Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231040 | XP_039686127.1 | 91.579 | 380 | 8 | 2 | 5 | 372 | 6 | 373 | 0.0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231040 | sp|Q8GSJ1|HIS1B_ARATH | 76.986 | 365 | 66 | 3 | 26 | 372 | 49 | 413 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231040 | G7JFL4 | 88.312 | 385 | 19 | 6 | 2 | 372 | 1 | 373 | 0.0 | 671 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0188430 | Msa0231040 | 0.811958 | 5.395510e-51 | -8.615850e-47 |
| Msa0231040 | Msa0270560 | 0.806170 | 9.369999e-50 | -8.615850e-47 |
| Msa0231040 | Msa0308990 | 0.856610 | 2.864641e-62 | -8.615850e-47 |
| Msa0231040 | Msa0515090 | 0.810409 | 1.169442e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231040 | MtrunA17_Chr4g0073831 | 88.312 | 385 | 19 | 6 | 2 | 372 | 1 | 373 | 0.0 | 671 |
| Msa0231040 | MtrunA17_Chr2g0277331 | 80.882 | 408 | 24 | 5 | 5 | 372 | 6 | 399 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231040 | AT1G09795.1 | 76.986 | 365 | 66 | 3 | 26 | 372 | 49 | 413 | 0.0 | 578 |
| Msa0231040 | AT1G58080.1 | 78.635 | 337 | 60 | 1 | 48 | 372 | 75 | 411 | 0.0 | 556 |
Find 125 sgRNAs with CRISPR-Local
Find 505 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATATATGTGTTCCATTTA+TGG | 0.114201 | 2_2:-3243333 | Msa0231040:three_prime_UTR |
| CCATTATCTTTCATAAATTT+AGG | 0.178616 | 2_2:+3245717 | None:intergenic |
| TCTGAAACTCAAGTCCTTAA+TGG | 0.195797 | 2_2:-3247485 | Msa0231040:CDS |
| CTTGATATACTCACTGAATT+TGG | 0.209989 | 2_2:-3247123 | Msa0231040:CDS |
| ATCTCTTTCCTGGCGGAGAC+TGG | 0.210739 | 2_2:+3247458 | None:intergenic |
| ACAACAAACTACTCCATAAA+TGG | 0.220482 | 2_2:+3243320 | None:intergenic |
| ACCATCATTGGCTGGGTTGC+AGG | 0.240929 | 2_2:-3244141 | Msa0231040:intron |
| AATTGAAGGTGGAACTGTTT+TGG | 0.258121 | 2_2:-3244550 | Msa0231040:CDS |
| GTCGTTACAGATAGTATCTT+TGG | 0.258249 | 2_2:+3243287 | None:intergenic |
| AGCTTTCCAACTTGGAAGTA+TGG | 0.273300 | 2_2:-3247212 | Msa0231040:CDS |
| GACTTGTACAATGCCTTCTT+TGG | 0.281592 | 2_2:+3243857 | None:intergenic |
| CCACTTCTGCATCGGCTTGT+AGG | 0.290273 | 2_2:-3240645 | Msa0231040:three_prime_UTR |
| AACGAAATTGCATTTCTTGC+TGG | 0.297884 | 2_2:-3240683 | Msa0231040:three_prime_UTR |
| CGCCAGCTCCTTTCTAAACT+TGG | 0.303940 | 2_2:-3243363 | Msa0231040:CDS |
| CGGAGACTGGGCTTCCATTA+AGG | 0.309814 | 2_2:+3247471 | None:intergenic |
| CCTAAATTTATGAAAGATAA+TGG | 0.318633 | 2_2:-3245717 | Msa0231040:CDS |
| ACTTATCTAACCAAGTATTA+TGG | 0.318977 | 2_2:+3240577 | None:intergenic |
| AGAAAGGAGCTGGCGCCATC+TGG | 0.330813 | 2_2:+3243371 | None:intergenic |
| CTTTGGCACACATATGACTA+TGG | 0.334395 | 2_2:+3243874 | None:intergenic |
| TTGTTTCAGATTCCTCAGTA+TGG | 0.337830 | 2_2:-3245945 | Msa0231040:intron |
| CTTGTTTGATTAACTAATGC+TGG | 0.342865 | 2_2:+3240379 | None:intergenic |
| GTGCACGAGGCTTTGGAGTA+TGG | 0.349565 | 2_2:-3246064 | Msa0231040:CDS |
| ACCAAGACGGATCTCTTTCC+TGG | 0.352781 | 2_2:+3247448 | None:intergenic |
| TATCATTGTGCACGAGGCTT+TGG | 0.356493 | 2_2:-3246071 | Msa0231040:CDS |
| TCGTTACAGATAGTATCTTT+GGG | 0.359986 | 2_2:+3243288 | None:intergenic |
| GAACAGGGGTGAAACCAATT+TGG | 0.367172 | 2_2:+3247567 | None:intergenic |
| TACTTGACTACTTGCAGAAC+AGG | 0.371707 | 2_2:+3247551 | None:intergenic |
| TTTAACTTCAACATTGTTGT+TGG | 0.383014 | 2_2:-3240534 | Msa0231040:three_prime_UTR |
| TCATGAGATGCTTGAAAGAT+TGG | 0.385558 | 2_2:-3244331 | Msa0231040:CDS |
| TCCATCACGCTTGCAGAAAA+CGG | 0.387763 | 2_2:+3243919 | None:intergenic |
| GGGAATTGCTGATGCTATCT+TGG | 0.397741 | 2_2:-3244619 | Msa0231040:CDS |
| ACGATGATGATGAGCCAAAT+TGG | 0.399056 | 2_2:-3247581 | Msa0231040:CDS |
| TTCAGAAATTGAAGAGGAGG+AGG | 0.402632 | 2_2:+3247502 | None:intergenic |
| CCATCACGCTTGCAGAAAAC+GGG | 0.416870 | 2_2:+3243920 | None:intergenic |
| ATTGAAAGAAAATAACTTGA+AGG | 0.424383 | 2_2:-3244574 | Msa0231040:CDS |
| ATGTGAAATTAGAAATTTGC+GGG | 0.426209 | 2_2:-3240407 | Msa0231040:three_prime_UTR |
| GAGGCACATCTGAGGGCGAT+GGG | 0.428682 | 2_2:-3244309 | Msa0231040:CDS |
| TAATACTTGGTTAGATAAGT+AGG | 0.438205 | 2_2:-3240574 | Msa0231040:three_prime_UTR |
| TTGTTGTTGGAGTTATACTA+TGG | 0.447465 | 2_2:-3240521 | Msa0231040:three_prime_UTR |
| ATTGTAAGAAAATTGTTATC+CGG | 0.447935 | 2_2:-3247171 | Msa0231040:CDS |
| TTAATTCTGTCCATAATACT+TGG | 0.449057 | 2_2:-3240587 | Msa0231040:three_prime_UTR |
| GGAGGCACATCTGAGGGCGA+TGG | 0.453025 | 2_2:-3244310 | Msa0231040:CDS |
| AGGCTGCTCTTGTTGCGAGC+AGG | 0.461210 | 2_2:-3244392 | Msa0231040:CDS |
| TCTCTTTCCTGGCGGAGACT+GGG | 0.461891 | 2_2:+3247459 | None:intergenic |
| AGTACTGAGCCAACCATCAT+TGG | 0.465847 | 2_2:-3244153 | Msa0231040:CDS |
| AGGAAGCAGTGCAGAGGAAG+TGG | 0.466330 | 2_2:-3244183 | Msa0231040:CDS |
| GAGGGCGATGGGGCAGTTCA+CGG | 0.466433 | 2_2:-3244298 | Msa0231040:intron |
| TACACTCCAGCTTTCCAACT+TGG | 0.467279 | 2_2:-3247220 | Msa0231040:intron |
| AAGCCTCTGAGAGTTGCAAC+TGG | 0.474293 | 2_2:-3245861 | Msa0231040:CDS |
| CTGAGCCAACCATCATTGGC+TGG | 0.475399 | 2_2:-3244149 | Msa0231040:CDS |
| AATACTTGGTTAGATAAGTA+GGG | 0.485402 | 2_2:-3240573 | Msa0231040:three_prime_UTR |
| ATGTAGTTCCACTACTTACA+AGG | 0.491288 | 2_2:+3244595 | None:intergenic |
| AGAAATTGAAGAGGAGGAGG+AGG | 0.498006 | 2_2:+3247505 | None:intergenic |
| AGTCATATGTGTGCCAAAGA+AGG | 0.500447 | 2_2:-3243870 | Msa0231040:CDS |
| AAATCGATGATTGGACGAAA+AGG | 0.502489 | 2_2:-3244369 | Msa0231040:CDS |
| CTGAAACCATACTTCCAAGT+TGG | 0.505934 | 2_2:+3247206 | None:intergenic |
| GAAGACATCCGACCTTTGCT+TGG | 0.507615 | 2_2:+3247422 | None:intergenic |
| TTGTTTGATTAACTAATGCT+GGG | 0.508108 | 2_2:+3240380 | None:intergenic |
| AGTTTCAGAAATTGAAGAGG+AGG | 0.510525 | 2_2:+3247499 | None:intergenic |
| GATACCAAGGTCAAGATCTC+CGG | 0.510734 | 2_2:+3247152 | None:intergenic |
| TTCGACTGCTGATGGAGCAC+TGG | 0.513957 | 2_2:-3245676 | Msa0231040:CDS |
| ACTATAGTCCAAGTTTAGAA+AGG | 0.521278 | 2_2:+3243355 | None:intergenic |
| GTCCAAGTTTAGAAAGGAGC+TGG | 0.532328 | 2_2:+3243361 | None:intergenic |
| TTAGTTAATCAAACAAGTGA+AGG | 0.533555 | 2_2:-3240373 | Msa0231040:three_prime_UTR |
| ATGGAAGCCCAGTCTCCGCC+AGG | 0.536174 | 2_2:-3247466 | Msa0231040:CDS |
| GCGAGCAGGAAATCGATGAT+TGG | 0.536182 | 2_2:-3244378 | Msa0231040:CDS |
| GAAAGGAGCTGGCGCCATCT+GGG | 0.539669 | 2_2:+3243372 | None:intergenic |
| GCCAGGAAAGAGATCCGTCT+TGG | 0.542357 | 2_2:-3247449 | Msa0231040:CDS |
| ACCTGCAACCCAGCCAATGA+TGG | 0.542827 | 2_2:+3244140 | None:intergenic |
| CTTGAGAAGGTCGAGTGTAT+CGG | 0.543647 | 2_2:+3247400 | None:intergenic |
| TTATCCGGAGATCTTGACCT+TGG | 0.545845 | 2_2:-3247156 | Msa0231040:CDS |
| AATAACTTGAAGGAAATTGA+AGG | 0.546732 | 2_2:-3244564 | Msa0231040:CDS |
| CGTCTTGGTTTGCCAAGCAA+AGG | 0.547016 | 2_2:-3247434 | Msa0231040:CDS |
| TGAGATGCTTGAAAGATTGG+AGG | 0.547977 | 2_2:-3244328 | Msa0231040:CDS |
| CCTACAAGCCGATGCAGAAG+TGG | 0.550151 | 2_2:+3240645 | None:intergenic |
| CGTTACAGATAGTATCTTTG+GGG | 0.550530 | 2_2:+3243289 | None:intergenic |
| TATACTCACTGAATTTGGCC+AGG | 0.550883 | 2_2:-3247118 | Msa0231040:intron |
| ATCTTGGACCTTGTAAGTAG+TGG | 0.552901 | 2_2:-3244603 | Msa0231040:CDS |
| GCTCATCATCATCGTCATCA+TGG | 0.559730 | 2_2:+3247589 | None:intergenic |
| AGCACTGGAGGCAGCTCCTG+CGG | 0.560029 | 2_2:-3245661 | Msa0231040:intron |
| TTGAGTTTCAGAAATTGAAG+AGG | 0.565355 | 2_2:+3247496 | None:intergenic |
