa0524910:three_prime_UTR
TCCGTGTAACGATGAGCTAA+AGG 0.511745 3_4:+78450450 None:intergenic
GATTTGACCATGCTGATGTC+GGG 0.511765 3_4:-78450864 Msa0524910:three_prime_UTR
CATCATAACTTGCTTATCGT+GGG 0.512480 3_4:+78454040 None:intergenic
AAGACAGCAACCTTCAGATC+GGG 0.512540 3_4:+78454375 None:intergenic
ACAAGTGCAGAAACTTGGCC+TGG 0.514338 3_4:+78454553 None:intergenic
CAACACTTGGTCCGTTTGGA+CGG 0.514563 3_4:-78450948 Msa0524910:three_prime_UTR
GCACTACATCAAATTGAAAG+AGG 0.517823 3_4:-78453187 Msa0524910:CDS
AACCCTTCATGGACTGGTGC+AGG 0.517866 3_4:-78453311 Msa0524910:intron
CAAAGCAATATCCACTATGA+TGG 0.521600 3_4:+78450974 None:intergenic
CTTGTAGCTACAGATTTGGT+TGG 0.522187 3_4:-78452095 Msa0524910:CDS
AAATCATTCATGATTTCGGA+TGG 0.522299 3_4:-78450594 Msa0524910:three_prime_UTR
GAAGAATACTAGCATTGGCT+AGG 0.526509 3_4:-78454275 Msa0524910:CDS
GTGATTTGCAGGTTCAGTCA+AGG 0.528181 3_4:-78451744 Msa0524910:intron
AACAAAGTACAACACAACTA+AGG 0.529373 3_4:+78450784 None:intergenic
CTACAGATTTGGTTGGTAGA+GGG 0.530961 3_4:-78452088 Msa0524910:CDS
CCATCTATATGCATTCACTC+TGG 0.537546 3_4:-78453042 Msa0524910:CDS
CAAGTTAACCCTTCATGGAC+TGG 0.538235 3_4:-78453317 Msa0524910:CDS
TGGTTCCAAATCTTCCAGCT+CGG 0.539236 3_4:+78451885 None:intergenic
AAAGACATGAGCAACAAAAC+CGG 0.540312 3_4:+78450663 None:intergenic
CTGGCATGTCCCAAGAAGAA+AGG 0.541548 3_4:-78453023 Msa0524910:intron
ACCTCAAGCAATCCTCGGAA+TGG 0.545341 3_4:-78454656 Msa0524910:CDS
GTAGAGGTATCAATCTGCTC+AGG 0.546365 3_4:+78451697 None:intergenic
GGCGTTCCAACAACAATTTG+AGG 0.547645 3_4:+78454300 None:intergenic
AACAACTTGGTTGAAGTCTA+GGG 0.548156 3_4:+78453128 None:intergenic
GTTATAGAGGTTTCAAGGAG+GGG 0.549962 3_4:-78452130 Msa0524910:CDS
GCCTGGAAGAATACTAGCAT+TGG 0.549976 3_4:-78454280 Msa0524910:CDS
TCATCAACATAAATTTCCAT+AGG 0.552344 3_4:+78453346 None:intergenic
CGCCACAAATCCAGTAGATG+AGG 0.556237 3_4:+78450916 None:intergenic
TGATTTGACCATGCTGATGT+CGG 0.556376 3_4:-78450865 Msa0524910:three_prime_UTR
AGATATGCCATGAGTTTGAG+AGG 0.557167 3_4:-78454413 Msa0524910:CDS
GGGTACTCATACCGTCCAAA+CGG 0.561945 3_4:+78450937 None:intergenic
ACATCATAACTTGCTTATCG+TGG 0.563979 3_4:+78454039 None:intergenic
TCCTTTAGCTCATCGTTACA+CGG 0.564276 3_4:-78450451 Msa0524910:three_prime_UTR
AAAGTGCTTACTGTAGGTAG+AGG 0.564836 3_4:+78451681 None:intergenic
TACTAAACCTCTCAAACTCA+TGG 0.569538 3_4:+78454406 None:intergenic
TGCATACCTCAAGCAATCCT+CGG 0.569749 3_4:-78454661 Msa0524910:CDS
AAAGACAGCAACCTTCAGAT+CGG 0.576558 3_4:+78454374 None:intergenic
CGTTATAGAGGTTTCAAGGA+GGG 0.577094 3_4:-78452131 Msa0524910:CDS
CTACCTGCACCAGTCCATGA+AGG 0.577194 3_4:+78453308 None:intergenic
ATGAAACAAATGTAATTGCA+AGG 0.583398 3_4:+78451858 None:intergenic
CGATCAACGAAAAGTAGCCT+AGG 0.586493 3_4:+78450841 None:intergenic
TACCTACTTACCCGATCTGA+AGG 0.587362 3_4:-78454385 Msa0524910:CDS
GCTGGAAGATTTGGAACCAA+AGG 0.594660 3_4:-78451881 Msa0524910:CDS
CCAGATAATGGGAGAACCAA+AGG 0.598291 3_4:-78456177 Msa0524910:intron
GTTGAAGCAGAATATCGTAC+CGG 0.607808 3_4:-78450682 Msa0524910:three_prime_UTR
GACAAATTACATCCATTCCG+AGG 0.613516 3_4:+78454644 None:intergenic
CACATAAGCCATCATACAGA+AGG 0.615494 3_4:+78450810 None:intergenic
CTCATCTACTGGATTTGTGG+CGG 0.619714 3_4:-78450915 Msa0524910:three_prime_UTR
TGCAGACACTTACTTGCACA+GGG 0.621788 3_4:-78452015 Msa0524910:intron
AGGAACTGGTAGCATAGACA+TGG 0.626266 3_4:+78450470 None:intergenic
TACCTGCACCAGTCCATGAA+GGG 0.627063 3_4:+78453309 None:intergenic
AACCTTCAGATCGGGTAAGT+AGG 0.628828 3_4:+78454383 None:intergenic
AAGAATACTAGCATTGGCTA+GGG 0.631042 3_4:-78454274 Msa0524910:CDS
CATGTGCAGTGCCATCATAG+TGG 0.639227 3_4:-78450985 Msa0524910:intron
ATCATAACTTGCTTATCGTG+GGG 0.649459 3_4:+78454041 None:intergenic
GCCACAAATCCAGTAGATGA+GGG 0.650591 3_4:+78450917 None:intergenic
GCCTAGGCCCGACATCAGCA+TGG 0.650908 3_4:+78450857 None:intergenic
TCCATTCCGAGGATTGCTTG+AGG 0.655490 3_4:+78454655 None:intergenic
GACAAAGCTCCCGATACCAA+CGG 0.662798 3_4:-78456110 Msa0524910:CDS
GGTCAATATCAAAGTTCACA+AGG 0.667495 3_4:-78454343 Msa0524910:CDS
ACCAAAGGACGAAACTTACG+AGG 0.668863 3_4:-78456162 Msa0524910:CDS
ACTGGTAGCATAGACATGGA+AGG 0.671581 3_4:+78450474 None:intergenic
ACCAACGGAGCTAAAGTCAA+CGG 0.673145 3_4:-78456095 Msa0524910:CDS
GGAAGAGCTTCTCGATTACG+AGG 0.681000 3_4:-78456141 Msa0524910:CDS
TCATAGTGGATATTGCTTTG+GGG 0.681035 3_4:-78450971 Msa0524910:exon
GATAAGATGCTTGAATCACT+GGG 0.702068 3_4:-78454201 Msa0524910:intron
AGAGCTTCTCGATTACGAGG+AGG 0.710082 3_4:-78456138 Msa0524910:CDS
AATGATTTGATAGAAATGTG+AGG 0.712968 3_4:+78450609 None:intergenic
GCGTTATAGAGGTTTCAAGG+AGG 0.725932 3_4:-78452132 Msa0524910:CDS
AGTCGAGAGAACAAAGACAG+CGG 0.750658 3_4:+78454597 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAACATAATATTATAA+AGG + chr3_4:78451894-78451913 None:intergenic 10.0%
!! ACATTAAACAAAAATTATAA+AGG + chr3_4:78452065-78452084 None:intergenic 10.0%
!!! AATCTTATTATTTTATTTGT+AGG - chr3_4:78454795-78454814 Msa0524910:intron 10.0%
!!! ATTTATTTTCAATTTTTCTT+AGG - chr3_4:78455364-78455383 Msa0524910:intron 10.0%
!!! AATGACAAAAAATTGATAAT+TGG + chr3_4:78450471-78450490 None:intergenic 15.0%
!!! TCTAAATCTCTATTAATTTT+AGG - chr3_4:78450700-78450719 Msa0524910:three_prime_UTR 15.0%
!!! CTAAATCTCTATTAATTTTA+GGG - chr3_4:78450701-78450720 Msa0524910:three_prime_UTR 15.0%
!!! TTCCATCTTTATTTATATTT+TGG - chr3_4:78451128-78451147 Msa0524910:intron 15.0%
!! ATCCAAAATATAAATAAAGA+TGG + chr3_4:78451133-78451152 None:intergenic 15.0%
!! TGAAATTTCTTAAAAGAATA+GGG - chr3_4:78451393-78451412 Msa0524910:intron 15.0%
!! AATATTATGTTGAATTACTA+TGG - chr3_4:78451898-78451917 Msa0524910:intron 15.0%
!!! TTTTTTTTTTAACACTTAAC+AGG - chr3_4:78452127-78452146 Msa0524910:CDS 15.0%
!!! TACTTTTTTCAAACATTTTT+GGG - chr3_4:78454041-78454060 Msa0524910:CDS 15.0%
!! ATAAATGAAAGATCAAAATA+AGG + chr3_4:78454986-78455005 None:intergenic 15.0%
!!! TATTTACTTTCACTAAATTT+TGG - chr3_4:78455003-78455022 Msa0524910:intron 15.0%
!! TTTATATTTATGATTTGAAC+TGG - chr3_4:78455568-78455587 Msa0524910:intron 15.0%
!!! TTTCTCGTTAAATTTTTTTT+TGG + chr3_4:78455828-78455847 None:intergenic 15.0%
!!! AAAAATTGATAATTGGCTAA+TGG + chr3_4:78450464-78450483 None:intergenic 20.0%
!! TTTGTAATAAGTAAAATCAG+TGG + chr3_4:78450923-78450942 None:intergenic 20.0%
!!! TGTATCTTTGTTCTTTTTTA+TGG - chr3_4:78450994-78451013 Msa0524910:intron 20.0%
!! TAATATCCTTAAATTCTCAT+TGG - chr3_4:78451242-78451261 Msa0524910:intron 20.0%
!! TAATATTAACAGATGTGATT+TGG - chr3_4:78451342-78451361 Msa0524910:intron 20.0%
!! AATATTAACAGATGTGATTT+GGG - chr3_4:78451343-78451362 Msa0524910:intron 20.0%
!! GTGAAATTTCTTAAAAGAAT+AGG - chr3_4:78451392-78451411 Msa0524910:intron 20.0%
!!! GAGGGATTTAATTTTAAAAT+TGG - chr3_4:78451424-78451443 Msa0524910:intron 20.0%
!!! GGATTTAATTTTAAAATTGG+AGG - chr3_4:78451427-78451446 Msa0524910:intron 20.0%
!!! GTTGTTTTTATATGCTATAT+TGG - chr3_4:78451642-78451661 Msa0524910:intron 20.0%
!! AAGGAAAAAATAAAGAGAAA+GGG + chr3_4:78451968-78451987 None:intergenic 20.0%
!! AAAGGAAAAAATAAAGAGAA+AGG + chr3_4:78451969-78451988 None:intergenic 20.0%
!! TATATACAAAAATTTCGCAA+AGG + chr3_4:78451987-78452006 None:intergenic 20.0%
!!! TTTGCGAAATTTTTGTATAT+AGG - chr3_4:78451986-78452005 Msa0524910:intron 20.0%
!!! GTATTTTCATATAAATGACA+AGG - chr3_4:78452091-78452110 Msa0524910:CDS 20.0%
!! TAATATTCAAACTAAACAGA+AGG + chr3_4:78452795-78452814 None:intergenic 20.0%
!!! GTACTTTTTTCAAACATTTT+TGG - chr3_4:78454040-78454059 Msa0524910:CDS 20.0%
!!! ACTTTTTTCAAACATTTTTG+GGG - chr3_4:78454042-78454061 Msa0524910:CDS 20.0%
!! TTAGTGTTAATACATTTAAG+TGG + chr3_4:78454087-78454106 None:intergenic 20.0%
!!! TTTTTAACTTTGAATGACAA+AGG - chr3_4:78454598-78454617 Msa0524910:CDS 20.0%
!! AATAGAATAACAGTAAAACT+GGG + chr3_4:78454736-78454755 None:intergenic 20.0%
!! TAATAGAATAACAGTAAAAC+TGG + chr3_4:78454737-78454756 None:intergenic 20.0%
!!! TTTCACTAAATTTTGGTTTA+GGG - chr3_4:78455010-78455029 Msa0524910:intron 20.0%
!! AACATAATTAGAAATGCTAA+TGG + chr3_4:78455187-78455206 None:intergenic 20.0%
!!! TTTTATCAATGCATTACAAA+AGG - chr3_4:78455490-78455509 Msa0524910:intron 20.0%
!!! TTTTTATGTTTCATGATGTT+AGG - chr3_4:78455640-78455659 Msa0524910:intron 20.0%
!!! CATATGTTCTACATTTTTTA+GGG + chr3_4:78455795-78455814 None:intergenic 20.0%
!!! ACATATGTTCTACATTTTTT+AGG + chr3_4:78455796-78455815 None:intergenic 20.0%
!! TATCAAATCATTCATGATTT+CGG - chr3_4:78456357-78456376 Msa0524910:intron 20.0%
! TGTTAGACGAAAAAGAATTT+GGG + chr3_4:78450554-78450573 None:intergenic 25.0%
! TTGTTAGACGAAAAAGAATT+TGG + chr3_4:78450555-78450574 None:intergenic 25.0%
! ATCATTCAAAAATTTGTCGA+AGG - chr3_4:78451456-78451475 Msa0524910:intron 25.0%
! ATAAGCTTATTTATCCAAAC+AGG + chr3_4:78451521-78451540 None:intergenic 25.0%
!! GTTTTTATATGCTATATTGG+AGG - chr3_4:78451645-78451664 Msa0524910:intron 25.0%
! AATGAACGAATGAAAAAAAC+AGG + chr3_4:78451871-78451890 None:intergenic 25.0%
! TAAACGAATGAAAAAACAGT+CGG + chr3_4:78452040-78452059 None:intergenic 25.0%
!!! TTTAGTTTGAATATTACCAC+TGG - chr3_4:78452799-78452818 Msa0524910:intron 25.0%
! TAAGAACAATAAAAACCACA+TGG + chr3_4:78452839-78452858 None:intergenic 25.0%
! ATCAATCTTTACTTCTGATA+GGG - chr3_4:78453090-78453109 Msa0524910:CDS 25.0%
! TGTTAAGTAAAATTGGACAA+AGG + chr3_4:78453138-78453157 None:intergenic 25.0%
! TTTGACAGTAAATCATGTTA+GGG + chr3_4:78453575-78453594 None:intergenic 25.0%
! ATTTGACAGTAAATCATGTT+AGG + chr3_4:78453576-78453595 None:intergenic 25.0%
! TCATCAACATAAATTTCCAT+AGG + chr3_4:78453612-78453631 None:intergenic 25.0%
! TATAAGCAAACAACTTGAAA+AGG + chr3_4:78453674-78453693 None:intergenic 25.0%
!!! ACAGATAAGACATTTTAAGA+GGG + chr3_4:78453720-78453739 None:intergenic 25.0%
!! TACAGATAAGACATTTTAAG+AGG + chr3_4:78453721-78453740 None:intergenic 25.0%
!! TTTTCACAAAGATAACAACT+TGG + chr3_4:78453843-78453862 None:intergenic 25.0%
! TAAAACAAACCTTTCTTCTT+GGG + chr3_4:78453944-78453963 None:intergenic 25.0%
! ATAAAACAAACCTTTCTTCT+TGG + chr3_4:78453945-78453964 None:intergenic 25.0%
!! TTCATGTTTTGCAATTCTAT+TGG - chr3_4:78453997-78454016 Msa0524910:CDS 25.0%
!! TGTGAGCTTTTTGAATATAA+GGG - chr3_4:78454216-78454235 Msa0524910:CDS 25.0%
!! AGCATTGAATAAATCTCTTA+GGG + chr3_4:78454479-78454498 None:intergenic 25.0%
!! TAGCATTGAATAAATCTCTT+AGG + chr3_4:78454480-78454499 None:intergenic 25.0%
! TTGTTCTTTCAAATCAAAAG+TGG + chr3_4:78454561-78454580 None:intergenic 25.0%
! GAATTGTCAATAGACAATTA+AGG + chr3_4:78454660-78454679 None:intergenic 25.0%
! ATAGAATAACAGTAAAACTG+GGG + chr3_4:78454735-78454754 None:intergenic 25.0%
!!! CTTTCACTAAATTTTGGTTT+AGG - chr3_4:78455009-78455028 Msa0524910:intron 25.0%
! ATGAAACAAATGTAATTGCA+AGG + chr3_4:78455100-78455119 None:intergenic 25.0%
! ATTTGTGCTTTCCTAAAATT+TGG - chr3_4:78455517-78455536 Msa0524910:intron 25.0%
! AAATGTAGAACATATGTTTG+TGG - chr3_4:78455799-78455818 Msa0524910:intron 25.0%
! ATCAAACTAATTATGCAACT+TGG + chr3_4:78455883-78455902 None:intergenic 25.0%
! AATATTAATCTCTTCTGACT+TGG - chr3_4:78455940-78455959 Msa0524910:intron 25.0%
! ACACTCTTGTATACTTTAAT+AGG - chr3_4:78456251-78456270 Msa0524910:intron 25.0%
