AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515090 MtrunA17_Chr3g0123991 98.772 570 7 0 1 570 1 570 0.0 1183
Msa0515090 MtrunA17_Chr5g0430381 78.058 556 122 0 1 556 1 556 0.0 940
Msa0515090 MtrunA17_Chr3g0105311 74.692 569 141 2 1 566 1 569 0.0 915
Msa0515090 MtrunA17_Chr5g0429171 77.083 48 11 0 509 556 30 77 7.09e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515090 AT5G10240.1 85.379 554 81 0 1 554 1 554 0.0 1023
Msa0515090 AT5G65010.1 85.636 550 79 0 1 550 1 550 0.0 1020
Msa0515090 AT5G65010.2 85.481 551 79 1 1 550 1 551 0.0 1016
Msa0515090 AT5G10240.2 84.838 554 83 1 1 554 1 553 0.0 1012
Msa0515090 AT3G47340.1 75.398 565 138 1 1 565 1 564 0.0 935
Msa0515090 AT3G47340.2 76.575 508 119 0 1 508 1 508 0.0 857
Msa0515090 AT3G47340.3 77.458 417 94 0 1 417 1 417 0.0 716
Msa0515090 AT3G47340.4 77.815 302 67 0 116 417 1 302 0.0 522

Find 154 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATTACCCCTCTTTATT+TGG 0.114873 3_4:+66134925 Msa0515090:CDS
CAGCAGGCTAATAATATTTA+TGG 0.142182 3_4:+66139157 Msa0515090:three_prime_UTR
CCAAGCCGAAGTTGATTTAT+TGG 0.156555 3_4:-66137811 None:intergenic
CCAAGTACAACCATGCTTTA+AGG 0.164598 3_4:+66139121 Msa0515090:three_prime_UTR
ATACAAACCTTTGGCAAATA+TGG 0.166150 3_4:-66138300 None:intergenic
GTTCTATGGCATTAGGTTAA+TGG 0.192017 3_4:+66134623 Msa0515090:intron
TTCTCTATCCTTTCAATATC+AGG 0.209485 3_4:-66138240 None:intergenic
GAAGGTTCAGATGAAATATT+TGG 0.221785 3_4:+66137562 Msa0515090:CDS
CAAATCATTGGGAGTGAAAA+TGG 0.232355 3_4:+66137528 Msa0515090:CDS
TTGGACTGATGGGCAAATTT+AGG 0.235413 3_4:-66139225 None:intergenic
TACCCCTCTTTATTTGGGTT+GGG 0.252968 3_4:+66134931 Msa0515090:CDS
GGCATTACCCCTCTTTATTT+GGG 0.262355 3_4:+66134926 Msa0515090:CDS
TTCTATGGCATTAGGTTAAT+GGG 0.266561 3_4:+66134624 Msa0515090:intron
CTTCCTTGTTAGGCGCCTTA+TGG 0.267987 3_4:-66137600 None:intergenic
GCTATTGTGGACCCTACTTC+TGG 0.276442 3_4:+66134460 Msa0515090:CDS
TGATGAAGCTCTTCCTTGTT+AGG 0.297491 3_4:-66137610 None:intergenic
TTCGATGATGCGAGCGCGTT+TGG 0.303802 3_4:-66134353 None:intergenic
TGCAGTGGCCAATCGATATT+TGG 0.316799 3_4:+66137054 Msa0515090:CDS
ATTGCTGCTCGTGATGCTAT+TGG 0.320060 3_4:+66134905 Msa0515090:CDS
TGTGATTAGTATGAAGAATA+TGG 0.322666 3_4:+66134812 Msa0515090:intron
CAATAAATCAACTTCGGCTT+GGG 0.326748 3_4:+66137812 Msa0515090:CDS
TATCGATCCGGAGTGGAAAA+TGG 0.332343 3_4:+66137890 Msa0515090:CDS
CGAACTTCATTTCACAGTTC+AGG 0.340310 3_4:+66137305 Msa0515090:CDS
CCTTAAAGCATGGTTGTACT+TGG 0.352664 3_4:-66139121 None:intergenic
AAATGTATATATCTGACTTC+GGG 0.353875 3_4:+66139031 Msa0515090:three_prime_UTR
TTACCCCTCTTTATTTGGGT+TGG 0.360345 3_4:+66134930 Msa0515090:CDS
GCATATATATTCCAGCAAAC+AGG 0.371801 3_4:+66136077 Msa0515090:CDS
CAATCCAGCATGGTCTTTAG+AGG 0.380651 3_4:-66139003 None:intergenic
AGAGGCACGTGTACCGTTCT+TGG 0.383283 3_4:+66137839 Msa0515090:CDS
ACCCCTCTTTATTTGGGTTG+GGG 0.385041 3_4:+66134932 Msa0515090:CDS
TAAAACTACTGAAGAGAGTT+GGG 0.386734 3_4:+66139077 Msa0515090:three_prime_UTR
TGTTCTGTTGTCCGGAGGAC+TGG 0.389790 3_4:+66137015 Msa0515090:CDS
CCCTTTGGTGTTCTGTTGTC+CGG 0.394985 3_4:+66137007 Msa0515090:CDS
TTACATCATATGTTTCAATA+TGG 0.407697 3_4:-66137459 None:intergenic
CCTTCAGGTCGTGCCGCGCT+TGG 0.420882 3_4:+66138917 Msa0515090:CDS
GCTGCCAGGTCAACAGTTCC+AGG 0.421132 3_4:+66138824 Msa0515090:CDS
TACTTTCTGCATTGGTATAG+AGG 0.424643 3_4:+66137117 Msa0515090:CDS
CAGTTGGATTGATGGTTTGA+AGG 0.424749 3_4:+66138445 Msa0515090:CDS
GTCGGATACAGTTGGATTGA+TGG 0.430598 3_4:+66138437 Msa0515090:CDS
GTTGGATCATAGCGTGTTGA+TGG 0.432444 3_4:-66136294 None:intergenic
TCTTTAGAGGGATCCATTGT+CGG 0.443265 3_4:-66138990 None:intergenic
TACTGACGCTGCCCGTCAGT+GGG 0.449523 3_4:+66137081 Msa0515090:CDS
TATTGAAAGGATAGAGAAAT+GGG 0.451135 3_4:+66138245 Msa0515090:CDS
TACTGTCAAAACTACACAGT+TGG 0.453318 3_4:-66134243 None:intergenic
CATGCCACACTAGGGCCTCC+TGG 0.457389 3_4:-66138842 None:intergenic
ATATTGAAAGGATAGAGAAA+TGG 0.459884 3_4:+66138244 Msa0515090:CDS
TATTTGGGTTGGGGCCATGA+TGG 0.462409 3_4:+66134941 Msa0515090:CDS
ACTGTCAAAACTACACAGTT+GGG 0.462756 3_4:-66134242 None:intergenic
CTCATCACTTGTTGCTGCAG+TGG 0.463012 3_4:+66137039 Msa0515090:CDS
TACTGCAAAAGCTGTGGAAT+GGG 0.464980 3_4:+66138868 Msa0515090:CDS
AGGTTACCTGTATTTCCATA+AGG 0.465018 3_4:+66137585 Msa0515090:CDS
AAATCTCATCAATTTCGAAC+TGG 0.470336 3_4:+66134683 Msa0515090:CDS
GCAGTACTGCATGCCACACT+AGG 0.471392 3_4:-66138851 None:intergenic
TAGGCGCCTTATGGAAATAC+AGG 0.475864 3_4:-66137591 None:intergenic
AGAAGAGTTTGTTGATATGC+TGG 0.476984 3_4:+66134835 Msa0515090:CDS
ATACTGACGCTGCCCGTCAG+TGG 0.477781 3_4:+66137080 Msa0515090:CDS
AAAGAGGTAGCAAATTATCT+TGG 0.479356 3_4:+66137270 Msa0515090:CDS
AAAATGTATATATCTGACTT+CGG 0.479389 3_4:+66139030 Msa0515090:three_prime_UTR
AAGTTGATTTATTGGCTCTC+AGG 0.481018 3_4:-66137803 None:intergenic
CAATGCAAACCACTCCAATC+AGG 0.489191 3_4:-66134403 None:intergenic
ATAAAACTACTGAAGAGAGT+TGG 0.489833 3_4:+66139076 Msa0515090:three_prime_UTR
TGCTATCGATCTGAGTTAAA+CGG 0.497338 3_4:+66134177 None:intergenic
CTTTAGAGGGATCCATTGTC+GGG 0.500502 3_4:-66138989 None:intergenic
AGAGGTTGATCTCCAGAAGT+AGG 0.500746 3_4:-66134472 None:intergenic
GATACGTACGGTGACAATAA+CGG 0.505224 3_4:-66134512 None:intergenic
CATTTCAACAGGGTGCTGCC+AGG 0.506834 3_4:+66138810 Msa0515090:intron
CCAATAAATCAACTTCGGCT+TGG 0.506921 3_4:+66137811 Msa0515090:CDS
GTGCGGAATCTTAGCAGTGT+TGG 0.507911 3_4:+66134309 Msa0515090:CDS
TGCGGAATCTTAGCAGTGTT+GGG 0.508911 3_4:+66134310 Msa0515090:CDS
CAGTTACATACTTTCTGCAT+TGG 0.510357 3_4:+66137109 Msa0515090:CDS
AACTTCGGCTTGGGGTATAG+AGG 0.510802 3_4:+66137821 Msa0515090:CDS
TCATCAACGTCTTGCTATTG+TGG 0.511777 3_4:+66134447 Msa0515090:CDS
CACTGCCATGGATATCGATC+CGG 0.514410 3_4:+66137878 Msa0515090:CDS
TGCGACATAGAGGACCTGAT+TGG 0.528704 3_4:+66134389 Msa0515090:CDS
GTCTTGTCATAGTTGTAAAG+AGG 0.529718 3_4:-66134490 None:intergenic
GGAGTGAAAATGGTTCTGTC+TGG 0.532933 3_4:+66137538 Msa0515090:CDS
AAGTGATGAGTCCAGTCCTC+CGG 0.536076 3_4:-66137026 None:intergenic
TTTCTGGACATAAGAAACAT+TGG 0.539930 3_4:-66137502 None:intergenic
GCCTCCTGGAACTGTTGACC+TGG 0.540604 3_4:-66138828 None:intergenic
GGTTCAGATGAAATATTTGG+AGG 0.542536 3_4:+66137565 Msa0515090:CDS
AGCTGCATGAACACCAAGCG+CGG 0.545486 3_4:-66138930 None:intergenic
ATAAATTCTTTATCCAAGAA+CGG 0.547808 3_4:-66137852 None:intergenic
TGGCCCCAACCCAAATAAAG+AGG 0.550694 3_4:-66134935 None:intergenic
GATCCCTCTAAAGACCATGC+TGG 0.556208 3_4:+66138999 Msa0515090:exon
AAACACTCCTACCACAAAAG+AGG 0.557038 3_4:+66138611 Msa0515090:CDS
AAAATAAAAGAGCCCGACAA+TGG 0.557915 3_4:+66138977 Msa0515090:CDS
GAGGTTGATCTCCAGAAGTA+GGG 0.558161 3_4:-66134471 None:intergenic
TGTTCATGCAGCTGCATACA+AGG 0.562587 3_4:+66138940 Msa0515090:CDS
AACACTCCTACCACAAAAGA+GGG 0.564176 3_4:+66138612 Msa0515090:CDS
CCAAGCGCGGCACGACCTGA+AGG 0.564595 3_4:-66138917 None:intergenic
TTTGCGTGAGGCCTTTGAGA+GGG 0.566242 3_4:+66136320 Msa0515090:CDS
ATGATGACTGATGTACCCTT+TGG 0.566933 3_4:+66136992 Msa0515090:CDS
GGCCCCAACCCAAATAAAGA+GGG 0.568153 3_4:-66134934 None:intergenic
ACAAAGCGCATTGGACTGAT+GGG 0.569774 3_4:-66139235 None:intergenic
AGTTTGTTGATATGCTGGAT+GGG 0.570850 3_4:+66134840 Msa0515090:CDS
AATCTTAGCAGTGTTGGGTG+TGG 0.573813 3_4:+66134315 Msa0515090:CDS
AGAATTTATCAACACTGCCA+TGG 0.574909 3_4:+66137866 Msa0515090:CDS
TTGCTGGAATATATATGCCC+TGG 0.575185 3_4:-66136072 None:intergenic
AAGGCCTCACGCAAAACCGT+TGG 0.575646 3_4:-66136312 None:intergenic
TAACTGTGATCCCCACTGAC+GGG 0.578963 3_4:-66137092 None:intergenic
CCGGACAACAGAACACCAAA+GGG 0.583577 3_4:-66137007 None:intergenic
AGATAAAGCCTGATATTGAA+AGG 0.584487 3_4:+66138232 Msa0515090:intron
CATATATATTCCAGCAAACA+GGG 0.584924 3_4:+66136078 Msa0515090:CDS
AGTATCAGCCAAATATCGAT+TGG 0.585096 3_4:-66137062 None:intergenic
GGATTTGAGAGCCGCAAAAG+AGG 0.588975 3_4:+66137254 Msa0515090:CDS
GCGATGGTGTCGGATACAGT+TGG 0.589745 3_4:+66138429 Msa0515090:CDS
TTTCCATAAGGCGCCTAACA+AGG 0.590033 3_4:+66137597 Msa0515090:CDS
CAAAAGAGGGATACCACTAC+AGG 0.590975 3_4:+66138625 Msa0515090:CDS
GAGAGCCAATAAATCAACTT+CGG 0.592271 3_4:+66137806 Msa0515090:CDS
AATAAATCAACTTCGGCTTG+GGG 0.592392 3_4:+66137813 Msa0515090:CDS
GAGTTTGTTGATATGCTGGA+TGG 0.592504 3_4:+66134839 Msa0515090:CDS
GTAACTGTGATCCCCACTGA+CGG 0.594247 3_4:-66137093 None:intergenic
TTGCAGGAGGATTAAGAAGG+TGG 0.595137 3_4:+66136241 Msa0515090:intron
AGTTCTAAAACCTTAAAGCA+TGG 0.595523 3_4:-66139131 None:intergenic
GGAAGGTATAGATGCACTTG+AGG 0.595941 3_4:+66137426 Msa0515090:intron
ATCAACACGCTATGATCCAA+CGG 0.596803 3_4:+66136296 Msa0515090:CDS
GCATCATCGAATTGTCTCGC+AGG 0.596887 3_4:+66134365 Msa0515090:CDS
TCTCGCAGGTTGCGACATAG+AGG 0.597101 3_4:+66134379 Msa0515090:CDS
CCACTCCGGATCGATATCCA+TGG 0.600070 3_4:-66137883 None:intergenic
TGAGAATCCATATTTGCCAA+AGG 0.602556 3_4:+66138293 Msa0515090:CDS
AATCCAGCATGGTCTTTAGA+GGG 0.604010 3_4:-66139002 None:intergenic
AAAATGGTTCTGTCTGGAGA+AGG 0.606208 3_4:+66137544 Msa0515090:CDS
GGAATAGCTAACCCTCTCAA+AGG 0.609261 3_4:-66136331 None:intergenic
TCCGGACAACAGAACACCAA+AGG 0.611807 3_4:-66137008 None:intergenic
GTACTGCAAAAGCTGTGGAA+TGG 0.613846 3_4:+66138867 Msa0515090:CDS
GAACAGTTCAGCGATGGTGT+CGG 0.616755 3_4:+66138419 Msa0515090:CDS
GCAGCAGCCACATACCATCA+TGG 0.619188 3_4:-66134955 None:intergenic
GCACATATTGTACAGGCAGA+AGG 0.619788 3_4:+66138397 Msa0515090:intron
TCTTTGCAGGAGGATTAAGA+AGG 0.620740 3_4:+66136238 Msa0515090:intron
CAGTACTGCATGCCACACTA+GGG 0.621411 3_4:-66138850 None:intergenic
CAGAAGGAACAGTTCAGCGA+TGG 0.621633 3_4:+66138413 Msa0515090:CDS
CAAGCGCGGCACGACCTGAA+GGG 0.622971 3_4:-66138916 None:intergenic
TTATCAGATATACTAAAAGG+TGG 0.626788 3_4:+66139187 Msa0515090:three_prime_UTR
TTTGGTGTTCTGTTGTCCGG+AGG 0.633191 3_4:+66137010 Msa0515090:CDS
GAGTTAAACGGAGCTAAACA+AGG 0.634851 3_4:+66134189 Msa0515090:five_prime_UTR
TCTATGGCATTAGGTTAATG+GGG 0.644846 3_4:+66134625 Msa0515090:intron
TTGTTGGCAGCCGTCATGTG+CGG 0.647753 3_4:+66134292 Msa0515090:exon
CATAGAGGACCTGATTGGAG+TGG 0.648591 3_4:+66134394 Msa0515090:CDS
AAAACTACTGAAGAGAGTTG+GGG 0.650442 3_4:+66139078 Msa0515090:three_prime_UTR
AGTTCCAGGAGGCCCTAGTG+TGG 0.651099 3_4:+66138838 Msa0515090:CDS
CTGGAATATATATGCCCTGG+AGG 0.658198 3_4:-66136069 None:intergenic
CTGTGGAATGGGATGCAGCA+TGG 0.665004 3_4:+66138879 Msa0515090:CDS
TAGCAAGACGTTGATGAGCG+AGG 0.666348 3_4:-66134441 None:intergenic
TGCTAAGATTCCGCACATGA+CGG 0.669260 3_4:-66134302 None:intergenic
CCATGGATATCGATCCGGAG+TGG 0.674824 3_4:+66137883 Msa0515090:CDS
GCCCCAACCCAAATAAAGAG+GGG 0.687236 3_4:-66134933 None:intergenic
ACTGACGCTGCCCGTCAGTG+GGG 0.690660 3_4:+66137082 Msa0515090:CDS
GAACTGTGAAATGAAGTTCG+TGG 0.696854 3_4:-66137302 None:intergenic
GCCAGGTCAACAGTTCCAGG+AGG 0.705953 3_4:+66138827 Msa0515090:CDS
ATGCAGTACTGCAAAAGCTG+TGG 0.707096 3_4:+66138862 Msa0515090:CDS
ATTTGCTCTGAGAACCATGG+TGG 0.708717 3_4:-66136270 None:intergenic
GGAATTTGCTCTGAGAACCA+TGG 0.723639 3_4:-66136273 None:intergenic
GAAGGTGGTACAATCCACCA+TGG 0.728627 3_4:+66136256 Msa0515090:CDS
CTGTGAAATGAAGTTCGTGG+TGG 0.746248 3_4:-66137299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTACATAAAAATATG+GGG - chr3_4:66137679-66137698 None:intergenic 10.0%
!! TGAATTAGATATATCATTTA+TGG + chr3_4:66135961-66135980 Msa0515090:intron 15.0%
!!! AATTATGGTATATTACTTTT+CGG - chr3_4:66137645-66137664 None:intergenic 15.0%
!!! AATTTATTTTACAAGAAAAC+TGG - chr3_4:66138091-66138110 None:intergenic 15.0%
!!! TTCATGTTCAAATTTAAAAT+TGG - chr3_4:66138737-66138756 None:intergenic 15.0%
!! TAAAAAACATCAATCAGATT+TGG + chr3_4:66134264-66134283 Msa0515090:five_prime_UTR 20.0%
!! ACAGTTTAAAAAAATTACAC+AGG - chr3_4:66135144-66135163 None:intergenic 20.0%
!! TTCAAAGTCATACATTTAAT+TGG + chr3_4:66135217-66135236 Msa0515090:intron 20.0%
!!! TGAAGCTACAAATTTTATAT+AGG - chr3_4:66135309-66135328 None:intergenic 20.0%
!! TTTAGTACATTCACTTAAAA+GGG - chr3_4:66135657-66135676 None:intergenic 20.0%
!! ACATATCTGTATAAACATTA+AGG + chr3_4:66135728-66135747 Msa0515090:intron 20.0%
!! TTAGATATATCATTTATGGA+AGG + chr3_4:66135965-66135984 Msa0515090:intron 20.0%
!! TAGATATATCATTTATGGAA+GGG + chr3_4:66135966-66135985 Msa0515090:intron 20.0%
!! TTATAGACAAAATAAAAGTG+AGG - chr3_4:66136671-66136690 None:intergenic 20.0%
!! TTTACGTATAATTTCTCAAA+AGG - chr3_4:66136776-66136795 None:intergenic 20.0%
!! TAACCAAGAAAAAGTTAAAA+AGG - chr3_4:66136939-66136958 None:intergenic 20.0%
!! CATATAACTACTATTACTTA+TGG - chr3_4:66137193-66137212 None:intergenic 20.0%
!!! GGTAATCTAATATTCTATTT+TGG + chr3_4:66137393-66137412 Msa0515090:intron 20.0%
!! TTACATCATATGTTTCAATA+TGG - chr3_4:66137462-66137481 None:intergenic 20.0%
!! ATAAATTCTTTATCCAAGAA+CGG - chr3_4:66137855-66137874 None:intergenic 20.0%
!! TTGTAAAATAAATTTGTCTG+TGG + chr3_4:66138097-66138116 Msa0515090:intron 20.0%
!! TATCAAGTATATAATGTCAA+TGG - chr3_4:66138538-66138557 None:intergenic 20.0%
!! GACATTATATACTTGATAAA+TGG + chr3_4:66138540-66138559 Msa0515090:intron 20.0%
!!! TTCAAATTTAAAATTGGTCA+AGG - chr3_4:66138731-66138750 None:intergenic 20.0%
!! AAAATGTATATATCTGACTT+CGG + chr3_4:66139030-66139049 Msa0515090:three_prime_UTR 20.0%
!!! CTTTTATCAGATATACTAAA+AGG + chr3_4:66139184-66139203 Msa0515090:three_prime_UTR 20.0%
! TGTGATTAGTATGAAGAATA+TGG + chr3_4:66134812-66134831 Msa0515090:intron 25.0%
!! GCTTTAAATTGCACAATAAA+TGG - chr3_4:66135046-66135065 None:intergenic 25.0%
! CTTTAGTACATTCACTTAAA+AGG - chr3_4:66135658-66135677 None:intergenic 25.0%
! TACATTTCCTTGAAAAAACT+AGG - chr3_4:66135800-66135819 None:intergenic 25.0%
!! AGGCATTAATCTTTTACATT+CGG + chr3_4:66135860-66135879 Msa0515090:intron 25.0%
! TAAAGAGTTGTCTATACATT+TGG + chr3_4:66135909-66135928 Msa0515090:intron 25.0%
! TACATTTGGTTATGTATTCA+TGG + chr3_4:66135923-66135942 Msa0515090:intron 25.0%
!!! ATTATTTTGCAGGATCAATA+TGG + chr3_4:66135992-66136011 Msa0515090:intron 25.0%
!! AATTTATATCTTTTCCTCCA+GGG + chr3_4:66136055-66136074 Msa0515090:CDS 25.0%
! TTTACAAGAGTAACCATAAT+CGG - chr3_4:66136131-66136150 None:intergenic 25.0%
! AGTAAAATTTAGACAGTAGA+AGG - chr3_4:66136175-66136194 None:intergenic 25.0%
! ATATCATTTGCAACAAACTT+AGG + chr3_4:66136690-66136709 Msa0515090:intron 25.0%
!!! CATCCTTTTTAACTTTTTCT+TGG + chr3_4:66136933-66136952 Msa0515090:intron 25.0%
! AAGGTAAAATGGTAGATAAA+GGG - chr3_4:66137342-66137361 None:intergenic 25.0%
!!! TTCTATTTTGGCTATATATC+AGG + chr3_4:66137405-66137424 Msa0515090:intron 25.0%
! TCCAGAAAAATCAAATCATT+GGG + chr3_4:66137517-66137536 Msa0515090:CDS 25.0%
! ACACCAAAAACTTGAATAAA+CGG - chr3_4:66137740-66137759 None:intergenic 25.0%
! TTGTAACTTTACTTCTTTCT+TGG + chr3_4:66137915-66137934 Msa0515090:intron 25.0%
! AATTTGTCGTTAATTTCATG+AGG - chr3_4:66138208-66138227 None:intergenic 25.0%
! ATATTGAAAGGATAGAGAAA+TGG + chr3_4:66138244-66138263 Msa0515090:CDS 25.0%
! TATTGAAAGGATAGAGAAAT+GGG + chr3_4:66138245-66138264 Msa0515090:CDS 25.0%
!!! TTTTGAGAAGTTATTTCCAA+AGG + chr3_4:66138653-66138672 Msa0515090:CDS 25.0%
! AAATGTATATATCTGACTTC+GGG + chr3_4:66139031-66139050 Msa0515090:three_prime_UTR 25.0%
! TTATCAGATATACTAAAAGG+TGG + chr3_4:66139187-66139206 Msa0515090:three_prime_UTR 25.0%
!!! ATCAGATTTGGTTTTGTTGT+TGG + chr3_4:66134276-66134295 Msa0515090:five_prime_UTR 30.0%
GATAGAAGATAAGATACGTA+CGG - chr3_4:66134527-66134546 None:intergenic 30.0%
! TTGTCACATTTTCTGTTCTA+TGG + chr3_4:66134609-66134628 Msa0515090:intron 30.0%
! ATTTTCTGTTCTATGGCATT+AGG + chr3_4:66134616-66134635 Msa0515090:intron 30.0%
TTCTATGGCATTAGGTTAAT+GGG + chr3_4:66134624-66134643 Msa0515090:intron 30.0%
!!! GTTTCTGTCTCAATTTTTTG+TGG - chr3_4:66134661-66134680 None:intergenic 30.0%
AAATCTCATCAATTTCGAAC+TGG + chr3_4:66134683-66134702 Msa0515090:CDS 30.0%
! TCTTGTAAGTGTTTTCTAGA+AGG + chr3_4:66134730-66134749 Msa0515090:intron 30.0%
AATAAATGGTTCAATTCGAG+CGG - chr3_4:66135032-66135051 None:intergenic 30.0%
ATCATCTGACAATCACAATT+GGG - chr3_4:66135170-66135189 None:intergenic 30.0%
AATCATCTGACAATCACAAT+TGG - chr3_4:66135171-66135190 None:intergenic 30.0%
AACTCAAGTGAATGTACTAA+AGG + chr3_4:66135457-66135476 Msa0515090:intron 30.0%
TGTTTATACAGATATGTAGC+AGG - chr3_4:66135725-66135744 None:intergenic 30.0%
!!! AACATGTCCTAGTTTTTTCA+AGG + chr3_4:66135790-66135809 Msa0515090:intron 30.0%
! CAATTTATATCTTTTCCTCC+AGG + chr3_4:66136054-66136073 Msa0515090:CDS 30.0%
CATATATATTCCAGCAAACA+GGG + chr3_4:66136078-66136097 Msa0515090:CDS 30.0%
!!! ATTATTTTTACCCTGTTTGC+TGG - chr3_4:66136091-66136110 None:intergenic 30.0%
!!! CTCGTTATTTTTTCCGATTA+TGG + chr3_4:66136115-66136134 Msa0515090:intron 30.0%
AGTAGAAGGAGAAAAACAAA+TGG - chr3_4:66136161-66136180 None:intergenic 30.0%
TGTAAGTGTGTATCTTATCT+TGG - chr3_4:66136198-66136217 None:intergenic 30.0%
CAAACGATGAAATAACTCAA+TGG - chr3_4:66136365-66136384 None:intergenic 30.0%
CACAAAATGTTGTCAAATAG+CGG + chr3_4:66136499-66136518 Msa0515090:intron 30.0%
AATTCCAATCATGAGCTTAT+GGG - chr3_4:66136801-66136820 None:intergenic 30.0%
AAATTCCAATCATGAGCTTA+TGG - chr3_4:66136802-66136821 None:intergenic 30.0%
ATAAGCTCATGATTGGAATT+TGG + chr3_4:66136801-66136820 Msa0515090:intron 30.0%
CTTAGTATCAACTACATCAA+AGG - chr3_4:66136898-66136917 None:intergenic 30.0%
!!! ATAATTTGCTACCTCTTTTG+CGG - chr3_4:66137268-66137287 None:intergenic 30.0%
AAAGAGGTAGCAAATTATCT+TGG + chr3_4:66137270-66137289 Msa0515090:CDS 30.0%
CAAGGTAAAATGGTAGATAA+AGG - chr3_4:66137343-66137362 None:intergenic 30.0%
!!! ATTTTGGCTATATATCAGGA+AGG + chr3_4:66137409-66137428 Msa0515090:intron 30.0%
TTTCTGGACATAAGAAACAT+TGG - chr3_4:66137505-66137524 None:intergenic 30.0%
GTCCAGAAAAATCAAATCAT+TGG + chr3_4:66137516-66137535 Msa0515090:CDS 30.0%
!! TCCCAATGATTTGATTTTTC+TGG - chr3_4:66137521-66137540 None:intergenic 30.0%
GAAGGTTCAGATGAAATATT+TGG + chr3_4:66137562-66137581 Msa0515090:CDS 30.0%
!! TACCCGTTTATTCAAGTTTT+TGG + chr3_4:66137734-66137753 Msa0515090:intron 30.0%
CACCAAAAACTTGAATAAAC+GGG - chr3_4:66137739-66137758 None:intergenic 30.0%
AGATAAAGCCTGATATTGAA+AGG + chr3_4:66138232-66138251 Msa0515090:intron 30.0%
TTCTCTATCCTTTCAATATC+AGG - chr3_4:66138243-66138262 None:intergenic 30.0%
ATACAAACCTTTGGCAAATA+TGG - chr3_4:66138303-66138322 None:intergenic 30.0%
AGTTGATTGATACAAACCTT+TGG - chr3_4:66138312-66138331 None:intergenic 30.0%
!! TTTTTCAGCACATATTGTAC+AGG + chr3_4:66138390-66138409 Msa0515090:intron 30.0%
TATATACTTGATAAATGGCC+AGG + chr3_4:66138545-66138564 Msa0515090:intron 30.0%
ATGAACCATTTCATTTCAAC+AGG + chr3_4:66138799-66138818 Msa0515090:intron 30.0%
TGAACCATTTCATTTCAACA+GGG + chr3_4:66138800-66138819 Msa0515090:intron 30.0%
!!! CATTTTAAAACAATCCAGCA+TGG - chr3_4:66139016-66139035 None:intergenic 30.0%
ATAAAACTACTGAAGAGAGT+TGG + chr3_4:66139076-66139095 Msa0515090:three_prime_UTR 30.0%
TAAAACTACTGAAGAGAGTT+GGG + chr3_4:66139077-66139096 Msa0515090:three_prime_UTR 30.0%
!! AGTTCTAAAACCTTAAAGCA+TGG - chr3_4:66139134-66139153 None:intergenic 30.0%
CAGCAGGCTAATAATATTTA+TGG + chr3_4:66139157-66139176 Msa0515090:three_prime_UTR 30.0%
ACTGTCAAAACTACACAGTT+GGG - chr3_4:66134245-66134264 None:intergenic 35.0%
TACTGTCAAAACTACACAGT+TGG - chr3_4:66134246-66134265 None:intergenic 35.0%
GTCTTGTCATAGTTGTAAAG+AGG - chr3_4:66134493-66134512 None:intergenic 35.0%
GTTCTATGGCATTAGGTTAA+TGG + chr3_4:66134623-66134642 Msa0515090:intron 35.0%
TCTATGGCATTAGGTTAATG+GGG + chr3_4:66134625-66134644 Msa0515090:intron 35.0%
!! AGAAGAGTTTGTTGATATGC+TGG + chr3_4:66134835-66134854 Msa0515090:CDS 35.0%
!! AGTTTGTTGATATGCTGGAT+GGG + chr3_4:66134840-66134859 Msa0515090:CDS 35.0%
TCCATGTGCTATGCAATTAA+GGG - chr3_4:66135430-66135449 None:intergenic 35.0%
ATCCATGTGCTATGCAATTA+AGG - chr3_4:66135431-66135450 None:intergenic 35.0%
TCAAGTGAATGTACTAAAGG+AGG + chr3_4:66135460-66135479 Msa0515090:intron 35.0%
CAAGTGAATGTACTAAAGGA+GGG + chr3_4:66135461-66135480 Msa0515090:intron 35.0%
AAGTGAATGTACTAAAGGAG+GGG + chr3_4:66135462-66135481 Msa0515090:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG + chr3_4:66135503-66135522 Msa0515090:intron 35.0%
!!! TTACCCTGTTTTTAGACAAG+AGG - chr3_4:66135558-66135577 None:intergenic 35.0%
TCTTGTCTAAAAACAGGGTA+AGG + chr3_4:66135557-66135576 Msa0515090:intron 35.0%
! TTCCTCTACATTAGAAGCAT+CGG - chr3_4:66135772-66135791 None:intergenic 35.0%
GCATATATATTCCAGCAAAC+AGG + chr3_4:66136077-66136096 Msa0515090:CDS 35.0%
CAAAGACAGCAAAGTTTAAC+AGG - chr3_4:66136224-66136243 None:intergenic 35.0%
! TTAAACTTTGCTGTCTTTGC+AGG + chr3_4:66136225-66136244 Msa0515090:intron 35.0%
AATAACTCAATGGATGAGAC+AGG - chr3_4:66136355-66136374 None:intergenic 35.0%
!! GAGGATGCTTTAAAATTCCA+GGG - chr3_4:66136652-66136671 None:intergenic 35.0%
!! TGAGGATGCTTTAAAATTCC+AGG - chr3_4:66136653-66136672 None:intergenic 35.0%
GAGTGTTATGTCATAACTAG+AGG + chr3_4:66136712-66136731 Msa0515090:intron 35.0%
AATTCCCATAAGCTCATGAT+TGG + chr3_4:66136794-66136813 Msa0515090:intron 35.0%
GCTGATTACTATGTTCTAGT+TGG + chr3_4:66136825-66136844 Msa0515090:intron 35.0%
GTTATACTGTGATATCATGC+AGG + chr3_4:66136955-66136974 Msa0515090:intron 35.0%
AGTATCAGCCAAATATCGAT+TGG - chr3_4:66137065-66137084 None:intergenic 35.0%
CAGTTACATACTTTCTGCAT+TGG + chr3_4:66137109-66137128 Msa0515090:CDS 35.0%
! TACTTTCTGCATTGGTATAG+AGG + chr3_4:66137117-66137136 Msa0515090:CDS 35.0%
!! ACAGCTCATTTTAACCATGA+GGG - chr3_4:66137154-66137173 None:intergenic 35.0%
!! TACAGCTCATTTTAACCATG+AGG - chr3_4:66137155-66137174 None:intergenic 35.0%
! ACTTAATTTTCCCCCATTCA+GGG + chr3_4:66137225-66137244 Msa0515090:intron 35.0%
ATAAAAATCTCGTCTGCTCA+AGG - chr3_4:66137361-66137380 None:intergenic 35.0%
! GATTTTTATTGCTAGCTCGA+AGG + chr3_4:66137372-66137391 Msa0515090:intron 35.0%
CAAATCATTGGGAGTGAAAA+TGG + chr3_4:66137528-66137547 Msa0515090:CDS 35.0%
GGTTCAGATGAAATATTTGG+AGG + chr3_4:66137565-66137584 Msa0515090:CDS 35.0%
AGGTTACCTGTATTTCCATA+AGG + chr3_4:66137585-66137604 Msa0515090:CDS 35.0%
! ATAAACGGGTAAAAGTACAC+AGG - chr3_4:66137725-66137744 None:intergenic 35.0%
!! AAGTTGATTTATTGGCTCTC+AGG - chr3_4:66137806-66137825 None:intergenic 35.0%
GAGAGCCAATAAATCAACTT+CGG + chr3_4:66137806-66137825 Msa0515090:CDS 35.0%
CAATAAATCAACTTCGGCTT+GGG + chr3_4:66137812-66137831 Msa0515090:CDS 35.0%
! AATAAATCAACTTCGGCTTG+GGG + chr3_4:66137813-66137832 Msa0515090:CDS 35.0%
AGAATTTATCAACACTGCCA+TGG + chr3_4:66137866-66137885 Msa0515090:CDS 35.0%
! TACAATACCATTTTCCACTC+CGG - chr3_4:66137900-66137919 None:intergenic 35.0%
CTATAGGCTGTCTTATGATT+GGG + chr3_4:66137971-66137990 Msa0515090:intron 35.0%
CAATGTTCAATCAACAATGC+AGG - chr3_4:66138000-66138019 None:intergenic 35.0%
TGAGAATCCATATTTGCCAA+AGG + chr3_4:66138293-66138312 Msa0515090:CDS 35.0%
GTTATTCAGTTCAATGTCAC+AGG - chr3_4:66138499-66138518 None:intergenic 35.0%
!! GTTTTCAGGGTAAACAAAGT+TGG - chr3_4:66138595-66138614 None:intergenic 35.0%
TCTCAAAAATTGTCCTGTAG+TGG - chr3_4:66138641-66138660 None:intergenic 35.0%
TGGTCAAGGTTATGATGAAA+AGG - chr3_4:66138717-66138736 None:intergenic 35.0%
AAAATAAAAGAGCCCGACAA+TGG + chr3_4:66138977-66138996 Msa0515090:CDS 35.0%
AAAACTACTGAAGAGAGTTG+GGG + chr3_4:66139078-66139097 Msa0515090:three_prime_UTR 35.0%
GAGTTAAACGGAGCTAAACA+AGG + chr3_4:66134189-66134208 Msa0515090:five_prime_UTR 40.0%
!! TCATCAACGTCTTGCTATTG+TGG + chr3_4:66134447-66134466 Msa0515090:CDS 40.0%
GATACGTACGGTGACAATAA+CGG - chr3_4:66134515-66134534 None:intergenic 40.0%
!! GAGTTTGTTGATATGCTGGA+TGG + chr3_4:66134839-66134858 Msa0515090:CDS 40.0%
TGGCATTACCCCTCTTTATT+TGG + chr3_4:66134925-66134944 Msa0515090:CDS 40.0%
! GGCATTACCCCTCTTTATTT+GGG + chr3_4:66134926-66134945 Msa0515090:CDS 40.0%
! TTACCCCTCTTTATTTGGGT+TGG + chr3_4:66134930-66134949 Msa0515090:CDS 40.0%
! TACCCCTCTTTATTTGGGTT+GGG + chr3_4:66134931-66134950 Msa0515090:CDS 40.0%
!! CCAAAATGCATCTCTGGAAT+TGG - chr3_4:66135068-66135087 None:intergenic 40.0%
! CCAATTCCAGAGATGCATTT+TGG + chr3_4:66135065-66135084 Msa0515090:intron 40.0%
ACATGTCCAAAATGCATCTC+TGG - chr3_4:66135074-66135093 None:intergenic 40.0%
ACCCTTAATTGCATAGCACA+TGG + chr3_4:66135426-66135445 Msa0515090:intron 40.0%
ACAGCCTCTTGTCTAAAAAC+AGG + chr3_4:66135551-66135570 Msa0515090:intron 40.0%
CAGCCTCTTGTCTAAAAACA+GGG + chr3_4:66135552-66135571 Msa0515090:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr3_4:66135583-66135602 Msa0515090:intron 40.0%
ATTCACTTAAAAGGGCAACC+CGG - chr3_4:66135649-66135668 None:intergenic 40.0%
TAATGCCTGTGTATGCTAGA+GGG - chr3_4:66135848-66135867 None:intergenic 40.0%
TTAATGCCTGTGTATGCTAG+AGG - chr3_4:66135849-66135868 None:intergenic 40.0%
! TTCGGCAGTTGCATGATTTT+AGG + chr3_4:66135878-66135897 Msa0515090:intron 40.0%
TTGCTGGAATATATATGCCC+TGG - chr3_4:66136075-66136094 None:intergenic 40.0%
TCTTTGCAGGAGGATTAAGA+AGG + chr3_4:66136238-66136257 Msa0515090:intron 40.0%
ATCAACACGCTATGATCCAA+CGG + chr3_4:66136296-66136315 Msa0515090:CDS 40.0%
TTAGAATGTCCAGTTCTGCT+TGG + chr3_4:66136389-66136408 Msa0515090:intron 40.0%
ATAACAACACCAAGCAGAAC+TGG - chr3_4:66136401-66136420 None:intergenic 40.0%
!! TGCTTGGTGTTGTTATGTAG+TGG + chr3_4:66136405-66136424 Msa0515090:intron 40.0%
GTGCTGTCAATTATGGAATG+CGG - chr3_4:66136579-66136598 None:intergenic 40.0%
CATTCCATAATTGACAGCAC+TGG + chr3_4:66136579-66136598 Msa0515090:intron 40.0%
AGAACCAGTGCTGTCAATTA+TGG - chr3_4:66136586-66136605 None:intergenic 40.0%
! AGACTATTTTCAACTCTCCC+TGG + chr3_4:66136632-66136651 Msa0515090:intron 40.0%
AGGCACTAAGTTGCATTTCA+TGG - chr3_4:66136756-66136775 None:intergenic 40.0%
ATGATGACTGATGTACCCTT+TGG + chr3_4:66136992-66137011 Msa0515090:CDS 40.0%
! GACTTAATTTTCCCCCATTC+AGG + chr3_4:66137224-66137243 Msa0515090:intron 40.0%
GAACTGTGAAATGAAGTTCG+TGG - chr3_4:66137305-66137324 None:intergenic 40.0%
CGAACTTCATTTCACAGTTC+AGG + chr3_4:66137305-66137324 Msa0515090:CDS 40.0%
! AAAATGGTTCTGTCTGGAGA+AGG + chr3_4:66137544-66137563 Msa0515090:CDS 40.0%
TGATGAAGCTCTTCCTTGTT+AGG - chr3_4:66137613-66137632 None:intergenic 40.0%
GGGGATAAGCACAAGAATTA+TGG - chr3_4:66137660-66137679 None:intergenic 40.0%
! CCAAGCCGAAGTTGATTTAT+TGG - chr3_4:66137814-66137833 None:intergenic 40.0%
CCAATAAATCAACTTCGGCT+TGG + chr3_4:66137811-66137830 Msa0515090:CDS 40.0%
GCTATAGGCTGTCTTATGAT+TGG + chr3_4:66137970-66137989 Msa0515090:intron 40.0%
TGCTTGTTCGTATGTCTTGA+AGG + chr3_4:66138341-66138360 Msa0515090:intron 40.0%
! CAGTTGGATTGATGGTTTGA+AGG + chr3_4:66138445-66138464 Msa0515090:CDS 40.0%
GATCATGCTAACGAACAAGT+AGG + chr3_4:66138467-66138486 Msa0515090:intron 40.0%
!!! TTGTGGTAGGAGTGTTTTCA+GGG - chr3_4:66138608-66138627 None:intergenic 40.0%
!!! TTTGTGGTAGGAGTGTTTTC+AGG - chr3_4:66138609-66138628 None:intergenic 40.0%
AAACACTCCTACCACAAAAG+AGG + chr3_4:66138611-66138630 Msa0515090:CDS 40.0%
AACACTCCTACCACAAAAGA+GGG + chr3_4:66138612-66138631 Msa0515090:CDS 40.0%
TCATGCATAGTCAAGTGGTT+TGG - chr3_4:66138783-66138802 None:intergenic 40.0%
ATGGTTCATGCATAGTCAAG+TGG - chr3_4:66138788-66138807 None:intergenic 40.0%
AGCACCCTGTTGAAATGAAA+TGG - chr3_4:66138807-66138826 None:intergenic 40.0%
TACTGCAAAAGCTGTGGAAT+GGG + chr3_4:66138868-66138887 Msa0515090:CDS 40.0%
! TCTTTAGAGGGATCCATTGT+CGG - chr3_4:66138993-66139012 None:intergenic 40.0%
AATCCAGCATGGTCTTTAGA+GGG - chr3_4:66139005-66139024 None:intergenic 40.0%
CCTTAAAGCATGGTTGTACT+TGG - chr3_4:66139124-66139143 None:intergenic 40.0%
CCAAGTACAACCATGCTTTA+AGG + chr3_4:66139121-66139140 Msa0515090:three_prime_UTR 40.0%
!!! AGGTTTTAGAACTTCACAGC+AGG + chr3_4:66139141-66139160 Msa0515090:three_prime_UTR 40.0%
TGCTAAGATTCCGCACATGA+CGG - chr3_4:66134305-66134324 None:intergenic 45.0%
TGCGGAATCTTAGCAGTGTT+GGG + chr3_4:66134310-66134329 Msa0515090:CDS 45.0%
! AATCTTAGCAGTGTTGGGTG+TGG + chr3_4:66134315-66134334 Msa0515090:CDS 45.0%
CAATGCAAACCACTCCAATC+AGG - chr3_4:66134406-66134425 None:intergenic 45.0%
! GAGGTTGATCTCCAGAAGTA+GGG - chr3_4:66134474-66134493 None:intergenic 45.0%
! AGAGGTTGATCTCCAGAAGT+AGG - chr3_4:66134475-66134494 None:intergenic 45.0%
ATTGCTGCTCGTGATGCTAT+TGG + chr3_4:66134905-66134924 Msa0515090:CDS 45.0%
!! ACCCCTCTTTATTTGGGTTG+GGG + chr3_4:66134932-66134951 Msa0515090:CDS 45.0%
!! CGTTTTAACCTCAACCTCGT+TGG + chr3_4:66134998-66135017 Msa0515090:intron 45.0%
TACTAAAGGAGGGGTAACCT+TGG + chr3_4:66135471-66135490 Msa0515090:intron 45.0%
GTTGTTGTCATGTGACTGGA+AGG + chr3_4:66135507-66135526 Msa0515090:intron 45.0%
! TTAGACAAGAGGCTGTTTCC+AGG - chr3_4:66135547-66135566 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr3_4:66135579-66135598 Msa0515090:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr3_4:66135582-66135601 Msa0515090:intron 45.0%
TGCCGATGCTTCTAATGTAG+AGG + chr3_4:66135767-66135786 Msa0515090:intron 45.0%
AATGCCTGTGTATGCTAGAG+GGG - chr3_4:66135847-66135866 None:intergenic 45.0%
!! GGAAGGGCTGATTATTTTGC+AGG + chr3_4:66135982-66136001 Msa0515090:intron 45.0%
CTGGAATATATATGCCCTGG+AGG - chr3_4:66136072-66136091 None:intergenic 45.0%
! AACTTTGCTGTCTTTGCAGG+AGG + chr3_4:66136228-66136247 Msa0515090:intron 45.0%
TTGCAGGAGGATTAAGAAGG+TGG + chr3_4:66136241-66136260 Msa0515090:intron 45.0%
!! ATTTGCTCTGAGAACCATGG+TGG - chr3_4:66136273-66136292 None:intergenic 45.0%
!! GGAATTTGCTCTGAGAACCA+TGG - chr3_4:66136276-66136295 None:intergenic 45.0%
GTTGGATCATAGCGTGTTGA+TGG - chr3_4:66136297-66136316 None:intergenic 45.0%
GGAATAGCTAACCCTCTCAA+AGG - chr3_4:66136334-66136353 None:intergenic 45.0%
! GCTATGCCACTGTTTTGTAG+CGG + chr3_4:66136531-66136550 Msa0515090:intron 45.0%
CGAATTCCGCTACAAAACAG+TGG - chr3_4:66136540-66136559 None:intergenic 45.0%
TGCAGTGGCCAATCGATATT+TGG + chr3_4:66137054-66137073 Msa0515090:CDS 45.0%
! TCTGCATTGGTATAGAGGTC+TGG + chr3_4:66137122-66137141 Msa0515090:intron 45.0%
! TCTTTTGCGGCTCTCAAATC+CGG - chr3_4:66137255-66137274 None:intergenic 45.0%
CTGTGAAATGAAGTTCGTGG+TGG - chr3_4:66137302-66137321 None:intergenic 45.0%
CTCGTCTGCTCAAGGTAAAA+TGG - chr3_4:66137353-66137372 None:intergenic 45.0%
! GGAAGGTATAGATGCACTTG+AGG + chr3_4:66137426-66137445 Msa0515090:intron 45.0%
! GGAGTGAAAATGGTTCTGTC+TGG + chr3_4:66137538-66137557 Msa0515090:CDS 45.0%
TAGGCGCCTTATGGAAATAC+AGG - chr3_4:66137594-66137613 None:intergenic 45.0%
! TTTCCATAAGGCGCCTAACA+AGG + chr3_4:66137597-66137616 Msa0515090:CDS 45.0%
TATCGATCCGGAGTGGAAAA+TGG + chr3_4:66137890-66137909 Msa0515090:CDS 45.0%
ATCTCGTCATGCAGCATAAG+AGG + chr3_4:66137943-66137962 Msa0515090:intron 45.0%
AGCATAAGAGGCTGAGCTAT+AGG + chr3_4:66137955-66137974 Msa0515090:intron 45.0%
GCACATATTGTACAGGCAGA+AGG + chr3_4:66138397-66138416 Msa0515090:intron 45.0%
GTCGGATACAGTTGGATTGA+TGG + chr3_4:66138437-66138456 Msa0515090:CDS 45.0%
! TGGTATCCCTCTTTTGTGGT+AGG - chr3_4:66138621-66138640 None:intergenic 45.0%
! GTAGTGGTATCCCTCTTTTG+TGG - chr3_4:66138625-66138644 None:intergenic 45.0%
CAAAAGAGGGATACCACTAC+AGG + chr3_4:66138625-66138644 Msa0515090:CDS 45.0%
ATGCAGTACTGCAAAAGCTG+TGG + chr3_4:66138862-66138881 Msa0515090:CDS 45.0%
GTACTGCAAAAGCTGTGGAA+TGG + chr3_4:66138867-66138886 Msa0515090:CDS 45.0%
TGCAGCATGGTCCAAAAATC+TGG + chr3_4:66138892-66138911 Msa0515090:CDS 45.0%
TCCAAAAATCTGGACCCTTC+AGG + chr3_4:66138902-66138921 Msa0515090:CDS 45.0%
! ACCTGAAGGGTCCAGATTTT+TGG - chr3_4:66138906-66138925 None:intergenic 45.0%
TGTTCATGCAGCTGCATACA+AGG + chr3_4:66138940-66138959 Msa0515090:CDS 45.0%
! CTTTAGAGGGATCCATTGTC+GGG - chr3_4:66138992-66139011 None:intergenic 45.0%
CAATCCAGCATGGTCTTTAG+AGG - chr3_4:66139006-66139025 None:intergenic 45.0%
!! ATTTATTCAAAAAAAAAAAA+GGG - chr3_4:66135395-66135414 None:intergenic 5.0%
!! AATTTATTCAAAAAAAAAAA+AGG - chr3_4:66135396-66135415 None:intergenic 5.0%
!! TAATAATTACATAAAAATAT+GGG - chr3_4:66137680-66137699 None:intergenic 5.0%
!! ATAATAATTACATAAAAATA+TGG - chr3_4:66137681-66137700 None:intergenic 5.0%
GTGCGGAATCTTAGCAGTGT+TGG + chr3_4:66134309-66134328 Msa0515090:CDS 50.0%
GCATCATCGAATTGTCTCGC+AGG + chr3_4:66134365-66134384 Msa0515090:CDS 50.0%
TGCGACATAGAGGACCTGAT+TGG + chr3_4:66134389-66134408 Msa0515090:CDS 50.0%
CATAGAGGACCTGATTGGAG+TGG + chr3_4:66134394-66134413 Msa0515090:CDS 50.0%
! TAGCAAGACGTTGATGAGCG+AGG - chr3_4:66134444-66134463 None:intergenic 50.0%
GCTATTGTGGACCCTACTTC+TGG + chr3_4:66134460-66134479 Msa0515090:CDS 50.0%
GCCCCAACCCAAATAAAGAG+GGG - chr3_4:66134936-66134955 None:intergenic 50.0%
GGCCCCAACCCAAATAAAGA+GGG - chr3_4:66134937-66134956 None:intergenic 50.0%
TGGCCCCAACCCAAATAAAG+AGG - chr3_4:66134938-66134957 None:intergenic 50.0%
!! TATTTGGGTTGGGGCCATGA+TGG + chr3_4:66134941-66134960 Msa0515090:CDS 50.0%
CTTAGACACCAACGAGGTTG+AGG - chr3_4:66135009-66135028 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr3_4:66135491-66135510 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG + chr3_4:66135513-66135532 Msa0515090:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG + chr3_4:66135514-66135533 Msa0515090:intron 50.0%
ATGCCTGTGTATGCTAGAGG+GGG - chr3_4:66135846-66135865 None:intergenic 50.0%
GAAGGTGGTACAATCCACCA+TGG + chr3_4:66136256-66136275 Msa0515090:CDS 50.0%
! TGATCCAACGGTTTTGCGTG+AGG + chr3_4:66136308-66136327 Msa0515090:CDS 50.0%
! TTTTGCGTGAGGCCTTTGAG+AGG + chr3_4:66136319-66136338 Msa0515090:CDS 50.0%
! TTTGCGTGAGGCCTTTGAGA+GGG + chr3_4:66136320-66136339 Msa0515090:CDS 50.0%
CTGTGATATCATGCAGGCTG+TGG + chr3_4:66136961-66136980 Msa0515090:intron 50.0%
CCGGACAACAGAACACCAAA+GGG - chr3_4:66137010-66137029 None:intergenic 50.0%
!! CCCTTTGGTGTTCTGTTGTC+CGG + chr3_4:66137007-66137026 Msa0515090:CDS 50.0%
TCCGGACAACAGAACACCAA+AGG - chr3_4:66137011-66137030 None:intergenic 50.0%
!! TTTGGTGTTCTGTTGTCCGG+AGG + chr3_4:66137010-66137029 Msa0515090:CDS 50.0%
AAGTGATGAGTCCAGTCCTC+CGG - chr3_4:66137029-66137048 None:intergenic 50.0%
! CTCATCACTTGTTGCTGCAG+TGG + chr3_4:66137039-66137058 Msa0515090:CDS 50.0%
TAACTGTGATCCCCACTGAC+GGG - chr3_4:66137095-66137114 None:intergenic 50.0%
GTAACTGTGATCCCCACTGA+CGG - chr3_4:66137096-66137115 None:intergenic 50.0%
AGGTCTGGACTATTCCCTCA+TGG + chr3_4:66137137-66137156 Msa0515090:intron 50.0%
AAATCCGGAGAGCCCTGAAT+GGG - chr3_4:66137240-66137259 None:intergenic 50.0%
GGATTTGAGAGCCGCAAAAG+AGG + chr3_4:66137254-66137273 Msa0515090:CDS 50.0%
CTTCCTTGTTAGGCGCCTTA+TGG - chr3_4:66137603-66137622 None:intergenic 50.0%
!! AACTTCGGCTTGGGGTATAG+AGG + chr3_4:66137821-66137840 Msa0515090:CDS 50.0%
CACTGCCATGGATATCGATC+CGG + chr3_4:66137878-66137897 Msa0515090:CDS 50.0%
CAGAAGGAACAGTTCAGCGA+TGG + chr3_4:66138413-66138432 Msa0515090:CDS 50.0%
GAACAGTTCAGCGATGGTGT+CGG + chr3_4:66138419-66138438 Msa0515090:CDS 50.0%
CAGTACTGCATGCCACACTA+GGG - chr3_4:66138853-66138872 None:intergenic 50.0%
! GATCCCTCTAAAGACCATGC+TGG + chr3_4:66138999-66139018 Msa0515090:exon 50.0%
TTGTTGGCAGCCGTCATGTG+CGG + chr3_4:66134292-66134311 Msa0515090:exon 55.0%
TTCGATGATGCGAGCGCGTT+TGG - chr3_4:66134356-66134375 None:intergenic 55.0%
TCTCGCAGGTTGCGACATAG+AGG + chr3_4:66134379-66134398 Msa0515090:CDS 55.0%
GTTGGGGCCATGATGGTATG+TGG + chr3_4:66134948-66134967 Msa0515090:intron 55.0%
GCAGCAGCCACATACCATCA+TGG - chr3_4:66134958-66134977 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr3_4:66135526-66135545 Msa0515090:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr3_4:66135622-66135641 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr3_4:66135623-66135642 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr3_4:66135627-66135646 Msa0515090:intron 55.0%
TGCCTGTGTATGCTAGAGGG+GGG - chr3_4:66135845-66135864 None:intergenic 55.0%
AAGGCCTCACGCAAAACCGT+TGG - chr3_4:66136315-66136334 None:intergenic 55.0%
TGTTCTGTTGTCCGGAGGAC+TGG + chr3_4:66137015-66137034 Msa0515090:CDS 55.0%
AATCCGGAGAGCCCTGAATG+GGG - chr3_4:66137239-66137258 None:intergenic 55.0%
CAAATCCGGAGAGCCCTGAA+TGG - chr3_4:66137241-66137260 None:intergenic 55.0%
! AGAGGCACGTGTACCGTTCT+TGG + chr3_4:66137839-66137858 Msa0515090:CDS 55.0%
CCACTCCGGATCGATATCCA+TGG - chr3_4:66137886-66137905 None:intergenic 55.0%
CCATGGATATCGATCCGGAG+TGG + chr3_4:66137883-66137902 Msa0515090:CDS 55.0%
! GCGATGGTGTCGGATACAGT+TGG + chr3_4:66138429-66138448 Msa0515090:CDS 55.0%
TCAGCATTGCGTCTGTGACC+TGG - chr3_4:66138566-66138585 None:intergenic 55.0%
!! CATTTCAACAGGGTGCTGCC+AGG + chr3_4:66138810-66138829 Msa0515090:intron 55.0%
GCAGTACTGCATGCCACACT+AGG - chr3_4:66138854-66138873 None:intergenic 55.0%
CTGTGGAATGGGATGCAGCA+TGG + chr3_4:66138879-66138898 Msa0515090:CDS 55.0%
AGCTGCATGAACACCAAGCG+CGG - chr3_4:66138933-66138952 None:intergenic 55.0%
GAGCGGCTTAGACACCAACG+AGG - chr3_4:66135015-66135034 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr3_4:66135480-66135499 Msa0515090:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr3_4:66135595-66135614 Msa0515090:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr3_4:66135628-66135647 Msa0515090:intron 60.0%
TCCCCCCCTCTAGCATACAC+AGG + chr3_4:66135840-66135859 Msa0515090:intron 60.0%
GCCTGTGTATGCTAGAGGGG+GGG - chr3_4:66135844-66135863 None:intergenic 60.0%
ATACTGACGCTGCCCGTCAG+TGG + chr3_4:66137080-66137099 Msa0515090:CDS 60.0%
TACTGACGCTGCCCGTCAGT+GGG + chr3_4:66137081-66137100 Msa0515090:CDS 60.0%
TTCCCCCATTCAGGGCTCTC+CGG + chr3_4:66137233-66137252 Msa0515090:intron 60.0%
ATCCGGAGAGCCCTGAATGG+GGG - chr3_4:66137238-66137257 None:intergenic 60.0%
GCTGCCAGGTCAACAGTTCC+AGG + chr3_4:66138824-66138843 Msa0515090:CDS 60.0%
GCCAGGTCAACAGTTCCAGG+AGG + chr3_4:66138827-66138846 Msa0515090:CDS 60.0%
GCCTCCTGGAACTGTTGACC+TGG - chr3_4:66138831-66138850 None:intergenic 60.0%
AGTTCCAGGAGGCCCTAGTG+TGG + chr3_4:66138838-66138857 Msa0515090:CDS 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr3_4:66135597-66135616 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr3_4:66135610-66135629 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr3_4:66135611-66135630 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr3_4:66135610-66135629 Msa0515090:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr3_4:66135611-66135630 Msa0515090:intron 65.0%
ACTGACGCTGCCCGTCAGTG+GGG + chr3_4:66137082-66137101 Msa0515090:CDS 65.0%
CATGCCACACTAGGGCCTCC+TGG - chr3_4:66138845-66138864 None:intergenic 65.0%
CAAGCGCGGCACGACCTGAA+GGG - chr3_4:66138919-66138938 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG - chr3_4:66135612-66135631 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr3_4:66135616-66135635 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr3_4:66135617-66135636 None:intergenic 70.0%
CCAAGCGCGGCACGACCTGA+AGG - chr3_4:66138920-66138939 None:intergenic 70.0%
CCTTCAGGTCGTGCCGCGCT+TGG + chr3_4:66138917-66138936 Msa0515090:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66134187 66139242 66134187 ID=Msa0515090;Name=Msa0515090
chr3_4 mRNA 66134187 66139242 66134187 ID=Msa0515090-mRNA-1;Parent=Msa0515090;Name=Msa0515090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=120|1|1|1|1|1|13|233|570
chr3_4 exon 66134187 66134525 66134187 ID=Msa0515090-mRNA-1:exon:17000;Parent=Msa0515090-mRNA-1
chr3_4 exon 66134638 66134733 66134638 ID=Msa0515090-mRNA-1:exon:17001;Parent=Msa0515090-mRNA-1
chr3_4 exon 66134821 66134962 66134821 ID=Msa0515090-mRNA-1:exon:17002;Parent=Msa0515090-mRNA-1
chr3_4 exon 66136004 66136099 66136004 ID=Msa0515090-mRNA-1:exon:17003;Parent=Msa0515090-mRNA-1
chr3_4 exon 66136247 66136341 66136247 ID=Msa0515090-mRNA-1:exon:17004;Parent=Msa0515090-mRNA-1
chr3_4 exon 66136977 66137138 66136977 ID=Msa0515090-mRNA-1:exon:17005;Parent=Msa0515090-mRNA-1
chr3_4 exon 66137246 66137326 66137246 ID=Msa0515090-mRNA-1:exon:17006;Parent=Msa0515090-mRNA-1
chr3_4 exon 66137427 66137648 66137427 ID=Msa0515090-mRNA-1:exon:17007;Parent=Msa0515090-mRNA-1
chr3_4 exon 66137777 66137911 66137777 ID=Msa0515090-mRNA-1:exon:17008;Parent=Msa0515090-mRNA-1
chr3_4 exon 66138234 66138314 66138234 ID=Msa0515090-mRNA-1:exon:17009;Parent=Msa0515090-mRNA-1
chr3_4 exon 66138398 66138484 66138398 ID=Msa0515090-mRNA-1:exon:17010;Parent=Msa0515090-mRNA-1
chr3_4 exon 66138567 66138674 66138567 ID=Msa0515090-mRNA-1:exon:17011;Parent=Msa0515090-mRNA-1
chr3_4 exon 66138821 66139242 66138821 ID=Msa0515090-mRNA-1:exon:17012;Parent=Msa0515090-mRNA-1
chr3_4 five_prime_UTR 66134187 66134306 66134187 ID=Msa0515090-mRNA-1:five_prime_utr;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66134307 66134525 66134307 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66134638 66134733 66134638 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66134821 66134962 66134821 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66136004 66136099 66136004 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66136247 66136341 66136247 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66136977 66137138 66136977 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66137246 66137326 66137246 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66137427 66137648 66137427 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66137777 66137911 66137777 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66138234 66138314 66138234 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66138398 66138484 66138398 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66138567 66138674 66138567 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 CDS 66138821 66139009 66138821 ID=Msa0515090-mRNA-1:cds;Parent=Msa0515090-mRNA-1
chr3_4 three_prime_UTR 66139010 66139242 66139010 ID=Msa0515090-mRNA-1:three_prime_utr;Parent=Msa0515090-mRNA-1
Gene Sequence

>Msa0515090

ATGTGCGGAATCTTAGCAGTGTTGGGTGTGGTCGACAATTCTCAGTCCAAACGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGACATAGAGGACCTGATTGGAGTGGTTTGCATTGTCATCAAGATTGTTACCTCGCTCATCAACGTCTTGCTATTGTGGACCCTACTTCTGGAGATCAACCTCTTTACAACTATGACAAGACCGTTATTGTCACCGTTAATGGGGAGATATACAACCACAAAAAATTGAGACAGAAACTGAAATCTCATCAATTTCGAACTGGTAGTGATTGTGAAGTCATTGCTCATCTTTATGAAGAATATGGAGAAGAGTTTGTTGATATGCTGGATGGGATGTTCTCATTTGTGCTTCTTGATACTAGAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGTTGGGGCCATGATGGATCAATATGGTTTGCGTCTGAAATGAAAGCGCTGATTGATGATTGTGAGCAATTTATATCTTTTCCTCCAGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTCTCAGAGCAAATTCCATCAACACGCTATGATCCAACGGTTTTGCGTGAGGCCTTTGAGAGGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGTGTTCTGTTGTCCGGAGGACTGGACTCATCACTTGTTGCTGCAGTGGCCAATCGATATTTGGCTGATACTGACGCTGCCCGTCAGTGGGGATCACAGTTACATACTTTCTGCATTGGTATAGAGGGCTCTCCGGATTTGAGAGCCGCAAAAGAGGTAGCAAATTATCTTGGCACTTGCCACCACGAACTTCATTTCACAGTTCAGGAAGGTATAGATGCACTTGAGGAAGTCATTTACCATATTGAAACATATGATGTAACGACTGTCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATCAAATCATTGGGAGTGAAAATGGTTCTGTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTCCATAAGGCGCCTAACAAGGAAGAGCTTCATCAAGAAACATGCCGAAAAATTAAAGCACTTCATCTTTATGACTGCCTGAGAGCCAATAAATCAACTTCGGCTTGGGGTATAGAGGCACGTGTACCGTTCTTGGATAAAGAATTTATCAACACTGCCATGGATATCGATCCGGAGTGGAAAATGATAAAGCCTGATATTGAAAGGATAGAGAAATGGGTATTGCGCAATGCATTTGATGATGATGAGAATCCATATTTGCCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGCGATGGTGTCGGATACAGTTGGATTGATGGTTTGAAGGATCATGCTAACGAACAAGTCACAGACGCAATGCTGAAGCATGCCAACTTTGTTTACCCTGAAAACACTCCTACCACAAAAGAGGGATACCACTACAGGACAATTTTTGAGAAGTTATTTCCAAAGGGTGCTGCCAGGTCAACAGTTCCAGGAGGCCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAAAAATCTGGACCCTTCAGGTCGTGCCGCGCTTGGTGTTCATGCAGCTGCATACAAGGATGCAGTAGATATCAAAATAAAAGAGCCCGACAATGGATCCCTCTAA

Protein sequence

>Msa0515090

MCGILAVLGVVDNSQSKRARIIELSRRLRHRGPDWSGLHCHQDCYLAHQRLAIVDPTSGDQPLYNYDKTVIVTVNGEIYNHKKLRQKLKSHQFRTGSDCEVIAHLYEEYGEEFVDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYLGWGHDGSIWFASEMKALIDDCEQFISFPPGHIYSSKQGGLRRWYNPPWFSEQIPSTRYDPTVLREAFERAVVKRMMTDVPFGVLLSGGLDSSLVAAVANRYLADTDAARQWGSQLHTFCIGIEGSPDLRAAKEVANYLGTCHHELHFTVQEGIDALEEVIYHIETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHQETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKEFINTAMDIDPEWKMIKPDIERIEKWVLRNAFDDDENPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANEQVTDAMLKHANFVYPENTPTTKEGYHYRTIFEKLFPKGAARSTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHAAAYKDAVDIKIKEPDNGSL*