| CGATACACTCGACCTTCTCA+AGG | 0.571951 | 2_2:-3247399 | Msa0231040:CDS |
| GACTGCTGATGGAGCACTGG+AGG | 0.576762 | 2_2:-3245673 | Msa0231040:CDS |
| AGATATTCCCACTTCTGCAT+CGG | 0.578518 | 2_2:-3240653 | Msa0231040:three_prime_UTR |
| GCGTAGCAGCAATTACTACT+TGG | 0.579670 | 2_2:+3247527 | None:intergenic |
| TTTCTGCAAGCGTGATGGAA+AGG | 0.581353 | 2_2:-3243915 | Msa0231040:CDS |
| TTCCACCTACCTCAATGAGC+TGG | 0.583516 | 2_2:-3240458 | Msa0231040:three_prime_UTR |
| TGAAAATGTAAATTCACTAG+AGG | 0.584392 | 2_2:-3245916 | Msa0231040:CDS |
| GATCTTGACCTTGGTATCGT+AGG | 0.585932 | 2_2:-3247147 | Msa0231040:CDS |
| GTTCATATGATGCAGATTGG+AGG | 0.586050 | 2_2:-3243444 | Msa0231040:intron |
| CGATCTTATCATTGTGCACG+AGG | 0.586126 | 2_2:-3246077 | Msa0231040:CDS |
| AAAGATTGGAGGCACATCTG+AGG | 0.586441 | 2_2:-3244317 | Msa0231040:CDS |
| AAGATTGGAGGCACATCTGA+GGG | 0.587964 | 2_2:-3244316 | Msa0231040:CDS |
| TGAGCCAACCATCATTGGCT+GGG | 0.591014 | 2_2:-3244148 | Msa0231040:CDS |
| GAAATTAGAAATTTGCGGGA+TGG | 0.591843 | 2_2:-3240403 | Msa0231040:three_prime_UTR |
| ACTTGGAAGTATGGTTTCAG+AGG | 0.598140 | 2_2:-3247203 | Msa0231040:CDS |
| ACTTGACTACTTGCAGAACA+GGG | 0.598969 | 2_2:+3247552 | None:intergenic |
| CATGTGAAATTAGAAATTTG+CGG | 0.601685 | 2_2:-3240408 | Msa0231040:three_prime_UTR |
| GCAACCCAGCCAATGATGGT+TGG | 0.605047 | 2_2:+3244144 | None:intergenic |
| ATGATGCAGATTGGAGGCAG+CGG | 0.611608 | 2_2:-3243438 | Msa0231040:intron |
| TTGGTTTGCCAAGCAAAGGT+CGG | 0.612452 | 2_2:-3247430 | Msa0231040:CDS |
| GCAGAAAACGGGACTTACAG+TGG | 0.618700 | 2_2:+3243931 | None:intergenic |
| GATGACCAGCTCATTGAGGT+AGG | 0.621980 | 2_2:+3240453 | None:intergenic |
| CTTTGCTTGGCAAACCAAGA+CGG | 0.625476 | 2_2:+3247435 | None:intergenic |
| AATCCAGTTGCAACTCTCAG+AGG | 0.625497 | 2_2:+3245858 | None:intergenic |
| TATGAGAGGAAGCAGTGCAG+AGG | 0.626577 | 2_2:-3244189 | Msa0231040:CDS |
| AGATAATGGCATTAAGCATG+TGG | 0.627844 | 2_2:-3245703 | Msa0231040:CDS |
| TTGATGAGGAAACTCCCAGA+TGG | 0.630461 | 2_2:-3243386 | Msa0231040:CDS |
| AGGCACATCTGAGGGCGATG+GGG | 0.631283 | 2_2:-3244308 | Msa0231040:CDS |
| GACCAGCTCATTGAGGTAGG+TGG | 0.635644 | 2_2:+3240456 | None:intergenic |
| TAGTTAATCAAACAAGTGAA+GGG | 0.635773 | 2_2:-3240372 | Msa0231040:three_prime_UTR |
| GTCTATACAGCAATTGAGAG+CGG | 0.638210 | 2_2:-3243837 | Msa0231040:intron |
| CAGGTCACTGCAAATATGAG+AGG | 0.643908 | 2_2:-3244203 | Msa0231040:CDS |
| CTACAAGCCGATGCAGAAGT+GGG | 0.646815 | 2_2:+3240646 | None:intergenic |
| ATAAGATGACCAGCTCATTG+AGG | 0.648580 | 2_2:+3240449 | None:intergenic |
| AACTTGAAGGAAATTGAAGG+TGG | 0.649831 | 2_2:-3244561 | Msa0231040:CDS |
| TGATTGTCGTTTATCCATTG+CGG | 0.655142 | 2_2:-3246041 | Msa0231040:intron |
| ATACTTGGTTAGATAAGTAG+GGG | 0.656405 | 2_2:-3240572 | Msa0231040:three_prime_UTR |
| CAGAAAACGGGACTTACAGT+GGG | 0.660083 | 2_2:+3243932 | None:intergenic |
| ACAATTGACAGTCCTTGAGA+AGG | 0.663029 | 2_2:+3247387 | None:intergenic |
| TATCAAGTCCTACGATACCA+AGG | 0.676300 | 2_2:+3247139 | None:intergenic |
| CTTGACTACTTGCAGAACAG+GGG | 0.698355 | 2_2:+3247553 | None:intergenic |
| TACTTGGTTAGATAAGTAGG+GGG | 0.701332 | 2_2:-3240571 | Msa0231040:three_prime_UTR |
| GTTACAGATAGTATCTTTGG+GGG | 0.708165 | 2_2:+3243290 | None:intergenic |
| AAGACGGATCTCTTTCCTGG+CGG | 0.740099 | 2_2:+3247451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTAATTATACTAAATAT+AGG | + | chr2_2:3241463-3241482 | None:intergenic | 10.0% |
| !!! | TTATTTATTCATTTATTTTG+AGG | + | chr2_2:3244774-3244793 | None:intergenic | 10.0% |
| !! | TTTATTTAACATGTATTTAA+AGG | - | chr2_2:3245055-3245074 | Msa0231040:intron | 10.0% |
| !! | TACATATATAAAATAAGAAA+TGG | - | chr2_2:3245739-3245758 | Msa0231040:intron | 10.0% |
| !! | TAATAACAAAATAATTAAGT+AGG | + | chr2_2:3245941-3245960 | None:intergenic | 10.0% |
| !! | ATATTTATTTACTAATCTAA+AGG | + | chr2_2:3245972-3245991 | None:intergenic | 10.0% |
| !! | TAAAAATATAATAAAATACC+CGG | - | chr2_2:3247201-3247220 | Msa0231040:CDS | 10.0% |
| !!! | TTTTTTTTTTCTTTTTCTGT+AGG | - | chr2_2:3241292-3241311 | Msa0231040:intron | 15.0% |
| !!! | GTTTAACTTTAAAATTTTGT+TGG | + | chr2_2:3241432-3241451 | None:intergenic | 15.0% |
| !! | TTAGTATAATTAACATGAAT+TGG | - | chr2_2:3241467-3241486 | Msa0231040:intron | 15.0% |
| !!! | TTTAAAATCTGAAAACATAA+AGG | + | chr2_2:3242344-3242363 | None:intergenic | 15.0% |
| !! | CAAAATTTATCAAAAACTAT+AGG | + | chr2_2:3242451-3242470 | None:intergenic | 15.0% |
| !! | ATTGTTTAAGTAAAACAATT+AGG | - | chr2_2:3242887-3242906 | Msa0231040:intron | 15.0% |
| !! | TTGATCTAATTATAAATTTC+TGG | - | chr2_2:3242929-3242948 | Msa0231040:intron | 15.0% |
| !!! | TTGAAAAAAATAAGTTTTAG+TGG | + | chr2_2:3246063-3246082 | None:intergenic | 15.0% |
| !! | AATATTATAGAACAAGAAAA+AGG | + | chr2_2:3246868-3246887 | None:intergenic | 15.0% |
| !!! | TTTTTCTTGTTCTATAATAT+TGG | - | chr2_2:3246867-3246886 | Msa0231040:intron | 15.0% |
| !!! | TTTTCTTGTTCTATAATATT+GGG | - | chr2_2:3246868-3246887 | Msa0231040:intron | 15.0% |
| !!! | TTTTTCTTTATCATAATAGT+AGG | - | chr2_2:3247032-3247051 | Msa0231040:intron | 15.0% |
| !!! | AATTTTCTTACAATGTCTTT+GGG | + | chr2_2:3240769-3240788 | None:intergenic | 20.0% |
| !! | ATTGTAAGAAAATTGTTATC+CGG | - | chr2_2:3240775-3240794 | Msa0231040:intron | 20.0% |
| !! | AATCATACAAAATTACTGTT+TGG | - | chr2_2:3240969-3240988 | Msa0231040:intron | 20.0% |
| !! | CATTTCTTTCAAATAAATGT+TGG | + | chr2_2:3241185-3241204 | None:intergenic | 20.0% |
| !! | ATAAAAAAAGTTAAGCTTAC+GGG | + | chr2_2:3241822-3241841 | None:intergenic | 20.0% |
| !! | CATAAAAAAAGTTAAGCTTA+CGG | + | chr2_2:3241823-3241842 | None:intergenic | 20.0% |
| !! | CCATTATCTTTCATAAATTT+AGG | + | chr2_2:3242232-3242251 | None:intergenic | 20.0% |
| !! | CCTAAATTTATGAAAGATAA+TGG | - | chr2_2:3242229-3242248 | Msa0231040:intron | 20.0% |
| !!! | AGATTATTTTCACATTTCAT+AGG | - | chr2_2:3242569-3242588 | Msa0231040:intron | 20.0% |
| !!! | TCAAATAAGAAAGTATAGAT+TGG | + | chr2_2:3242810-3242829 | None:intergenic | 20.0% |
| !!! | TCTATACTTTCTTATTTGAA+AGG | - | chr2_2:3242811-3242830 | Msa0231040:intron | 20.0% |
| !!! | CTATACTTTCTTATTTGAAA+GGG | - | chr2_2:3242812-3242831 | Msa0231040:intron | 20.0% |
| !!! | GAAATATTTTATATGGAAAG+AGG | + | chr2_2:3243144-3243163 | None:intergenic | 20.0% |
| !!! | TAACAGGGAAATATTTTATA+TGG | + | chr2_2:3243151-3243170 | None:intergenic | 20.0% |
| !! | AAAATGAATCAAAAAAGATC+AGG | + | chr2_2:3243277-3243296 | None:intergenic | 20.0% |
| !! | ATTGAAAGAAAATAACTTGA+AGG | - | chr2_2:3243372-3243391 | Msa0231040:CDS | 20.0% |
| !!! | TATTTTTCTTGTTCTTAAGT+TGG | + | chr2_2:3244213-3244232 | None:intergenic | 20.0% |
| !! | ACAAGAAAAATAGAAAAGTA+AGG | - | chr2_2:3244221-3244240 | Msa0231040:intron | 20.0% |
| !! | TTATATATGTGTTCCATTTA+TGG | - | chr2_2:3244613-3244632 | Msa0231040:CDS | 20.0% |
| !!! | AAGTTAATCTCTCAAATTTT+GGG | + | chr2_2:3244684-3244703 | None:intergenic | 20.0% |
| !!! | TAAGTTAATCTCTCAAATTT+TGG | + | chr2_2:3244685-3244704 | None:intergenic | 20.0% |
| !! | ATATAAAATTCCTAAGAACA+AGG | - | chr2_2:3244843-3244862 | Msa0231040:intron | 20.0% |
| !!! | CATTATCTGATTTTCAAATA+CGG | - | chr2_2:3244990-3245009 | Msa0231040:intron | 20.0% |
| !! | ACTTGTATATTTGTTTGTTT+GGG | + | chr2_2:3245029-3245048 | None:intergenic | 20.0% |
| !! | AACTTGTATATTTGTTTGTT+TGG | + | chr2_2:3245030-3245049 | None:intergenic | 20.0% |
| !! | AAGACAATGATTAATTTACT+CGG | + | chr2_2:3245549-3245568 | None:intergenic | 20.0% |
| !!! | TTAGTAAATACTTTTTGTGA+AGG | + | chr2_2:3245842-3245861 | None:intergenic | 20.0% |
| !! | AATAATTAAGTAGGAGTTAT+TGG | + | chr2_2:3245932-3245951 | None:intergenic | 20.0% |
| !! | TTTGATGCTTCTTAAATAAT+AGG | + | chr2_2:3246228-3246247 | None:intergenic | 20.0% |
| !!! | GTTTTTAGTTAAAACAAGTT+AGG | + | chr2_2:3246251-3246270 | None:intergenic | 20.0% |
| !!! | ATTGTTCTTTAATTTACGTA+TGG | + | chr2_2:3246396-3246415 | None:intergenic | 20.0% |
| !! | GTAAAAACTTTGAATTGTTA+AGG | + | chr2_2:3246495-3246514 | None:intergenic | 20.0% |
| !! | TTTACATAAACTACACTAAA+AGG | - | chr2_2:3246510-3246529 | Msa0231040:intron | 20.0% |
| !! | ATCATACACTTAGAAAAATA+GGG | + | chr2_2:3246704-3246723 | None:intergenic | 20.0% |
| !!! | TATTTTTCTAAGTGTATGAT+CGG | - | chr2_2:3246704-3246723 | Msa0231040:intron | 20.0% |
| !! | AAGAAAGTGATTCTATAATA+TGG | - | chr2_2:3246968-3246987 | Msa0231040:intron | 20.0% |
| !! | TATGATAAAGAAAAATGACT+TGG | + | chr2_2:3247027-3247046 | None:intergenic | 20.0% |
| !! | CAATTTTCTTACAATGTCTT+TGG | + | chr2_2:3240770-3240789 | None:intergenic | 25.0% |
| !! | TGTAATTTGTCACTAAGATA+GGG | + | chr2_2:3241110-3241129 | None:intergenic | 25.0% |
| ! | TTCTTTCAAATAAATGTTGG+AGG | + | chr2_2:3241182-3241201 | None:intergenic | 25.0% |
| ! | AATCTGTTATCATCAATCTA+GGG | + | chr2_2:3241267-3241286 | None:intergenic | 25.0% |
| ! | TAATCTGTTATCATCAATCT+AGG | + | chr2_2:3241268-3241287 | None:intergenic | 25.0% |
| !!! | AAGTTGGTATAACGTTTAAT+AGG | + | chr2_2:3241384-3241403 | None:intergenic | 25.0% |
| ! | TATTAAACGTTATACCAACT+TGG | - | chr2_2:3241383-3241402 | Msa0231040:intron | 25.0% |
| !! | ATCTTGAAGCATTTCTAATT+AGG | + | chr2_2:3241606-3241625 | None:intergenic | 25.0% |
| ! | TGCATGTGTTAAAATTTAAC+AGG | - | chr2_2:3241679-3241698 | Msa0231040:intron | 25.0% |
| ! | TATGTTTATCATTCTTTGTC+AGG | - | chr2_2:3241839-3241858 | Msa0231040:intron | 25.0% |
| ! | ATGTTTATCATTCTTTGTCA+GGG | - | chr2_2:3241840-3241859 | Msa0231040:intron | 25.0% |
| ! | CAAAAAACAATGATACTGAT+AGG | + | chr2_2:3241957-3241976 | None:intergenic | 25.0% |
| !! | TTTTCAAATATTCCATACTG+AGG | + | chr2_2:3242016-3242035 | None:intergenic | 25.0% |
| ! | TGAAAATGTAAATTCACTAG+AGG | - | chr2_2:3242030-3242049 | Msa0231040:intron | 25.0% |
| ! | TTAGTTGAATGTGAATACAT+AGG | + | chr2_2:3242116-3242135 | None:intergenic | 25.0% |
| !! | TGTTTACCTTTTAAATGAGA+AGG | - | chr2_2:3242170-3242189 | Msa0231040:intron | 25.0% |
| ! | TTGAATCAAATGATAGCTAT+TGG | - | chr2_2:3242405-3242424 | Msa0231040:intron | 25.0% |
| ! | TGAATCAAATGATAGCTATT+GGG | - | chr2_2:3242406-3242425 | Msa0231040:intron | 25.0% |
| ! | ATAGCTTAATACACTAATCA+TGG | - | chr2_2:3242481-3242500 | Msa0231040:intron | 25.0% |
| !! | AATGGTTATCCTTGATTTTT+GGG | + | chr2_2:3242525-3242544 | None:intergenic | 25.0% |
| ! | TAGGATGAAAAACTGTAAAA+CGG | - | chr2_2:3242588-3242607 | Msa0231040:intron | 25.0% |
| ! | TAGTCAATATTCTGTATTCA+AGG | - | chr2_2:3242660-3242679 | Msa0231040:intron | 25.0% |
| !!! | AAATTTCTGGTTCATTTGAA+AGG | - | chr2_2:3242942-3242961 | Msa0231040:intron | 25.0% |
| ! | AATAACTTGAAGGAAATTGA+AGG | - | chr2_2:3243382-3243401 | Msa0231040:CDS | 25.0% |
| ! | GCAAAAAGAAAATACAGAAA+AGG | + | chr2_2:3243888-3243907 | None:intergenic | 25.0% |
| !!! | AGTTTGAGTTTTCTATCAAA+AGG | - | chr2_2:3244162-3244181 | Msa0231040:CDS | 25.0% |
| !!! | GTTTGAGTTTTCTATCAAAA+GGG | - | chr2_2:3244163-3244182 | Msa0231040:CDS | 25.0% |
| !!! | TTTGAGTTTTCTATCAAAAG+GGG | - | chr2_2:3244164-3244183 | Msa0231040:CDS | 25.0% |
| ! | AATAGAAAAGTAAGGTTGAA+TGG | - | chr2_2:3244229-3244248 | Msa0231040:intron | 25.0% |
| ! | ATAGAAAAGTAAGGTTGAAT+GGG | - | chr2_2:3244230-3244249 | Msa0231040:intron | 25.0% |
| ! | TCATCAAAAATATAGGTCAA+GGG | + | chr2_2:3244547-3244566 | None:intergenic | 25.0% |
| ! | AGTTTCCTCATCAAAAATAT+AGG | + | chr2_2:3244554-3244573 | None:intergenic | 25.0% |
| !! | TGATTTTCAAATACGGAAAA+GGG | - | chr2_2:3244997-3245016 | Msa0231040:intron | 25.0% |
| !! | ATCTTGCATATTTTGTAAGT+TGG | + | chr2_2:3245611-3245630 | None:intergenic | 25.0% |
| ! | AGTAAATAAATATAAGCACC+TGG | - | chr2_2:3245979-3245998 | Msa0231040:intron | 25.0% |
| ! | GTTACTACATTATAAACGAA+AGG | - | chr2_2:3246012-3246031 | Msa0231040:intron | 25.0% |
| ! | TTGACTCAAAATTTACTCAA+AGG | - | chr2_2:3246145-3246164 | Msa0231040:intron | 25.0% |
| ! | TATGATAATAGAGAATGCTA+CGG | + | chr2_2:3246199-3246218 | None:intergenic | 25.0% |
| !!! | TTGGACTAATTTTTTTCTCA+TGG | - | chr2_2:3246329-3246348 | Msa0231040:intron | 25.0% |
| !!! | GAATTCGATTTTTCTAAAAC+GGG | + | chr2_2:3246374-3246393 | None:intergenic | 25.0% |
| !!! | GGAATTCGATTTTTCTAAAA+CGG | + | chr2_2:3246375-3246394 | None:intergenic | 25.0% |
| ! | ATTAATGAGAAATGATAGCA+AGG | - | chr2_2:3246574-3246593 | Msa0231040:intron | 25.0% |
| ! | TTAATGAGAAATGATAGCAA+GGG | - | chr2_2:3246575-3246594 | Msa0231040:intron | 25.0% |
| ! | GATCATACACTTAGAAAAAT+AGG | + | chr2_2:3246705-3246724 | None:intergenic | 25.0% |
| ! | TAGTAGGAATAGATAGTTAT+AGG | - | chr2_2:3247048-3247067 | Msa0231040:intron | 25.0% |
| ! | AGTAGGAATAGATAGTTATA+GGG | - | chr2_2:3247049-3247068 | Msa0231040:intron | 25.0% |
| ! | TATCACTCAATAAATCACAA+AGG | - | chr2_2:3247137-3247156 | Msa0231040:CDS | 25.0% |
| ! | TTAATTCTGTCCATAATACT+TGG | - | chr2_2:3247359-3247378 | Msa0231040:intron | 25.0% |
| ! | ACTTATCTAACCAAGTATTA+TGG | + | chr2_2:3247372-3247391 | None:intergenic | 25.0% |
| ! | TAATACTTGGTTAGATAAGT+AGG | - | chr2_2:3247372-3247391 | Msa0231040:intron | 25.0% |
| ! | AATACTTGGTTAGATAAGTA+GGG | - | chr2_2:3247373-3247392 | Msa0231040:intron | 25.0% |
| !! | TTTAACTTCAACATTGTTGT+TGG | - | chr2_2:3247412-3247431 | Msa0231040:CDS | 25.0% |
| ! | CATGTGAAATTAGAAATTTG+CGG | - | chr2_2:3247538-3247557 | Msa0231040:CDS | 25.0% |
| ! | ATGTGAAATTAGAAATTTGC+GGG | - | chr2_2:3247539-3247558 | Msa0231040:CDS | 25.0% |
| ! | TTGTTTGATTAACTAATGCT+GGG | + | chr2_2:3247569-3247588 | None:intergenic | 25.0% |
| ! | TTAGTTAATCAAACAAGTGA+AGG | - | chr2_2:3247573-3247592 | Msa0231040:CDS | 25.0% |
| ! | TAGTTAATCAAACAAGTGAA+GGG | - | chr2_2:3247574-3247593 | Msa0231040:CDS | 25.0% |
| TTGAGTTTCAGAAATTGAAG+AGG | + | chr2_2:3240453-3240472 | None:intergenic | 30.0% | |
| CTTGATATACTCACTGAATT+TGG | - | chr2_2:3240823-3240842 | Msa0231040:intron | 30.0% | |
| TCAGTCACATTAATTGAGAA+GGG | + | chr2_2:3240918-3240937 | None:intergenic | 30.0% | |
| ! | TAATTTGTCACTAAGATAGG+GGG | + | chr2_2:3241108-3241127 | None:intergenic | 30.0% |
| ! | GTAATTTGTCACTAAGATAG+GGG | + | chr2_2:3241109-3241128 | None:intergenic | 30.0% |
| ! | CTGTAATTTGTCACTAAGAT+AGG | + | chr2_2:3241111-3241130 | None:intergenic | 30.0% |
| CTATCTTAGTGACAAATTAC+AGG | - | chr2_2:3241109-3241128 | Msa0231040:intron | 30.0% | |
| ! | TTTTCAACATCCACATCTTT+TGG | - | chr2_2:3241140-3241159 | Msa0231040:intron | 30.0% |
| AATTCCAAAACCAAAAGATG+TGG | + | chr2_2:3241153-3241172 | None:intergenic | 30.0% | |
| TTTCAAATAAATGTTGGAGG+TGG | + | chr2_2:3241179-3241198 | None:intergenic | 30.0% | |
| AGAAAAAACCACCTCTAAAT+TGG | - | chr2_2:3241236-3241255 | Msa0231040:intron | 30.0% | |
| ATCTGTTATCATCAATCTAG+GGG | + | chr2_2:3241266-3241285 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTCTGTAGGAAGT+AGG | - | chr2_2:3241299-3241318 | Msa0231040:intron | 30.0% |
| !!! | TGCAGTTAGTTTTATTCCTT+AGG | + | chr2_2:3241347-3241366 | None:intergenic | 30.0% |
| AAAAGTAGATATGTCGATCA+GGG | + | chr2_2:3241721-3241740 | None:intergenic | 30.0% | |
| CAGGAAAATTGTGGATATAA+TGG | + | chr2_2:3241782-3241801 | None:intergenic | 30.0% | |
| ATCAGACCTTCTCATTTAAA+AGG | + | chr2_2:3242179-3242198 | None:intergenic | 30.0% | |
| GAATCAAATGATAGCTATTG+GGG | - | chr2_2:3242407-3242426 | Msa0231040:intron | 30.0% | |
| ! | GAATGGTTATCCTTGATTTT+TGG | + | chr2_2:3242526-3242545 | None:intergenic | 30.0% |
| ACCATTCTGTTAATGTTTAG+TGG | - | chr2_2:3242539-3242558 | Msa0231040:intron | 30.0% | |
| ! | CTATCTGGTTGATTAATTTG+TGG | - | chr2_2:3242621-3242640 | Msa0231040:intron | 30.0% |
| TGAACTTTAATAAATGCTGC+TGG | + | chr2_2:3242854-3242873 | None:intergenic | 30.0% | |
| ATCAAACTTCCAAATCAATG+GGG | + | chr2_2:3242914-3242933 | None:intergenic | 30.0% | |
| GATCAAACTTCCAAATCAAT+GGG | + | chr2_2:3242915-3242934 | None:intergenic | 30.0% | |
| AGATCAAACTTCCAAATCAA+TGG | + | chr2_2:3242916-3242935 | None:intergenic | 30.0% | |
| !! | TTATCGTTTTCTCCGTTTTT+TGG | - | chr2_2:3243168-3243187 | Msa0231040:intron | 30.0% |
| CATGTACAAAGACCAAAAAA+CGG | + | chr2_2:3243183-3243202 | None:intergenic | 30.0% | |
| AAAAGATCAGGTCAAGTATA+TGG | + | chr2_2:3243265-3243284 | None:intergenic | 30.0% | |
| TTGTCTTTGCTCTAATTAGA+TGG | - | chr2_2:3243306-3243325 | Msa0231040:three_prime_UTR | 30.0% | |
| TGTCTTTGCTCTAATTAGAT+GGG | - | chr2_2:3243307-3243326 | Msa0231040:three_prime_UTR | 30.0% | |
| ! | AATTTTCACGATTTGTAACC+TGG | + | chr2_2:3243426-3243445 | None:intergenic | 30.0% |
| ACAATAGATCGCAATAGTTA+AGG | + | chr2_2:3243454-3243473 | None:intergenic | 30.0% | |
| ACAAAAAGAAACTGGAGTTT+GGG | + | chr2_2:3243699-3243718 | None:intergenic | 30.0% | |
| AACAAAAAGAAACTGGAGTT+TGG | + | chr2_2:3243700-3243719 | None:intergenic | 30.0% | |
| AAAACGGAACAAAAAGAAAC+TGG | + | chr2_2:3243707-3243726 | None:intergenic | 30.0% | |
| CCGAATCTACAATTAGAAAA+CGG | + | chr2_2:3243723-3243742 | None:intergenic | 30.0% | |
| ! | CCGTTTTCTAATTGTAGATT+CGG | - | chr2_2:3243720-3243739 | Msa0231040:intron | 30.0% |
| ! | CTTTTTGCACTAGTGAAATA+TGG | - | chr2_2:3243900-3243919 | Msa0231040:CDS | 30.0% |
| !! | CTAATTTTAAGTGTCATCCT+CGG | - | chr2_2:3243974-3243993 | Msa0231040:intron | 30.0% |
| TATCAAAAGGGGAATATTGT+TGG | - | chr2_2:3244175-3244194 | Msa0231040:CDS | 30.0% | |
| ATCAAAAGGGGAATATTGTT+GGG | - | chr2_2:3244176-3244195 | Msa0231040:CDS | 30.0% | |
| ATATCCACAATCAATAGAAC+TGG | + | chr2_2:3244271-3244290 | None:intergenic | 30.0% | |
| ! | AAAGATAAGCAGAAGTTTTG+AGG | + | chr2_2:3244370-3244389 | None:intergenic | 30.0% |
| CTCATCAAAAATATAGGTCA+AGG | + | chr2_2:3244548-3244567 | None:intergenic | 30.0% | |
| !! | CTTGACCTATATTTTTGATG+AGG | - | chr2_2:3244546-3244565 | Msa0231040:CDS | 30.0% |
| ACTATAGTCCAAGTTTAGAA+AGG | + | chr2_2:3244594-3244613 | None:intergenic | 30.0% | |
| ACAACAAACTACTCCATAAA+TGG | + | chr2_2:3244629-3244648 | None:intergenic | 30.0% | |
| TCGTTACAGATAGTATCTTT+GGG | + | chr2_2:3244661-3244680 | None:intergenic | 30.0% | |
| ! | TAATGATAACGACTTACAGT+TGG | + | chr2_2:3244975-3244994 | None:intergenic | 30.0% |
| ! | CTGATTTTCAAATACGGAAA+AGG | - | chr2_2:3244996-3245015 | Msa0231040:intron | 30.0% |
| AAGTTCTTCGTAGATATTTG+TGG | - | chr2_2:3245224-3245243 | Msa0231040:intron | 30.0% | |
| AGTTCTTCGTAGATATTTGT+GGG | - | chr2_2:3245225-3245244 | Msa0231040:intron | 30.0% | |
| ! | ATTGTGAGTGATCTATTTTG+TGG | + | chr2_2:3245520-3245539 | None:intergenic | 30.0% |
| TAATAGCTGCTATATTGCTA+AGG | + | chr2_2:3245781-3245800 | None:intergenic | 30.0% | |
| TATTTAGGAGCAATAGGAAT+AGG | + | chr2_2:3245879-3245898 | None:intergenic | 30.0% | |
| CTACATTATAAACGAAAGGT+AGG | - | chr2_2:3246016-3246035 | Msa0231040:intron | 30.0% | |
| GCATTCTCTATTATCATATC+AGG | - | chr2_2:3246201-3246220 | Msa0231040:intron | 30.0% | |
| ! | TGGAATGATTAGTTGATCAA+AGG | + | chr2_2:3246273-3246292 | None:intergenic | 30.0% |
| AGTGAGTTAGAATGGTTTAT+TGG | + | chr2_2:3246293-3246312 | None:intergenic | 30.0% | |
| TGGCACAATACTTAAAGAAT+AGG | - | chr2_2:3246812-3246831 | Msa0231040:intron | 30.0% | |
| CACAATACTTAAAGAATAGG+AGG | - | chr2_2:3246815-3246834 | Msa0231040:intron | 30.0% | |
| CTTGTTCTATAATATTGGGA+TGG | - | chr2_2:3246872-3246891 | Msa0231040:intron | 30.0% | |
| ATACTTGGTTAGATAAGTAG+GGG | - | chr2_2:3247374-3247393 | Msa0231040:intron | 30.0% | |
| ! | TTGTTGTTGGAGTTATACTA+TGG | - | chr2_2:3247425-3247444 | Msa0231040:CDS | 30.0% |
| CTTGTTTGATTAACTAATGC+TGG | + | chr2_2:3247570-3247589 | None:intergenic | 30.0% | |
| AGTTTCAGAAATTGAAGAGG+AGG | + | chr2_2:3240450-3240469 | None:intergenic | 35.0% | |
| ! | TCTGAAACTCAAGTCCTTAA+TGG | - | chr2_2:3240461-3240480 | Msa0231040:three_prime_UTR | 35.0% |
| ATTTGAGCAACATACTGTCT+GGG | + | chr2_2:3240602-3240621 | None:intergenic | 35.0% | |
| AATTTGAGCAACATACTGTC+TGG | + | chr2_2:3240603-3240622 | None:intergenic | 35.0% | |
| AGATTTAGAAGAGAAGCAGT+AGG | + | chr2_2:3240682-3240701 | None:intergenic | 35.0% | |
| CATTAATTGAGAAGGGTAGT+TGG | + | chr2_2:3240911-3240930 | None:intergenic | 35.0% | |
| GTCAGTCACATTAATTGAGA+AGG | + | chr2_2:3240919-3240938 | None:intergenic | 35.0% | |
| TTACCACATGTAGTACGTAA+CGG | + | chr2_2:3240950-3240969 | None:intergenic | 35.0% | |
| TACACTTGTGTTCAGAATGA+GGG | + | chr2_2:3241025-3241044 | None:intergenic | 35.0% | |
| TTACACTTGTGTTCAGAATG+AGG | + | chr2_2:3241026-3241045 | None:intergenic | 35.0% | |
| TGTAATAGCCCTTCATTGTT+TGG | - | chr2_2:3241041-3241060 | Msa0231040:intron | 35.0% | |
| GTAATAGCCCTTCATTGTTT+GGG | - | chr2_2:3241042-3241061 | Msa0231040:intron | 35.0% | |
| GAGAATTCCCAAACAATGAA+GGG | + | chr2_2:3241052-3241071 | None:intergenic | 35.0% | |
| TGAGAATTCCCAAACAATGA+AGG | + | chr2_2:3241053-3241072 | None:intergenic | 35.0% | |
| ATTGTTTGGGAATTCTCACT+TGG | - | chr2_2:3241055-3241074 | Msa0231040:intron | 35.0% | |
| AATTTGTCACTAAGATAGGG+GGG | + | chr2_2:3241107-3241126 | None:intergenic | 35.0% | |
| !!! | ACATCCACATCTTTTGGTTT+TGG | - | chr2_2:3241146-3241165 | Msa0231040:intron | 35.0% |
| ATATTCTAGATCTGCACCTA+AGG | - | chr2_2:3241328-3241347 | Msa0231040:intron | 35.0% | |
| ! | AGATATTTTACATGAAGCCC+GGG | + | chr2_2:3241658-3241677 | None:intergenic | 35.0% |
| ! | GAGATATTTTACATGAAGCC+CGG | + | chr2_2:3241659-3241678 | None:intergenic | 35.0% |
| CAAAAGTAGATATGTCGATC+AGG | + | chr2_2:3241722-3241741 | None:intergenic | 35.0% | |
| ! | ATATCCACAATTTTCCTGCT+TGG | - | chr2_2:3241784-3241803 | Msa0231040:intron | 35.0% |
| TTAAGCTTACGGGAAAAGTA+AGG | + | chr2_2:3241812-3241831 | None:intergenic | 35.0% | |
| ! | TGATTGTCGTTTATCCATTG+CGG | - | chr2_2:3241905-3241924 | Msa0231040:intron | 35.0% |
| !!! | GTAATTTTAACTCACCGCAA+TGG | + | chr2_2:3241922-3241941 | None:intergenic | 35.0% |
| ! | TGAGGAATCTGAAACAAATG+AGG | + | chr2_2:3241998-3242017 | None:intergenic | 35.0% |
| TTGTTTCAGATTCCTCAGTA+TGG | - | chr2_2:3242001-3242020 | Msa0231040:intron | 35.0% | |
| ! | AGATAATGGCATTAAGCATG+TGG | - | chr2_2:3242243-3242262 | Msa0231040:intron | 35.0% |
| AAATGATAGCTATTGGGGTT+TGG | - | chr2_2:3242412-3242431 | Msa0231040:intron | 35.0% | |
| TCATGTGATCCCAAAAATCA+AGG | - | chr2_2:3242513-3242532 | Msa0231040:intron | 35.0% | |
| GCCACTAAACATTAACAGAA+TGG | + | chr2_2:3242543-3242562 | None:intergenic | 35.0% | |
| AACGGAAGATGAATTCTATC+TGG | - | chr2_2:3242606-3242625 | Msa0231040:intron | 35.0% | |
| !! | TTTCTGGTTCATTTGAAAGG+AGG | - | chr2_2:3242945-3242964 | Msa0231040:intron | 35.0% |
| AAACGGAGAAAACGATAACA+GGG | + | chr2_2:3243166-3243185 | None:intergenic | 35.0% | |
| AAAACGGAGAAAACGATAAC+AGG | + | chr2_2:3243167-3243186 | None:intergenic | 35.0% | |
| ATGTAGTTCCACTACTTACA+AGG | + | chr2_2:3243354-3243373 | None:intergenic | 35.0% | |
| AACTTGAAGGAAATTGAAGG+TGG | - | chr2_2:3243385-3243404 | Msa0231040:CDS | 35.0% | |
| ! | AATTGAAGGTGGAACTGTTT+TGG | - | chr2_2:3243396-3243415 | Msa0231040:CDS | 35.0% |
| TAGATCGCAATAGTTAAGGT+CGG | + | chr2_2:3243450-3243469 | None:intergenic | 35.0% | |
| !! | TTCTTATGGCTTGTTGTATC+TGG | - | chr2_2:3243504-3243523 | Msa0231040:intron | 35.0% |
| ! | CTGACAATTGAACACTTTTC+AGG | - | chr2_2:3243534-3243553 | Msa0231040:intron | 35.0% |
| AAATCGATGATTGGACGAAA+AGG | - | chr2_2:3243577-3243596 | Msa0231040:intron | 35.0% | |
| TCATGAGATGCTTGAAAGAT+TGG | - | chr2_2:3243615-3243634 | Msa0231040:intron | 35.0% | |
| TTTCTAATTGTAGATTCGGC+AGG | - | chr2_2:3243724-3243743 | Msa0231040:intron | 35.0% | |
| ATCCTCCCCTAAAATGAATA+GGG | + | chr2_2:3243860-3243879 | None:intergenic | 35.0% | |
| CGAGGATGACACTTAAAATT+AGG | + | chr2_2:3243976-3243995 | None:intergenic | 35.0% | |
| GAATATTGTTGGGAGTTTGT+GGG | - | chr2_2:3244186-3244205 | Msa0231040:CDS | 35.0% | |
| AATATTGTTGGGAGTTTGTG+GGG | - | chr2_2:3244187-3244206 | Msa0231040:CDS | 35.0% | |
| ! | GAAACCAGTTCTATTGATTG+TGG | - | chr2_2:3244264-3244283 | Msa0231040:intron | 35.0% |
| AAACTTCTGCTTATCTTTCG+TGG | - | chr2_2:3244372-3244391 | Msa0231040:CDS | 35.0% | |
| ATCATATGAACGTAGTCAAC+AGG | + | chr2_2:3244493-3244512 | None:intergenic | 35.0% | |
| TACGTTCATATGATGCAGAT+TGG | - | chr2_2:3244499-3244518 | Msa0231040:intron | 35.0% | |
| GTTACAGATAGTATCTTTGG+GGG | + | chr2_2:3244659-3244678 | None:intergenic | 35.0% | |
| CGTTACAGATAGTATCTTTG+GGG | + | chr2_2:3244660-3244679 | None:intergenic | 35.0% | |
| GTCGTTACAGATAGTATCTT+TGG | + | chr2_2:3244662-3244681 | None:intergenic | 35.0% | |
| TTTCAGTCTTTCACTATCCA+AGG | - | chr2_2:3244867-3244886 | Msa0231040:intron | 35.0% | |
| ATCCTAACTGGTCATAACTT+TGG | - | chr2_2:3244894-3244913 | Msa0231040:intron | 35.0% | |
| ATCAACACCCAAAACAATAG+TGG | - | chr2_2:3245118-3245137 | Msa0231040:intron | 35.0% | |
| TATATGCGACACAAATGATC+CGG | - | chr2_2:3245175-3245194 | Msa0231040:intron | 35.0% | |
| !!! | TTTCTTTTGGTGCCCATAAT+TGG | + | chr2_2:3245322-3245341 | None:intergenic | 35.0% |
| ! | TGAGGCTCATTGTTTTCTTT+TGG | + | chr2_2:3245335-3245354 | None:intergenic | 35.0% |
| TTGAGTGCCTATAATTGGTT+GGG | + | chr2_2:3245392-3245411 | None:intergenic | 35.0% | |
| AAGTCTTGAGTGCCTATAAT+TGG | + | chr2_2:3245397-3245416 | None:intergenic | 35.0% | |
| ATTATAGGCACTCAAGACTT+CGG | - | chr2_2:3245397-3245416 | Msa0231040:intron | 35.0% | |
| TTGAGTGCCTATAATTGGTT+GGG | + | chr2_2:3245392-3245411 | None:intergenic | 35.0% | |
| AAGTCTTGAGTGCCTATAAT+TGG | + | chr2_2:3245397-3245416 | None:intergenic | 35.0% | |
| ATTATAGGCACTCAAGACTT+CGG | - | chr2_2:3245397-3245416 | Msa0231040:intron | 35.0% | |
| ! | ATTTTGTGGAGTTCATATCC+AGG | + | chr2_2:3245506-3245525 | None:intergenic | 35.0% |
| ! | TTGTAAGTTGGAGTTACTGT+TGG | + | chr2_2:3245599-3245618 | None:intergenic | 35.0% |
| TATTGCTAAGGTAAGGGAAA+GGG | + | chr2_2:3245769-3245788 | None:intergenic | 35.0% | |
| ATATTGCTAAGGTAAGGGAA+AGG | + | chr2_2:3245770-3245789 | None:intergenic | 35.0% | |
| CTGCTATATTGCTAAGGTAA+GGG | + | chr2_2:3245775-3245794 | None:intergenic | 35.0% | |
| GAGTAGTATTTAGGAGCAAT+AGG | + | chr2_2:3245885-3245904 | None:intergenic | 35.0% | |
| TTGCTCCTAAATACTACTCA+AGG | - | chr2_2:3245886-3245905 | Msa0231040:CDS | 35.0% | |
| GTAGTAACTATACTTGTACC+AGG | + | chr2_2:3246000-3246019 | None:intergenic | 35.0% | |
| !! | AGTTTTAGTGGAAGTGATTC+TGG | + | chr2_2:3246051-3246070 | None:intergenic | 35.0% |
| CAATCTTGAGTGAGTTAGAA+TGG | + | chr2_2:3246301-3246320 | None:intergenic | 35.0% | |
| ACTCAAGATTGCTAGAACAT+TGG | - | chr2_2:3246310-3246329 | Msa0231040:intron | 35.0% | |
| !! | AACTACACTAAAAGGTGTCA+AGG | - | chr2_2:3246518-3246537 | Msa0231040:intron | 35.0% |
| !! | ACTACACTAAAAGGTGTCAA+GGG | - | chr2_2:3246519-3246538 | Msa0231040:intron | 35.0% |
| CTTGTGTGAAGTCTAATTGT+TGG | - | chr2_2:3246612-3246631 | Msa0231040:intron | 35.0% | |
| GTCTCGAAAGAGAAAGAAAA+TGG | + | chr2_2:3246647-3246666 | None:intergenic | 35.0% | |
| ! | AAGTATTGTGCCACTCATTT+AGG | + | chr2_2:3246805-3246824 | None:intergenic | 35.0% |
| ATAGCAACATGAGATCAAGA+TGG | - | chr2_2:3246916-3246935 | Msa0231040:intron | 35.0% | |
| TAGCAACATGAGATCAAGAT+GGG | - | chr2_2:3246917-3246936 | Msa0231040:intron | 35.0% | |
| !! | TGCATTGATAGTGTAAGATC+CGG | + | chr2_2:3247223-3247242 | None:intergenic | 35.0% |
| AACGAAATTGCATTTCTTGC+TGG | - | chr2_2:3247263-3247282 | Msa0231040:intron | 35.0% | |
| TACTTGGTTAGATAAGTAGG+GGG | - | chr2_2:3247375-3247394 | Msa0231040:intron | 35.0% | |
| GAAATTAGAAATTTGCGGGA+TGG | - | chr2_2:3247543-3247562 | Msa0231040:CDS | 35.0% | |
| ! | ACGATGATGATGAGCCAAAT+TGG | - | chr2_2:3240365-3240384 | Msa0231040:three_prime_UTR | 40.0% |
| ACTTGACTACTTGCAGAACA+GGG | + | chr2_2:3240397-3240416 | None:intergenic | 40.0% | |
| TACTTGACTACTTGCAGAAC+AGG | + | chr2_2:3240398-3240417 | None:intergenic | 40.0% | |
| TTCAGAAATTGAAGAGGAGG+AGG | + | chr2_2:3240447-3240466 | None:intergenic | 40.0% | |
| ACAATTGACAGTCCTTGAGA+AGG | + | chr2_2:3240562-3240581 | None:intergenic | 40.0% | |
| GTATGTTGCTCAAATTCCTC+AGG | - | chr2_2:3240607-3240626 | Msa0231040:three_prime_UTR | 40.0% | |
| ! | ATACTTCCAAGTTGGAAAGC+TGG | + | chr2_2:3240735-3240754 | None:intergenic | 40.0% |
| AGCTTTCCAACTTGGAAGTA+TGG | - | chr2_2:3240734-3240753 | Msa0231040:intron | 40.0% | |
| CTGAAACCATACTTCCAAGT+TGG | + | chr2_2:3240743-3240762 | None:intergenic | 40.0% | |
| ! | ACTTGGAAGTATGGTTTCAG+AGG | - | chr2_2:3240743-3240762 | Msa0231040:intron | 40.0% |
| TATCAAGTCCTACGATACCA+AGG | + | chr2_2:3240810-3240829 | None:intergenic | 40.0% | |
| TATACTCACTGAATTTGGCC+AGG | - | chr2_2:3240828-3240847 | Msa0231040:intron | 40.0% | |
| TGTGTTCAGAATGAGGGAAT+GGG | + | chr2_2:3241019-3241038 | None:intergenic | 40.0% | |
| TTGTGTTCAGAATGAGGGAA+TGG | + | chr2_2:3241020-3241039 | None:intergenic | 40.0% | |
| ! | GGTATAGTGTCTGAGATGTT+GGG | + | chr2_2:3241085-3241104 | None:intergenic | 40.0% |
| ATTTGTCACTAAGATAGGGG+GGG | + | chr2_2:3241106-3241125 | None:intergenic | 40.0% | |
| !!! | GAGGTGGTTTTTTCTTCATG+TGG | + | chr2_2:3241231-3241250 | None:intergenic | 40.0% |
| TAGTCAACACTTATCAGCCT+CGG | + | chr2_2:3241512-3241531 | None:intergenic | 40.0% | |
| TCTTTAACTCGTCAGAACTG+TGG | + | chr2_2:3241563-3241582 | None:intergenic | 40.0% | |
| AGCTTGCAAAAATGCCTCAA+TGG | - | chr2_2:3242053-3242072 | Msa0231040:intron | 40.0% | |
| ! | GGCTTTTCTTTTGTCCATTG+AGG | + | chr2_2:3242070-3242089 | None:intergenic | 40.0% |
| TTTCCTTCTTACTGTTCAGC+TGG | - | chr2_2:3242204-3242223 | Msa0231040:intron | 40.0% | |
| TTCCTTCTTACTGTTCAGCT+GGG | - | chr2_2:3242205-3242224 | Msa0231040:intron | 40.0% | |
| CGCGTAAAGCTTATAATCTC+TGG | + | chr2_2:3242776-3242795 | None:intergenic | 40.0% | |
| ATAAATGCTGCTGGTCAACA+TGG | + | chr2_2:3242845-3242864 | None:intergenic | 40.0% | |
| ! | CAATTAGGACCCCATTGATT+TGG | - | chr2_2:3242902-3242921 | Msa0231040:intron | 40.0% |
| AAGCAGAGTTCAATGGCAAT+AGG | + | chr2_2:3243023-3243042 | None:intergenic | 40.0% | |
| TATCACGAAGCAGAGTTCAA+TGG | + | chr2_2:3243030-3243049 | None:intergenic | 40.0% | |
| ATCTTGGACCTTGTAAGTAG+TGG | - | chr2_2:3243343-3243362 | Msa0231040:exon | 40.0% | |
| ! | TACGAAACTGCTGCTTCTTA+TGG | - | chr2_2:3243490-3243509 | Msa0231040:intron | 40.0% |
| TGAGATGCTTGAAAGATTGG+AGG | - | chr2_2:3243618-3243637 | Msa0231040:intron | 40.0% | |
| AAAGAAACTGGAGTTTGGGA+GGG | + | chr2_2:3243695-3243714 | None:intergenic | 40.0% | |
| AAAAGAAACTGGAGTTTGGG+AGG | + | chr2_2:3243696-3243715 | None:intergenic | 40.0% | |
| ! | TCCCCAACCCTATTCATTTT+AGG | - | chr2_2:3243850-3243869 | Msa0231040:CDS | 40.0% |
| CCCTAAAATGAATAGGGTTG+GGG | + | chr2_2:3243854-3243873 | None:intergenic | 40.0% | |
| ! | CCCCAACCCTATTCATTTTA+GGG | - | chr2_2:3243851-3243870 | Msa0231040:CDS | 40.0% |
| CCCCTAAAATGAATAGGGTT+GGG | + | chr2_2:3243855-3243874 | None:intergenic | 40.0% | |
| ! | CCCAACCCTATTCATTTTAG+GGG | - | chr2_2:3243852-3243871 | Msa0231040:CDS | 40.0% |
| TCCCCTAAAATGAATAGGGT+TGG | + | chr2_2:3243856-3243875 | None:intergenic | 40.0% | |
| !! | AACCCTATTCATTTTAGGGG+AGG | - | chr2_2:3243855-3243874 | Msa0231040:CDS | 40.0% |
| GATCCTCCCCTAAAATGAAT+AGG | + | chr2_2:3243861-3243880 | None:intergenic | 40.0% | |
| CTTTGGCACACATATGACTA+TGG | + | chr2_2:3244075-3244094 | None:intergenic | 40.0% | |
| AGTCATATGTGTGCCAAAGA+AGG | - | chr2_2:3244076-3244095 | Msa0231040:intron | 40.0% | |
| GACTTGTACAATGCCTTCTT+TGG | + | chr2_2:3244092-3244111 | None:intergenic | 40.0% | |
| GTCTATACAGCAATTGAGAG+CGG | - | chr2_2:3244109-3244128 | Msa0231040:intron | 40.0% | |
| GGAATATTGTTGGGAGTTTG+TGG | - | chr2_2:3244185-3244204 | Msa0231040:CDS | 40.0% | |
| AAAGGACAACAGGAATCACA+CGG | + | chr2_2:3244299-3244318 | None:intergenic | 40.0% | |
| GTTCATATGATGCAGATTGG+AGG | - | chr2_2:3244502-3244521 | Msa0231040:intron | 40.0% | |
| !! | AGACTGAAAGCCTTGTTCTT+AGG | + | chr2_2:3244856-3244875 | None:intergenic | 40.0% |
| GTCCAAAGTTATGACCAGTT+AGG | + | chr2_2:3244899-3244918 | None:intergenic | 40.0% | |
| ACTTGTGAGAAATCTCACCA+AGG | - | chr2_2:3244919-3244938 | Msa0231040:intron | 40.0% | |
| ! | TGATAACGACTTACAGTTGG+AGG | + | chr2_2:3244972-3244991 | None:intergenic | 40.0% |
| ! | GTCGAGTCCACTATTGTTTT+GGG | + | chr2_2:3245128-3245147 | None:intergenic | 40.0% |
| ! | TGTCGAGTCCACTATTGTTT+TGG | + | chr2_2:3245129-3245148 | None:intergenic | 40.0% |
| CGCATATAGGTCAACCTTTA+GGG | + | chr2_2:3245163-3245182 | None:intergenic | 40.0% | |
| TCGCATATAGGTCAACCTTT+AGG | + | chr2_2:3245164-3245183 | None:intergenic | 40.0% | |
| GGATCATTTGTGTCGCATAT+AGG | + | chr2_2:3245176-3245195 | None:intergenic | 40.0% | |
| ! | GAACTTTTGTCGCCCTATAA+GGG | + | chr2_2:3245210-3245229 | None:intergenic | 40.0% |
| ! | AGAACTTTTGTCGCCCTATA+AGG | + | chr2_2:3245211-3245230 | None:intergenic | 40.0% |
| TCCATAATTGGTTGGAGTCA+CGG | + | chr2_2:3245275-3245294 | None:intergenic | 40.0% | |
| GTGTGATGTCCATAATTGGT+TGG | + | chr2_2:3245283-3245302 | None:intergenic | 40.0% | |
| !! | TTTGGTGCCCATAATTGGTT+GGG | + | chr2_2:3245317-3245336 | None:intergenic | 40.0% |
| !!! | TTTTGGTGCCCATAATTGGT+TGG | + | chr2_2:3245318-3245337 | None:intergenic | 40.0% |
| TGAGTGCCTATAATTGGTTG+GGG | + | chr2_2:3245391-3245410 | None:intergenic | 40.0% | |
| CTTGAGTGCCTATAATTGGT+TGG | + | chr2_2:3245393-3245412 | None:intergenic | 40.0% | |
| TTATAGGCACTCAAGACTTC+GGG | - | chr2_2:3245398-3245417 | Msa0231040:intron | 40.0% | |
| CTTGAGTGCCTATAATTGGT+TGG | + | chr2_2:3245393-3245412 | None:intergenic | 40.0% | |
| TTATAGGCACTCAAGACTTC+GGG | - | chr2_2:3245398-3245417 | Msa0231040:intron | 40.0% | |
| TACATACATTCATAGTCGCG+TGG | + | chr2_2:3245476-3245495 | None:intergenic | 40.0% | |
| GAATGTATGTATGCAACACC+TGG | - | chr2_2:3245485-3245504 | Msa0231040:intron | 40.0% | |
| GCTGCTATATTGCTAAGGTA+AGG | + | chr2_2:3245776-3245795 | None:intergenic | 40.0% | |
| GCTATTAAGATTTCTACCCG+TGG | - | chr2_2:3245794-3245813 | Msa0231040:intron | 40.0% | |
| ! | TTGTGAAGGTGTAGATTCAG+TGG | + | chr2_2:3245828-3245847 | None:intergenic | 40.0% |
| CCTAAATACTACTCAAGGCT+CGG | - | chr2_2:3245891-3245910 | Msa0231040:CDS | 40.0% | |
| CAAAGACTCGAACTTGACTA+TGG | - | chr2_2:3246469-3246488 | Msa0231040:intron | 40.0% | |
| !! | AAAGGTGTCAAGGGCATAAA+AGG | - | chr2_2:3246528-3246547 | Msa0231040:intron | 40.0% |
| ! | AAGGTGTCAAGGGCATAAAA+GGG | - | chr2_2:3246529-3246548 | Msa0231040:intron | 40.0% |
| TAAGTGTATGATCGGTAGAG+AGG | - | chr2_2:3246712-3246731 | Msa0231040:intron | 40.0% | |
| CATTTAGGAAGGGAGTTAGT+GGG | + | chr2_2:3246790-3246809 | None:intergenic | 40.0% | |
| TCATTTAGGAAGGGAGTTAG+TGG | + | chr2_2:3246791-3246810 | None:intergenic | 40.0% | |
| TAACTCCCTTCCTAAATGAG+TGG | - | chr2_2:3246792-3246811 | Msa0231040:intron | 40.0% | |
| ! | TTGTGCCACTCATTTAGGAA+GGG | + | chr2_2:3246800-3246819 | None:intergenic | 40.0% |
| ! | ATTGTGCCACTCATTTAGGA+AGG | + | chr2_2:3246801-3246820 | None:intergenic | 40.0% |
| AGCAACATGAGATCAAGATG+GGG | - | chr2_2:3246918-3246937 | Msa0231040:intron | 40.0% | |
| !! | GCATTGATAGTGTAAGATCC+GGG | + | chr2_2:3247222-3247241 | None:intergenic | 40.0% |
| AGATATTCCCACTTCTGCAT+CGG | - | chr2_2:3247293-3247312 | Msa0231040:intron | 40.0% | |
| ATAAGATGACCAGCTCATTG+AGG | + | chr2_2:3247500-3247519 | None:intergenic | 40.0% | |
| GAACAGGGGTGAAACCAATT+TGG | + | chr2_2:3240382-3240401 | None:intergenic | 45.0% | |
| CTTGACTACTTGCAGAACAG+GGG | + | chr2_2:3240396-3240415 | None:intergenic | 45.0% | |
| GCGTAGCAGCAATTACTACT+TGG | + | chr2_2:3240422-3240441 | None:intergenic | 45.0% | |
| AGAAATTGAAGAGGAGGAGG+AGG | + | chr2_2:3240444-3240463 | None:intergenic | 45.0% | |
| CTTTGCTTGGCAAACCAAGA+CGG | + | chr2_2:3240514-3240533 | None:intergenic | 45.0% | |
| !! | TTGGTTTGCCAAGCAAAGGT+CGG | - | chr2_2:3240516-3240535 | Msa0231040:three_prime_UTR | 45.0% |
| CTTGAGAAGGTCGAGTGTAT+CGG | + | chr2_2:3240549-3240568 | None:intergenic | 45.0% | |
| GTTGCTCAAATTCCTCAGGT+AGG | - | chr2_2:3240611-3240630 | Msa0231040:three_prime_UTR | 45.0% | |
| TACGTTACGTTACCTACCTG+AGG | + | chr2_2:3240626-3240645 | None:intergenic | 45.0% | |
| TACACTCCAGCTTTCCAACT+TGG | - | chr2_2:3240726-3240745 | Msa0231040:intron | 45.0% | |
| TTATCCGGAGATCTTGACCT+TGG | - | chr2_2:3240790-3240809 | Msa0231040:intron | 45.0% | |
| GATACCAAGGTCAAGATCTC+CGG | + | chr2_2:3240797-3240816 | None:intergenic | 45.0% | |
| GATCTTGACCTTGGTATCGT+AGG | - | chr2_2:3240799-3240818 | Msa0231040:intron | 45.0% | |
| TCTCCGTTACGTACTACATG+TGG | - | chr2_2:3240944-3240963 | Msa0231040:intron | 45.0% | |
| GAATGGGCGCTATGTCTAAT+AGG | + | chr2_2:3241003-3241022 | None:intergenic | 45.0% | |
| ! | GGGTATAGTGTCTGAGATGT+TGG | + | chr2_2:3241086-3241105 | None:intergenic | 45.0% |
| !! | TTCTTTGAAGCACCCATACC+CGG | - | chr2_2:3241637-3241656 | Msa0231040:intron | 45.0% |
| TTTACATGAAGCCCGGGTAT+GGG | + | chr2_2:3241652-3241671 | None:intergenic | 45.0% | |
| ! | TTTTACATGAAGCCCGGGTA+TGG | + | chr2_2:3241653-3241672 | None:intergenic | 45.0% |
| GGTTCCAAGCAGGAAAATTG+TGG | + | chr2_2:3241791-3241810 | None:intergenic | 45.0% | |
| GGAAAAGTAAGGTTCCAAGC+AGG | + | chr2_2:3241801-3241820 | None:intergenic | 45.0% | |
| CGATCTTATCATTGTGCACG+AGG | - | chr2_2:3241869-3241888 | Msa0231040:intron | 45.0% | |
| TATCATTGTGCACGAGGCTT+TGG | - | chr2_2:3241875-3241894 | Msa0231040:intron | 45.0% | |
| AATCCAGTTGCAACTCTCAG+AGG | + | chr2_2:3242091-3242110 | None:intergenic | 45.0% | |
| GATAGCTATTGGGGTTTGGA+AGG | - | chr2_2:3242416-3242435 | Msa0231040:intron | 45.0% | |
| CTGGTTCATTTGAAAGGAGG+AGG | - | chr2_2:3242948-3242967 | Msa0231040:intron | 45.0% | |
| TTTGTTAGACTATCGAGCCC+AGG | - | chr2_2:3242989-3243008 | Msa0231040:intron | 45.0% | |
| GAACTCTGCTTCGTGATAAC+TGG | - | chr2_2:3243032-3243051 | Msa0231040:intron | 45.0% | |
| CAGCATCAACTAGATGGAGA+TGG | + | chr2_2:3243239-3243258 | None:intergenic | 45.0% | |
| GGGAATTGCTGATGCTATCT+TGG | - | chr2_2:3243327-3243346 | Msa0231040:three_prime_UTR | 45.0% | |
| !!! | TGGAACTGTTTTGGAAAGCC+AGG | - | chr2_2:3243405-3243424 | Msa0231040:CDS | 45.0% |
| ! | AAAGATTGGAGGCACATCTG+AGG | - | chr2_2:3243629-3243648 | Msa0231040:intron | 45.0% |
| ! | AAGATTGGAGGCACATCTGA+GGG | - | chr2_2:3243630-3243649 | Msa0231040:intron | 45.0% |
| AAGAAACTGGAGTTTGGGAG+GGG | + | chr2_2:3243694-3243713 | None:intergenic | 45.0% | |
| CAGGTCACTGCAAATATGAG+AGG | - | chr2_2:3243743-3243762 | Msa0231040:intron | 45.0% | |
| ! | AGTACTGAGCCAACCATCAT+TGG | - | chr2_2:3243793-3243812 | Msa0231040:intron | 45.0% |
| CAGAAAACGGGACTTACAGT+GGG | + | chr2_2:3244017-3244036 | None:intergenic | 45.0% | |
| TCCATCACGCTTGCAGAAAA+CGG | + | chr2_2:3244030-3244049 | None:intergenic | 45.0% | |
| ! | TTTCTGCAAGCGTGATGGAA+AGG | - | chr2_2:3244031-3244050 | Msa0231040:intron | 45.0% |
| GTGTGATTCCTGTTGTCCTT+TGG | - | chr2_2:3244298-3244317 | Msa0231040:intron | 45.0% | |
| GAACGTAGTCAACAGGAAAC+TGG | + | chr2_2:3244486-3244505 | None:intergenic | 45.0% | |
| TTGATGAGGAAACTCCCAGA+TGG | - | chr2_2:3244560-3244579 | Msa0231040:CDS | 45.0% | |
| GTCCAAGTTTAGAAAGGAGC+TGG | + | chr2_2:3244588-3244607 | None:intergenic | 45.0% | |
| ! | AGATAGTATCTTTGGGGGTG+GGG | + | chr2_2:3244654-3244673 | None:intergenic | 45.0% |
| ! | CAGATAGTATCTTTGGGGGT+GGG | + | chr2_2:3244655-3244674 | None:intergenic | 45.0% |
| ! | ACAGATAGTATCTTTGGGGG+TGG | + | chr2_2:3244656-3244675 | None:intergenic | 45.0% |
| ATCCAAGGACACATCCTAAC+TGG | - | chr2_2:3244882-3244901 | Msa0231040:intron | 45.0% | |
| CACCAAAGGTCCACATATCT+CGG | - | chr2_2:3244944-3244963 | Msa0231040:intron | 45.0% | |
| CCTATAAGGGAGGTGATATC+CGG | + | chr2_2:3245197-3245216 | None:intergenic | 45.0% | |
| CGGATATCACCTCCCTTATA+GGG | - | chr2_2:3245195-3245214 | Msa0231040:intron | 45.0% | |
| ! | CACGGTGGAGTGTTCATAAT+TGG | + | chr2_2:3245257-3245276 | None:intergenic | 45.0% |
| ATAATTGGTTGGAGTCACGG+TGG | + | chr2_2:3245272-3245291 | None:intergenic | 45.0% | |
| ACCGTGACTCCAACCAATTA+TGG | - | chr2_2:3245271-3245290 | Msa0231040:intron | 45.0% | |
| GGGTGTGTGATGTCCATAAT+TGG | + | chr2_2:3245287-3245306 | None:intergenic | 45.0% | |
| TTCGGGTCCCAACCAATTAT+AGG | - | chr2_2:3245415-3245434 | Msa0231040:intron | 45.0% | |
| TTCGGGTCCCAACCAATTAT+GGG | - | chr2_2:3245415-3245434 | Msa0231040:intron | 45.0% | |
| TAATCTGTGTCTCTAGCAGG+TGG | + | chr2_2:3245574-3245593 | None:intergenic | 45.0% | |
| GTGTAATCTGTGTCTCTAGC+AGG | + | chr2_2:3245577-3245596 | None:intergenic | 45.0% | |
| ATTCAGTGGAGCAAAGACCA+CGG | + | chr2_2:3245814-3245833 | None:intergenic | 45.0% | |
| GGAGCAATAGGAATAGGAGT+TGG | + | chr2_2:3245873-3245892 | None:intergenic | 45.0% | |
| CCGAGCCTTGAGTAGTATTT+AGG | + | chr2_2:3245894-3245913 | None:intergenic | 45.0% | |
| GAGAGAAAGAGAACCAGAGA+GGG | + | chr2_2:3246671-3246690 | None:intergenic | 45.0% | |
| TGAGAGAAAGAGAACCAGAG+AGG | + | chr2_2:3246672-3246691 | None:intergenic | 45.0% | |
| AACATGAGATCAAGATGGGG+AGG | - | chr2_2:3246921-3246940 | Msa0231040:intron | 45.0% | |
| TTGGTTAGATAAGTAGGGGG+TGG | - | chr2_2:3247378-3247397 | Msa0231040:CDS | 45.0% | |
| TGGTTAGATAAGTAGGGGGT+GGG | - | chr2_2:3247379-3247398 | Msa0231040:CDS | 45.0% | |
| !! | AATTATAAATTATAAAGTAT+AGG | - | chr2_2:3242710-3242729 | Msa0231040:intron | 5.0% |
| AAGACGGATCTCTTTCCTGG+CGG | + | chr2_2:3240498-3240517 | None:intergenic | 50.0% | |
| ACCAAGACGGATCTCTTTCC+TGG | + | chr2_2:3240501-3240520 | None:intergenic | 50.0% | |
| !! | CGTCTTGGTTTGCCAAGCAA+AGG | - | chr2_2:3240512-3240531 | Msa0231040:three_prime_UTR | 50.0% |
| GAAGACATCCGACCTTTGCT+TGG | + | chr2_2:3240527-3240546 | None:intergenic | 50.0% | |
| CGATACACTCGACCTTCTCA+AGG | - | chr2_2:3240547-3240566 | Msa0231040:three_prime_UTR | 50.0% | |
| ! | TTTTTGCAGACACGCTGACC+TGG | + | chr2_2:3240849-3240868 | None:intergenic | 50.0% |
| CTAGGGGTCTGCCAATTTAG+AGG | + | chr2_2:3241250-3241269 | None:intergenic | 50.0% | |
| ! | TGTCGCTTCACTTGCCAAGT+TGG | + | chr2_2:3241400-3241419 | None:intergenic | 50.0% |
| !! | TCTTTGAAGCACCCATACCC+GGG | - | chr2_2:3241638-3241657 | Msa0231040:intron | 50.0% |
| ! | AAGCCTCTGAGAGTTGCAAC+TGG | - | chr2_2:3242085-3242104 | Msa0231040:intron | 50.0% |
| GACCCAGCTGAACAGTAAGA+AGG | + | chr2_2:3242210-3242229 | None:intergenic | 50.0% | |
| ! | GTGGCATTTTCGACTGCTGA+TGG | - | chr2_2:3242262-3242281 | Msa0231040:intron | 50.0% |
| CAAAGACTATCTCTCACCGC+AGG | + | chr2_2:3242304-3242323 | None:intergenic | 50.0% | |
| TGGCAGCAGCATCAACTAGA+TGG | + | chr2_2:3243245-3243264 | None:intergenic | 50.0% | |
| GCGAGCAGGAAATCGATGAT+TGG | - | chr2_2:3243568-3243587 | Msa0231040:intron | 50.0% | |
| TATGAGAGGAAGCAGTGCAG+AGG | - | chr2_2:3243757-3243776 | Msa0231040:intron | 50.0% | |
| ! | TGAGCCAACCATCATTGGCT+GGG | - | chr2_2:3243798-3243817 | Msa0231040:intron | 50.0% |
| ATCCTCGGTTGTCTATCTGC+AGG | - | chr2_2:3243989-3244008 | Msa0231040:intron | 50.0% | |
| TCCTCGGTTGTCTATCTGCA+GGG | - | chr2_2:3243990-3244009 | Msa0231040:intron | 50.0% | |
| GCAGAAAACGGGACTTACAG+TGG | + | chr2_2:3244018-3244037 | None:intergenic | 50.0% | |
| CCATCACGCTTGCAGAAAAC+GGG | + | chr2_2:3244029-3244048 | None:intergenic | 50.0% | |
| TCATGCTTGTCGCACACCAA+AGG | + | chr2_2:3244317-3244336 | None:intergenic | 50.0% | |
| ATGATGCAGATTGGAGGCAG+CGG | - | chr2_2:3244508-3244527 | Msa0231040:intron | 50.0% | |
| CGCCAGCTCCTTTCTAAACT+TGG | - | chr2_2:3244583-3244602 | Msa0231040:CDS | 50.0% | |
| GACCAGTTAGGATGTGTCCT+TGG | + | chr2_2:3244887-3244906 | None:intergenic | 50.0% | |
| CTCCGAGATATGTGGACCTT+TGG | + | chr2_2:3244949-3244968 | None:intergenic | 50.0% | |
| ACACTTGCACGACACCCTAA+AGG | - | chr2_2:3245146-3245165 | Msa0231040:intron | 50.0% | |
| CCGGATATCACCTCCCTTAT+AGG | - | chr2_2:3245194-3245213 | Msa0231040:intron | 50.0% | |
| ! | CTTTTGTCGCCCTATAAGGG+AGG | + | chr2_2:3245207-3245226 | None:intergenic | 50.0% |
| TATGGACATCACACACCCCA+CGG | - | chr2_2:3245289-3245308 | Msa0231040:intron | 50.0% | |
| ATAATTGGTTGGGACCCGTG+GGG | + | chr2_2:3245307-3245326 | None:intergenic | 50.0% | |
| CATAATTGGTTGGGACCCGT+GGG | + | chr2_2:3245308-3245327 | None:intergenic | 50.0% | |
| CACGGGTCCCAACCAATTAT+GGG | - | chr2_2:3245307-3245326 | Msa0231040:intron | 50.0% | |
| GACGAGCCCCAACCAATTAT+AGG | - | chr2_2:3245382-3245401 | Msa0231040:intron | 50.0% | |
| CTTCGGGTCCCAACCAATTA+TGG | - | chr2_2:3245414-3245433 | Msa0231040:intron | 50.0% | |
| CGTGGTGCCCATAATTGGTT+GGG | + | chr2_2:3245458-3245477 | None:intergenic | 50.0% | |
| TTCAGTGGAGCAAAGACCAC+GGG | + | chr2_2:3245813-3245832 | None:intergenic | 50.0% | |
| TTAGGAAGGGAGTTAGTGGG+AGG | + | chr2_2:3246787-3246806 | None:intergenic | 50.0% | |
| CTACAAGCCGATGCAGAAGT+GGG | + | chr2_2:3247303-3247322 | None:intergenic | 50.0% | |
| TTAGATAAGTAGGGGGTGGG+AGG | - | chr2_2:3247382-3247401 | Msa0231040:CDS | 50.0% | |
| TTCCACCTACCTCAATGAGC+TGG | - | chr2_2:3247488-3247507 | Msa0231040:CDS | 50.0% | |
| GATGACCAGCTCATTGAGGT+AGG | + | chr2_2:3247496-3247515 | None:intergenic | 50.0% | |
| CGGAGACTGGGCTTCCATTA+AGG | + | chr2_2:3240478-3240497 | None:intergenic | 55.0% | |
| TCTCTTTCCTGGCGGAGACT+GGG | + | chr2_2:3240490-3240509 | None:intergenic | 55.0% | |
| ATCTCTTTCCTGGCGGAGAC+TGG | + | chr2_2:3240491-3240510 | None:intergenic | 55.0% | |
| GCCAGGAAAGAGATCCGTCT+TGG | - | chr2_2:3240497-3240516 | Msa0231040:three_prime_UTR | 55.0% | |
| GGGGTCTGCCAATTTAGAGG+TGG | + | chr2_2:3241247-3241266 | None:intergenic | 55.0% | |
| TTCACTGACAACTCCTGCCG+AGG | - | chr2_2:3241492-3241511 | Msa0231040:intron | 55.0% | |
| CAACACTTATCAGCCTCGGC+AGG | + | chr2_2:3241508-3241527 | None:intergenic | 55.0% | |
| !! | GTGCACGAGGCTTTGGAGTA+TGG | - | chr2_2:3241882-3241901 | Msa0231040:intron | 55.0% |
| TTCGACTGCTGATGGAGCAC+TGG | - | chr2_2:3242270-3242289 | Msa0231040:intron | 55.0% | |
| AGGAAGCAGTGCAGAGGAAG+TGG | - | chr2_2:3243763-3243782 | Msa0231040:intron | 55.0% | |
| CTGAGCCAACCATCATTGGC+TGG | - | chr2_2:3243797-3243816 | Msa0231040:intron | 55.0% | |
| GCAACCCAGCCAATGATGGT+TGG | + | chr2_2:3243805-3243824 | None:intergenic | 55.0% | |
| ! | ACCATCATTGGCTGGGTTGC+AGG | - | chr2_2:3243805-3243824 | Msa0231040:intron | 55.0% |
| ACCTGCAACCCAGCCAATGA+TGG | + | chr2_2:3243809-3243828 | None:intergenic | 55.0% | |
| TCCCTGCAGATAGACAACCG+AGG | + | chr2_2:3243994-3244013 | None:intergenic | 55.0% | |
| ! | CCCGTTTTCTGCAAGCGTGA+TGG | - | chr2_2:3244026-3244045 | Msa0231040:intron | 55.0% |
| GTCGCACACCAAAGGACAAC+AGG | + | chr2_2:3244309-3244328 | None:intergenic | 55.0% | |
| ATCTCACCAAGGCGCACCAA+AGG | - | chr2_2:3244930-3244949 | Msa0231040:intron | 55.0% | |
| GTTGGAGGCTCCGAGATATG+TGG | + | chr2_2:3244957-3244976 | None:intergenic | 55.0% | |
| ATGGACATCACACACCCCAC+GGG | - | chr2_2:3245290-3245309 | Msa0231040:intron | 55.0% | |
| CCATAATTGGTTGGGACCCG+TGG | + | chr2_2:3245309-3245328 | None:intergenic | 55.0% | |
| CCACGGGTCCCAACCAATTA+TGG | - | chr2_2:3245306-3245325 | Msa0231040:intron | 55.0% | |
| GCGTGGTGCCCATAATTGGT+TGG | + | chr2_2:3245459-3245478 | None:intergenic | 55.0% | |
| AGTCGCGTGGTGCCCATAAT+TGG | + | chr2_2:3245463-3245482 | None:intergenic | 55.0% | |
| CTCTTTCGAGACTCCCTCTC+TGG | - | chr2_2:3246655-3246674 | Msa0231040:intron | 55.0% | |
| CCTACAAGCCGATGCAGAAG+TGG | + | chr2_2:3247304-3247323 | None:intergenic | 55.0% | |
| !! | CCACTTCTGCATCGGCTTGT+AGG | - | chr2_2:3247301-3247320 | Msa0231040:intron | 55.0% |
| GACCAGCTCATTGAGGTAGG+TGG | + | chr2_2:3247493-3247512 | None:intergenic | 55.0% | |
| !! | GACTGCTGATGGAGCACTGG+AGG | - | chr2_2:3242273-3242292 | Msa0231040:intron | 60.0% |
| ACTATCGAGCCCAGGTCTCG+AGG | - | chr2_2:3242997-3243016 | Msa0231040:intron | 60.0% | |
| GGCAATAGGCCTCGAGACCT+GGG | + | chr2_2:3243009-3243028 | None:intergenic | 60.0% | |
| TGGCAATAGGCCTCGAGACC+TGG | + | chr2_2:3243010-3243029 | None:intergenic | 60.0% | |
| AGGCTGCTCTTGTTGCGAGC+AGG | - | chr2_2:3243554-3243573 | Msa0231040:intron | 60.0% | |
| GAGGCACATCTGAGGGCGAT+GGG | - | chr2_2:3243637-3243656 | Msa0231040:intron | 60.0% | |
| AGGCACATCTGAGGGCGATG+GGG | - | chr2_2:3243638-3243657 | Msa0231040:intron | 60.0% | |
| GAAAGGAGCTGGCGCCATCT+GGG | + | chr2_2:3244577-3244596 | None:intergenic | 60.0% | |
| AGAAAGGAGCTGGCGCCATC+TGG | + | chr2_2:3244578-3244597 | None:intergenic | 60.0% | |
| ! | TGTGGACCTTTGGTGCGCCT+TGG | + | chr2_2:3244939-3244958 | None:intergenic | 60.0% |
| ATGGAAGCCCAGTCTCCGCC+AGG | - | chr2_2:3240480-3240499 | Msa0231040:three_prime_UTR | 65.0% | |
| ! | AGCACTGGAGGCAGCTCCTG+CGG | - | chr2_2:3242285-3242304 | Msa0231040:intron | 65.0% |
| ! | GGAGGCACATCTGAGGGCGA+TGG | - | chr2_2:3243636-3243655 | Msa0231040:intron | 65.0% |
| GAGGGCGATGGGGCAGTTCA+CGG | - | chr2_2:3243648-3243667 | Msa0231040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 3240359 | 3247609 | 3240359 | ID=Msa0231040;Name=Msa0231040 |
| chr2_2 | mRNA | 3240359 | 3247609 | 3240359 | ID=Msa0231040-mRNA-1;Parent=Msa0231040;Name=Msa0231040-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.9|0.90|1|0.6|0.72|11|433|372 |
| chr2_2 | exon | 3240359 | 3240732 | 3240359 | ID=Msa0231040-mRNA-1:exon:1237;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3243297 | 3243451 | 3243297 | ID=Msa0231040-mRNA-1:exon:1236;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3243838 | 3243957 | 3243838 | ID=Msa0231040-mRNA-1:exon:1235;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3244142 | 3244222 | 3244142 | ID=Msa0231040-mRNA-1:exon:1234;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3244299 | 3244412 | 3244299 | ID=Msa0231040-mRNA-1:exon:1233;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3244542 | 3244643 | 3244542 | ID=Msa0231040-mRNA-1:exon:1232;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3245662 | 3245745 | 3245662 | ID=Msa0231040-mRNA-1:exon:1231;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3245851 | 3245958 | 3245851 | ID=Msa0231040-mRNA-1:exon:1230;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3246042 | 3246107 | 3246042 | ID=Msa0231040-mRNA-1:exon:1229;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3247119 | 3247232 | 3247119 | ID=Msa0231040-mRNA-1:exon:1228;Parent=Msa0231040-mRNA-1 |
| chr2_2 | exon | 3247376 | 3247609 | 3247376 | ID=Msa0231040-mRNA-1:exon:1227;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3247376 | 3247609 | 3247376 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3247119 | 3247232 | 3247119 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3246042 | 3246107 | 3246042 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3245851 | 3245958 | 3245851 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3245662 | 3245745 | 3245662 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3244542 | 3244643 | 3244542 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3244299 | 3244412 | 3244299 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3244142 | 3244222 | 3244142 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3243838 | 3243957 | 3243838 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | CDS | 3243356 | 3243451 | 3243356 | ID=Msa0231040-mRNA-1:cds;Parent=Msa0231040-mRNA-1 |
| chr2_2 | three_prime_UTR | 3243297 | 3243355 | 3243297 | ID=Msa0231040-mRNA-1:three_prime_utr;Parent=Msa0231040-mRNA-1 |
| chr2_2 | three_prime_UTR | 3240359 | 3240732 | 3240359 | ID=Msa0231040-mRNA-1:three_prime_utr;Parent=Msa0231040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