! AATGATTTGATAGAAATGTG+AGG + chr3_4:78456349-78456368 None:intergenic 25.0%
!!! GCTCAAAATCTGTTTTTTTT+CGG - chr3_4:78456419-78456438 Msa0524910:intron 25.0%
!!! CTCAAAATCTGTTTTTTTTC+GGG - chr3_4:78456420-78456439 Msa0524910:intron 25.0%
!!! TATTTTCAGATTGATTTTGC+AGG - chr3_4:78456447-78456466 Msa0524910:intron 25.0%
TTAGACGAAAAAGAATTTGG+GGG + chr3_4:78450552-78450571 None:intergenic 30.0%
GTTAGACGAAAAAGAATTTG+GGG + chr3_4:78450553-78450572 None:intergenic 30.0%
!!! ATTCTAGGGTTTTAGAAGAA+GGG + chr3_4:78450670-78450689 None:intergenic 30.0%
!!! TATTCTAGGGTTTTAGAAGA+AGG + chr3_4:78450671-78450690 None:intergenic 30.0%
!! TAGAGATAGAGAGTATTCTA+GGG + chr3_4:78450684-78450703 None:intergenic 30.0%
!! TTAGAGATAGAGAGTATTCT+AGG + chr3_4:78450685-78450704 None:intergenic 30.0%
ACAAGAAACAACTTACTTCT+TGG + chr3_4:78450894-78450913 None:intergenic 30.0%
ACTACATAGAAGAAACATCA+TGG + chr3_4:78450971-78450990 None:intergenic 30.0%
!!! TCTTTGTTCTTTTTTATGGC+AGG - chr3_4:78450998-78451017 Msa0524910:intron 30.0%
!!! CTTTGTTCTTTTTTATGGCA+GGG - chr3_4:78450999-78451018 Msa0524910:intron 30.0%
!!! TTTGTTCTTTTTTATGGCAG+GGG - chr3_4:78451000-78451019 Msa0524910:intron 30.0%
TTATGATGATTCCTGTAGTA+TGG - chr3_4:78451202-78451221 Msa0524910:intron 30.0%
AACAAATTACTCCATACTAC+AGG + chr3_4:78451216-78451235 None:intergenic 30.0%
TATCCTTAAATTCTCATTGG+AGG - chr3_4:78451245-78451264 Msa0524910:intron 30.0%
AAACCTCCAATGAGAATTTA+AGG + chr3_4:78451251-78451270 None:intergenic 30.0%
! TTGGAGGTTTTTGATAAATG+TGG - chr3_4:78451261-78451280 Msa0524910:intron 30.0%
! TGGAGGTTTTTGATAAATGT+GGG - chr3_4:78451262-78451281 Msa0524910:intron 30.0%
GTGAACAAGACTTAATCATA+GGG + chr3_4:78451802-78451821 None:intergenic 30.0%
AGTGAACAAGACTTAATCAT+AGG + chr3_4:78451803-78451822 None:intergenic 30.0%
AATAAAGAGAAAGGGAGTAA+GGG + chr3_4:78451960-78451979 None:intergenic 30.0%
AAATAAAGAGAAAGGGAGTA+AGG + chr3_4:78451961-78451980 None:intergenic 30.0%
! GCGAAATTTTTGTATATAGG+TGG - chr3_4:78451989-78452008 Msa0524910:intron 30.0%
AAACGAATGAAAAAACAGTC+GGG + chr3_4:78452039-78452058 None:intergenic 30.0%
!! CAAATTAAAAGCGTCAGAAA+TGG - chr3_4:78452205-78452224 Msa0524910:intron 30.0%
!!! TGGTTTATTTTACTTACCGT+TGG - chr3_4:78452225-78452244 Msa0524910:intron 30.0%
GATGATGAAGCAAAGAAAAA+AGG + chr3_4:78452261-78452280 None:intergenic 30.0%
! GTAATTTGTCAAGCTAAATC+TGG - chr3_4:78452324-78452343 Msa0524910:intron 30.0%
TAGCTTACCAGGTATTTATT+GGG - chr3_4:78452445-78452464 Msa0524910:intron 30.0%
!!! ATGTTTTTTTTGCAGACATG+AGG - chr3_4:78452861-78452880 Msa0524910:intron 30.0%
!!! GCATAAATTTTTTGCAGACT+GGG + chr3_4:78452970-78452989 None:intergenic 30.0%
!!! TGCATAAATTTTTTGCAGAC+TGG + chr3_4:78452971-78452990 None:intergenic 30.0%
ATGCAAGATGTAATTTCTCA+TGG - chr3_4:78452986-78453005 Msa0524910:intron 30.0%
TCAAACAACTAAAAACCTCA+GGG + chr3_4:78453057-78453076 None:intergenic 30.0%
TTCAAACAACTAAAAACCTC+AGG + chr3_4:78453058-78453077 None:intergenic 30.0%
!! TTTTAGTTGTTTGAATGCTG+TGG - chr3_4:78453063-78453082 Msa0524910:CDS 30.0%
CATCAATCTTTACTTCTGAT+AGG - chr3_4:78453089-78453108 Msa0524910:CDS 30.0%
AGCAGGTTGTTAAGTAAAAT+TGG + chr3_4:78453145-78453164 None:intergenic 30.0%
! AATTTTACTTAACAACCTGC+TGG - chr3_4:78453144-78453163 Msa0524910:CDS 30.0%
! TCTCTAATATTTGCTAGTGT+TGG - chr3_4:78453293-78453312 Msa0524910:intron 30.0%
! CTCTAATATTTGCTAGTGTT+GGG - chr3_4:78453294-78453313 Msa0524910:intron 30.0%
!!! ATGGGTTTTTTTCATTGTGT+TGG - chr3_4:78453318-78453337 Msa0524910:CDS 30.0%
!!! TGGGTTTTTTTCATTGTGTT+GGG - chr3_4:78453319-78453338 Msa0524910:CDS 30.0%
!!! TTGTTCCTGTCATTTTTCTT+TGG - chr3_4:78453407-78453426 Msa0524910:intron 30.0%
!!! TGTTCCTGTCATTTTTCTTT+GGG - chr3_4:78453408-78453427 Msa0524910:intron 30.0%
ATAAATTTCCATAGGCTGAA+AGG + chr3_4:78453604-78453623 None:intergenic 30.0%
!! CAGATAAGACATTTTAAGAG+GGG + chr3_4:78453719-78453738 None:intergenic 30.0%
GTTAATACATTTAAGTGGCA+TGG + chr3_4:78454082-78454101 None:intergenic 30.0%
TAATCTGTAGCTCACAATAA+TGG - chr3_4:78454104-78454123 Msa0524910:intron 30.0%
! GTGTGAGCTTTTTGAATATA+AGG - chr3_4:78454215-78454234 Msa0524910:CDS 30.0%
! TTTGAATATAAGGGTGTGTT+TGG - chr3_4:78454225-78454244 Msa0524910:CDS 30.0%
ATGCTATTATGACATTACTG+AGG - chr3_4:78454494-78454513 Msa0524910:intron 30.0%
TTAACTTTGAATGACAAAGG+AGG - chr3_4:78454601-78454620 Msa0524910:CDS 30.0%
GTTATTCTATTAGAGTGAAG+TGG - chr3_4:78454745-78454764 Msa0524910:intron 30.0%
TTGATGTTCTCAACAATGTA+AGG - chr3_4:78455132-78455151 Msa0524910:intron 30.0%
TGATGTTCTCAACAATGTAA+GGG - chr3_4:78455133-78455152 Msa0524910:intron 30.0%
!! TTATGTTTGTTGTGATTTGC+AGG - chr3_4:78455200-78455219 Msa0524910:intron 30.0%
!! AATGAAAAAGTGCTTACTGT+AGG + chr3_4:78455283-78455302 None:intergenic 30.0%
!! TCCTGTATTGATTTGTTTGT+AGG - chr3_4:78455316-78455335 Msa0524910:intron 30.0%
TCCTACAAACAAATCAATAC+AGG + chr3_4:78455320-78455339 None:intergenic 30.0%
!! GTATTGATTTGTTTGTAGGA+CGG - chr3_4:78455320-78455339 Msa0524910:intron 30.0%
CGGAATTGGAATTATAAGTT+AGG - chr3_4:78455340-78455359 Msa0524910:intron 30.0%
GTATTCCATTCGATTTCTAA+TGG - chr3_4:78455428-78455447 Msa0524910:intron 30.0%
ATTGACCATTAGAAATCGAA+TGG + chr3_4:78455436-78455455 None:intergenic 30.0%
AATCGTGCAAAATTAGCAAA+TGG + chr3_4:78455467-78455486 None:intergenic 30.0%
CAGCTAAGAAAATGAGTATT+TGG + chr3_4:78455616-78455635 None:intergenic 30.0%
TTTCTTTGTACTTGAGAGTT+AGG - chr3_4:78455675-78455694 Msa0524910:intron 30.0%
!! ATCATAGTGGATATTGCTTT+GGG - chr3_4:78455983-78456002 Msa0524910:intron 30.0%
AACAAAGTACAACACAACTA+AGG + chr3_4:78456174-78456193 None:intergenic 30.0%
!! TTTACGATCATGTTTTGAGT+TGG - chr3_4:78456194-78456213 Msa0524910:intron 30.0%
!!! TGTTTTGAGTTGGTATTTGA+CGG - chr3_4:78456204-78456223 Msa0524910:intron 30.0%
!!! TCATGTCTTTGGTGTTTTTA+CGG - chr3_4:78456305-78456324 Msa0524910:intron 30.0%
TTGATAGAAATGTGAGGAAA+AGG + chr3_4:78456343-78456362 None:intergenic 30.0%
AAATCATTCATGATTTCGGA+TGG - chr3_4:78456361-78456380 Msa0524910:intron 30.0%
!!! TTTGTTCTGAAGTGTACTTT+TGG - chr3_4:78456393-78456412 Msa0524910:intron 30.0%
GAATTGAGGAATTAGGGTTA+GGG + chr3_4:78450602-78450621 None:intergenic 35.0%
TGAATTGAGGAATTAGGGTT+AGG + chr3_4:78450603-78450622 None:intergenic 35.0%
GGTTGTGAATTGAGGAATTA+GGG + chr3_4:78450608-78450627 None:intergenic 35.0%
AGGTTGTGAATTGAGGAATT+AGG + chr3_4:78450609-78450628 None:intergenic 35.0%
GAAATGAAAGAGTGAAAGGA+AGG + chr3_4:78450629-78450648 None:intergenic 35.0%
ACCATCTATTGCCAGATAAT+GGG - chr3_4:78450767-78450786 Msa0524910:three_prime_UTR 35.0%
TATGTTGGAATTCACAGTTC+AGG - chr3_4:78451024-78451043 Msa0524910:intron 35.0%
TTCAGAAGGATGTTCAAATC+CGG + chr3_4:78451100-78451119 None:intergenic 35.0%
ATGGAAAATTTGCCTTCAGA+AGG + chr3_4:78451114-78451133 None:intergenic 35.0%
! ATGTGATTTGGGTTTGAAGA+TGG - chr3_4:78451354-78451373 Msa0524910:intron 35.0%
TTAAAAGAATAGGGTAGCAG+TGG - chr3_4:78451402-78451421 Msa0524910:intron 35.0%
! CTATATGTGAGGTGCTAATT+TGG + chr3_4:78451483-78451502 None:intergenic 35.0%
AATTAGCACCTCACATATAG+TGG - chr3_4:78451483-78451502 Msa0524910:intron 35.0%
!! GTCTTGTTCACTCTCATTTT+AGG - chr3_4:78451811-78451830 Msa0524910:intron 35.0%
ATAAAGAGAAAGGGAGTAAG+GGG + chr3_4:78451959-78451978 None:intergenic 35.0%
CATCTATCACAATACTGTTC+TGG - chr3_4:78452155-78452174 Msa0524910:intron 35.0%
TTGTCAAGCTAAATCTGGAA+TGG - chr3_4:78452329-78452348 Msa0524910:intron 35.0%
! TGTCAAGCTAAATCTGGAAT+GGG - chr3_4:78452330-78452349 Msa0524910:intron 35.0%
CTAGCTTACCAGGTATTTAT+TGG - chr3_4:78452444-78452463 Msa0524910:intron 35.0%
AGCTTACCAGGTATTTATTG+GGG - chr3_4:78452446-78452465 Msa0524910:intron 35.0%
ATGGCATATCTGAAAGGAAA+AGG + chr3_4:78452533-78452552 None:intergenic 35.0%
AAACTCATGGCATATCTGAA+AGG + chr3_4:78452539-78452558 None:intergenic 35.0%
TACTAAACCTCTCAAACTCA+TGG + chr3_4:78452552-78452571 None:intergenic 35.0%
GGTCAATATCAAAGTTCACA+AGG - chr3_4:78452612-78452631 Msa0524910:intron 35.0%
!! AAGAATACTAGCATTGGCTA+GGG - chr3_4:78452681-78452700 Msa0524910:intron 35.0%
TGATAAGATGCTTGAATCAC+TGG - chr3_4:78452753-78452772 Msa0524910:intron 35.0%
GATAAGATGCTTGAATCACT+GGG - chr3_4:78452754-78452773 Msa0524910:intron 35.0%
!!! GTCTTCTCTTATTTTCCATG+TGG - chr3_4:78452821-78452840 Msa0524910:intron 35.0%
!! ATCATAACTTGCTTATCGTG+GGG + chr3_4:78452917-78452936 None:intergenic 35.0%
!! CATCATAACTTGCTTATCGT+GGG + chr3_4:78452918-78452937 None:intergenic 35.0%
!! ACATCATAACTTGCTTATCG+TGG + chr3_4:78452919-78452938 None:intergenic 35.0%
!!! TAAATTTTTTGCAGACTGGG+CGG + chr3_4:78452967-78452986 None:intergenic 35.0%
! ATATTTGCTAGTGTTGGGTA+TGG - chr3_4:78453299-78453318 Msa0524910:intron 35.0%
! TATTTGCTAGTGTTGGGTAT+GGG - chr3_4:78453300-78453319 Msa0524910:intron 35.0%
!!! CACTTTTTCTTTGAAGAGGA+GGG - chr3_4:78453344-78453363 Msa0524910:CDS 35.0%
!! ACTTTTTCTTTGAAGAGGAG+GGG - chr3_4:78453345-78453364 Msa0524910:CDS 35.0%
!!! TTGGTTGGGTTGAGATATTT+TGG - chr3_4:78453382-78453401 Msa0524910:intron 35.0%
!!! TGGTTGGGTTGAGATATTTT+GGG - chr3_4:78453383-78453402 Msa0524910:intron 35.0%
GTGACAAAAAAGTTTCTGCA+AGG - chr3_4:78453462-78453481 Msa0524910:intron 35.0%
ATCCATCATTCATTTCGTTG+TGG - chr3_4:78453527-78453546 Msa0524910:intron 35.0%
ATCCACAACGAAATGAATGA+TGG + chr3_4:78453532-78453551 None:intergenic 35.0%
! AATTTGTTCCTTTCAGCCTA+TGG - chr3_4:78453593-78453612 Msa0524910:intron 35.0%
AATTTGATGTAGTGCTGTCA+CGG + chr3_4:78453763-78453782 None:intergenic 35.0%
GCACTACATCAAATTGAAAG+AGG - chr3_4:78453768-78453787 Msa0524910:intron 35.0%
CAAGAAGATCATTCAACTTG+CGG + chr3_4:78453804-78453823 None:intergenic 35.0%
AACAACTTGGTTGAAGTCTA+GGG + chr3_4:78453830-78453849 None:intergenic 35.0%
TAACAACTTGGTTGAAGTCT+AGG + chr3_4:78453831-78453850 None:intergenic 35.0%
!! ACATTTTTGGGGATTTTGTG+TGG - chr3_4:78454053-78454072 Msa0524910:CDS 35.0%
! GTAAATTCTACACCTCCTTT+TGG + chr3_4:78454132-78454151 None:intergenic 35.0%
TAAATCTCTTAGGGTGTGTT+TGG + chr3_4:78454470-78454489 None:intergenic 35.0%
ATGACATTACTGAGGAATGA+TGG - chr3_4:78454502-78454521 Msa0524910:intron 35.0%
TATTGACAATTCTGTTGCAG+TGG - chr3_4:78454668-78454687 Msa0524910:intron 35.0%
ATTGACAATTCTGTTGCAGT+GGG - chr3_4:78454669-78454688 Msa0524910:intron 35.0%
GATTCTTGTAGCTACAGATT+TGG - chr3_4:78454856-78454875 Msa0524910:intron 35.0%
AAATGTAATTGCAAGGCCTT+TGG + chr3_4:78455093-78455112 None:intergenic 35.0%
ATTTGTTTGTAGGACGGAAT+TGG - chr3_4:78455326-78455345 Msa0524910:intron 35.0%
! GAGACACTCAACCAAATTTT+AGG + chr3_4:78455531-78455550 None:intergenic 35.0%
CAAAGCAATATCCACTATGA+TGG + chr3_4:78455984-78456003 None:intergenic 35.0%
!! CATCATAGTGGATATTGCTT+TGG - chr3_4:78455982-78456001 Msa0524910:intron 35.0%
!! TCATAGTGGATATTGCTTTG+GGG - chr3_4:78455984-78456003 Msa0524910:intron 35.0%
GTGTTAAACCTTCTGTATGA+TGG - chr3_4:78456137-78456156 Msa0524910:CDS 35.0%
AAAGACATGAGCAACAAAAC+CGG + chr3_4:78456295-78456314 None:intergenic 35.0%
!! TTTCAGATTGATTTTGCAGG+TGG - chr3_4:78456450-78456469 Msa0524910:intron 35.0%
GAAAGGAAGGTTGTGAATTG+AGG + chr3_4:78450616-78450635 None:intergenic 40.0%
CTGCGAAATGAAAGAGTGAA+AGG + chr3_4:78450633-78450652 None:intergenic 40.0%
CTTTCACTCTTTCATTTCGC+AGG - chr3_4:78450631-78450650 Msa0524910:three_prime_UTR 40.0%
CACCATCTATTGCCAGATAA+TGG - chr3_4:78450766-78450785 Msa0524910:three_prime_UTR 40.0%
TCCCATTATCTGGCAATAGA+TGG + chr3_4:78450771-78450790 None:intergenic 40.0%
TTCTCAAACCAGAGCTTCTT+CGG - chr3_4:78451061-78451080 Msa0524910:intron 40.0%
GGATTTGAACATCCTTCTGA+AGG - chr3_4:78451099-78451118 Msa0524910:intron 40.0%
TAGTCCATCCACTATATGTG+AGG + chr3_4:78451494-78451513 None:intergenic 40.0%
!! ACATATAGTGGATGGACTAC+AGG - chr3_4:78451495-78451514 Msa0524910:intron 40.0%
TCAGATAAGCCAATCCAAAC+AGG - chr3_4:78451776-78451795 Msa0524910:intron 40.0%
ACTTAATCATAGGGCCTGTT+TGG + chr3_4:78451793-78451812 None:intergenic 40.0%
TCTGGAGAACTAACATGCTT+TGG - chr3_4:78452173-78452192 Msa0524910:intron 40.0%
!! TTACTTACCGTTGGTTCCTT+CGG - chr3_4:78452234-78452253 Msa0524910:intron 40.0%
GACAAATTACATCCATTCCG+AGG + chr3_4:78452314-78452333 None:intergenic 40.0%
ACAGAACAAGTGCAGAAACT+TGG + chr3_4:78452410-78452429 None:intergenic 40.0%
AGATATGCCATGAGTTTGAG+AGG - chr3_4:78452542-78452561 Msa0524910:intron 40.0%
AAAGACAGCAACCTTCAGAT+CGG + chr3_4:78452584-78452603 None:intergenic 40.0%
! CTGAAGGTTGCTGTCTTTTA+TGG - chr3_4:78452586-78452605 Msa0524910:intron 40.0%
! AAGGTTGCTGTCTTTTATGG+TGG - chr3_4:78452589-78452608 Msa0524910:intron 40.0%
! AGGTTGCTGTCTTTTATGGT+GGG - chr3_4:78452590-78452609 Msa0524910:intron 40.0%
GCGTTCCAACAACAATTTGA+GGG + chr3_4:78452657-78452676 None:intergenic 40.0%
!! GAAGAATACTAGCATTGGCT+AGG - chr3_4:78452680-78452699 Msa0524910:intron 40.0%
GGAAAATAAGAGAAGACCAG+TGG + chr3_4:78452818-78452837 None:intergenic 40.0%
CTAAAAACCTCAGGGAATGT+GGG + chr3_4:78453049-78453068 None:intergenic 40.0%
ACTAAAAACCTCAGGGAATG+TGG + chr3_4:78453050-78453069 None:intergenic 40.0%
ATTGGAGTAGAAGATGTGGA+TGG - chr3_4:78453192-78453211 Msa0524910:intron 40.0%
TTGGAGTAGAAGATGTGGAT+GGG - chr3_4:78453193-78453212 Msa0524910:intron 40.0%
TTTAGTAATGCTCCTGACTG+TGG - chr3_4:78453219-78453238 Msa0524910:intron 40.0%
TTAGTAATGCTCCTGACTGT+GGG - chr3_4:78453220-78453239 Msa0524910:intron 40.0%
!!! GGTGCACTTTTTCTTTGAAG+AGG - chr3_4:78453340-78453359 Msa0524910:CDS 40.0%
!!! GCACTTTTTCTTTGAAGAGG+AGG - chr3_4:78453343-78453362 Msa0524910:CDS 40.0%
TGCACCCAAAGAAAAATGAC+AGG + chr3_4:78453415-78453434 None:intergenic 40.0%
! TTGTGGATTCCATTAGCTTG+AGG - chr3_4:78453544-78453563 Msa0524910:intron 40.0%
CCAGAGTGAATGCATATAGA+TGG + chr3_4:78453916-78453935 None:intergenic 40.0%
CCATCTATATGCATTCACTC+TGG - chr3_4:78453913-78453932 Msa0524910:intron 40.0%
AAAATGATTCCCAGCATCTG+CGG + chr3_4:78453975-78453994 None:intergenic 40.0%
! CTCACAATAATGGTGCCAAA+AGG - chr3_4:78454114-78454133 Msa0524910:intron 40.0%
! ACAATAATGGTGCCAAAAGG+AGG - chr3_4:78454117-78454136 Msa0524910:intron 40.0%
TCTGAAAACGCTTAGACAAG+AGG + chr3_4:78454154-78454173 None:intergenic 40.0%
! ATAAGGGTGTGTTTGGATTG+AGG - chr3_4:78454232-78454251 Msa0524910:CDS 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG - chr3_4:78454233-78454252 Msa0524910:CDS 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr3_4:78454239-78454258 Msa0524910:CDS 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr3_4:78454243-78454262 Msa0524910:CDS 40.0%
TTTGGATTGAGGGTTTGGAA+GGG + chr3_4:78454452-78454471 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr3_4:78454462-78454481 None:intergenic 40.0%
! CATTACTGAGGAATGATGGA+TGG - chr3_4:78454506-78454525 Msa0524910:intron 40.0%
TTGAATGACAAAGGAGGTTC+AGG - chr3_4:78454607-78454626 Msa0524910:CDS 40.0%
! TGTAGGTTGAAGCGTTATAG+AGG - chr3_4:78454812-78454831 Msa0524910:intron 40.0%
! GAAGCGTTATAGAGGTTTCA+AGG - chr3_4:78454820-78454839 Msa0524910:intron 40.0%
CGTTATAGAGGTTTCAAGGA+GGG - chr3_4:78454824-78454843 Msa0524910:intron 40.0%
GTTATAGAGGTTTCAAGGAG+GGG - chr3_4:78454825-78454844 Msa0524910:intron 40.0%
! CTTGTAGCTACAGATTTGGT+TGG - chr3_4:78454860-78454879 Msa0524910:intron 40.0%
!! CTACAGATTTGGTTGGTAGA+GGG - chr3_4:78454867-78454886 Msa0524910:intron 40.0%
AAGTAAGTGTCTGCAGAATC+AGG + chr3_4:78454935-78454954 None:intergenic 40.0%
! TTAGGGTAGTCTGACTCTTT+TGG - chr3_4:78455027-78455046 Msa0524910:intron 40.0%
!! CTTTTGGAGGGATACTTTAC+AGG - chr3_4:78455043-78455062 Msa0524910:intron 40.0%
! AAAGTGCTTACTGTAGGTAG+AGG + chr3_4:78455277-78455296 None:intergenic 40.0%
AATTATGCAACTTGGTCCCT+CGG + chr3_4:78455875-78455894 None:intergenic 40.0%
!!! GATTTGTGGCGGAGATTTTT+TGG - chr3_4:78456051-78456070 Msa0524910:intron 40.0%
!!! TGGCGGAGATTTTTTGGAAA+AGG - chr3_4:78456057-78456076 Msa0524910:intron 40.0%
!!! GGCGGAGATTTTTTGGAAAA+GGG - chr3_4:78456058-78456077 Msa0524910:intron 40.0%
TGATTTGACCATGCTGATGT+CGG - chr3_4:78456090-78456109 Msa0524910:CDS 40.0%
!!! CTAGGCTACTTTTCGTTGAT+CGG - chr3_4:78456115-78456134 Msa0524910:CDS 40.0%
CACATAAGCCATCATACAGA+AGG + chr3_4:78456148-78456167 None:intergenic 40.0%
GTTGAAGCAGAATATCGTAC+CGG - chr3_4:78456273-78456292 Msa0524910:intron 40.0%
!!! GGTTTTGTTGCTCATGTCTT+TGG - chr3_4:78456294-78456313 Msa0524910:intron 40.0%
TAACGATGAGCTAAAGGAAC+TGG + chr3_4:78456502-78456521 None:intergenic 40.0%
! TCCTTTAGCTCATCGTTACA+CGG - chr3_4:78456504-78456523 Msa0524910:intron 40.0%
!! CCTTTGGTTCTCCCATTATC+TGG + chr3_4:78450781-78450800 None:intergenic 45.0%
!! CCAGATAATGGGAGAACCAA+AGG - chr3_4:78450778-78450797 Msa0524910:three_prime_UTR 45.0%
ACCAAAGGACGAAACTTACG+AGG - chr3_4:78450793-78450812 Msa0524910:three_prime_UTR 45.0%
TCCTCGTAAGTTTCGTCCTT+TGG + chr3_4:78450797-78450816 None:intergenic 45.0%
! ACTTTAGCTCCGTTGGTATC+GGG + chr3_4:78450857-78450876 None:intergenic 45.0%
! GACTTTAGCTCCGTTGGTAT+CGG + chr3_4:78450858-78450877 None:intergenic 45.0%
ACCAACGGAGCTAAAGTCAA+CGG - chr3_4:78450860-78450879 Msa0524910:three_prime_UTR 45.0%
! TTTTATGGCAGGGGCTATGT+TGG - chr3_4:78451009-78451028 Msa0524910:intron 45.0%
TCTCAAACCAGAGCTTCTTC+GGG - chr3_4:78451062-78451081 Msa0524910:intron 45.0%
AAAGAATAGGGTAGCAGTGG+AGG - chr3_4:78451405-78451424 Msa0524910:intron 45.0%
AAGAATAGGGTAGCAGTGGA+GGG - chr3_4:78451406-78451425 Msa0524910:intron 45.0%
! AGCACCTCACATATAGTGGA+TGG - chr3_4:78451487-78451506 Msa0524910:intron 45.0%
ATCATAGGGCCTGTTTGGAT+TGG + chr3_4:78451788-78451807 None:intergenic 45.0%
AGAAAGGGAGTAAGGGGAAA+GGG + chr3_4:78451953-78451972 None:intergenic 45.0%
!! TACTTACCGTTGGTTCCTTC+GGG - chr3_4:78452235-78452254 Msa0524910:intron 45.0%
AGCAAAGAAAAAAGGCCCGA+AGG + chr3_4:78452253-78452272 None:intergenic 45.0%
TGCATACCTCAAGCAATCCT+CGG - chr3_4:78452294-78452313 Msa0524910:intron 45.0%
AGTCGAGAGAACAAAGACAG+CGG + chr3_4:78452361-78452380 None:intergenic 45.0%
! CACAAGAGAACTAGCTTACC+AGG - chr3_4:78452434-78452453 Msa0524910:intron 45.0%
CCAATGCCCCAATAAATACC+TGG + chr3_4:78452455-78452474 None:intergenic 45.0%
CCAGGTATTTATTGGGGCAT+TGG - chr3_4:78452452-78452471 Msa0524910:intron 45.0%
TACCTACTTACCCGATCTGA+AGG - chr3_4:78452570-78452589 Msa0524910:intron 45.0%
AACCTTCAGATCGGGTAAGT+AGG + chr3_4:78452575-78452594 None:intergenic 45.0%
AAGACAGCAACCTTCAGATC+GGG + chr3_4:78452583-78452602 None:intergenic 45.0%
! GGTTGCTGTCTTTTATGGTG+GGG - chr3_4:78452591-78452610 Msa0524910:intron 45.0%
GAGTGCCCTCAAATTGTTGT+TGG - chr3_4:78452649-78452668 Msa0524910:intron 45.0%
GGCGTTCCAACAACAATTTG+AGG + chr3_4:78452658-78452677 None:intergenic 45.0%
! CAAATTGTTGTTGGAACGCC+TGG - chr3_4:78452658-78452677 Msa0524910:intron 45.0%
GCCTGGAAGAATACTAGCAT+TGG - chr3_4:78452675-78452694 Msa0524910:intron 45.0%
GCCAATGCTAGTATTCTTCC+AGG + chr3_4:78452679-78452698 None:intergenic 45.0%
! GTTTTCAGCAACACTCAGCA+AGG - chr3_4:78452937-78452956 Msa0524910:intron 45.0%
TTAACAACCTGCTGGTGAGT+TGG - chr3_4:78453152-78453171 Msa0524910:CDS 45.0%
! CTGGATTGGAGTAGAAGATG+TGG - chr3_4:78453188-78453207 Msa0524910:CDS 45.0%
TAGTAATGCTCCTGACTGTG+GGG - chr3_4:78453221-78453240 Msa0524910:intron 45.0%
AAGTACATAACCCCACAGTC+AGG + chr3_4:78453234-78453253 None:intergenic 45.0%
CCAGCATGAACAACAAGAGA+CGG + chr3_4:78453261-78453280 None:intergenic 45.0%
!! CGTCTCTTGTTGTTCATGCT+GGG - chr3_4:78453259-78453278 Msa0524910:intron 45.0%
AAACACGTGGACAAGAACTG+TGG - chr3_4:78453490-78453509 Msa0524910:intron 45.0%
TGGACAAGAACTGTGGTTCA+AGG - chr3_4:78453497-78453516 Msa0524910:intron 45.0%
GGACAAGAACTGTGGTTCAA+GGG - chr3_4:78453498-78453517 Msa0524910:intron 45.0%
! GGATTCCATTAGCTTGAGGA+CGG - chr3_4:78453548-78453567 Msa0524910:intron 45.0%
GAAGCCAAGTTAACCCTTCA+TGG - chr3_4:78453633-78453652 Msa0524910:intron 45.0%
CAGTCCATGAAGGGTTAACT+TGG + chr3_4:78453640-78453659 None:intergenic 45.0%
CAAGTTAACCCTTCATGGAC+TGG - chr3_4:78453638-78453657 Msa0524910:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr3_4:78454242-78454261 Msa0524910:CDS 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr3_4:78454244-78454263 Msa0524910:CDS 45.0%
TTGGATTGAGGGTTTGGAAG+GGG + chr3_4:78454451-78454470 None:intergenic 45.0%
GTTTGGATTGAGGGTTTGGA+AGG + chr3_4:78454453-78454472 None:intergenic 45.0%
GTGTGTTTGGATTGAGGGTT+TGG + chr3_4:78454238-78454257 None:intergenic 45.0%
CTTAGGGTGTGTTTGGATTG+AGG + chr3_4:78454463-78454482 None:intergenic 45.0%
GGAGGTTCAGGAAACAAATG+CGG - chr3_4:78454619-78454638 Msa0524910:CDS 45.0%
GCGTTATAGAGGTTTCAAGG+AGG - chr3_4:78454823-78454842 Msa0524910:intron 45.0%
!! GCTACAGATTTGGTTGGTAG+AGG - chr3_4:78454866-78454885 Msa0524910:intron 45.0%
TGCAGACACTTACTTGCACA+GGG - chr3_4:78454940-78454959 Msa0524910:intron 45.0%
! GGTAGTCTGACTCTTTTGGA+GGG - chr3_4:78455031-78455050 Msa0524910:intron 45.0%
TGGAGGGATACTTTACAGGT+TGG - chr3_4:78455047-78455066 Msa0524910:intron 45.0%
TGGTTCCAAATCTTCCAGCT+CGG + chr3_4:78455073-78455092 None:intergenic 45.0%
! GCTGGAAGATTTGGAACCAA+AGG - chr3_4:78455074-78455093 Msa0524910:intron 45.0%
! GTGATTTGCAGGTTCAGTCA+AGG - chr3_4:78455211-78455230 Msa0524910:intron 45.0%
!! GTAGAGGTATCAATCTGCTC+AGG + chr3_4:78455261-78455280 None:intergenic 45.0%
!! TATTGCTTTGGGGCAACACT+TGG - chr3_4:78455994-78456013 Msa0524910:intron 45.0%
GTATGAGTACCCTCATCTAC+TGG - chr3_4:78456029-78456048 Msa0524910:intron 45.0%
ACCCTCATCTACTGGATTTG+TGG - chr3_4:78456037-78456056 Msa0524910:intron 45.0%
GCCACAAATCCAGTAGATGA+GGG + chr3_4:78456041-78456060 None:intergenic 45.0%
CTCATCTACTGGATTTGTGG+CGG - chr3_4:78456040-78456059 Msa0524910:intron 45.0%
GATTTGACCATGCTGATGTC+GGG - chr3_4:78456091-78456110 Msa0524910:CDS 45.0%
CGATCAACGAAAAGTAGCCT+AGG + chr3_4:78456117-78456136 None:intergenic 45.0%
ACTGGTAGCATAGACATGGA+AGG + chr3_4:78456484-78456503 None:intergenic 45.0%
AGGAACTGGTAGCATAGACA+TGG + chr3_4:78456488-78456507 None:intergenic 45.0%
TCCGTGTAACGATGAGCTAA+AGG + chr3_4:78456508-78456527 None:intergenic 45.0%
!! AAATCATAAATATAAAAATT+AGG + chr3_4:78455564-78455583 None:intergenic 5.0%
TGTTCACTCACTTCACCCAC+CGG - chr3_4:78450493-78450512 Msa0524910:three_prime_UTR 50.0%
TGATACGATACGATGCCGGT+GGG + chr3_4:78450511-78450530 None:intergenic 50.0%
ATGATACGATACGATGCCGG+TGG + chr3_4:78450512-78450531 None:intergenic 50.0%
GCGATGATACGATACGATGC+CGG + chr3_4:78450515-78450534 None:intergenic 50.0%
GGCATCGTATCGTATCATCG+CGG - chr3_4:78450514-78450533 Msa0524910:three_prime_UTR 50.0%
ATCGTATCGTATCATCGCGG+AGG - chr3_4:78450517-78450536 Msa0524910:three_prime_UTR 50.0%
TAGGGTTTCGAGAGACTGCA+AGG + chr3_4:78450584-78450603 None:intergenic 50.0%
GGAAGAGCTTCTCGATTACG+AGG - chr3_4:78450814-78450833 Msa0524910:three_prime_UTR 50.0%
AGAGCTTCTCGATTACGAGG+AGG - chr3_4:78450817-78450836 Msa0524910:three_prime_UTR 50.0%
GACAAAGCTCCCGATACCAA+CGG - chr3_4:78450845-78450864 Msa0524910:three_prime_UTR 50.0%
!! ACCGTTGACTTTAGCTCCGT+TGG + chr3_4:78450864-78450883 None:intergenic 50.0%
TAAGGGGAAAGGGAGCGAAA+AGG + chr3_4:78451943-78451962 None:intergenic 50.0%
GAGAAAGGGAGTAAGGGGAA+AGG + chr3_4:78451954-78451973 None:intergenic 50.0%
AAAAGGCCCGAAGGAACCAA+CGG + chr3_4:78452244-78452263 None:intergenic 50.0%
ACCTCAAGCAATCCTCGGAA+TGG - chr3_4:78452299-78452318 Msa0524910:intron 50.0%
TCCATTCCGAGGATTGCTTG+AGG + chr3_4:78452303-78452322 None:intergenic 50.0%
CAGCAGATTGATCCTGTTCC+AGG - chr3_4:78452384-78452403 Msa0524910:intron 50.0%
ACAAGTGCAGAAACTTGGCC+TGG + chr3_4:78452405-78452424 None:intergenic 50.0%
CATACTTCCCACATTCCCTG+AGG - chr3_4:78453039-78453058 Msa0524910:CDS 50.0%
!! CCGTCTCTTGTTGTTCATGC+TGG - chr3_4:78453258-78453277 Msa0524910:intron 50.0%
GTGCAAGTATCCAATGTCCG+TGG - chr3_4:78453430-78453449 Msa0524910:intron 50.0%
TTTGTCACCGACAAGTGCCA+CGG + chr3_4:78453450-78453469 None:intergenic 50.0%
CTGCAAGGAGACAAAACACG+TGG - chr3_4:78453477-78453496 Msa0524910:intron 50.0%
TACCTGCACCAGTCCATGAA+GGG + chr3_4:78453649-78453668 None:intergenic 50.0%
TCACGGCAGACAAGAAGGTA+AGG + chr3_4:78453746-78453765 None:intergenic 50.0%
TGTTAGTAGAGCAGCTGAGC+TGG - chr3_4:78453864-78453883 Msa0524910:intron 50.0%
CTGGCATGTCCCAAGAAGAA+AGG - chr3_4:78453932-78453951 Msa0524910:intron 50.0%
TATGAGATGTCCGCAGATGC+TGG - chr3_4:78453962-78453981 Msa0524910:intron 50.0%
ATGAGATGTCCGCAGATGCT+GGG - chr3_4:78453963-78453982 Msa0524910:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG - chr3_4:78454248-78454267 Msa0524910:CDS 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG - chr3_4:78454249-78454268 Msa0524910:CDS 50.0%
TTGAGGGTTTGGAAGGGGAA+GGG + chr3_4:78454446-78454465 None:intergenic 50.0%
ATTGAGGGTTTGGAAGGGGA+AGG + chr3_4:78454447-78454466 None:intergenic 50.0%
CAGGAAACAAATGCGGCTGT+TGG - chr3_4:78454626-78454645 Msa0524910:CDS 50.0%
! GTTTCAAGGAGGGGCATACT+AGG - chr3_4:78454834-78454853 Msa0524910:intron 50.0%
CTGCAGACACTTACTTGCAC+AGG - chr3_4:78454939-78454958 Msa0524910:intron 50.0%
! GGGTAGTCTGACTCTTTTGG+AGG - chr3_4:78455030-78455049 Msa0524910:intron 50.0%
ACGAGAAAATCTGACCCGAG+AGG - chr3_4:78455840-78455859 Msa0524910:intron 50.0%
CTCGGATATTCTTGCCTCTC+GGG + chr3_4:78455857-78455876 None:intergenic 50.0%
CCTCGGATATTCTTGCCTCT+CGG + chr3_4:78455858-78455877 None:intergenic 50.0%
CGAGAGGCAAGAATATCCGA+GGG - chr3_4:78455856-78455875 Msa0524910:intron 50.0%
CACTATGATGGCACTGCACA+TGG + chr3_4:78455972-78455991 None:intergenic 50.0%
CATGTGCAGTGCCATCATAG+TGG - chr3_4:78455970-78455989 Msa0524910:intron 50.0%
CAACACTTGGTCCGTTTGGA+CGG - chr3_4:78456007-78456026 Msa0524910:intron 50.0%
GGGTACTCATACCGTCCAAA+CGG + chr3_4:78456021-78456040 None:intergenic 50.0%
CGCCACAAATCCAGTAGATG+AGG + chr3_4:78456042-78456061 None:intergenic 50.0%
CGGTGATGCTGTTGTTGAAC+TGG - chr3_4:78456224-78456243 Msa0524910:intron 50.0%
ACGATAGCCCGAAGAAGCTC+TGG + chr3_4:78451072-78451091 None:intergenic 55.0%
!! CTTCGGGCTATCGTCGATTC+CGG - chr3_4:78451078-78451097 Msa0524910:intron 55.0%
!! GGATGGACTACAGGCCTGTT+TGG - chr3_4:78451504-78451523 Msa0524910:intron 55.0%
GCAGAAACTTGGCCTGGAAC+AGG + chr3_4:78452399-78452418 None:intergenic 55.0%
! AACCTGCTGGTGAGTTGGAG+TGG - chr3_4:78453157-78453176 Msa0524910:CDS 55.0%
! ACCTGCTGGTGAGTTGGAGT+GGG - chr3_4:78453158-78453177 Msa0524910:CDS 55.0%
! TTGAAGAGGAGGGGTGTGTG+TGG - chr3_4:78453354-78453373 Msa0524910:intron 55.0%
! TGAAGAGGAGGGGTGTGTGT+GGG - chr3_4:78453355-78453374 Msa0524910:intron 55.0%
!! TGTGTGTGGGTGGGTTGGTT+GGG - chr3_4:78453368-78453387 Msa0524910:intron 55.0%
CCAATGTCCGTGGCACTTGT+CGG - chr3_4:78453440-78453459 Msa0524910:intron 55.0%
AGGGTCCGTCCTCAAGCTAA+TGG + chr3_4:78453556-78453575 None:intergenic 55.0%
!! AACCCTTCATGGACTGGTGC+AGG - chr3_4:78453644-78453663 Msa0524910:intron 55.0%
CTACCTGCACCAGTCCATGA+AGG + chr3_4:78453650-78453669 None:intergenic 55.0%
!! CTTCATGGACTGGTGCAGGT+AGG - chr3_4:78453648-78453667 Msa0524910:intron 55.0%
TGCTGTCACGGCAGACAAGA+AGG + chr3_4:78453751-78453770 None:intergenic 55.0%
! ACTTTACAGGTTGGCCGAGC+TGG - chr3_4:78455056-78455075 Msa0524910:intron 55.0%
GTTGGCCGAGCTGGAAGATT+TGG - chr3_4:78455065-78455084 Msa0524910:intron 55.0%
CCGAGAGGCAAGAATATCCG+AGG - chr3_4:78455855-78455874 Msa0524910:intron 55.0%
! CCTGCTGGTGAGTTGGAGTG+GGG - chr3_4:78453159-78453178 Msa0524910:CDS 60.0%
! CTGGTGAGTTGGAGTGGGGT+TGG - chr3_4:78453163-78453182 Msa0524910:CDS 60.0%
! AGTTGGAGTGGGGTTGGCAC+TGG - chr3_4:78453169-78453188 Msa0524910:CDS 60.0%
! GAGTGGGGTTGGCACTGGAT+TGG - chr3_4:78453174-78453193 Msa0524910:CDS 60.0%
!! GTGTGTGTGGGTGGGTTGGT+TGG - chr3_4:78453367-78453386 Msa0524910:intron 60.0%
CCGACAAGTGCCACGGACAT+TGG + chr3_4:78453443-78453462 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr3_4:78454252-78454271 Msa0524910:CDS 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr3_4:78454253-78454272 Msa0524910:CDS 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr3_4:78454254-78454273 Msa0524910:CDS 60.0%
GGTTTGGAAGGGGAAGGGAG+GGG + chr3_4:78454441-78454460 None:intergenic 60.0%
GGGTTTGGAAGGGGAAGGGA+GGG + chr3_4:78454442-78454461 None:intergenic 60.0%
AGGGTTTGGAAGGGGAAGGG+AGG + chr3_4:78454443-78454462 None:intergenic 60.0%
GGGGCAACACTTGGTCCGTT+TGG - chr3_4:78456003-78456022 Msa0524910:intron 60.0%
ACCATGCTGATGTCGGGCCT+AGG - chr3_4:78456097-78456116 Msa0524910:CDS 60.0%
CCCCACTCCAACTCACCAGC+AGG + chr3_4:78453162-78453181 None:intergenic 65.0%
! AGAGGAGGGGTGTGTGTGGG+TGG - chr3_4:78453358-78453377 Msa0524910:intron 65.0%
! GAGGAGGGGTGTGTGTGGGT+GGG - chr3_4:78453359-78453378 Msa0524910:intron 65.0%
! AGGGGTGTGTGTGGGTGGGT+TGG - chr3_4:78453363-78453382 Msa0524910:intron 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr3_4:78454257-78454276 Msa0524910:CDS 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG - chr3_4:78454258-78454277 Msa0524910:CDS 65.0%
TGGAAGGGGAAGGGAGGGGA+GGG + chr3_4:78454437-78454456 None:intergenic 65.0%
TTGGAAGGGGAAGGGAGGGG+AGG + chr3_4:78454438-78454457 None:intergenic 65.0%
GCCTAGGCCCGACATCAGCA+TGG + chr3_4:78456101-78456120 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78450419 78456558 78450419 ID=Msa0524910;Name=Msa0524910
chr3_4 mRNA 78450419 78456558 78450419 ID=Msa0524910-mRNA-1;Parent=Msa0524910;Name=Msa0524910-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.81|0.75|0.91|0.72|0.66|12|569|416
chr3_4 exon 78450419 78450998 78450419 ID=Msa0524910-mRNA-1:exon:23280;Parent=Msa0524910-mRNA-1
chr3_4 exon 78451692 78451755 78451692 ID=Msa0524910-mRNA-1:exon:23279;Parent=Msa0524910-mRNA-1
chr3_4 exon 78451829 78451912 78451829 ID=Msa0524910-mRNA-1:exon:23278;Parent=Msa0524910-mRNA-1
chr3_4 exon 78452016 78452160 78452016 ID=Msa0524910-mRNA-1:exon:23277;Parent=Msa0524910-mRNA-1
chr3_4 exon 78453024 78453208 78453024 ID=Msa0524910-mRNA-1:exon:23276;Parent=Msa0524910-mRNA-1
chr3_4 exon 78453312 78453368 78453312 ID=Msa0524910-mRNA-1:exon:23275;Parent=Msa0524910-mRNA-1
chr3_4 exon 78453983 78454101 78453983 ID=Msa0524910-mRNA-1:exon:23274;Parent=Msa0524910-mRNA-1
chr3_4 exon 78454202 78454433 78454202 ID=Msa0524910-mRNA-1:exon:23273;Parent=Msa0524910-mRNA-1
chr3_4 exon 78454522 78454683 78454522 ID=Msa0524910-mRNA-1:exon:23272;Parent=Msa0524910-mRNA-1
chr3_4 exon 78455888 78455957 78455888 ID=Msa0524910-mRNA-1:exon:23271;Parent=Msa0524910-mRNA-1
chr3_4 exon 78456080 78456195 78456080 ID=Msa0524910-mRNA-1:exon:23270;Parent=Msa0524910-mRNA-1
chr3_4 exon 78456553 78456558 78456553 ID=Msa0524910-mRNA-1:exon:23269;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78456553 78456558 78456553 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78456080 78456195 78456080 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78455888 78455957 78455888 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78454522 78454683 78454522 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78454202 78454433 78454202 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78453983 78454101 78453983 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78453312 78453368 78453312 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78453024 78453208 78453024 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78452016 78452160 78452016 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78451829 78451912 78451829 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78451692 78451755 78451692 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 CDS 78450988 78450998 78450988 ID=Msa0524910-mRNA-1:cds;Parent=Msa0524910-mRNA-1
chr3_4 three_prime_UTR 78450419 78450987 78450419 ID=Msa0524910-mRNA-1:three_prime_utr;Parent=Msa0524910-mRNA-1
Gene Sequence

>Msa0524910

ATGGCGATAATGGGAGAACCAAAGGACGAAACTTACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGAAGACAAAGCTCCCGATACCAACGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTCAAACCAGAGCTTCTTCGGGCTATCTGCATACCTCAAGCAATCCTCGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAGACCGCTGTCTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGTCACACAAGAGAACTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTTAGTACCTACTTACCCGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAATATCAAAGTTCACAAGGATCTATTGAAAAATGAGTGCCCTCAAATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCTAGGGAGAAGAATCTTTCATTGAAGAATGTTCGTCATTTCGTTTTAGATGAGTGTGATAAGATGCTTGAATCACTGGACATGAGGAAAGACGTTCAAGACATTTTCAAGTTGACTCCCCACGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAGTCTGCAAAAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAAGCCAAGTTAACCCTTCATGGACTGGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAAAACCGCAAGTTGAATGATCTTCTTGATGCCCTAGACTTCAACCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAGACTACTTATAGAGTGCAATTTTCCATCTATATGCATTCACTCTGGCATGTCCCAAGAAGAAAGGTTGAAGCGTTATAGAGGTTTCAAGGAGGGGCATACTAGGATTCTTGTAGCTACAGATTTGGTTGGTAGAGGGATTGACATTGAACGTGTCAATATTGTTATAAACTATGACATGCCTGATTCTGCAGACACTTACTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGAACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCTTCTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTCGAAATAGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCATCATAG
Protein sequence

>Msa0524910

MAIMGEPKDETYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAICIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALAREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEIDIKQLPEQIDTSTYMPS*