AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382600 MtrunA17_Chr4g0003441 86.682 428 40 3 4 416 63 488 0.0 729
Msa0382600 MtrunA17_Chr1g0149251 96.512 344 12 0 73 416 1 344 0.0 694
Msa0382600 MtrunA17_Chr3g0137901 99.444 180 1 0 237 416 1 180 3.44e-129 369
Msa0382600 MtrunA17_Chr3g0137891 100.000 163 0 0 73 235 1 163 4.42e-117 340
Msa0382600 MtrunA17_Chr2g0299681 39.452 365 211 7 45 408 54 409 2.14e-74 238
Msa0382600 MtrunA17_Chr2g0329931 39.452 365 211 7 45 408 54 409 8.16e-74 236
Msa0382600 MtrunA17_Chr4g0070981 38.904 365 213 7 45 408 54 409 2.08e-72 233
Msa0382600 MtrunA17_Chr7g0247191 36.388 371 224 7 44 413 162 521 1.22e-71 234
Msa0382600 MtrunA17_Chr7g0247221 34.442 421 248 8 8 413 107 514 3.28e-71 233
Msa0382600 MtrunA17_Chr7g0247181 36.388 371 224 7 44 413 152 511 3.85e-71 232
Msa0382600 MtrunA17_Chr8g0342861 38.356 365 215 7 45 408 54 409 5.65e-71 229
Msa0382600 MtrunA17_Chr2g0297261 35.792 366 223 8 45 408 47 402 7.79e-68 221
Msa0382600 MtrunA17_Chr3g0107851 34.104 346 208 7 50 380 132 472 3.29e-58 199
Msa0382600 MtrunA17_Chr2g0330401 31.978 369 229 8 34 385 85 448 3.06e-54 187
Msa0382600 MtrunA17_Chr7g0236841 34.268 321 204 6 65 382 39 355 6.43e-54 185
Msa0382600 MtrunA17_Chr6g0483491 34.268 321 204 6 65 382 39 355 9.58e-54 184
Msa0382600 MtrunA17_Chr1g0176041 35.714 350 202 7 56 385 174 520 3.01e-53 187
Msa0382600 MtrunA17_Chr3g0121351 36.103 349 193 8 56 380 165 507 5.14e-53 186
Msa0382600 MtrunA17_Chr4g0063551 35.429 350 200 7 56 382 160 506 2.55e-52 185
Msa0382600 MtrunA17_Chr4g0076491 32.979 376 208 8 45 390 300 661 5.60e-52 185
Msa0382600 MtrunA17_Chr7g0271121 34.132 334 201 7 62 384 133 458 1.20e-51 184
Msa0382600 MtrunA17_Chr1g0193491 31.672 341 215 9 62 391 141 474 1.43e-50 180
Msa0382600 MtrunA17_Chr6g0449741 32.713 376 207 9 45 390 262 621 7.41e-50 179
Msa0382600 MtrunA17_Chr2g0310581 32.184 348 223 8 58 398 75 416 1.15e-48 173
Msa0382600 MtrunA17_Chr2g0300291 32.571 350 219 10 57 396 162 504 8.43e-48 174
Msa0382600 MtrunA17_Chr3g0095031 31.358 405 240 13 24 406 73 461 1.86e-47 170
Msa0382600 MtrunA17_Chr3g0098121 32.571 350 218 11 57 396 173 514 1.93e-46 170
Msa0382600 MtrunA17_Chr6g0449911 29.771 393 249 10 34 404 154 541 2.57e-46 169
Msa0382600 MtrunA17_Chr5g0442191 31.830 377 206 14 62 412 108 459 8.17e-46 166
Msa0382600 MtrunA17_Chr2g0293631 32.362 343 214 10 48 382 512 844 9.12e-45 166
Msa0382600 MtrunA17_Chr1g0200181 30.458 371 232 8 34 382 134 500 4.31e-44 162
Msa0382600 MtrunA17_Chr7g0270131 30.448 335 219 8 57 382 253 582 6.65e-43 160
Msa0382600 MtrunA17_Chr7g0263771 32.194 351 220 10 50 395 151 488 1.43e-41 155
Msa0382600 MtrunA17_Chr2g0277821 30.655 336 218 7 57 382 525 855 1.69e-41 157
Msa0382600 MtrunA17_Chr4g0040761 31.322 348 222 12 43 383 30 367 6.77e-41 154
Msa0382600 MtrunA17_Chr1g0157691 29.380 371 236 8 34 382 136 502 9.39e-41 152
Msa0382600 MtrunA17_Chr1g0179761 27.805 410 234 11 48 407 78 475 3.33e-40 149
Msa0382600 MtrunA17_Chr3g0114081 28.696 345 221 5 61 381 41 384 2.20e-39 149
Msa0382600 MtrunA17_Chr5g0409981 30.946 349 204 8 57 382 123 457 4.15e-38 144
Msa0382600 MtrunA17_Chr8g0347161 29.412 357 226 10 45 382 115 464 4.18e-38 145
Msa0382600 MtrunA17_Chr8g0347171 29.692 357 225 10 45 382 173 522 6.13e-38 145
Msa0382600 MtrunA17_Chr8g0342851 30.612 343 206 8 64 405 1 312 3.01e-37 137
Msa0382600 MtrunA17_Chr8g0347151 29.972 357 224 9 45 382 214 563 3.28e-37 143
Msa0382600 MtrunA17_Chr3g0137881 98.387 62 1 0 4 65 1 62 3.02e-36 127
Msa0382600 MtrunA17_Chr7g0236831 27.252 444 241 15 45 415 176 610 1.15e-35 139
Msa0382600 MtrunA17_Chr2g0307471 29.305 331 220 8 61 381 116 442 1.81e-35 137
Msa0382600 MtrunA17_Chr2g0309551 26.434 401 236 6 58 401 131 529 6.31e-35 135
Msa0382600 MtrunA17_Chr6g0461751 30.294 340 212 9 58 382 162 491 7.86e-35 135
Msa0382600 MtrunA17_Chr6g0475251 30.473 338 203 11 61 378 128 453 1.39e-34 135
Msa0382600 MtrunA17_Chr5g0443991 28.150 373 238 12 24 381 70 427 1.92e-34 135
Msa0382600 MtrunA17_Chr8g0386451 30.267 337 213 8 65 382 317 650 3.42e-34 135
Msa0382600 MtrunA17_Chr1g0169331 28.894 398 240 14 47 409 6 395 1.23e-33 129
Msa0382600 MtrunA17_Chr4g0062301 28.701 331 223 9 61 381 122 449 4.29e-33 130
Msa0382600 MtrunA17_Chr4g0058591 26.301 346 226 8 13 341 177 510 7.82e-33 129
Msa0382600 MtrunA17_Chr4g0029191 27.078 421 213 17 58 394 67 477 5.11e-32 128
Msa0382600 MtrunA17_Chr1g0204391 28.653 349 211 10 61 378 69 410 9.16e-32 127
Msa0382600 MtrunA17_Chr2g0301281 26.128 421 217 17 58 394 64 474 9.57e-31 124
Msa0382600 MtrunA17_Chr4g0034411 28.097 331 215 11 65 381 105 426 1.19e-29 121
Msa0382600 MtrunA17_Chr6g0466611 27.195 353 218 12 58 382 164 505 4.54e-29 119
Msa0382600 MtrunA17_Chr5g0429221 27.019 322 224 7 66 382 33 348 1.37e-27 113
Msa0382600 MtrunA17_Chr4g0025141 31.429 210 128 5 213 407 15 223 7.53e-27 107
Msa0382600 MtrunA17_Chr3g0145781 29.006 362 215 10 55 381 151 505 1.48e-26 111
Msa0382600 MtrunA17_Chr1g0192021 24.747 396 229 11 57 395 47 430 3.46e-20 92.8
Msa0382600 MtrunA17_Chr4g0039471 33.714 175 110 4 58 229 245 416 4.14e-20 91.7
Msa0382600 MtrunA17_Chr1g0149261 90.000 40 4 0 25 64 22 61 4.93e-18 78.6
Msa0382600 MtrunA17_Chr4g0062321 29.167 192 132 4 158 346 43 233 2.85e-17 80.9
Msa0382600 MtrunA17_Chr4g0004301 24.934 377 209 12 74 382 71 441 7.83e-17 82.4
Msa0382600 MtrunA17_Chr1g0155201 29.004 231 142 8 156 382 12 224 7.98e-17 81.3
Msa0382600 MtrunA17_Chr5g0434301 24.668 377 210 12 74 382 71 441 3.77e-16 80.1
Msa0382600 MtrunA17_Chr8g0349951 36.434 129 78 4 58 184 32 158 1.12e-14 71.2
Msa0382600 MtrunA17_Chr4g0025101 35.000 100 51 1 312 397 90 189 2.00e-14 72.0
Msa0382600 MtrunA17_Chr4g0025131 28.182 220 125 8 6 197 4 218 4.96e-14 72.0
Msa0382600 MtrunA17_Chr8g0354761 22.455 334 241 7 60 381 32 359 4.09e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382600 AT5G11170.1 87.438 406 36 2 25 416 23 427 0.0 733
Msa0382600 AT5G11200.1 87.438 406 36 2 25 416 23 427 0.0 733
Msa0382600 AT5G11200.3 79.418 447 36 3 25 416 23 468 0.0 712
Msa0382600 AT5G11170.2 90.698 344 32 0 73 416 1 344 0.0 657
Msa0382600 AT5G11200.2 69.462 465 68 6 25 416 23 486 0.0 623
Msa0382600 AT4G00660.1 35.681 426 239 9 9 413 92 503 3.53e-74 240
Msa0382600 AT4G00660.2 35.681 426 239 9 9 413 92 503 3.53e-74 240
Msa0382600 AT2G45810.1 37.027 370 221 7 45 413 168 526 6.44e-74 240
Msa0382600 AT1G72730.1 36.740 411 234 9 2 408 22 410 2.84e-73 235
Msa0382600 AT3G61240.2 35.323 402 231 8 27 413 109 496 7.30e-73 237
Msa0382600 AT3G61240.1 35.323 402 231 8 27 413 109 496 7.30e-73 237
Msa0382600 AT3G13920.1 38.904 365 213 7 45 408 53 408 1.62e-72 233
Msa0382600 AT3G13920.4 38.830 376 214 8 43 408 34 403 2.60e-72 233
Msa0382600 AT3G13920.3 38.904 365 213 7 45 408 43 398 2.61e-72 233
Msa0382600 AT1G54270.1 38.356 365 215 7 45 408 53 408 1.88e-70 228
Msa0382600 AT1G54270.2 38.298 376 216 8 43 408 34 403 6.39e-70 226
Msa0382600 AT3G13920.2 40.413 339 193 6 45 382 53 383 8.17e-70 226
Msa0382600 AT3G13920.5 40.413 339 193 6 45 382 57 387 9.19e-70 226
Msa0382600 AT3G19760.1 35.519 366 224 8 45 408 49 404 5.38e-68 221
Msa0382600 AT1G51380.1 36.066 366 216 10 45 405 36 388 2.66e-65 214
Msa0382600 AT1G55150.1 33.333 372 220 10 34 385 89 452 5.76e-54 187
Msa0382600 AT1G55150.2 33.333 372 220 10 34 385 114 477 1.41e-53 186
Msa0382600 AT3G53110.1 30.946 391 231 11 48 404 90 475 2.46e-53 185
Msa0382600 AT5G60990.1 32.840 338 210 7 58 382 32 365 2.17e-51 179
Msa0382600 AT5G26742.3 32.537 335 209 6 61 384 36 364 2.35e-50 180
Msa0382600 AT5G63120.2 31.940 335 213 8 57 382 187 515 4.08e-50 178
Msa0382600 AT1G16280.1 33.043 345 218 8 57 394 80 418 4.58e-50 176
Msa0382600 AT5G26742.1 32.635 334 208 6 62 384 130 457 5.65e-50 180
Msa0382600 AT5G26742.2 32.635 334 208 6 62 384 130 457 5.70e-50 180
Msa0382600 AT2G33730.1 31.467 375 223 8 45 394 327 692 1.97e-49 179
Msa0382600 AT4G16630.1 32.222 360 230 10 57 407 189 543 3.14e-49 179
Msa0382600 AT3G58570.1 36.232 345 197 8 56 380 167 508 5.01e-49 176
Msa0382600 AT1G28180.1 33.236 343 211 8 65 397 3 337 1.18e-48 169
Msa0382600 AT3G58510.1 33.815 346 206 8 56 382 172 513 1.46e-46 169
Msa0382600 AT3G58510.3 33.815 346 206 8 56 382 172 513 1.46e-46 169
Msa0382600 AT3G58510.2 33.815 346 206 8 56 382 172 513 1.46e-46 169
Msa0382600 AT3G22330.1 31.638 354 204 10 56 382 111 453 1.52e-46 169
Msa0382600 AT3G01540.1 30.203 394 246 12 34 404 148 535 1.76e-46 169
Msa0382600 AT3G01540.4 30.203 394 246 12 34 404 148 535 2.01e-46 169
Msa0382600 AT3G01540.2 30.203 394 246 12 34 404 148 535 2.01e-46 169
Msa0382600 AT3G01540.3 30.203 394 246 12 34 404 148 535 2.01e-46 169
Msa0382600 AT3G22310.2 32.277 347 209 7 53 378 120 461 2.87e-46 168
Msa0382600 AT3G22310.1 32.277 347 209 7 53 378 120 461 3.46e-46 168
Msa0382600 AT5G14610.7 31.085 341 221 8 46 380 45 377 1.25e-45 165
Msa0382600 AT5G14610.3 31.085 341 221 8 46 380 45 377 1.25e-45 165
Msa0382600 AT2G42520.2 33.913 345 205 7 56 380 180 521 1.43e-45 167
Msa0382600 AT2G42520.1 33.913 345 205 7 56 380 180 521 1.43e-45 167
Msa0382600 AT2G42520.3 33.913 345 205 7 56 380 180 521 1.43e-45 167
Msa0382600 AT5G14610.6 32.456 342 215 10 46 380 176 508 1.97e-45 166
Msa0382600 AT5G14610.2 32.456 342 215 10 46 380 176 508 2.34e-45 166
Msa0382600 AT5G14610.5 32.456 342 215 10 46 380 184 516 3.22e-45 166
Msa0382600 AT5G14610.1 32.456 342 215 10 46 380 244 576 6.34e-45 166
Msa0382600 AT2G47330.1 31.940 335 214 8 57 382 250 579 1.82e-44 165
Msa0382600 AT1G20920.2 30.000 370 233 9 33 382 180 543 5.54e-44 164
Msa0382600 AT1G31970.1 33.038 339 211 7 57 382 136 471 1.31e-43 160
Msa0382600 AT1G20920.4 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0382600 AT1G20920.6 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0382600 AT1G20920.3 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0382600 AT1G20920.7 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0382600 AT1G20920.5 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0382600 AT1G20920.1 30.000 370 233 9 33 382 518 881 3.24e-43 162
Msa0382600 AT3G06480.1 29.231 390 256 8 34 408 425 809 6.08e-43 161
Msa0382600 AT5G51280.1 29.912 341 222 7 55 382 166 502 4.47e-42 156
Msa0382600 AT4G33370.1 31.672 341 216 7 55 382 117 453 1.53e-41 154
Msa0382600 AT1G71370.1 29.762 336 217 7 61 381 42 373 9.74e-40 149
Msa0382600 AT1G77030.1 30.816 331 218 10 58 382 51 376 1.08e-38 149
Msa0382600 AT5G63630.1 28.869 336 219 6 65 382 84 417 2.52e-37 142
Msa0382600 AT5G05450.1 27.826 345 221 7 61 381 42 382 7.59e-37 142
Msa0382600 AT3G09720.2 30.159 378 236 14 42 408 150 510 1.13e-36 140
Msa0382600 AT3G09720.1 30.159 378 236 14 42 408 150 510 1.13e-36 140
Msa0382600 AT5G63630.2 28.869 336 219 6 65 382 278 611 1.74e-36 142
Msa0382600 AT3G02065.1 30.240 334 207 9 65 382 3 326 1.97e-36 137
Msa0382600 AT3G09620.1 30.270 370 203 12 33 382 385 719 3.22e-36 141
Msa0382600 AT3G09620.2 30.270 370 203 12 33 382 386 720 3.25e-36 141
Msa0382600 AT5G62190.1 32.407 324 197 10 72 380 133 449 7.74e-36 139
Msa0382600 AT3G02065.3 29.577 355 220 11 44 382 123 463 1.14e-35 137
Msa0382600 AT3G02065.2 29.577 355 220 11 44 382 123 463 1.14e-35 137
Msa0382600 AT5G08620.1 28.090 356 232 7 45 382 94 443 1.17e-35 138
Msa0382600 AT5G08610.1 28.010 382 241 7 33 382 366 745 2.66e-35 139
Msa0382600 AT3G18600.1 29.664 327 216 10 61 378 115 436 6.53e-35 136
Msa0382600 AT5G65900.1 30.678 339 198 13 61 378 180 502 1.96e-34 135
Msa0382600 AT1G12770.2 25.521 384 229 6 52 379 127 509 2.94e-34 134
Msa0382600 AT1G12770.1 25.521 384 229 6 52 379 127 509 2.94e-34 134
Msa0382600 AT1G51380.2 35.246 244 147 7 45 286 36 270 2.43e-33 126
Msa0382600 AT5G63120.1 29.932 294 191 8 57 341 187 474 3.77e-33 130
Msa0382600 AT5G63120.3 30.000 300 193 9 57 347 187 478 4.19e-33 130
Msa0382600 AT5G63120.4 30.000 300 193 9 57 347 187 478 4.19e-33 130
Msa0382600 AT5G63120.5 30.000 300 193 9 57 347 187 478 4.19e-33 130
Msa0382600 AT3G16840.2 29.358 436 230 11 53 416 210 639 4.85e-33 132
Msa0382600 AT3G16840.1 29.358 436 230 11 53 416 209 638 5.07e-33 132
Msa0382600 AT5G54910.1 28.070 342 219 11 61 386 97 427 3.18e-31 126
Msa0382600 AT1G63250.1 28.242 347 228 7 55 382 348 692 3.72e-31 126
Msa0382600 AT5G14610.4 30.476 315 201 11 46 353 184 487 2.13e-30 122
Msa0382600 AT3G06480.2 27.711 332 221 7 34 350 425 752 7.61e-29 119
Msa0382600 AT2G07750.1 28.144 334 211 9 72 382 412 739 2.09e-28 118
Msa0382600 AT2G40700.1 26.895 409 206 14 58 381 54 454 4.68e-28 117
Msa0382600 AT1G51380.4 33.641 217 134 6 45 259 36 244 8.63e-25 103
Msa0382600 AT1G51380.3 33.641 217 134 6 45 259 36 244 1.01e-24 103
Msa0382600 AT4G15850.1 26.954 371 208 10 74 382 74 443 3.93e-23 102
Msa0382600 AT5G19210.2 24.625 333 218 7 66 370 107 434 7.22e-22 97.8
Msa0382600 AT4G34910.1 25.549 364 219 9 57 370 68 429 2.23e-21 97.1
Msa0382600 AT3G06980.1 24.862 362 225 9 57 381 396 747 4.41e-21 96.3
Msa0382600 AT1G71280.2 28.378 296 169 12 61 343 43 308 1.51e-18 86.7
Msa0382600 AT1G71280.1 28.378 296 169 12 61 343 43 308 4.68e-18 86.3
Msa0382600 AT5G19210.1 24.231 260 168 6 135 370 23 277 1.06e-13 72.0
Msa0382600 AT5G19210.3 24.231 260 168 6 135 370 23 277 1.06e-13 72.0

Find 123 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTCTTGTATACTTTAAT+AGG 0.207564 3_1:+85255248 Msa0382600:three_prime_UTR
CAGCAGATTGATCCTGTTCC+AGG 0.258533 3_1:+85251381 Msa0382600:CDS
TTCTCAAACCAGAGCTTCTT+CGG 0.267756 3_1:+85250022 Msa0382600:CDS
TATCAAATCATTCATGATTT+CGG 0.280084 3_1:+85255354 Msa0382600:three_prime_UTR
ATAAAACAAACCTTTCTTCT+TGG 0.281030 3_1:-85252939 None:intergenic
ATCATAGTGGATATTGCTTT+GGG 0.302530 3_1:+85254979 Msa0382600:exon
GTTGGCCGAGCTGGAAGATT+TGG 0.303568 3_1:+85254062 Msa0382600:CDS
TCCTCGTAAGTTTCGTCCTT+TGG 0.307307 3_1:-85249755 None:intergenic
CATCATAGTGGATATTGCTT+TGG 0.320279 3_1:+85254978 Msa0382600:exon
TAAAACAAACCTTTCTTCTT+GGG 0.342819 3_1:-85252938 None:intergenic
GACTTTAGCTCCGTTGGTAT+CGG 0.343036 3_1:-85249816 None:intergenic
TTTGTTCTGAAGTGTACTTT+TGG 0.361228 3_1:+85255390 Msa0382600:three_prime_UTR
GAAGCCAAGTTAACCCTTCA+TGG 0.374844 3_1:+85252630 Msa0382600:CDS
GTAATTTGTCAAGCTAAATC+TGG 0.375081 3_1:+85251321 Msa0382600:CDS
GATTCTTGTAGCTACAGATT+TGG 0.387454 3_1:+85253853 Msa0382600:CDS
GGGGCAACACTTGGTCCGTT+TGG 0.390379 3_1:+85254999 Msa0382600:three_prime_UTR
AAATGTAATTGCAAGGCCTT+TGG 0.392224 3_1:-85254087 None:intergenic
TATGTTGGAATTCACAGTTC+AGG 0.397914 3_1:+85249985 Msa0382600:CDS
TCTCAAACCAGAGCTTCTTC+GGG 0.401740 3_1:+85250023 Msa0382600:CDS
ACTTTACAGGTTGGCCGAGC+TGG 0.402167 3_1:+85254053 Msa0382600:intron
GCCAATGCTAGTATTCTTCC+AGG 0.402281 3_1:-85251673 None:intergenic
TGTTAGTAGAGCAGCTGAGC+TGG 0.405799 3_1:+85252861 Msa0382600:CDS
CAAATTGTTGTTGGAACGCC+TGG 0.413036 3_1:+85251655 Msa0382600:CDS
CGGTGATGCTGTTGTTGAAC+TGG 0.416246 3_1:+85255221 Msa0382600:three_prime_UTR
ACCATCTATTGCCAGATAAT+GGG 0.420328 3_1:+85249728 Msa0382600:intron
GTTTCAAGGAGGGGCATACT+AGG 0.426560 3_1:+85253831 Msa0382600:CDS
TTGATAGAAATGTGAGGAAA+AGG 0.428212 3_1:-85255337 None:intergenic
CCAGAGTGAATGCATATAGA+TGG 0.428290 3_1:-85252910 None:intergenic
GTGTTAAACATTCTGTATGA+TGG 0.430791 3_1:+85255134 Msa0382600:three_prime_UTR
TAACAACTTGGTTGAAGTCT+AGG 0.431244 3_1:-85252825 None:intergenic
GCAGAAACTTGGCCTGGAAC+AGG 0.433044 3_1:-85251393 None:intergenic
AAGTAAGTGTCTGCAGAATC+AGG 0.433468 3_1:-85253929 None:intergenic
ACTTTAGCTCCGTTGGTATC+GGG 0.446549 3_1:-85249815 None:intergenic
TATTGCTTTGGGGCAACACT+TGG 0.446693 3_1:+85254990 Msa0382600:three_prime_UTR
ACCCTCATCTACTGGATTTG+TGG 0.452586 3_1:+85255033 Msa0382600:three_prime_UTR
ACCGTTGACTTTAGCTCCGT+TGG 0.454754 3_1:-85249822 None:intergenic
TGATAAGATGCTTGAATCAC+TGG 0.464819 3_1:+85251750 Msa0382600:CDS
TGTAGGTTGAAGCGTTATAG+AGG 0.469448 3_1:+85253809 Msa0382600:intron
GCGTTCCAACAACAATTTGA+GGG 0.474065 3_1:-85251651 None:intergenic
CACAAGAGAACTAGCTTACC+AGG 0.475324 3_1:+85251431 Msa0382600:CDS
TAACGATGAGCTAAAGGAAC+TGG 0.484575 3_1:-85255496 None:intergenic
GAGTGCCCTCAAATTGTTGT+TGG 0.484980 3_1:+85251646 Msa0382600:CDS
GTATGAGTACCCTCATCTAC+TGG 0.485739 3_1:+85255025 Msa0382600:three_prime_UTR
GAAGCGTTATAGAGGTTTCA+AGG 0.487117 3_1:+85253817 Msa0382600:CDS
TGTCAAGCTAAATCTGGAAT+GGG 0.490633 3_1:+85251327 Msa0382600:CDS
CAGTCCATGAAGGGTTAACT+TGG 0.491161 3_1:-85252634 None:intergenic
TTGTCAAGCTAAATCTGGAA+TGG 0.491537 3_1:+85251326 Msa0382600:CDS
CTGCAGACACTTACTTGCAC+AGG 0.493193 3_1:+85253936 Msa0382600:CDS
ACGATAGCCCGAAGAAGCTC+TGG 0.493356 3_1:-85250030 None:intergenic
CAAGAAGATCATTCAACTTG+CGG 0.494607 3_1:-85252798 None:intergenic
GCTACAGATTTGGTTGGTAG+AGG 0.500164 3_1:+85253863 Msa0382600:CDS
ACAGAACAAGTGCAGAAACT+TGG 0.502577 3_1:-85251404 None:intergenic
ACCATGCTGATGTCGGGCCT+AGG 0.510799 3_1:+85255093 Msa0382600:three_prime_UTR
TCCGTGTAACGATGAGCTAA+AGG 0.511745 3_1:-85255502 None:intergenic
GATTTGACCATGCTGATGTC+GGG 0.511765 3_1:+85255087 Msa0382600:three_prime_UTR
CATCATAACTTGCTTATCGT+GGG 0.512480 3_1:-85251912 None:intergenic
AAGACAGCAACCTTCAGATC+GGG 0.512540 3_1:-85251577 None:intergenic
ACAAGTGCAGAAACTTGGCC+TGG 0.514338 3_1:-85251399 None:intergenic
CAACACTTGGTCCGTTTGGA+CGG 0.514563 3_1:+85255003 Msa0382600:three_prime_UTR
GCACTACATCAAATTGAAAG+AGG 0.517823 3_1:+85252765 Msa0382600:intron
AACCCTTCATGGACTGGTGC+AGG 0.517866 3_1:+85252641 Msa0382600:CDS
CAAAGCAATATCCACTATGA+TGG 0.521600 3_1:-85254977 None:intergenic
CTTGTAGCTACAGATTTGGT+TGG 0.522187 3_1:+85253857 Msa0382600:CDS
AAATCATTCATGATTTCGGA+TGG 0.522299 3_1:+85255358 Msa0382600:three_prime_UTR
GAAGAATACTAGCATTGGCT+AGG 0.526509 3_1:+85251677 Msa0382600:CDS
GTGATTTGCAGGTTCAGTCA+AGG 0.528181 3_1:+85254208 Msa0382600:intron
AACAAAGTACAACACAACTA+AGG 0.529373 3_1:-85255168 None:intergenic
CTACAGATTTGGTTGGTAGA+GGG 0.530961 3_1:+85253864 Msa0382600:CDS
CCATCTATATGCATTCACTC+TGG 0.537546 3_1:+85252910 Msa0382600:CDS
CAAGTTAACCCTTCATGGAC+TGG 0.538235 3_1:+85252635 Msa0382600:CDS
TGGTTCCAAATCTTCCAGCT+CGG 0.539236 3_1:-85254067 None:intergenic
AAAGACATGAGCAACAAAAC+CGG 0.540312 3_1:-85255289 None:intergenic
CTGGCATGTCCCAAGAAGAA+AGG 0.541548 3_1:+85252929 Msa0382600:CDS
ACCTCAAGCAATCCTCGGAA+TGG 0.545341 3_1:+85251296 Msa0382600:CDS
GTAGAGGTATCAATCTGCTC+AGG 0.546365 3_1:-85254255 None:intergenic
GGCGTTCCAACAACAATTTG+AGG 0.547645 3_1:-85251652 None:intergenic
AACAACTTGGTTGAAGTCTA+GGG 0.548156 3_1:-85252824 None:intergenic
GTTATAGAGGTTTCAAGGAG+GGG 0.549962 3_1:+85253822 Msa0382600:CDS
GCCTGGAAGAATACTAGCAT+TGG 0.549976 3_1:+85251672 Msa0382600:CDS
TCATCAACATAAATTTCCAT+AGG 0.552344 3_1:-85252606 None:intergenic
CGCCACAAATCCAGTAGATG+AGG 0.556237 3_1:-85255035 None:intergenic
TGATTTGACCATGCTGATGT+CGG 0.556376 3_1:+85255086 Msa0382600:three_prime_UTR
AGATATGCCATGAGTTTGAG+AGG 0.557167 3_1:+85251539 Msa0382600:intron
GGGTACTCATACCGTCCAAA+CGG 0.561945 3_1:-85255014 None:intergenic
ACATCATAACTTGCTTATCG+TGG 0.563979 3_1:-85251913 None:intergenic
TCCTTTAGCTCATCGTTACA+CGG 0.564276 3_1:+85255501 Msa0382600:three_prime_UTR
AAAGTGCTTACTGTAGGTAG+AGG 0.564836 3_1:-85254271 None:intergenic
TACTAAACCTCTCAAACTCA+TGG 0.569538 3_1:-85251546 None:intergenic
TGCATACCTCAAGCAATCCT+CGG 0.569749 3_1:+85251291 Msa0382600:CDS
AAAGACAGCAACCTTCAGAT+CGG 0.576558 3_1:-85251578 None:intergenic
CGTTATAGAGGTTTCAAGGA+GGG 0.577094 3_1:+85253821 Msa0382600:CDS
CTACCTGCACCAGTCCATGA+AGG 0.577194 3_1:-85252644 None:intergenic
ATGAAACAAATGTAATTGCA+AGG 0.583398 3_1:-85254094 None:intergenic
TACCTACTTACCCGATCTGA+AGG 0.587362 3_1:+85251567 Msa0382600:CDS
GATCAACGGAAAAGTAGCCT+AGG 0.594351 3_1:-85255110 None:intergenic
GCTGGAAGATTTGGAACCAA+AGG 0.594660 3_1:+85254071 Msa0382600:CDS
CCAGATAATGGGAGAACCAA+AGG 0.598291 3_1:+85249739 Msa0382600:intron
GTTGAAACAGAATATCGTAC+CGG 0.606839 3_1:+85255270 Msa0382600:three_prime_UTR
GACAAATTACATCCATTCCG+AGG 0.613516 3_1:-85251308 None:intergenic
CTCATCTACTGGATTTGTGG+CGG 0.619714 3_1:+85255036 Msa0382600:three_prime_UTR
TGCAGACACTTACTTGCACA+GGG 0.621788 3_1:+85253937 Msa0382600:CDS
AGGAACTGGTAGCATAGACA+TGG 0.626266 3_1:-85255482 None:intergenic
TACCTGCACCAGTCCATGAA+GGG 0.627063 3_1:-85252643 None:intergenic
AACCTTCAGATCGGGTAAGT+AGG 0.628828 3_1:-85251569 None:intergenic
AAGAATACTAGCATTGGCTA+GGG 0.631042 3_1:+85251678 Msa0382600:CDS
GAATGTTTAACACCGATCAA+CGG 0.635548 3_1:-85255124 None:intergenic
CATGTGCAGTGCCATCATAG+TGG 0.639227 3_1:+85254966 Msa0382600:intron
ATCATAACTTGCTTATCGTG+GGG 0.649459 3_1:-85251911 None:intergenic
GCCACAAATCCAGTAGATGA+GGG 0.650591 3_1:-85255034 None:intergenic
GCCTAGGCCCGACATCAGCA+TGG 0.650908 3_1:-85255094 None:intergenic
TCCATTCCGAGGATTGCTTG+AGG 0.655490 3_1:-85251297 None:intergenic
GACAAAGCTCCCGATACCAA+CGG 0.662798 3_1:+85249806 Msa0382600:CDS
GGTCAATATCAAAGTTCACA+AGG 0.667495 3_1:+85251609 Msa0382600:CDS
ACCAAAGGACGAAACTTACG+AGG 0.668863 3_1:+85249754 Msa0382600:CDS
ACTGGTAGCATAGACATGGA+AGG 0.671581 3_1:-85255478 None:intergenic
ACCAACGGAGCTAAAGTCAA+CGG 0.673145 3_1:+85249821 Msa0382600:CDS
GGAAGAGCTTCTCGATTACG+AGG 0.681000 3_1:+85249775 Msa0382600:CDS
TCATAGTGGATATTGCTTTG+GGG 0.681035 3_1:+85254980 Msa0382600:exon
GATAAGATGCTTGAATCACT+GGG 0.702068 3_1:+85251751 Msa0382600:CDS
AGAGCTTCTCGATTACGAGG+AGG 0.710082 3_1:+85249778 Msa0382600:CDS
AATGATTTGATAGAAATGTG+AGG 0.712968 3_1:-85255343 None:intergenic
GCGTTATAGAGGTTTCAAGG+AGG 0.725932 3_1:+85253820 Msa0382600:CDS
AGTCGAGAGAACAAAGACAG+CGG 0.750658 3_1:-85251355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAACATAATATTATAA+AGG - chr3_1:85250891-85250910 None:intergenic 10.0%
!! ACATTAAACAAAAATTATAA+AGG - chr3_1:85251062-85251081 None:intergenic 10.0%
!!! AATCTTATTATTTTATTTGT+AGG + chr3_1:85253792-85253811 Msa0382600:intron 10.0%
!!! ATTTATTTTCAATTTTTCTT+AGG + chr3_1:85254361-85254380 Msa0382600:intron 10.0%
!! ACATCATAAATATAAAAATT+AGG - chr3_1:85254561-85254580 None:intergenic 10.0%
!!! AATGACAAAAAATTGATAAT+TGG - chr3_1:85249436-85249455 None:intergenic 15.0%
!!! TCTAAATCTCTATTAATTTT+AGG + chr3_1:85249661-85249680 Msa0382600:intron 15.0%
!!! CTAAATCTCTATTAATTTTA+GGG + chr3_1:85249662-85249681 Msa0382600:intron 15.0%
!! TGAAATTTCTTAAAAGAATA+GGG + chr3_1:85250390-85250409 Msa0382600:intron 15.0%
!! AATATTATGTTGAATTACTA+TGG + chr3_1:85250895-85250914 Msa0382600:intron 15.0%
!!! TTTTTTTTTTAACACTTAAC+AGG + chr3_1:85251124-85251143 Msa0382600:intron 15.0%
!!! TACTTTTTTCAAACATTTTT+GGG + chr3_1:85253038-85253057 Msa0382600:intron 15.0%
!! ATAAATGAAAGATCAAAATA+AGG - chr3_1:85253983-85254002 None:intergenic 15.0%
!!! TATTTACTTTCACTAAATTT+TGG + chr3_1:85254000-85254019 Msa0382600:intron 15.0%
!!! TTTTCTCGTTAAATTTTTTT+TGG - chr3_1:85254825-85254844 None:intergenic 15.0%
!!! AAAAATTGATAATTGGCTAA+TGG - chr3_1:85249429-85249448 None:intergenic 20.0%
!! TTTGTAATAAGTAAAATCAG+TGG - chr3_1:85249884-85249903 None:intergenic 20.0%
!!! TGTATCTTTGTTCTTTTTTA+TGG + chr3_1:85249955-85249974 Msa0382600:intron 20.0%
!! TAATATCCTTAAATTCTCAT+TGG + chr3_1:85250239-85250258 Msa0382600:intron 20.0%
!! TAATATTAACAGATGTGATT+TGG + chr3_1:85250339-85250358 Msa0382600:intron 20.0%
!! AATATTAACAGATGTGATTT+GGG + chr3_1:85250340-85250359 Msa0382600:intron 20.0%
!! GTGAAATTTCTTAAAAGAAT+AGG + chr3_1:85250389-85250408 Msa0382600:intron 20.0%
!!! GAGGGATTTAATTTTAAAAT+TGG + chr3_1:85250421-85250440 Msa0382600:intron 20.0%
!!! GGATTTAATTTTAAAATTGG+AGG + chr3_1:85250424-85250443 Msa0382600:intron 20.0%
!!! ATGCTTTAAGTTGTTTTTAT+AGG + chr3_1:85250630-85250649 Msa0382600:intron 20.0%
!! AAGGAAAAAATAAAGAGAAA+GGG - chr3_1:85250965-85250984 None:intergenic 20.0%
!! AAAGGAAAAAATAAAGAGAA+AGG - chr3_1:85250966-85250985 None:intergenic 20.0%
!! TATATACAAAAATTTCGCAA+AGG - chr3_1:85250984-85251003 None:intergenic 20.0%
!!! TTTGCGAAATTTTTGTATAT+AGG + chr3_1:85250983-85251002 Msa0382600:intron 20.0%
!!! GTATTTTCATATAAATGACA+AGG + chr3_1:85251088-85251107 Msa0382600:intron 20.0%
!! TAATATTCAAACTAAACAGA+AGG - chr3_1:85251792-85251811 None:intergenic 20.0%
!!! GTACTTTTTTCAAACATTTT+TGG + chr3_1:85253037-85253056 Msa0382600:intron 20.0%
!!! ACTTTTTTCAAACATTTTTG+GGG + chr3_1:85253039-85253058 Msa0382600:intron 20.0%
!! TTAGTGTTAATACATTTAAG+TGG - chr3_1:85253084-85253103 None:intergenic 20.0%
!!! TTTTTAACTTTGAATGACAA+AGG + chr3_1:85253595-85253614 Msa0382600:intron 20.0%
!! AATAGAATAACAGTAAAACT+GGG - chr3_1:85253733-85253752 None:intergenic 20.0%
!! TAATAGAATAACAGTAAAAC+TGG - chr3_1:85253734-85253753 None:intergenic 20.0%
!!! TTTCACTAAATTTTGGTTTA+GGG + chr3_1:85254007-85254026 Msa0382600:intron 20.0%
!! AACATAATTAGAAATGCTAA+TGG - chr3_1:85254184-85254203 None:intergenic 20.0%
!!! TTTTATCAATGCATTACAAA+AGG + chr3_1:85254487-85254506 Msa0382600:intron 20.0%
!! TTTATATTTATGATGTGAAC+TGG + chr3_1:85254565-85254584 Msa0382600:intron 20.0%
!!! TTTTTATGTTTCATGATGTT+AGG + chr3_1:85254637-85254656 Msa0382600:intron 20.0%
!!! CATATGTTCTACATTTTTTA+GGG - chr3_1:85254792-85254811 None:intergenic 20.0%
!!! ACATATGTTCTACATTTTTT+AGG - chr3_1:85254793-85254812 None:intergenic 20.0%
!! TATCAAATCATTCATGATTT+CGG + chr3_1:85255354-85255373 Msa0382600:three_prime_UTR 20.0%
!! TAATTGGCTAATGGATATAA+AGG - chr3_1:85249420-85249439 None:intergenic 25.0%
! TGTTAGACGAAAAAGAATTT+GGG - chr3_1:85249519-85249538 None:intergenic 25.0%
! TTGTTAGACGAAAAAGAATT+TGG - chr3_1:85249520-85249539 None:intergenic 25.0%
!!! TCTTTGTTCTTTTTTATGGT+AGG + chr3_1:85249959-85249978 Msa0382600:intron 25.0%
!!! CTTTGTTCTTTTTTATGGTA+GGG + chr3_1:85249960-85249979 Msa0382600:intron 25.0%
!!! TTTGTTCTTTTTTATGGTAG+GGG + chr3_1:85249961-85249980 Msa0382600:intron 25.0%
! ATCATTCAAAAATTTGTCGA+AGG + chr3_1:85250453-85250472 Msa0382600:intron 25.0%
! ATAAGCTTATTTATCCAAAC+AGG - chr3_1:85250518-85250537 None:intergenic 25.0%
!!! GTTGTTTTTATAGGCTATAT+TGG + chr3_1:85250639-85250658 Msa0382600:intron 25.0%
! AATGAACGAATGAAAAAAAC+AGG - chr3_1:85250868-85250887 None:intergenic 25.0%
! TAAACGAATGAAAAAACAGT+CGG - chr3_1:85251037-85251056 None:intergenic 25.0%
!!! TTTAGTTTGAATATTACCAC+TGG + chr3_1:85251796-85251815 Msa0382600:intron 25.0%
! TAAGAACAATAAAAACCACA+TGG - chr3_1:85251836-85251855 None:intergenic 25.0%
! ATCAATCTTTACTTCTGATA+GGG + chr3_1:85252087-85252106 Msa0382600:intron 25.0%
! TGTTAAGTAAAATTGGACAA+AGG - chr3_1:85252135-85252154 None:intergenic 25.0%
! TTTGACAGTAAATCATGTTA+GGG - chr3_1:85252572-85252591 None:intergenic 25.0%
! ATTTGACAGTAAATCATGTT+AGG - chr3_1:85252573-85252592 None:intergenic 25.0%
! TCATCAACATAAATTTCCAT+AGG - chr3_1:85252609-85252628 None:intergenic 25.0%
! TATAAGCAAACAACTTGAAA+AGG - chr3_1:85252671-85252690 None:intergenic 25.0%
!!! ACAGATAAGACATTTTAAGA+GGG - chr3_1:85252717-85252736 None:intergenic 25.0%
!! TACAGATAAGACATTTTAAG+AGG - chr3_1:85252718-85252737 None:intergenic 25.0%
!! TTTTCACAAAGATAACAACT+TGG - chr3_1:85252840-85252859 None:intergenic 25.0%
! TAAAACAAACCTTTCTTCTT+GGG - chr3_1:85252941-85252960 None:intergenic 25.0%
! ATAAAACAAACCTTTCTTCT+TGG - chr3_1:85252942-85252961 None:intergenic 25.0%
!! TTCATGTTTTGCAATTCTAT+TGG + chr3_1:85252994-85253013 Msa0382600:intron 25.0%
!! TGTGAGCTTTTTGAATATAA+GGG + chr3_1:85253213-85253232 Msa0382600:intron 25.0%
!! AGCATTGAATAAATCTCTTA+GGG - chr3_1:85253476-85253495 None:intergenic 25.0%
!! TAGCATTGAATAAATCTCTT+AGG - chr3_1:85253477-85253496 None:intergenic 25.0%
! TTGTTCTTTCAAATCAAAAG+TGG - chr3_1:85253558-85253577 None:intergenic 25.0%
! GAATTGTCAATAGACAATTA+AGG - chr3_1:85253657-85253676 None:intergenic 25.0%
! ATAGAATAACAGTAAAACTG+GGG - chr3_1:85253732-85253751 None:intergenic 25.0%
!!! CTTTCACTAAATTTTGGTTT+AGG + chr3_1:85254006-85254025 Msa0382600:intron 25.0%
! ATGAAACAAATGTAATTGCA+AGG - chr3_1:85254097-85254116 None:intergenic 25.0%
! ATTTGTGCTTTCCTAAAATT+TGG + chr3_1:85254514-85254533 Msa0382600:intron 25.0%
! AAATGTAGAACATATGTTTG+TGG + chr3_1:85254796-85254815 Msa0382600:intron 25.0%
! AATATTAATCTCTTCTGACT+TGG + chr3_1:85254936-85254955 Msa0382600:intron 25.0%
! ACACTCTTGTATACTTTAAT+AGG + chr3_1:85255248-85255267 Msa0382600:three_prime_UTR 25.0%
! AATGATTTGATAGAAATGTG+AGG - chr3_1:85255346-85255365 None:intergenic 25.0%
!!! GCTCAAAATCTGTTTTTTTT+CGG + chr3_1:85255416-85255435 Msa0382600:three_prime_UTR 25.0%
!!! CTCAAAATCTGTTTTTTTTC+GGG + chr3_1:85255417-85255436 Msa0382600:three_prime_UTR 25.0%
!!! TATTTTCAGATTGATTTTGC+AGG + chr3_1:85255444-85255463 Msa0382600:three_prime_UTR 25.0%
TTAGACGAAAAAGAATTTGG+GGG - chr3_1:85249517-85249536 None:intergenic 30.0%
GTTAGACGAAAAAGAATTTG+GGG - chr3_1:85249518-85249537 None:intergenic 30.0%
!!! ATTCTAGGGTTTTAGAAGAA+GGG - chr3_1:85249631-85249650 None:intergenic 30.0%
!!! TATTCTAGGGTTTTAGAAGA+AGG - chr3_1:85249632-85249651 None:intergenic 30.0%
!! TAGAGATAGAGAGTATTCTA+GGG - chr3_1:85249645-85249664 None:intergenic 30.0%
!! TTAGAGATAGAGAGTATTCT+AGG - chr3_1:85249646-85249665 None:intergenic 30.0%
ACAAGAAACAACTTACTTCT+TGG - chr3_1:85249855-85249874 None:intergenic 30.0%
ACTACATAGAAGAAACATCA+TGG - chr3_1:85249932-85249951 None:intergenic 30.0%
! GCTGTACTTTTCTACAATTT+TGG + chr3_1:85250125-85250144 Msa0382600:intron 30.0%
TTATGATGATTCCTGTAGTA+TGG + chr3_1:85250199-85250218 Msa0382600:intron 30.0%
AACAAATTACTCCATACTAC+AGG - chr3_1:85250213-85250232 None:intergenic 30.0%
TATCCTTAAATTCTCATTGG+AGG + chr3_1:85250242-85250261 Msa0382600:intron 30.0%
AAACCTCCAATGAGAATTTA+AGG - chr3_1:85250248-85250267 None:intergenic 30.0%
! TTGGAGGTTTTTGATAAATG+TGG + chr3_1:85250258-85250277 Msa0382600:intron 30.0%
! TGGAGGTTTTTGATAAATGT+GGG + chr3_1:85250259-85250278 Msa0382600:intron 30.0%
! GTTTTTATAGGCTATATTGG+AGG + chr3_1:85250642-85250661 Msa0382600:intron 30.0%
GTGAACAAGACTTAATCATA+GGG - chr3_1:85250799-85250818 None:intergenic 30.0%
AGTGAACAAGACTTAATCAT+AGG - chr3_1:85250800-85250819 None:intergenic 30.0%
AATAAAGAGAAAGGGAGTAA+GGG - chr3_1:85250957-85250976 None:intergenic 30.0%
AAATAAAGAGAAAGGGAGTA+AGG - chr3_1:85250958-85250977 None:intergenic 30.0%
! GCGAAATTTTTGTATATAGG+TGG + chr3_1:85250986-85251005 Msa0382600:intron 30.0%
AAACGAATGAAAAAACAGTC+GGG - chr3_1:85251036-85251055 None:intergenic 30.0%
!! CAAATTAAAAGCGTCAGAAA+TGG + chr3_1:85251202-85251221 Msa0382600:intron 30.0%
!!! TGGTTTATTTTACTTACCGT+TGG + chr3_1:85251222-85251241 Msa0382600:intron 30.0%
GATGATGAAGCAAAGAAAAA+AGG - chr3_1:85251258-85251277 None:intergenic 30.0%
! GTAATTTGTCAAGCTAAATC+TGG + chr3_1:85251321-85251340 Msa0382600:CDS 30.0%
TAGCTTACCAGGTATTTATT+GGG + chr3_1:85251442-85251461 Msa0382600:intron 30.0%
!!! ATGTTTTTTTTGCAGACATG+AGG + chr3_1:85251858-85251877 Msa0382600:intron 30.0%
!!! GCATAAATTTTTTGCAGACT+GGG - chr3_1:85251967-85251986 None:intergenic 30.0%
!!! TGCATAAATTTTTTGCAGAC+TGG - chr3_1:85251968-85251987 None:intergenic 30.0%
ATGCAAGATGTAATTTCTCA+TGG + chr3_1:85251983-85252002 Msa0382600:intron 30.0%
TCAAACAACTAAAAACCTCA+GGG - chr3_1:85252054-85252073 None:intergenic 30.0%
TTCAAACAACTAAAAACCTC+AGG - chr3_1:85252055-85252074 None:intergenic 30.0%
!! TTTTAGTTGTTTGAATGCTG+TGG + chr3_1:85252060-85252079 Msa0382600:intron 30.0%
CATCAATCTTTACTTCTGAT+AGG + chr3_1:85252086-85252105 Msa0382600:intron 30.0%
AGCAGGTTGTTAAGTAAAAT+TGG - chr3_1:85252142-85252161 None:intergenic 30.0%
! AATTTTACTTAACAACCTGC+TGG + chr3_1:85252141-85252160 Msa0382600:intron 30.0%
! TCTCTAATATTTGCTAGTGT+TGG + chr3_1:85252290-85252309 Msa0382600:intron 30.0%
! CTCTAATATTTGCTAGTGTT+GGG + chr3_1:85252291-85252310 Msa0382600:intron 30.0%
!!! ATGGGTTTTTTTCATTGTGT+TGG + chr3_1:85252315-85252334 Msa0382600:intron 30.0%
!!! TGGGTTTTTTTCATTGTGTT+GGG + chr3_1:85252316-85252335 Msa0382600:intron 30.0%
!!! TTGTTCCTGTCATTTTTCTT+TGG + chr3_1:85252404-85252423 Msa0382600:intron 30.0%
!!! TGTTCCTGTCATTTTTCTTT+GGG + chr3_1:85252405-85252424 Msa0382600:intron 30.0%
ATAAATTTCCATAGGCTGAA+AGG - chr3_1:85252601-85252620 None:intergenic 30.0%
!! CAGATAAGACATTTTAAGAG+GGG - chr3_1:85252716-85252735 None:intergenic 30.0%
GTTAATACATTTAAGTGGCA+TGG - chr3_1:85253079-85253098 None:intergenic 30.0%
TAATCTGTAGCTCACAATAA+TGG + chr3_1:85253101-85253120 Msa0382600:intron 30.0%
! GTGTGAGCTTTTTGAATATA+AGG + chr3_1:85253212-85253231 Msa0382600:intron 30.0%
! TTTGAATATAAGGGTGTGTT+TGG + chr3_1:85253222-85253241 Msa0382600:intron 30.0%
ATGCTATTATGACATTACTG+AGG + chr3_1:85253491-85253510 Msa0382600:intron 30.0%
TTAACTTTGAATGACAAAGG+AGG + chr3_1:85253598-85253617 Msa0382600:intron 30.0%
GTTATTCTATTAGAGTGAAG+TGG + chr3_1:85253742-85253761 Msa0382600:intron 30.0%
TTGATGTTCTCAACAATGTA+AGG + chr3_1:85254129-85254148 Msa0382600:intron 30.0%
TGATGTTCTCAACAATGTAA+GGG + chr3_1:85254130-85254149 Msa0382600:intron 30.0%
!! TTATGTTTGTTGTGATTTGC+AGG + chr3_1:85254197-85254216 Msa0382600:intron 30.0%
!! AATGAAAAAGTGCTTACTGT+AGG - chr3_1:85254280-85254299 None:intergenic 30.0%
!! TCCTGTATTGATTTGTTTGT+AGG + chr3_1:85254313-85254332 Msa0382600:intron 30.0%
TCCTACAAACAAATCAATAC+AGG - chr3_1:85254317-85254336 None:intergenic 30.0%
!! GTATTGATTTGTTTGTAGGA+CGG + chr3_1:85254317-85254336 Msa0382600:intron 30.0%
CGGAATTGGAATTATAAGTT+AGG + chr3_1:85254337-85254356 Msa0382600:intron 30.0%
GTATTCCATTCGATTTCTAA+TGG + chr3_1:85254425-85254444 Msa0382600:intron 30.0%
ATTGACCATTAGAAATCGAA+TGG - chr3_1:85254433-85254452 None:intergenic 30.0%
AATCGTGCAAAATTAGCAAA+TGG - chr3_1:85254464-85254483 None:intergenic 30.0%
CAGCTAAGAAAATGAGTATT+TGG - chr3_1:85254613-85254632 None:intergenic 30.0%
TTTCTTTGTACTTGAGAGTT+AGG + chr3_1:85254672-85254691 Msa0382600:intron 30.0%
ATCAAACCAATTATGCAACT+TGG - chr3_1:85254879-85254898 None:intergenic 30.0%
!! ATCATAGTGGATATTGCTTT+GGG + chr3_1:85254979-85254998 Msa0382600:exon 30.0%
GTGTTAAACATTCTGTATGA+TGG + chr3_1:85255134-85255153 Msa0382600:three_prime_UTR 30.0%
AACAAAGTACAACACAACTA+AGG - chr3_1:85255171-85255190 None:intergenic 30.0%
!! TTTACGATCATGTTTTGAGT+TGG + chr3_1:85255191-85255210 Msa0382600:three_prime_UTR 30.0%
!!! TGTTTTGAGTTGGTATTTGA+CGG + chr3_1:85255201-85255220 Msa0382600:three_prime_UTR 30.0%
!!! TCATGTCTTTGGTGTTTTTA+CGG + chr3_1:85255302-85255321 Msa0382600:three_prime_UTR 30.0%
TTGATAGAAATGTGAGGAAA+AGG - chr3_1:85255340-85255359 None:intergenic 30.0%
AAATCATTCATGATTTCGGA+TGG + chr3_1:85255358-85255377 Msa0382600:three_prime_UTR 30.0%
!!! TTTGTTCTGAAGTGTACTTT+TGG + chr3_1:85255390-85255409 Msa0382600:three_prime_UTR 30.0%
GAATTGAGGAATTAGGGTTA+GGG - chr3_1:85249567-85249586 None:intergenic 35.0%
TGAATTGAGGAATTAGGGTT+AGG - chr3_1:85249568-85249587 None:intergenic 35.0%
GGTTGTGAATTGAGGAATTA+GGG - chr3_1:85249573-85249592 None:intergenic 35.0%
AGGTTGTGAATTGAGGAATT+AGG - chr3_1:85249574-85249593 None:intergenic 35.0%
GAAATGAAAGAGTGAAAGGA+AGG - chr3_1:85249594-85249613 None:intergenic 35.0%
ACCATCTATTGCCAGATAAT+GGG + chr3_1:85249728-85249747 Msa0382600:intron 35.0%
TATGTTGGAATTCACAGTTC+AGG + chr3_1:85249985-85250004 Msa0382600:CDS 35.0%
TTCAGAAGGATGTTCAAATC+CGG - chr3_1:85250061-85250080 None:intergenic 35.0%
ATGGAAAATTTGCCTTCAGA+AGG - chr3_1:85250075-85250094 None:intergenic 35.0%
! ATGTGATTTGGGTTTGAAGA+TGG + chr3_1:85250351-85250370 Msa0382600:intron 35.0%
TTAAAAGAATAGGGTAGCAG+TGG + chr3_1:85250399-85250418 Msa0382600:intron 35.0%
! CTATATGTGAGGTGCTAATT+TGG - chr3_1:85250480-85250499 None:intergenic 35.0%
AATTAGCACCTCACATATAG+TGG + chr3_1:85250480-85250499 Msa0382600:intron 35.0%
!! GTCTTGTTCACTCTCATTTT+AGG + chr3_1:85250808-85250827 Msa0382600:intron 35.0%
ATAAAGAGAAAGGGAGTAAG+GGG - chr3_1:85250956-85250975 None:intergenic 35.0%
CATCTATCACAATACTGTTC+TGG + chr3_1:85251152-85251171 Msa0382600:intron 35.0%
TTGTCAAGCTAAATCTGGAA+TGG + chr3_1:85251326-85251345 Msa0382600:CDS 35.0%
! TGTCAAGCTAAATCTGGAAT+GGG + chr3_1:85251327-85251346 Msa0382600:CDS 35.0%
CTAGCTTACCAGGTATTTAT+TGG + chr3_1:85251441-85251460 Msa0382600:intron 35.0%
AGCTTACCAGGTATTTATTG+GGG + chr3_1:85251443-85251462 Msa0382600:intron 35.0%
ATGGCATATCTGAAAGGAAA+AGG - chr3_1:85251530-85251549 None:intergenic 35.0%
AAACTCATGGCATATCTGAA+AGG - chr3_1:85251536-85251555 None:intergenic 35.0%
TACTAAACCTCTCAAACTCA+TGG - chr3_1:85251549-85251568 None:intergenic 35.0%
GGTCAATATCAAAGTTCACA+AGG + chr3_1:85251609-85251628 Msa0382600:CDS 35.0%
!! AAGAATACTAGCATTGGCTA+GGG + chr3_1:85251678-85251697 Msa0382600:CDS 35.0%
TGATAAGATGCTTGAATCAC+TGG + chr3_1:85251750-85251769 Msa0382600:CDS 35.0%
GATAAGATGCTTGAATCACT+GGG + chr3_1:85251751-85251770 Msa0382600:CDS 35.0%
!!! GTCTTCTCTTATTTTCCATG+TGG + chr3_1:85251818-85251837 Msa0382600:intron 35.0%
!! ATCATAACTTGCTTATCGTG+GGG - chr3_1:85251914-85251933 None:intergenic 35.0%
!! CATCATAACTTGCTTATCGT+GGG - chr3_1:85251915-85251934 None:intergenic 35.0%
!! ACATCATAACTTGCTTATCG+TGG - chr3_1:85251916-85251935 None:intergenic 35.0%
!!! TAAATTTTTTGCAGACTGGG+CGG - chr3_1:85251964-85251983 None:intergenic 35.0%
! ATATTTGCTAGTGTTGGGTA+TGG + chr3_1:85252296-85252315 Msa0382600:intron 35.0%
! TATTTGCTAGTGTTGGGTAT+GGG + chr3_1:85252297-85252316 Msa0382600:intron 35.0%
!!! CACTTTTTCTTTGAAGAGGA+GGG + chr3_1:85252341-85252360 Msa0382600:intron 35.0%
!! ACTTTTTCTTTGAAGAGGAG+GGG + chr3_1:85252342-85252361 Msa0382600:intron 35.0%
!!! TTGGTTGGGTTGAGATATTT+TGG + chr3_1:85252379-85252398 Msa0382600:intron 35.0%
!!! TGGTTGGGTTGAGATATTTT+GGG + chr3_1:85252380-85252399 Msa0382600:intron 35.0%
GTGACAAAAAAGTTTCTGCA+AGG + chr3_1:85252459-85252478 Msa0382600:intron 35.0%
ATCCATCATTCATTTCGTTG+TGG + chr3_1:85252524-85252543 Msa0382600:intron 35.0%
ATCCACAACGAAATGAATGA+TGG - chr3_1:85252529-85252548 None:intergenic 35.0%
! AATTTGTTCCTTTCAGCCTA+TGG + chr3_1:85252590-85252609 Msa0382600:intron 35.0%
AATTTGATGTAGTGCTGTCA+CGG - chr3_1:85252760-85252779 None:intergenic 35.0%
GCACTACATCAAATTGAAAG+AGG + chr3_1:85252765-85252784 Msa0382600:intron 35.0%
CAAGAAGATCATTCAACTTG+CGG - chr3_1:85252801-85252820 None:intergenic 35.0%
AACAACTTGGTTGAAGTCTA+GGG - chr3_1:85252827-85252846 None:intergenic 35.0%
TAACAACTTGGTTGAAGTCT+AGG - chr3_1:85252828-85252847 None:intergenic 35.0%
!! ACATTTTTGGGGATTTTGTG+TGG + chr3_1:85253050-85253069 Msa0382600:intron 35.0%
! GTAAATTCTACACCTCCTTT+TGG - chr3_1:85253129-85253148 None:intergenic 35.0%
TAAATCTCTTAGGGTGTGTT+TGG - chr3_1:85253467-85253486 None:intergenic 35.0%
ATGACATTACTGAGGAATGA+TGG + chr3_1:85253499-85253518 Msa0382600:intron 35.0%
TATTGACAATTCTGTTGCAG+TGG + chr3_1:85253665-85253684 Msa0382600:intron 35.0%
ATTGACAATTCTGTTGCAGT+GGG + chr3_1:85253666-85253685 Msa0382600:intron 35.0%
GATTCTTGTAGCTACAGATT+TGG + chr3_1:85253853-85253872 Msa0382600:CDS 35.0%
AAATGTAATTGCAAGGCCTT+TGG - chr3_1:85254090-85254109 None:intergenic 35.0%
ATTTGTTTGTAGGACGGAAT+TGG + chr3_1:85254323-85254342 Msa0382600:intron 35.0%
! GAGACACTCAACCAAATTTT+AGG - chr3_1:85254528-85254547 None:intergenic 35.0%
CAAAGCAATATCCACTATGA+TGG - chr3_1:85254980-85254999 None:intergenic 35.0%
!! CATCATAGTGGATATTGCTT+TGG + chr3_1:85254978-85254997 Msa0382600:exon 35.0%
!! TCATAGTGGATATTGCTTTG+GGG + chr3_1:85254980-85254999 Msa0382600:exon 35.0%
GAATGTTTAACACCGATCAA+CGG - chr3_1:85255127-85255146 None:intergenic 35.0%
GTTGAAACAGAATATCGTAC+CGG + chr3_1:85255270-85255289 Msa0382600:three_prime_UTR 35.0%
AAAGACATGAGCAACAAAAC+CGG - chr3_1:85255292-85255311 None:intergenic 35.0%
!! TTTCAGATTGATTTTGCAGG+TGG + chr3_1:85255447-85255466 Msa0382600:three_prime_UTR 35.0%
GAAAGGAAGGTTGTGAATTG+AGG - chr3_1:85249581-85249600 None:intergenic 40.0%
CTGCGAAATGAAAGAGTGAA+AGG - chr3_1:85249598-85249617 None:intergenic 40.0%
CTTTCACTCTTTCATTTCGC+AGG + chr3_1:85249596-85249615 Msa0382600:intron 40.0%
CACCATCTATTGCCAGATAA+TGG + chr3_1:85249727-85249746 Msa0382600:intron 40.0%
TCCCATTATCTGGCAATAGA+TGG - chr3_1:85249732-85249751 None:intergenic 40.0%
! TTTTATGGTAGGGGCTATGT+TGG + chr3_1:85249970-85249989 Msa0382600:intron 40.0%
TTCTCAAACCAGAGCTTCTT+CGG + chr3_1:85250022-85250041 Msa0382600:CDS 40.0%
GGATTTGAACATCCTTCTGA+AGG + chr3_1:85250060-85250079 Msa0382600:intron 40.0%
TAGTCCATCCACTATATGTG+AGG - chr3_1:85250491-85250510 None:intergenic 40.0%
!! ACATATAGTGGATGGACTAC+AGG + chr3_1:85250492-85250511 Msa0382600:intron 40.0%
TCAGATAAGCCAATCCAAAC+AGG + chr3_1:85250773-85250792 Msa0382600:intron 40.0%
ACTTAATCATAGGGCCTGTT+TGG - chr3_1:85250790-85250809 None:intergenic 40.0%
TCTGGAGAACTAACATGCTT+TGG + chr3_1:85251170-85251189 Msa0382600:intron 40.0%
!! TTACTTACCGTTGGTTCCTT+CGG + chr3_1:85251231-85251250 Msa0382600:intron 40.0%
GACAAATTACATCCATTCCG+AGG - chr3_1:85251311-85251330 None:intergenic 40.0%
ACAGAACAAGTGCAGAAACT+TGG - chr3_1:85251407-85251426 None:intergenic 40.0%
AGATATGCCATGAGTTTGAG+AGG + chr3_1:85251539-85251558 Msa0382600:intron 40.0%
AAAGACAGCAACCTTCAGAT+CGG - chr3_1:85251581-85251600 None:intergenic 40.0%
! CTGAAGGTTGCTGTCTTTTA+TGG + chr3_1:85251583-85251602 Msa0382600:CDS 40.0%
! AAGGTTGCTGTCTTTTATGG+TGG + chr3_1:85251586-85251605 Msa0382600:CDS 40.0%
! AGGTTGCTGTCTTTTATGGT+GGG + chr3_1:85251587-85251606 Msa0382600:CDS 40.0%
GCGTTCCAACAACAATTTGA+GGG - chr3_1:85251654-85251673 None:intergenic 40.0%
!! GAAGAATACTAGCATTGGCT+AGG + chr3_1:85251677-85251696 Msa0382600:CDS 40.0%
GGAAAATAAGAGAAGACCAG+TGG - chr3_1:85251815-85251834 None:intergenic 40.0%
CTAAAAACCTCAGGGAATGT+GGG - chr3_1:85252046-85252065 None:intergenic 40.0%
ACTAAAAACCTCAGGGAATG+TGG - chr3_1:85252047-85252066 None:intergenic 40.0%
ATTGGAGTAGAAGATGTGGA+TGG + chr3_1:85252189-85252208 Msa0382600:intron 40.0%
TTGGAGTAGAAGATGTGGAT+GGG + chr3_1:85252190-85252209 Msa0382600:intron 40.0%
TTTAGTAATGCTCCTGACTG+TGG + chr3_1:85252216-85252235 Msa0382600:intron 40.0%
TTAGTAATGCTCCTGACTGT+GGG + chr3_1:85252217-85252236 Msa0382600:intron 40.0%
!!! GGTGCACTTTTTCTTTGAAG+AGG + chr3_1:85252337-85252356 Msa0382600:intron 40.0%
!!! GCACTTTTTCTTTGAAGAGG+AGG + chr3_1:85252340-85252359 Msa0382600:intron 40.0%
TGCACCCAAAGAAAAATGAC+AGG - chr3_1:85252412-85252431 None:intergenic 40.0%
! TTGTGGATTCCATTAGCTTG+AGG + chr3_1:85252541-85252560 Msa0382600:intron 40.0%
CCAGAGTGAATGCATATAGA+TGG - chr3_1:85252913-85252932 None:intergenic 40.0%
CCATCTATATGCATTCACTC+TGG + chr3_1:85252910-85252929 Msa0382600:CDS 40.0%
AAAATGATTCCCAGCATCTG+CGG - chr3_1:85252972-85252991 None:intergenic 40.0%
! CTCACAATAATGGTGCCAAA+AGG + chr3_1:85253111-85253130 Msa0382600:intron 40.0%
! ACAATAATGGTGCCAAAAGG+AGG + chr3_1:85253114-85253133 Msa0382600:intron 40.0%
TCTGAAAACGCTTAGACAAG+AGG - chr3_1:85253151-85253170 None:intergenic 40.0%
! ATAAGGGTGTGTTTGGATTG+AGG + chr3_1:85253229-85253248 Msa0382600:intron 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG + chr3_1:85253230-85253249 Msa0382600:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr3_1:85253236-85253255 Msa0382600:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr3_1:85253240-85253259 Msa0382600:intron 40.0%
TTTGGATTGAGGGTTTGGAA+GGG - chr3_1:85253449-85253468 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr3_1:85253459-85253478 None:intergenic 40.0%
! CATTACTGAGGAATGATGGA+TGG + chr3_1:85253503-85253522 Msa0382600:intron 40.0%
TTGAATGACAAAGGAGGTTC+AGG + chr3_1:85253604-85253623 Msa0382600:intron 40.0%
! TGTAGGTTGAAGCGTTATAG+AGG + chr3_1:85253809-85253828 Msa0382600:intron 40.0%
! GAAGCGTTATAGAGGTTTCA+AGG + chr3_1:85253817-85253836 Msa0382600:CDS 40.0%
CGTTATAGAGGTTTCAAGGA+GGG + chr3_1:85253821-85253840 Msa0382600:CDS 40.0%
GTTATAGAGGTTTCAAGGAG+GGG + chr3_1:85253822-85253841 Msa0382600:CDS 40.0%
! CTTGTAGCTACAGATTTGGT+TGG + chr3_1:85253857-85253876 Msa0382600:CDS 40.0%
!! CTACAGATTTGGTTGGTAGA+GGG + chr3_1:85253864-85253883 Msa0382600:CDS 40.0%
AAGTAAGTGTCTGCAGAATC+AGG - chr3_1:85253932-85253951 None:intergenic 40.0%
! TTAGGGTAGTCTGACTCTTT+TGG + chr3_1:85254024-85254043 Msa0382600:intron 40.0%
!! CTTTTGGAGGGATACTTTAC+AGG + chr3_1:85254040-85254059 Msa0382600:intron 40.0%
! AAAGTGCTTACTGTAGGTAG+AGG - chr3_1:85254274-85254293 None:intergenic 40.0%
AATTATGCAACTTGGTCCCT+CGG - chr3_1:85254871-85254890 None:intergenic 40.0%
!!! GATTTGTGGCGGAGATTTTT+TGG + chr3_1:85255047-85255066 Msa0382600:three_prime_UTR 40.0%
!!! TGGCGGAGATTTTTTGGAAA+AGG + chr3_1:85255053-85255072 Msa0382600:three_prime_UTR 40.0%
!!! GGCGGAGATTTTTTGGAAAA+GGG + chr3_1:85255054-85255073 Msa0382600:three_prime_UTR 40.0%
TGATTTGACCATGCTGATGT+CGG + chr3_1:85255086-85255105 Msa0382600:three_prime_UTR 40.0%
!!! TAGGCTACTTTTCCGTTGAT+CGG + chr3_1:85255112-85255131 Msa0382600:three_prime_UTR 40.0%
!!! GGTTTTGTTGCTCATGTCTT+TGG + chr3_1:85255291-85255310 Msa0382600:three_prime_UTR 40.0%
TAACGATGAGCTAAAGGAAC+TGG - chr3_1:85255499-85255518 None:intergenic 40.0%
! TCCTTTAGCTCATCGTTACA+CGG + chr3_1:85255501-85255520 Msa0382600:three_prime_UTR 40.0%
!! CCTTTGGTTCTCCCATTATC+TGG - chr3_1:85249742-85249761 None:intergenic 45.0%
!! CCAGATAATGGGAGAACCAA+AGG + chr3_1:85249739-85249758 Msa0382600:intron 45.0%
ACCAAAGGACGAAACTTACG+AGG + chr3_1:85249754-85249773 Msa0382600:CDS 45.0%
TCCTCGTAAGTTTCGTCCTT+TGG - chr3_1:85249758-85249777 None:intergenic 45.0%
! ACTTTAGCTCCGTTGGTATC+GGG - chr3_1:85249818-85249837 None:intergenic 45.0%
! GACTTTAGCTCCGTTGGTAT+CGG - chr3_1:85249819-85249838 None:intergenic 45.0%
ACCAACGGAGCTAAAGTCAA+CGG + chr3_1:85249821-85249840 Msa0382600:CDS 45.0%
TCTCAAACCAGAGCTTCTTC+GGG + chr3_1:85250023-85250042 Msa0382600:CDS 45.0%
AAAGAATAGGGTAGCAGTGG+AGG + chr3_1:85250402-85250421 Msa0382600:intron 45.0%
AAGAATAGGGTAGCAGTGGA+GGG + chr3_1:85250403-85250422 Msa0382600:intron 45.0%
! AGCACCTCACATATAGTGGA+TGG + chr3_1:85250484-85250503 Msa0382600:intron 45.0%
ATCATAGGGCCTGTTTGGAT+TGG - chr3_1:85250785-85250804 None:intergenic 45.0%
AGAAAGGGAGTAAGGGGAAA+GGG - chr3_1:85250950-85250969 None:intergenic 45.0%
!! TACTTACCGTTGGTTCCTTC+GGG + chr3_1:85251232-85251251 Msa0382600:intron 45.0%
AGCAAAGAAAAAAGGCCCGA+AGG - chr3_1:85251250-85251269 None:intergenic 45.0%
TGCATACCTCAAGCAATCCT+CGG + chr3_1:85251291-85251310 Msa0382600:CDS 45.0%
AGTCGAGAGAACAAAGACAG+CGG - chr3_1:85251358-85251377 None:intergenic 45.0%
! CACAAGAGAACTAGCTTACC+AGG + chr3_1:85251431-85251450 Msa0382600:CDS 45.0%
CCAATGCCCCAATAAATACC+TGG - chr3_1:85251452-85251471 None:intergenic 45.0%
CCAGGTATTTATTGGGGCAT+TGG + chr3_1:85251449-85251468 Msa0382600:intron 45.0%
TACCTACTTACCCGATCTGA+AGG + chr3_1:85251567-85251586 Msa0382600:CDS 45.0%
AACCTTCAGATCGGGTAAGT+AGG - chr3_1:85251572-85251591 None:intergenic 45.0%
AAGACAGCAACCTTCAGATC+GGG - chr3_1:85251580-85251599 None:intergenic 45.0%
! GGTTGCTGTCTTTTATGGTG+GGG + chr3_1:85251588-85251607 Msa0382600:CDS 45.0%
GAGTGCCCTCAAATTGTTGT+TGG + chr3_1:85251646-85251665 Msa0382600:CDS 45.0%
GGCGTTCCAACAACAATTTG+AGG - chr3_1:85251655-85251674 None:intergenic 45.0%
! CAAATTGTTGTTGGAACGCC+TGG + chr3_1:85251655-85251674 Msa0382600:CDS 45.0%
GCCTGGAAGAATACTAGCAT+TGG + chr3_1:85251672-85251691 Msa0382600:CDS 45.0%
GCCAATGCTAGTATTCTTCC+AGG - chr3_1:85251676-85251695 None:intergenic 45.0%
! GTTTTCAGCAACACTCAGCA+AGG + chr3_1:85251934-85251953 Msa0382600:CDS 45.0%
TTAACAACCTGCTGGTGAGT+TGG + chr3_1:85252149-85252168 Msa0382600:intron 45.0%
! CTGGATTGGAGTAGAAGATG+TGG + chr3_1:85252185-85252204 Msa0382600:intron 45.0%
TAGTAATGCTCCTGACTGTG+GGG + chr3_1:85252218-85252237 Msa0382600:intron 45.0%
AAGTACATAACCCCACAGTC+AGG - chr3_1:85252231-85252250 None:intergenic 45.0%
CCAGCATGAACAACAAGAGA+CGG - chr3_1:85252258-85252277 None:intergenic 45.0%
!! CGTCTCTTGTTGTTCATGCT+GGG + chr3_1:85252256-85252275 Msa0382600:intron 45.0%
AAACACGTGGACAAGAACTG+TGG + chr3_1:85252487-85252506 Msa0382600:intron 45.0%
TGGACAAGAACTGTGGTTCA+AGG + chr3_1:85252494-85252513 Msa0382600:intron 45.0%
GGACAAGAACTGTGGTTCAA+GGG + chr3_1:85252495-85252514 Msa0382600:intron 45.0%
! GGATTCCATTAGCTTGAGGA+CGG + chr3_1:85252545-85252564 Msa0382600:intron 45.0%
GAAGCCAAGTTAACCCTTCA+TGG + chr3_1:85252630-85252649 Msa0382600:CDS 45.0%
CAGTCCATGAAGGGTTAACT+TGG - chr3_1:85252637-85252656 None:intergenic 45.0%
CAAGTTAACCCTTCATGGAC+TGG + chr3_1:85252635-85252654 Msa0382600:CDS 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr3_1:85253239-85253258 Msa0382600:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr3_1:85253241-85253260 Msa0382600:intron 45.0%
TTGGATTGAGGGTTTGGAAG+GGG - chr3_1:85253448-85253467 None:intergenic 45.0%
GTTTGGATTGAGGGTTTGGA+AGG - chr3_1:85253450-85253469 None:intergenic 45.0%
GTGTGTTTGGATTGAGGGTT+TGG - chr3_1:85253235-85253254 None:intergenic 45.0%
CTTAGGGTGTGTTTGGATTG+AGG - chr3_1:85253460-85253479 None:intergenic 45.0%
GGAGGTTCAGGAAACAAATG+CGG + chr3_1:85253616-85253635 Msa0382600:intron 45.0%
GCGTTATAGAGGTTTCAAGG+AGG + chr3_1:85253820-85253839 Msa0382600:CDS 45.0%
!! GCTACAGATTTGGTTGGTAG+AGG + chr3_1:85253863-85253882 Msa0382600:CDS 45.0%
TGCAGACACTTACTTGCACA+GGG + chr3_1:85253937-85253956 Msa0382600:CDS 45.0%
! GGTAGTCTGACTCTTTTGGA+GGG + chr3_1:85254028-85254047 Msa0382600:intron 45.0%
TGGAGGGATACTTTACAGGT+TGG + chr3_1:85254044-85254063 Msa0382600:intron 45.0%
TGGTTCCAAATCTTCCAGCT+CGG - chr3_1:85254070-85254089 None:intergenic 45.0%
! GCTGGAAGATTTGGAACCAA+AGG + chr3_1:85254071-85254090 Msa0382600:CDS 45.0%
! GTGATTTGCAGGTTCAGTCA+AGG + chr3_1:85254208-85254227 Msa0382600:intron 45.0%
!! GTAGAGGTATCAATCTGCTC+AGG - chr3_1:85254258-85254277 None:intergenic 45.0%
GAGGGACCAAGTTGCATAAT+TGG + chr3_1:85254870-85254889 Msa0382600:intron 45.0%
!! TATTGCTTTGGGGCAACACT+TGG + chr3_1:85254990-85255009 Msa0382600:three_prime_UTR 45.0%
GTATGAGTACCCTCATCTAC+TGG + chr3_1:85255025-85255044 Msa0382600:three_prime_UTR 45.0%
ACCCTCATCTACTGGATTTG+TGG + chr3_1:85255033-85255052 Msa0382600:three_prime_UTR 45.0%
GCCACAAATCCAGTAGATGA+GGG - chr3_1:85255037-85255056 None:intergenic 45.0%
CTCATCTACTGGATTTGTGG+CGG + chr3_1:85255036-85255055 Msa0382600:three_prime_UTR 45.0%
GATTTGACCATGCTGATGTC+GGG + chr3_1:85255087-85255106 Msa0382600:three_prime_UTR 45.0%
GATCAACGGAAAAGTAGCCT+AGG - chr3_1:85255113-85255132 None:intergenic 45.0%
ACTGGTAGCATAGACATGGA+AGG - chr3_1:85255481-85255500 None:intergenic 45.0%
AGGAACTGGTAGCATAGACA+TGG - chr3_1:85255485-85255504 None:intergenic 45.0%
TCCGTGTAACGATGAGCTAA+AGG - chr3_1:85255505-85255524 None:intergenic 45.0%
!! AATATATATATAAATAAAGA+TGG - chr3_1:85250094-85250113 None:intergenic 5.0%
AGTTCACTCACTTCACCCAC+CGG + chr3_1:85249458-85249477 Msa0382600:intron 50.0%
TGATACGATACGATGCCGGT+GGG - chr3_1:85249476-85249495 None:intergenic 50.0%
ATGATACGATACGATGCCGG+TGG - chr3_1:85249477-85249496 None:intergenic 50.0%
GCGATGATACGATACGATGC+CGG - chr3_1:85249480-85249499 None:intergenic 50.0%
GGCATCGTATCGTATCATCG+CGG + chr3_1:85249479-85249498 Msa0382600:intron 50.0%
ATCGTATCGTATCATCGCGG+AGG + chr3_1:85249482-85249501 Msa0382600:intron 50.0%
TAGGGTTTCGAGAGACTGCA+AGG - chr3_1:85249549-85249568 None:intergenic 50.0%
GGAAGAGCTTCTCGATTACG+AGG + chr3_1:85249775-85249794 Msa0382600:CDS 50.0%
AGAGCTTCTCGATTACGAGG+AGG + chr3_1:85249778-85249797 Msa0382600:CDS 50.0%
GACAAAGCTCCCGATACCAA+CGG + chr3_1:85249806-85249825 Msa0382600:CDS 50.0%
!! ACCGTTGACTTTAGCTCCGT+TGG - chr3_1:85249825-85249844 None:intergenic 50.0%
TAAGGGGAAAGGGAGCGAAA+AGG - chr3_1:85250940-85250959 None:intergenic 50.0%
GAGAAAGGGAGTAAGGGGAA+AGG - chr3_1:85250951-85250970 None:intergenic 50.0%
AAAAGGCCCGAAGGAACCAA+CGG - chr3_1:85251241-85251260 None:intergenic 50.0%
ACCTCAAGCAATCCTCGGAA+TGG + chr3_1:85251296-85251315 Msa0382600:CDS 50.0%
TCCATTCCGAGGATTGCTTG+AGG - chr3_1:85251300-85251319 None:intergenic 50.0%
CAGCAGATTGATCCTGTTCC+AGG + chr3_1:85251381-85251400 Msa0382600:CDS 50.0%
ACAAGTGCAGAAACTTGGCC+TGG - chr3_1:85251402-85251421 None:intergenic 50.0%
CATACTTCCCACATTCCCTG+AGG + chr3_1:85252036-85252055 Msa0382600:intron 50.0%
!! CCGTCTCTTGTTGTTCATGC+TGG + chr3_1:85252255-85252274 Msa0382600:intron 50.0%
GTGCAAGTATCCAATGTCCG+TGG + chr3_1:85252427-85252446 Msa0382600:intron 50.0%
TTTGTCACCGACAAGTGCCA+CGG - chr3_1:85252447-85252466 None:intergenic 50.0%
CTGCAAGGAGACAAAACACG+TGG + chr3_1:85252474-85252493 Msa0382600:intron 50.0%
TACCTGCACCAGTCCATGAA+GGG - chr3_1:85252646-85252665 None:intergenic 50.0%
TCACGGCAGACAAGAAGGTA+AGG - chr3_1:85252743-85252762 None:intergenic 50.0%
TGTTAGTAGAGCAGCTGAGC+TGG + chr3_1:85252861-85252880 Msa0382600:CDS 50.0%
CTGGCATGTCCCAAGAAGAA+AGG + chr3_1:85252929-85252948 Msa0382600:CDS 50.0%
TATGAGATGTCCGCAGATGC+TGG + chr3_1:85252959-85252978 Msa0382600:intron 50.0%
ATGAGATGTCCGCAGATGCT+GGG + chr3_1:85252960-85252979 Msa0382600:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG + chr3_1:85253245-85253264 Msa0382600:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG + chr3_1:85253246-85253265 Msa0382600:intron 50.0%
TTGAGGGTTTGGAAGGGGAA+GGG - chr3_1:85253443-85253462 None:intergenic 50.0%
ATTGAGGGTTTGGAAGGGGA+AGG - chr3_1:85253444-85253463 None:intergenic 50.0%
CAGGAAACAAATGCGGCTGT+TGG + chr3_1:85253623-85253642 Msa0382600:intron 50.0%
! GTTTCAAGGAGGGGCATACT+AGG + chr3_1:85253831-85253850 Msa0382600:CDS 50.0%
CTGCAGACACTTACTTGCAC+AGG + chr3_1:85253936-85253955 Msa0382600:CDS 50.0%
! GGGTAGTCTGACTCTTTTGG+AGG + chr3_1:85254027-85254046 Msa0382600:intron 50.0%
ACGAGAAAATCTGACCCGTG+AGG + chr3_1:85254836-85254855 Msa0382600:intron 50.0%
CTCGGATATTCTTGCCTCAC+GGG - chr3_1:85254853-85254872 None:intergenic 50.0%
CCTCGGATATTCTTGCCTCA+CGG - chr3_1:85254854-85254873 None:intergenic 50.0%
CGTGAGGCAAGAATATCCGA+GGG + chr3_1:85254852-85254871 Msa0382600:intron 50.0%
CACTATGATGGCACTGCACA+TGG - chr3_1:85254968-85254987 None:intergenic 50.0%
CATGTGCAGTGCCATCATAG+TGG + chr3_1:85254966-85254985 Msa0382600:intron 50.0%
CAACACTTGGTCCGTTTGGA+CGG + chr3_1:85255003-85255022 Msa0382600:three_prime_UTR 50.0%
GGGTACTCATACCGTCCAAA+CGG - chr3_1:85255017-85255036 None:intergenic 50.0%
CGCCACAAATCCAGTAGATG+AGG - chr3_1:85255038-85255057 None:intergenic 50.0%
CGGTGATGCTGTTGTTGAAC+TGG + chr3_1:85255221-85255240 Msa0382600:three_prime_UTR 50.0%
ACGATAGCCCGAAGAAGCTC+TGG - chr3_1:85250033-85250052 None:intergenic 55.0%
!! CTTCGGGCTATCGTCGATTC+CGG + chr3_1:85250039-85250058 Msa0382600:intron 55.0%
!! GGATGGACTACAGGCCTGTT+TGG + chr3_1:85250501-85250520 Msa0382600:intron 55.0%
GCAGAAACTTGGCCTGGAAC+AGG - chr3_1:85251396-85251415 None:intergenic 55.0%
! AACCTGCTGGTGAGTTGGAG+TGG + chr3_1:85252154-85252173 Msa0382600:intron 55.0%
! ACCTGCTGGTGAGTTGGAGT+GGG + chr3_1:85252155-85252174 Msa0382600:intron 55.0%
! TTGAAGAGGAGGGGTGTGTG+TGG + chr3_1:85252351-85252370 Msa0382600:intron 55.0%
! TGAAGAGGAGGGGTGTGTGT+GGG + chr3_1:85252352-85252371 Msa0382600:intron 55.0%
!! TGTGTGTGGGTGGGTTGGTT+GGG + chr3_1:85252365-85252384 Msa0382600:intron 55.0%
CCAATGTCCGTGGCACTTGT+CGG + chr3_1:85252437-85252456 Msa0382600:intron 55.0%
AGGGTCCGTCCTCAAGCTAA+TGG - chr3_1:85252553-85252572 None:intergenic 55.0%
!! AACCCTTCATGGACTGGTGC+AGG + chr3_1:85252641-85252660 Msa0382600:CDS 55.0%
CTACCTGCACCAGTCCATGA+AGG - chr3_1:85252647-85252666 None:intergenic 55.0%
!! CTTCATGGACTGGTGCAGGT+AGG + chr3_1:85252645-85252664 Msa0382600:intron 55.0%
TGCTGTCACGGCAGACAAGA+AGG - chr3_1:85252748-85252767 None:intergenic 55.0%
! ACTTTACAGGTTGGCCGAGC+TGG + chr3_1:85254053-85254072 Msa0382600:intron 55.0%
GTTGGCCGAGCTGGAAGATT+TGG + chr3_1:85254062-85254081 Msa0382600:CDS 55.0%
CCGTGAGGCAAGAATATCCG+AGG + chr3_1:85254851-85254870 Msa0382600:intron 55.0%
! CCTGCTGGTGAGTTGGAGTG+GGG + chr3_1:85252156-85252175 Msa0382600:intron 60.0%
! CTGGTGAGTTGGAGTGGGGT+TGG + chr3_1:85252160-85252179 Msa0382600:intron 60.0%
! AGTTGGAGTGGGGTTGGCAC+TGG + chr3_1:85252166-85252185 Msa0382600:intron 60.0%
! GAGTGGGGTTGGCACTGGAT+TGG + chr3_1:85252171-85252190 Msa0382600:intron 60.0%
!! GTGTGTGTGGGTGGGTTGGT+TGG + chr3_1:85252364-85252383 Msa0382600:intron 60.0%
CCGACAAGTGCCACGGACAT+TGG - chr3_1:85252440-85252459 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr3_1:85253249-85253268 Msa0382600:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr3_1:85253250-85253269 Msa0382600:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr3_1:85253251-85253270 Msa0382600:intron 60.0%
GGTTTGGAAGGGGAAGGGAG+GGG - chr3_1:85253438-85253457 None:intergenic 60.0%
GGGTTTGGAAGGGGAAGGGA+GGG - chr3_1:85253439-85253458 None:intergenic 60.0%
AGGGTTTGGAAGGGGAAGGG+AGG - chr3_1:85253440-85253459 None:intergenic 60.0%
GGGGCAACACTTGGTCCGTT+TGG + chr3_1:85254999-85255018 Msa0382600:three_prime_UTR 60.0%
ACCATGCTGATGTCGGGCCT+AGG + chr3_1:85255093-85255112 Msa0382600:three_prime_UTR 60.0%
CCCCACTCCAACTCACCAGC+AGG - chr3_1:85252159-85252178 None:intergenic 65.0%
! AGAGGAGGGGTGTGTGTGGG+TGG + chr3_1:85252355-85252374 Msa0382600:intron 65.0%
! GAGGAGGGGTGTGTGTGGGT+GGG + chr3_1:85252356-85252375 Msa0382600:intron 65.0%
! AGGGGTGTGTGTGGGTGGGT+TGG + chr3_1:85252360-85252379 Msa0382600:intron 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr3_1:85253254-85253273 Msa0382600:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr3_1:85253255-85253274 Msa0382600:intron 65.0%
TGGAAGGGGAAGGGAGGGGA+GGG - chr3_1:85253434-85253453 None:intergenic 65.0%
TTGGAAGGGGAAGGGAGGGG+AGG - chr3_1:85253435-85253454 None:intergenic 65.0%
GCCTAGGCCCGACATCAGCA+TGG - chr3_1:85255097-85255116 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85249384 85255555 85249384 ID=Msa0382600;Name=Msa0382600
chr3_1 mRNA 85249384 85255555 85249384 ID=Msa0382600-mRNA-1;Parent=Msa0382600;Name=Msa0382600-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.81|0.75|0.91|0.72|0.66|12|570|416
chr3_1 exon 85249384 85249389 85249384 ID=Msa0382600-mRNA-1:exon:22311;Parent=Msa0382600-mRNA-1
chr3_1 exon 85249743 85249858 85249743 ID=Msa0382600-mRNA-1:exon:22312;Parent=Msa0382600-mRNA-1
chr3_1 exon 85249981 85250050 85249981 ID=Msa0382600-mRNA-1:exon:22313;Parent=Msa0382600-mRNA-1
chr3_1 exon 85251291 85251452 85251291 ID=Msa0382600-mRNA-1:exon:22314;Parent=Msa0382600-mRNA-1
chr3_1 exon 85251541 85251772 85251541 ID=Msa0382600-mRNA-1:exon:22315;Parent=Msa0382600-mRNA-1
chr3_1 exon 85251873 85251991 85251873 ID=Msa0382600-mRNA-1:exon:22316;Parent=Msa0382600-mRNA-1
chr3_1 exon 85252606 85252662 85252606 ID=Msa0382600-mRNA-1:exon:22317;Parent=Msa0382600-mRNA-1
chr3_1 exon 85252766 85252950 85252766 ID=Msa0382600-mRNA-1:exon:22318;Parent=Msa0382600-mRNA-1
chr3_1 exon 85253814 85253958 85253814 ID=Msa0382600-mRNA-1:exon:22319;Parent=Msa0382600-mRNA-1
chr3_1 exon 85254062 85254145 85254062 ID=Msa0382600-mRNA-1:exon:22320;Parent=Msa0382600-mRNA-1
chr3_1 exon 85254219 85254282 85254219 ID=Msa0382600-mRNA-1:exon:22321;Parent=Msa0382600-mRNA-1
chr3_1 exon 85254975 85255555 85254975 ID=Msa0382600-mRNA-1:exon:22322;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85249384 85249389 85249384 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85249743 85249858 85249743 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85249981 85250050 85249981 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85251291 85251452 85251291 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85251541 85251772 85251541 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85251873 85251991 85251873 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85252606 85252662 85252606 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85252766 85252950 85252766 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85253814 85253958 85253814 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85254062 85254145 85254062 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85254219 85254282 85254219 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 CDS 85254975 85254985 85254975 ID=Msa0382600-mRNA-1:cds;Parent=Msa0382600-mRNA-1
chr3_1 three_prime_UTR 85254986 85255555 85254986 ID=Msa0382600-mRNA-1:three_prime_utr;Parent=Msa0382600-mRNA-1
Gene Sequence

>Msa0382600

ATGGCGATAATGGGAGAACCAAAGGACGAAACTTACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGAAGACAAAGCTCCCGATACCAACGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTCAAACCAGAGCTTCTTCGGGCTATCTGCATACCTCAAGCAATCCTCGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAGACCGCTGTCTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGTCACACAAGAGAACTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTTAGTACCTACTTACCCGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAATATCAAAGTTCACAAGGATCTATTGAAAAATGAGTGCCCTCAAATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCTAGGGAGAAGAATCTTTCATTGAAGAATGTTCGTCATTTCGTTTTAGATGAGTGTGATAAGATGCTTGAATCACTGGACATGAGGAAAGACGTTCAAGACATTTTCAAGTTGACTCCCCACGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAGTCTGCAAAAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAAGCCAAGTTAACCCTTCATGGACTGGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAAAACCGCAAGTTGAATGATCTTCTTGATGCCCTAGACTTCAACCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAGACTACTTATAGAGTGCAATTTTCCATCTATATGCATTCACTCTGGCATGTCCCAAGAAGAAAGGTTGAAGCGTTATAGAGGTTTCAAGGAGGGGCATACTAGGATTCTTGTAGCTACAGATTTGGTTGGTAGAGGGATTGACATTGAACGTGTCAATATTGTTATAAACTATGACATGCCTGATTCTGCAGACACTTACTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGAACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCTTCTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTCGAAATAGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCATCATAG
Protein sequence

>Msa0382600

MAIMGEPKDETYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAICIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALAREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEIDIKQLPEQIDTSTYMPS*