AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0308990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0308990 MtrunA17_Chr4g0073831 91.755 376 25 2 29 404 4 373 0.0 705
Msa0308990 MtrunA17_Chr2g0277331 81.951 410 24 6 29 404 6 399 0.0 642
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0308990 AT1G09795.1 79.292 367 66 2 42 404 53 413 0.0 610
Msa0308990 AT1G58080.1 82.196 337 60 0 68 404 75 411 0.0 592

Find 130 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATATATGTGTTCCATTTA+TGG 0.114201 2_4:+3435900 Msa0308990:three_prime_UTR
CCATTATCTTTCATAAATTT+AGG 0.178616 2_4:-3433558 None:intergenic
TTCTGCATTGATAGTATCTT+TGG 0.181524 2_4:-3435946 None:intergenic
CTTGATATACTCACTGAATT+TGG 0.209989 2_4:+3432157 Msa0308990:CDS
ATCTCTTTCCTGGCGGAGAC+TGG 0.219395 2_4:-3431819 None:intergenic
ACAACAAACTACTCCATAAA+TGG 0.220482 2_4:-3435913 None:intergenic
GAAACTCAAGTACTCCTTAA+TGG 0.221771 2_4:+3431792 Msa0308990:CDS
CGGAGACTGGGTTTCCATTA+AGG 0.239700 2_4:-3431806 None:intergenic
ACCATCATTGGCTGGGTTGC+AGG 0.240929 2_4:+3435137 Msa0308990:CDS
AATTGAAGGTGGAACTGTTT+TGG 0.258121 2_4:+3434725 Msa0308990:CDS
AGCTTTCCAACTTGGAAGTA+TGG 0.273300 2_4:+3432068 Msa0308990:intron
GACTTGTACAATGCCTTCTT+TGG 0.281592 2_4:-3435421 None:intergenic
CCACTTCTGCATCGGCTTGT+AGG 0.290273 2_4:+3436024 Msa0308990:three_prime_UTR
TCTGCATTGATAGTATCTTT+GGG 0.295957 2_4:-3435945 None:intergenic
AACGAAATTGCATTTCTTGC+TGG 0.297884 2_4:+3435986 Msa0308990:three_prime_UTR
CAATTTACTGCTTGCTGAAC+AGG 0.300223 2_4:-3431738 None:intergenic
CGCCAGCTCCTTTCTAAACT+TGG 0.303940 2_4:+3435870 Msa0308990:CDS
CCTAAATTTATGAAAGATAA+TGG 0.318633 2_4:+3433558 Msa0308990:CDS
ACTTATCTAACCAAGTATTA+TGG 0.318977 2_4:-3436092 None:intergenic
AAACCAAATAATAAGATAAA+AGG 0.320423 2_4:+3431513 Msa0308990:five_prime_UTR
AGAAAGGAGCTGGCGCCATC+TGG 0.330813 2_4:-3435862 None:intergenic
CATTCAGATAGTAGTAATAT+TGG 0.333635 2_4:+3431665 Msa0308990:CDS
CTTTGGCACACATATGACTA+TGG 0.334395 2_4:-3435404 None:intergenic
TTGTTTCAGATTCCTCAGTA+TGG 0.337830 2_4:+3433330 Msa0308990:intron
CTTGTTTGATTAACTAATGC+TGG 0.342865 2_4:-3436290 None:intergenic
GTGCACGAGGCTTTGGAGTA+TGG 0.349565 2_4:+3433211 Msa0308990:CDS
ACGATGATGATGAGCCAAAT+TGG 0.350592 2_4:+3431708 Msa0308990:CDS
ACCAAGACGGATCTCTTTCC+TGG 0.352781 2_4:-3431829 None:intergenic
TATCATTGTGCACGAGGCTT+TGG 0.356493 2_4:+3433204 Msa0308990:CDS
GAACAGGAGTGAAACCAATT+TGG 0.368425 2_4:-3431722 None:intergenic
TTTAACTTCAACATTGTTGT+TGG 0.383014 2_4:+3436135 Msa0308990:three_prime_UTR
TCATGAGATGCTTGAAAGAT+TGG 0.385558 2_4:+3434944 Msa0308990:CDS
TCCATCACGCTTGCAGAAAA+CGG 0.387763 2_4:-3435359 None:intergenic
GGGAATTGCTGATGCTATCT+TGG 0.397741 2_4:+3434656 Msa0308990:CDS
TTCATAAATTGAAGAGGAGG+AGG 0.403307 2_4:-3431772 None:intergenic
CCATCACGCTTGCAGAAAAC+GGG 0.416870 2_4:-3435358 None:intergenic
ATTGAAAGAAAATAACTTGA+AGG 0.424383 2_4:+3434701 Msa0308990:CDS
TAAGATAAAAGGAGAGAAAG+AGG 0.424595 2_4:+3431524 Msa0308990:five_prime_UTR
ATGTGAAATTAGAAATTTGC+GGG 0.426209 2_4:+3436262 Msa0308990:three_prime_UTR
GAGGCACATCTGAGGGCGAT+GGG 0.428682 2_4:+3434966 Msa0308990:CDS
TAATACTTGGTTAGATAAGT+AGG 0.438205 2_4:+3436095 Msa0308990:three_prime_UTR
CAGAAGAAAGAAACAGAAAG+AGG 0.441421 2_4:+3431568 Msa0308990:five_prime_UTR
TTGTTGTTGGAGTTATACTA+TGG 0.447465 2_4:+3436148 Msa0308990:three_prime_UTR
ATTGTAAGAAAATTGTTATC+CGG 0.447935 2_4:+3432109 Msa0308990:CDS
TTAATTCTGTCCATAATACT+TGG 0.449057 2_4:+3436082 Msa0308990:three_prime_UTR
GGAGGCACATCTGAGGGCGA+TGG 0.453025 2_4:+3434965 Msa0308990:CDS
TCTCTTTCCTGGCGGAGACT+GGG 0.457663 2_4:-3431818 None:intergenic
AGGCTGCTCTTGTTGCGAGC+AGG 0.461210 2_4:+3434883 Msa0308990:intron
AATTTGAGCAACATACTGTC+TGG 0.464852 2_4:-3431931 None:intergenic
AGTACTGAGCCAACCATCAT+TGG 0.465847 2_4:+3435125 Msa0308990:CDS
AGGAAGCAGTGCAGAGGAAG+TGG 0.466330 2_4:+3435095 Msa0308990:CDS
GAGGGCGATGGGGCAGTTCA+CGG 0.466433 2_4:+3434977 Msa0308990:CDS
TACACTCCAGCTTTCCAACT+TGG 0.467279 2_4:+3432060 Msa0308990:intron
AAGCCTCTGAGAGTTGCAAC+TGG 0.474293 2_4:+3433414 Msa0308990:CDS
CTGAGCCAACCATCATTGGC+TGG 0.475399 2_4:+3435129 Msa0308990:CDS
CTGCATTGATAGTATCTTTG+GGG 0.479892 2_4:-3435944 None:intergenic
AATACTTGGTTAGATAAGTA+GGG 0.485402 2_4:+3436096 Msa0308990:three_prime_UTR
ATGTAGTTCCACTACTTACA+AGG 0.491288 2_4:-3434680 None:intergenic
AGTCATATGTGTGCCAAAGA+AGG 0.500447 2_4:+3435408 Msa0308990:CDS
AAATCGATGATTGGACGAAA+AGG 0.502489 2_4:+3434906 Msa0308990:CDS
CTGAAACCATACTTCCAAGT+TGG 0.505934 2_4:-3432074 None:intergenic
GAAGACATCCGACCTTTGCT+TGG 0.507615 2_4:-3431855 None:intergenic
TTGTTTGATTAACTAATGCT+GGG 0.508108 2_4:-3436289 None:intergenic
GATACCAAGGTCAAGATCTC+CGG 0.510734 2_4:-3432128 None:intergenic
TTCGACTGCTGATGGAGCAC+TGG 0.513957 2_4:+3433599 Msa0308990:CDS
AAGATAAAAGGAGAGAAAGA+GGG 0.519350 2_4:+3431525 Msa0308990:five_prime_UTR
ACTATAGTCCAAGTTTAGAA+AGG 0.521278 2_4:-3435878 None:intergenic
GTCCAAGTTTAGAAAGGAGC+TGG 0.532328 2_4:-3435872 None:intergenic
TTAGTTAATCAAACAAGTGA+AGG 0.533555 2_4:+3436296 Msa0308990:three_prime_UTR
ATGGAAACCCAGTCTCCGCC+AGG 0.536174 2_4:+3431811 Msa0308990:CDS
GCGAGCAGGAAATCGATGAT+TGG 0.536182 2_4:+3434897 Msa0308990:CDS
GTATGTTGCTCAAATTCCTC+AGG 0.536649 2_4:+3431938 Msa0308990:CDS
GAAAGGAGCTGGCGCCATCT+GGG 0.539669 2_4:-3435861 None:intergenic
GCCAGGAAAGAGATCCGTCT+TGG 0.542357 2_4:+3431828 Msa0308990:CDS
ACCTGCAACCCAGCCAATGA+TGG 0.542827 2_4:-3435138 None:intergenic
CTTGAGAAGGTCGAGTGTAT+CGG 0.543647 2_4:-3431877 None:intergenic
TTATCCGGAGATCTTGACCT+TGG 0.545845 2_4:+3432124 Msa0308990:CDS
AATAACTTGAAGGAAATTGA+AGG 0.546732 2_4:+3434711 Msa0308990:CDS
CGTCTTGGTTTGCCAAGCAA+AGG 0.547016 2_4:+3431843 Msa0308990:CDS
TGAGATGCTTGAAAGATTGG+AGG 0.547977 2_4:+3434947 Msa0308990:CDS
CCTACAAGCCGATGCAGAAG+TGG 0.550151 2_4:-3436024 None:intergenic
TATACTCACTGAATTTGGCC+AGG 0.550883 2_4:+3432162 Msa0308990:CDS
ATTTGAGCAACATACTGTCT+GGG 0.552782 2_4:-3431930 None:intergenic
ATCTTGGACCTTGTAAGTAG+TGG 0.552901 2_4:+3434672 Msa0308990:CDS
AGCACTGGAGGCAGCTCCTG+CGG 0.560029 2_4:+3433614 Msa0308990:CDS
TTGAGTTTCATAAATTGAAG+AGG 0.563607 2_4:-3431778 None:intergenic
AGTTTCATAAATTGAAGAGG+AGG 0.570962 2_4:-3431775 None:intergenic
CGATACACTCGACCTTCTCA+AGG 0.571951 2_4:+3431878 Msa0308990:CDS
GACTGCTGATGGAGCACTGG+AGG 0.576762 2_4:+3433602 Msa0308990:CDS
AGATATTCCCACTTCTGCAT+CGG 0.578518 2_4:+3436016 Msa0308990:three_prime_UTR
TTTCTGCAAGCGTGATGGAA+AGG 0.581353 2_4:+3435363 Msa0308990:CDS
TTCCACCTACCTCAATGAGC+TGG 0.583516 2_4:+3436211 Msa0308990:three_prime_UTR
TGAAAATGTAAATTCACTAG+AGG 0.584392 2_4:+3433359 Msa0308990:CDS
ATAAATTGAAGAGGAGGAGG+AGG 0.585140 2_4:-3431769 None:intergenic
GATCTTGACCTTGGTATCGT+AGG 0.585932 2_4:+3432133 Msa0308990:CDS
GTTCATATGATGCAGATTGG+AGG 0.586050 2_4:+3435789 Msa0308990:intron
CGATCTTATCATTGTGCACG+AGG 0.586126 2_4:+3433198 Msa0308990:CDS
AAAGATTGGAGGCACATCTG+AGG 0.586441 2_4:+3434958 Msa0308990:CDS
AAGATTGGAGGCACATCTGA+GGG 0.587964 2_4:+3434959 Msa0308990:CDS
AGAAGAAAGAAACAGAAAGA+GGG 0.589280 2_4:+3431569 Msa0308990:five_prime_UTR
TGAGCCAACCATCATTGGCT+GGG 0.591014 2_4:+3435130 Msa0308990:CDS
GAAATTAGAAATTTGCGGGA+TGG 0.591843 2_4:+3436266 Msa0308990:three_prime_UTR
TGCATTGATAGTATCTTTGG+GGG 0.595193 2_4:-3435943 None:intergenic
ACTTGGAAGTATGGTTTCAG+AGG 0.598140 2_4:+3432077 Msa0308990:CDS
CATGTGAAATTAGAAATTTG+CGG 0.601685 2_4:+3436261 Msa0308990:three_prime_UTR
GCAACCCAGCCAATGATGGT+TGG 0.605047 2_4:-3435134 None:intergenic
ATGATGCAGATTGGAGGCAG+CGG 0.611608 2_4:+3435795 Msa0308990:intron
TTGGTTTGCCAAGCAAAGGT+CGG 0.612452 2_4:+3431847 Msa0308990:CDS
GCAGAAAACGGGACTTACAG+TGG 0.618700 2_4:-3435347 None:intergenic
GATGACCAGCTCATTGAGGT+AGG 0.621980 2_4:-3436216 None:intergenic
CTTTGCTTGGCAAACCAAGA+CGG 0.625476 2_4:-3431842 None:intergenic
AATCCAGTTGCAACTCTCAG+AGG 0.625497 2_4:-3433417 None:intergenic
TATGAGAGGAAGCAGTGCAG+AGG 0.626577 2_4:+3435089 Msa0308990:CDS
AGATAATGGCATTAAGCATG+TGG 0.627844 2_4:+3433572 Msa0308990:CDS
TTGATGAGGAAACTCCCAGA+TGG 0.630461 2_4:+3435847 Msa0308990:CDS
AGGCACATCTGAGGGCGATG+GGG 0.631283 2_4:+3434967 Msa0308990:CDS
GACCAGCTCATTGAGGTAGG+TGG 0.635644 2_4:-3436213 None:intergenic
TAGTTAATCAAACAAGTGAA+GGG 0.635773 2_4:+3436297 Msa0308990:three_prime_UTR
GTCTATACAGCAATTGAGAG+CGG 0.638210 2_4:+3435441 Msa0308990:CDS
CAGGTCACTGCAAATATGAG+AGG 0.643908 2_4:+3435075 Msa0308990:intron
CTACAAGCCGATGCAGAAGT+GGG 0.646815 2_4:-3436023 None:intergenic
ATAAGATGACCAGCTCATTG+AGG 0.648580 2_4:-3436220 None:intergenic
AACTTGAAGGAAATTGAAGG+TGG 0.649831 2_4:+3434714 Msa0308990:CDS
TGATTGTCGTTTATCCATTG+CGG 0.655142 2_4:+3433234 Msa0308990:CDS
ATACTTGGTTAGATAAGTAG+GGG 0.656405 2_4:+3436097 Msa0308990:three_prime_UTR
CAGAAAACGGGACTTACAGT+GGG 0.660083 2_4:-3435346 None:intergenic
ACAATTGACAGTCCTTGAGA+AGG 0.663029 2_4:-3431890 None:intergenic
TATCAAGTCCTACGATACCA+AGG 0.676300 2_4:-3432141 None:intergenic
TACTTGGTTAGATAAGTAGG+GGG 0.701332 2_4:+3436098 Msa0308990:three_prime_UTR
AAGACGGATCTCTTTCCTGG+CGG 0.740099 2_4:-3431826 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTAATTATACTAAATAT+AGG - chr2_4:3432787-3432806 None:intergenic 10.0%
!! AAACCAAATAATAAGATAAA+AGG + chr2_4:3431513-3431532 Msa0308990:five_prime_UTR 15.0%
!!! GTTTAACTTTTAAATTTTGT+TGG - chr2_4:3432756-3432775 None:intergenic 15.0%
!! TTAGTATAATTAACATGAAT+TGG + chr2_4:3432791-3432810 Msa0308990:intron 15.0%
!!! TTTAAAATCTGAAAACATAA+AGG - chr2_4:3433673-3433692 None:intergenic 15.0%
!! CAAAATTTATCAAAAACTAT+AGG - chr2_4:3433780-3433799 None:intergenic 15.0%
!! ATTGTTTAAGTAAAACAATT+AGG + chr2_4:3434216-3434235 Msa0308990:intron 15.0%
!! TTGATCTAATTATAAATTTC+TGG + chr2_4:3434258-3434277 Msa0308990:intron 15.0%
!!! TCTCCTTTTATCTTATTATT+TGG - chr2_4:3431519-3431538 None:intergenic 20.0%
!! AAAAATGACATGTGATAAAT+GGG - chr2_4:3431621-3431640 None:intergenic 20.0%
!!! AATTTTCTTACAATGTCTTT+GGG - chr2_4:3432103-3432122 None:intergenic 20.0%
!! ATTGTAAGAAAATTGTTATC+CGG + chr2_4:3432109-3432128 Msa0308990:CDS 20.0%
!! AAATCATACAAAATTACTGT+TGG + chr2_4:3432306-3432325 Msa0308990:intron 20.0%
!! CATTTCTTTCAAATAAATGT+TGG - chr2_4:3432522-3432541 None:intergenic 20.0%
!!! TTTTTTCTTTCTTTTTCTGT+AGG + chr2_4:3432616-3432635 Msa0308990:intron 20.0%
!! ATAAAAAAAGTTAAGCTTAC+GGG - chr2_4:3433151-3433170 None:intergenic 20.0%
!! CATAAAAAAAGTTAAGCTTA+CGG - chr2_4:3433152-3433171 None:intergenic 20.0%
!! CCATTATCTTTCATAAATTT+AGG - chr2_4:3433561-3433580 None:intergenic 20.0%
!! CCTAAATTTATGAAAGATAA+TGG + chr2_4:3433558-3433577 Msa0308990:CDS 20.0%
!!! AGATTATTTTCACATTTCAT+AGG + chr2_4:3433898-3433917 Msa0308990:intron 20.0%
!!! TCAAATAAGAAAGTATAGAT+TGG - chr2_4:3434139-3434158 None:intergenic 20.0%
!!! TCTATACTTTCTTATTTGAA+AGG + chr2_4:3434140-3434159 Msa0308990:intron 20.0%
!!! CTATACTTTCTTATTTGAAA+GGG + chr2_4:3434141-3434160 Msa0308990:intron 20.0%
!!! GAAATATTTTATATGGAAAG+AGG - chr2_4:3434473-3434492 None:intergenic 20.0%
!!! TAACAGGGAAATATTTTATA+TGG - chr2_4:3434480-3434499 None:intergenic 20.0%
!! AAAATGAATCAAAAAAGATC+AGG - chr2_4:3434606-3434625 None:intergenic 20.0%
!! ATTGAAAGAAAATAACTTGA+AGG + chr2_4:3434701-3434720 Msa0308990:CDS 20.0%
!! AATCTACAATTAGAAGAAAA+CGG - chr2_4:3435052-3435071 None:intergenic 20.0%
!!! TTTTCTTCTAATTGTAGATT+CGG + chr2_4:3435052-3435071 Msa0308990:intron 20.0%
!!! TATTTTTCTTGTTCTTAAGT+TGG - chr2_4:3435545-3435564 None:intergenic 20.0%
!! ACAAGAAAAATAGAAAAGTA+AGG + chr2_4:3435553-3435572 Msa0308990:intron 20.0%
!! TTATATATGTGTTCCATTTA+TGG + chr2_4:3435900-3435919 Msa0308990:three_prime_UTR 20.0%
! GAAAAATGACATGTGATAAA+TGG - chr2_4:3431622-3431641 None:intergenic 25.0%
! CATTCAGATAGTAGTAATAT+TGG + chr2_4:3431665-3431684 Msa0308990:CDS 25.0%
! TTGAGTTTCATAAATTGAAG+AGG - chr2_4:3431781-3431800 None:intergenic 25.0%
!! CAATTTTCTTACAATGTCTT+TGG - chr2_4:3432104-3432123 None:intergenic 25.0%
!! TGTAATTTGTCACTAAGATA+GGG - chr2_4:3432447-3432466 None:intergenic 25.0%
! TTCTTTCAAATAAATGTTGG+AGG - chr2_4:3432519-3432538 None:intergenic 25.0%
!!! AAGTTGGTATAACGTTTAAT+AGG - chr2_4:3432708-3432727 None:intergenic 25.0%
! TATTAAACGTTATACCAACT+TGG + chr2_4:3432707-3432726 Msa0308990:intron 25.0%
!! ATCTTGAAGCATTTCTAATT+AGG - chr2_4:3432930-3432949 None:intergenic 25.0%
! TGCATGTGTTAAAATTTAAC+AGG + chr2_4:3433003-3433022 Msa0308990:intron 25.0%
! TATGTTTATCATTCTTTGTC+AGG + chr2_4:3433168-3433187 Msa0308990:intron 25.0%
! ATGTTTATCATTCTTTGTCA+GGG + chr2_4:3433169-3433188 Msa0308990:intron 25.0%
! CAAAAAACAATGATACTGAT+AGG - chr2_4:3433286-3433305 None:intergenic 25.0%
!! TTTTCAAATATTCCATACTG+AGG - chr2_4:3433345-3433364 None:intergenic 25.0%
! TGAAAATGTAAATTCACTAG+AGG + chr2_4:3433359-3433378 Msa0308990:CDS 25.0%
! TTAGTTGAATGTGAATACAT+AGG - chr2_4:3433445-3433464 None:intergenic 25.0%
!! TGTTTACCTTTTAAATGAGA+AGG + chr2_4:3433499-3433518 Msa0308990:intron 25.0%
! TTGAATCAAATGATAGCTAT+TGG + chr2_4:3433734-3433753 Msa0308990:intron 25.0%
! TGAATCAAATGATAGCTATT+GGG + chr2_4:3433735-3433754 Msa0308990:intron 25.0%
! ATAGCTTAATACACTAATCA+TGG + chr2_4:3433810-3433829 Msa0308990:intron 25.0%
!! AATGGTTATCCTTGATTTTT+GGG - chr2_4:3433854-3433873 None:intergenic 25.0%
! TAGGATGAAAAACTGTAAAA+CGG + chr2_4:3433917-3433936 Msa0308990:intron 25.0%
! TAGTCAATATTCTGTATTCA+AGG + chr2_4:3433989-3434008 Msa0308990:intron 25.0%
!!! AAATTTCTGGTTCATTTGAA+AGG + chr2_4:3434271-3434290 Msa0308990:intron 25.0%
! AATAACTTGAAGGAAATTGA+AGG + chr2_4:3434711-3434730 Msa0308990:CDS 25.0%
! GCAAAAAGAAAATACAGAAA+AGG - chr2_4:3435220-3435239 None:intergenic 25.0%
!!! AGTTTGAGTTTTCTATCAAA+AGG + chr2_4:3435494-3435513 Msa0308990:intron 25.0%
!!! GTTTGAGTTTTCTATCAAAA+GGG + chr2_4:3435495-3435514 Msa0308990:intron 25.0%
!!! TTTGAGTTTTCTATCAAAAG+GGG + chr2_4:3435496-3435515 Msa0308990:intron 25.0%
! AATAGAAAAGTAAGGTTGAA+TGG + chr2_4:3435561-3435580 Msa0308990:intron 25.0%
! ATAGAAAAGTAAGGTTGAAT+GGG + chr2_4:3435562-3435581 Msa0308990:intron 25.0%
! TCATCAAAAATATAGGTCAA+GGG - chr2_4:3435834-3435853 None:intergenic 25.0%
! AGTTTCCTCATCAAAAATAT+AGG - chr2_4:3435841-3435860 None:intergenic 25.0%
! TTAATTCTGTCCATAATACT+TGG + chr2_4:3436082-3436101 Msa0308990:three_prime_UTR 25.0%
! ACTTATCTAACCAAGTATTA+TGG - chr2_4:3436095-3436114 None:intergenic 25.0%
! TAATACTTGGTTAGATAAGT+AGG + chr2_4:3436095-3436114 Msa0308990:three_prime_UTR 25.0%
! AATACTTGGTTAGATAAGTA+GGG + chr2_4:3436096-3436115 Msa0308990:three_prime_UTR 25.0%
!! TTTAACTTCAACATTGTTGT+TGG + chr2_4:3436135-3436154 Msa0308990:three_prime_UTR 25.0%
! CATGTGAAATTAGAAATTTG+CGG + chr2_4:3436261-3436280 Msa0308990:three_prime_UTR 25.0%
! ATGTGAAATTAGAAATTTGC+GGG + chr2_4:3436262-3436281 Msa0308990:three_prime_UTR 25.0%
! TTGTTTGATTAACTAATGCT+GGG - chr2_4:3436292-3436311 None:intergenic 25.0%
! TTAGTTAATCAAACAAGTGA+AGG + chr2_4:3436296-3436315 Msa0308990:three_prime_UTR 25.0%
! TAGTTAATCAAACAAGTGAA+GGG + chr2_4:3436297-3436316 Msa0308990:three_prime_UTR 25.0%
TAAGATAAAAGGAGAGAAAG+AGG + chr2_4:3431524-3431543 Msa0308990:five_prime_UTR 30.0%
AAGATAAAAGGAGAGAAAGA+GGG + chr2_4:3431525-3431544 Msa0308990:five_prime_UTR 30.0%
AGAAGAAAGAAACAGAAAGA+GGG + chr2_4:3431569-3431588 Msa0308990:five_prime_UTR 30.0%
AGTTTCATAAATTGAAGAGG+AGG - chr2_4:3431778-3431797 None:intergenic 30.0%
CTTGATATACTCACTGAATT+TGG + chr2_4:3432157-3432176 Msa0308990:CDS 30.0%
TCAGTCACATTAATTGAGAA+GGG - chr2_4:3432252-3432271 None:intergenic 30.0%
! TAATTTGTCACTAAGATAGG+GGG - chr2_4:3432445-3432464 None:intergenic 30.0%
! GTAATTTGTCACTAAGATAG+GGG - chr2_4:3432446-3432465 None:intergenic 30.0%
! CTGTAATTTGTCACTAAGAT+AGG - chr2_4:3432448-3432467 None:intergenic 30.0%
CTATCTTAGTGACAAATTAC+AGG + chr2_4:3432446-3432465 Msa0308990:intron 30.0%
! TTTTCAACATCCACAACTTT+TGG + chr2_4:3432477-3432496 Msa0308990:intron 30.0%
AATTCCAAAACCAAAAGTTG+TGG - chr2_4:3432490-3432509 None:intergenic 30.0%
TTTCAAATAAATGTTGGAGG+TGG - chr2_4:3432516-3432535 None:intergenic 30.0%
ATCTGTTATCATCAATCTAG+GGG - chr2_4:3432587-3432606 None:intergenic 30.0%
CATCTGTTATCATCAATCTA+GGG - chr2_4:3432588-3432607 None:intergenic 30.0%
TCATCTGTTATCATCAATCT+AGG - chr2_4:3432589-3432608 None:intergenic 30.0%
! TTTCTTTTTCTGTAGGAAGT+AGG + chr2_4:3432623-3432642 Msa0308990:intron 30.0%
!!! TGCAGTTAGTTTTATTCCTT+AGG - chr2_4:3432671-3432690 None:intergenic 30.0%
AAAAGTAGATATGTCGATCA+GGG - chr2_4:3433045-3433064 None:intergenic 30.0%
CAGGAAAATTGTGGATATAA+TGG - chr2_4:3433111-3433130 None:intergenic 30.0%
AAACAAATGTGGTTGCTTAA+GGG - chr2_4:3433316-3433335 None:intergenic 30.0%
ATCAGACCTTCTCATTTAAA+AGG - chr2_4:3433508-3433527 None:intergenic 30.0%
GAATCAAATGATAGCTATTG+GGG + chr2_4:3433736-3433755 Msa0308990:intron 30.0%
! GAATGGTTATCCTTGATTTT+TGG - chr2_4:3433855-3433874 None:intergenic 30.0%
ACCATTCTGTTAATGTTTAG+TGG + chr2_4:3433868-3433887 Msa0308990:intron 30.0%
! CTATCTGGTTGATTAATTTG+TGG + chr2_4:3433950-3433969 Msa0308990:intron 30.0%
TGAACTTTAATAAATGCTGC+TGG - chr2_4:3434183-3434202 None:intergenic 30.0%
ATCAAACTTCCAAATCAATG+GGG - chr2_4:3434243-3434262 None:intergenic 30.0%
GATCAAACTTCCAAATCAAT+GGG - chr2_4:3434244-3434263 None:intergenic 30.0%
AGATCAAACTTCCAAATCAA+TGG - chr2_4:3434245-3434264 None:intergenic 30.0%
!! TTATCGTTTTCTCCGTTTTT+TGG + chr2_4:3434497-3434516 Msa0308990:intron 30.0%
CATGTACAAAGACCAAAAAA+CGG - chr2_4:3434512-3434531 None:intergenic 30.0%
AAAAGATCAGGTCAAGTATA+TGG - chr2_4:3434594-3434613 None:intergenic 30.0%
TTGTCTTTGCTCTAATTAGA+TGG + chr2_4:3434635-3434654 Msa0308990:intron 30.0%
TGTCTTTGCTCTAATTAGAT+GGG + chr2_4:3434636-3434655 Msa0308990:intron 30.0%
! AATTTTCACGATTTGTAACC+TGG - chr2_4:3434755-3434774 None:intergenic 30.0%
ACAATAGATCGCAATAGTTA+AGG - chr2_4:3434783-3434802 None:intergenic 30.0%
ACAAAAAGAAACTGGAGTTT+GGG - chr2_4:3435028-3435047 None:intergenic 30.0%
AACAAAAAGAAACTGGAGTT+TGG - chr2_4:3435029-3435048 None:intergenic 30.0%
AAAACGGAACAAAAAGAAAC+TGG - chr2_4:3435036-3435055 None:intergenic 30.0%
! CTTTTTGCACTAGTGAAATA+TGG + chr2_4:3435232-3435251 Msa0308990:intron 30.0%
!! CTAATTTTAAGTGTCATCCT+CGG + chr2_4:3435306-3435325 Msa0308990:intron 30.0%
TATCAAAAGGGGAATATTGT+TGG + chr2_4:3435507-3435526 Msa0308990:intron 30.0%
ATCAAAAGGGGAATATTGTT+GGG + chr2_4:3435508-3435527 Msa0308990:intron 30.0%
! AAAGATAAGCAGAAGTTTTG+AGG - chr2_4:3435657-3435676 None:intergenic 30.0%
CTCATCAAAAATATAGGTCA+AGG - chr2_4:3435835-3435854 None:intergenic 30.0%
!! CTTGACCTATATTTTTGATG+AGG + chr2_4:3435833-3435852 Msa0308990:CDS 30.0%
ACTATAGTCCAAGTTTAGAA+AGG - chr2_4:3435881-3435900 None:intergenic 30.0%
ACAACAAACTACTCCATAAA+TGG - chr2_4:3435916-3435935 None:intergenic 30.0%
! TCTGCATTGATAGTATCTTT+GGG - chr2_4:3435948-3435967 None:intergenic 30.0%
! TTCTGCATTGATAGTATCTT+TGG - chr2_4:3435949-3435968 None:intergenic 30.0%
ATACTTGGTTAGATAAGTAG+GGG + chr2_4:3436097-3436116 Msa0308990:three_prime_UTR 30.0%
! TTGTTGTTGGAGTTATACTA+TGG + chr2_4:3436148-3436167 Msa0308990:three_prime_UTR 30.0%
CTTGTTTGATTAACTAATGC+TGG - chr2_4:3436293-3436312 None:intergenic 30.0%
CAGAAGAAAGAAACAGAAAG+AGG + chr2_4:3431568-3431587 Msa0308990:five_prime_UTR 35.0%
TTCATAAATTGAAGAGGAGG+AGG - chr2_4:3431775-3431794 None:intergenic 35.0%
GAAACTCAAGTACTCCTTAA+TGG + chr2_4:3431792-3431811 Msa0308990:CDS 35.0%
ATTTGAGCAACATACTGTCT+GGG - chr2_4:3431933-3431952 None:intergenic 35.0%
AATTTGAGCAACATACTGTC+TGG - chr2_4:3431934-3431953 None:intergenic 35.0%
TGATTTAGAAGAGAAGCAGT+AGG - chr2_4:3432013-3432032 None:intergenic 35.0%
CATTAATTGAGAAGGGTAGT+TGG - chr2_4:3432245-3432264 None:intergenic 35.0%
GTCAGTCACATTAATTGAGA+AGG - chr2_4:3432253-3432272 None:intergenic 35.0%
CACATGTAGTAAGTACGTAA+CGG - chr2_4:3432284-3432303 None:intergenic 35.0%
TACACTTGTGTTCAGAATGA+GGG - chr2_4:3432362-3432381 None:intergenic 35.0%
TTACACTTGTGTTCAGAATG+AGG - chr2_4:3432363-3432382 None:intergenic 35.0%
TGTAATAGCCCTTCATTGTT+TGG + chr2_4:3432378-3432397 Msa0308990:intron 35.0%
GTAATAGCCCTTCATTGTTT+GGG + chr2_4:3432379-3432398 Msa0308990:intron 35.0%
GAGAATTCCCAAACAATGAA+GGG - chr2_4:3432389-3432408 None:intergenic 35.0%
TGAGAATTCCCAAACAATGA+AGG - chr2_4:3432390-3432409 None:intergenic 35.0%
ATTGTTTGGGAATTCTCACT+TGG + chr2_4:3432392-3432411 Msa0308990:intron 35.0%
AATTTGTCACTAAGATAGGG+GGG - chr2_4:3432444-3432463 None:intergenic 35.0%
!!! ACATCCACAACTTTTGGTTT+TGG + chr2_4:3432483-3432502 Msa0308990:intron 35.0%
ATATTCTAGATCTGCACCTA+AGG + chr2_4:3432652-3432671 Msa0308990:intron 35.0%
! AGATATTTTACATGAAGCCC+GGG - chr2_4:3432982-3433001 None:intergenic 35.0%
! GAGATATTTTACATGAAGCC+CGG - chr2_4:3432983-3433002 None:intergenic 35.0%
CAAAAGTAGATATGTCGATC+AGG - chr2_4:3433046-3433065 None:intergenic 35.0%
! ATATCCACAATTTTCCTGCT+TGG + chr2_4:3433113-3433132 Msa0308990:intron 35.0%
TTAAGCTTACGGGAAAAGTA+AGG - chr2_4:3433141-3433160 None:intergenic 35.0%
! TGATTGTCGTTTATCCATTG+CGG + chr2_4:3433234-3433253 Msa0308990:CDS 35.0%
!!! CTAATTTTAACTCACCGCAA+TGG - chr2_4:3433251-3433270 None:intergenic 35.0%
GAAACAAATGTGGTTGCTTA+AGG - chr2_4:3433317-3433336 None:intergenic 35.0%
! TGAGGAATCTGAAACAAATG+TGG - chr2_4:3433327-3433346 None:intergenic 35.0%
TTGTTTCAGATTCCTCAGTA+TGG + chr2_4:3433330-3433349 Msa0308990:intron 35.0%
! AGATAATGGCATTAAGCATG+TGG + chr2_4:3433572-3433591 Msa0308990:CDS 35.0%
AAATGATAGCTATTGGGGTT+TGG + chr2_4:3433741-3433760 Msa0308990:intron 35.0%
TCATGTGATCCCAAAAATCA+AGG + chr2_4:3433842-3433861 Msa0308990:intron 35.0%
GCCACTAAACATTAACAGAA+TGG - chr2_4:3433872-3433891 None:intergenic 35.0%
AACGGAAGATGAATTCTATC+TGG + chr2_4:3433935-3433954 Msa0308990:intron 35.0%
!! TTTCTGGTTCATTTGAAAGG+AGG + chr2_4:3434274-3434293 Msa0308990:intron 35.0%
AAACGGAGAAAACGATAACA+GGG - chr2_4:3434495-3434514 None:intergenic 35.0%
AAAACGGAGAAAACGATAAC+AGG - chr2_4:3434496-3434515 None:intergenic 35.0%
ATGTAGTTCCACTACTTACA+AGG - chr2_4:3434683-3434702 None:intergenic 35.0%
AACTTGAAGGAAATTGAAGG+TGG + chr2_4:3434714-3434733 Msa0308990:CDS 35.0%
! AATTGAAGGTGGAACTGTTT+TGG + chr2_4:3434725-3434744 Msa0308990:CDS 35.0%
TAGATCGCAATAGTTAAGGT+CGG - chr2_4:3434779-3434798 None:intergenic 35.0%
!! TTCTTATGGCTTGTTGTATC+TGG + chr2_4:3434833-3434852 Msa0308990:intron 35.0%
! CTGACAATTGAACACTTTTC+AGG + chr2_4:3434863-3434882 Msa0308990:intron 35.0%
AAATCGATGATTGGACGAAA+AGG + chr2_4:3434906-3434925 Msa0308990:CDS 35.0%
TCATGAGATGCTTGAAAGAT+TGG + chr2_4:3434944-3434963 Msa0308990:CDS 35.0%
ATCCTCCCCTAAAATGAATA+GGG - chr2_4:3435192-3435211 None:intergenic 35.0%
CGAGGATGACACTTAAAATT+AGG - chr2_4:3435308-3435327 None:intergenic 35.0%
GAATATTGTTGGGAGTTTGT+GGG + chr2_4:3435518-3435537 Msa0308990:intron 35.0%
AATATTGTTGGGAGTTTGTG+GGG + chr2_4:3435519-3435538 Msa0308990:intron 35.0%
AAACTTCTGCTTATCTTTCG+TGG + chr2_4:3435659-3435678 Msa0308990:intron 35.0%
ATCATATGAACGTAGTCAAC+AGG - chr2_4:3435780-3435799 None:intergenic 35.0%
TACGTTCATATGATGCAGAT+TGG + chr2_4:3435786-3435805 Msa0308990:intron 35.0%
! TGCATTGATAGTATCTTTGG+GGG - chr2_4:3435946-3435965 None:intergenic 35.0%
! CTGCATTGATAGTATCTTTG+GGG - chr2_4:3435947-3435966 None:intergenic 35.0%
AACGAAATTGCATTTCTTGC+TGG + chr2_4:3435986-3436005 Msa0308990:three_prime_UTR 35.0%
TACTTGGTTAGATAAGTAGG+GGG + chr2_4:3436098-3436117 Msa0308990:three_prime_UTR 35.0%
GAAATTAGAAATTTGCGGGA+TGG + chr2_4:3436266-3436285 Msa0308990:three_prime_UTR 35.0%
! ACGATGATGATGAGCCAAAT+TGG + chr2_4:3431708-3431727 Msa0308990:CDS 40.0%
GAACAGGAGTGAAACCAATT+TGG - chr2_4:3431725-3431744 None:intergenic 40.0%
! CAATTTACTGCTTGCTGAAC+AGG - chr2_4:3431741-3431760 None:intergenic 40.0%
ATAAATTGAAGAGGAGGAGG+AGG - chr2_4:3431772-3431791 None:intergenic 40.0%
ACAATTGACAGTCCTTGAGA+AGG - chr2_4:3431893-3431912 None:intergenic 40.0%
GTATGTTGCTCAAATTCCTC+AGG + chr2_4:3431938-3431957 Msa0308990:CDS 40.0%
! ATACTTCCAAGTTGGAAAGC+TGG - chr2_4:3432069-3432088 None:intergenic 40.0%
AGCTTTCCAACTTGGAAGTA+TGG + chr2_4:3432068-3432087 Msa0308990:intron 40.0%
CTGAAACCATACTTCCAAGT+TGG - chr2_4:3432077-3432096 None:intergenic 40.0%
! ACTTGGAAGTATGGTTTCAG+AGG + chr2_4:3432077-3432096 Msa0308990:CDS 40.0%
TATCAAGTCCTACGATACCA+AGG - chr2_4:3432144-3432163 None:intergenic 40.0%
TATACTCACTGAATTTGGCC+AGG + chr2_4:3432162-3432181 Msa0308990:CDS 40.0%
CGTTACGTACTTACTACATG+TGG + chr2_4:3432282-3432301 Msa0308990:intron 40.0%
TGTGTTCAGAATGAGGGAAT+GGG - chr2_4:3432356-3432375 None:intergenic 40.0%
TTGTGTTCAGAATGAGGGAA+TGG - chr2_4:3432357-3432376 None:intergenic 40.0%
! GGTATAGTGTCTGAGATGTT+GGG - chr2_4:3432422-3432441 None:intergenic 40.0%
ATTTGTCACTAAGATAGGGG+GGG - chr2_4:3432443-3432462 None:intergenic 40.0%
GCTAGAAACCACCTCTAAAT+TGG + chr2_4:3432557-3432576 Msa0308990:intron 40.0%
TAGTCAACACTTATCAGCCT+CGG - chr2_4:3432836-3432855 None:intergenic 40.0%
TCTTTAACTCGTCAGAACTG+TGG - chr2_4:3432887-3432906 None:intergenic 40.0%
AGCTTGCAAAAATGCCTCAA+TGG + chr2_4:3433382-3433401 Msa0308990:CDS 40.0%
! GGCTTTTCTTTTGTCCATTG+AGG - chr2_4:3433399-3433418 None:intergenic 40.0%
TTTCCTTCTTACTGTTCAGC+TGG + chr2_4:3433533-3433552 Msa0308990:intron 40.0%
TTCCTTCTTACTGTTCAGCT+GGG + chr2_4:3433534-3433553 Msa0308990:intron 40.0%
CGCGTAAAGCTTATAATCTC+TGG - chr2_4:3434105-3434124 None:intergenic 40.0%
ATAAATGCTGCTGGTCAACA+TGG - chr2_4:3434174-3434193 None:intergenic 40.0%
! CAATTAGGACCCCATTGATT+TGG + chr2_4:3434231-3434250 Msa0308990:intron 40.0%
AAGCAGAGTTCAATGGCAAT+AGG - chr2_4:3434352-3434371 None:intergenic 40.0%
TATCACGAAGCAGAGTTCAA+TGG - chr2_4:3434359-3434378 None:intergenic 40.0%
ATCTTGGACCTTGTAAGTAG+TGG + chr2_4:3434672-3434691 Msa0308990:CDS 40.0%
! TACGAAACTGCTGCTTCTTA+TGG + chr2_4:3434819-3434838 Msa0308990:intron 40.0%
TGAGATGCTTGAAAGATTGG+AGG + chr2_4:3434947-3434966 Msa0308990:CDS 40.0%
AAAGAAACTGGAGTTTGGGA+GGG - chr2_4:3435024-3435043 None:intergenic 40.0%
AAAAGAAACTGGAGTTTGGG+AGG - chr2_4:3435025-3435044 None:intergenic 40.0%
CTTCTAATTGTAGATTCGGC+AGG + chr2_4:3435056-3435075 Msa0308990:intron 40.0%
! TCCCCAACCCTATTCATTTT+AGG + chr2_4:3435182-3435201 Msa0308990:intron 40.0%
CCCTAAAATGAATAGGGTTG+GGG - chr2_4:3435186-3435205 None:intergenic 40.0%
! CCCCAACCCTATTCATTTTA+GGG + chr2_4:3435183-3435202 Msa0308990:intron 40.0%
CCCCTAAAATGAATAGGGTT+GGG - chr2_4:3435187-3435206 None:intergenic 40.0%
! CCCAACCCTATTCATTTTAG+GGG + chr2_4:3435184-3435203 Msa0308990:intron 40.0%
TCCCCTAAAATGAATAGGGT+TGG - chr2_4:3435188-3435207 None:intergenic 40.0%
!! AACCCTATTCATTTTAGGGG+AGG + chr2_4:3435187-3435206 Msa0308990:intron 40.0%
GATCCTCCCCTAAAATGAAT+AGG - chr2_4:3435193-3435212 None:intergenic 40.0%
CTTTGGCACACATATGACTA+TGG - chr2_4:3435407-3435426 None:intergenic 40.0%
AGTCATATGTGTGCCAAAGA+AGG + chr2_4:3435408-3435427 Msa0308990:CDS 40.0%
GACTTGTACAATGCCTTCTT+TGG - chr2_4:3435424-3435443 None:intergenic 40.0%
GTCTATACAGCAATTGAGAG+CGG + chr2_4:3435441-3435460 Msa0308990:CDS 40.0%
GGAATATTGTTGGGAGTTTG+TGG + chr2_4:3435517-3435536 Msa0308990:intron 40.0%
AAAGGACAACAGGAATCACA+CGG - chr2_4:3435600-3435619 None:intergenic 40.0%
GTTCATATGATGCAGATTGG+AGG + chr2_4:3435789-3435808 Msa0308990:intron 40.0%
! TTGATAGTATCTTTGGGGGT+GGG - chr2_4:3435942-3435961 None:intergenic 40.0%
! ATTGATAGTATCTTTGGGGG+TGG - chr2_4:3435943-3435962 None:intergenic 40.0%
AGATATTCCCACTTCTGCAT+CGG + chr2_4:3436016-3436035 Msa0308990:three_prime_UTR 40.0%
ATAAGATGACCAGCTCATTG+AGG - chr2_4:3436223-3436242 None:intergenic 40.0%
CTTTGCTTGGCAAACCAAGA+CGG - chr2_4:3431845-3431864 None:intergenic 45.0%
!! TTGGTTTGCCAAGCAAAGGT+CGG + chr2_4:3431847-3431866 Msa0308990:CDS 45.0%
CTTGAGAAGGTCGAGTGTAT+CGG - chr2_4:3431880-3431899 None:intergenic 45.0%
GTTGCTCAAATTCCTCAGGT+AGG + chr2_4:3431942-3431961 Msa0308990:intron 45.0%
TACGTTACGTTACCTACCTG+AGG - chr2_4:3431957-3431976 None:intergenic 45.0%
TACACTCCAGCTTTCCAACT+TGG + chr2_4:3432060-3432079 Msa0308990:intron 45.0%
TTATCCGGAGATCTTGACCT+TGG + chr2_4:3432124-3432143 Msa0308990:CDS 45.0%
GATACCAAGGTCAAGATCTC+CGG - chr2_4:3432131-3432150 None:intergenic 45.0%
GATCTTGACCTTGGTATCGT+AGG + chr2_4:3432133-3432152 Msa0308990:CDS 45.0%
GAATGGGCGCTATGTCTAAT+AGG - chr2_4:3432340-3432359 None:intergenic 45.0%
! GGGTATAGTGTCTGAGATGT+TGG - chr2_4:3432423-3432442 None:intergenic 45.0%
!! TTCTTTGAAGCACCCATACC+CGG + chr2_4:3432961-3432980 Msa0308990:intron 45.0%
TTTACATGAAGCCCGGGTAT+GGG - chr2_4:3432976-3432995 None:intergenic 45.0%
! TTTTACATGAAGCCCGGGTA+TGG - chr2_4:3432977-3432996 None:intergenic 45.0%
GGTTCCAAGCAGGAAAATTG+TGG - chr2_4:3433120-3433139 None:intergenic 45.0%
GGAAAAGTAAGGTTCCAAGC+AGG - chr2_4:3433130-3433149 None:intergenic 45.0%
CGATCTTATCATTGTGCACG+AGG + chr2_4:3433198-3433217 Msa0308990:CDS 45.0%
TATCATTGTGCACGAGGCTT+TGG + chr2_4:3433204-3433223 Msa0308990:CDS 45.0%
AATCCAGTTGCAACTCTCAG+AGG - chr2_4:3433420-3433439 None:intergenic 45.0%
GATAGCTATTGGGGTTTGGA+AGG + chr2_4:3433745-3433764 Msa0308990:intron 45.0%
CTGGTTCATTTGAAAGGAGG+AGG + chr2_4:3434277-3434296 Msa0308990:intron 45.0%
TTTGTTAGACTATCGAGCCC+AGG + chr2_4:3434318-3434337 Msa0308990:intron 45.0%
GAACTCTGCTTCGTGATAAC+TGG + chr2_4:3434361-3434380 Msa0308990:intron 45.0%
CAGCATCAACTAGATGGAGA+TGG - chr2_4:3434568-3434587 None:intergenic 45.0%
GGGAATTGCTGATGCTATCT+TGG + chr2_4:3434656-3434675 Msa0308990:CDS 45.0%
!!! TGGAACTGTTTTGGAAAGCC+AGG + chr2_4:3434734-3434753 Msa0308990:CDS 45.0%
! AAAGATTGGAGGCACATCTG+AGG + chr2_4:3434958-3434977 Msa0308990:CDS 45.0%
! AAGATTGGAGGCACATCTGA+GGG + chr2_4:3434959-3434978 Msa0308990:CDS 45.0%
AAGAAACTGGAGTTTGGGAG+GGG - chr2_4:3435023-3435042 None:intergenic 45.0%
CAGGTCACTGCAAATATGAG+AGG + chr2_4:3435075-3435094 Msa0308990:intron 45.0%
! AGTACTGAGCCAACCATCAT+TGG + chr2_4:3435125-3435144 Msa0308990:CDS 45.0%
CAGAAAACGGGACTTACAGT+GGG - chr2_4:3435349-3435368 None:intergenic 45.0%
TCCATCACGCTTGCAGAAAA+CGG - chr2_4:3435362-3435381 None:intergenic 45.0%
! TTTCTGCAAGCGTGATGGAA+AGG + chr2_4:3435363-3435382 Msa0308990:CDS 45.0%
GTGTGATTCCTGTTGTCCTT+TGG + chr2_4:3435599-3435618 Msa0308990:intron 45.0%
GAACGTAGTCAACAGGAAAC+TGG - chr2_4:3435773-3435792 None:intergenic 45.0%
TTGATGAGGAAACTCCCAGA+TGG + chr2_4:3435847-3435866 Msa0308990:CDS 45.0%
GTCCAAGTTTAGAAAGGAGC+TGG - chr2_4:3435875-3435894 None:intergenic 45.0%
! TGATAGTATCTTTGGGGGTG+GGG - chr2_4:3435941-3435960 None:intergenic 45.0%
TTGGTTAGATAAGTAGGGGG+TGG + chr2_4:3436101-3436120 Msa0308990:three_prime_UTR 45.0%
TGGTTAGATAAGTAGGGGGT+GGG + chr2_4:3436102-3436121 Msa0308990:three_prime_UTR 45.0%
!! AATTATAAATTATAAAGTAT+AGG + chr2_4:3434039-3434058 Msa0308990:intron 5.0%
CGGAGACTGGGTTTCCATTA+AGG - chr2_4:3431809-3431828 None:intergenic 50.0%
AAGACGGATCTCTTTCCTGG+CGG - chr2_4:3431829-3431848 None:intergenic 50.0%
ACCAAGACGGATCTCTTTCC+TGG - chr2_4:3431832-3431851 None:intergenic 50.0%
!! CGTCTTGGTTTGCCAAGCAA+AGG + chr2_4:3431843-3431862 Msa0308990:CDS 50.0%
GAAGACATCCGACCTTTGCT+TGG - chr2_4:3431858-3431877 None:intergenic 50.0%
CGATACACTCGACCTTCTCA+AGG + chr2_4:3431878-3431897 Msa0308990:CDS 50.0%
CTAGGGGTCTGCCAATTTAG+AGG - chr2_4:3432571-3432590 None:intergenic 50.0%
! TGTCGCTTCACTTGCCAAGT+TGG - chr2_4:3432724-3432743 None:intergenic 50.0%
!! TCTTTGAAGCACCCATACCC+GGG + chr2_4:3432962-3432981 Msa0308990:intron 50.0%
! AAGCCTCTGAGAGTTGCAAC+TGG + chr2_4:3433414-3433433 Msa0308990:CDS 50.0%
GACCCAGCTGAACAGTAAGA+AGG - chr2_4:3433539-3433558 None:intergenic 50.0%
! GTGGCATTTTCGACTGCTGA+TGG + chr2_4:3433591-3433610 Msa0308990:CDS 50.0%
CAAAGACTATCTCTCACCGC+AGG - chr2_4:3433633-3433652 None:intergenic 50.0%
TGGCAGCAGCATCAACTAGA+TGG - chr2_4:3434574-3434593 None:intergenic 50.0%
GCGAGCAGGAAATCGATGAT+TGG + chr2_4:3434897-3434916 Msa0308990:CDS 50.0%
TATGAGAGGAAGCAGTGCAG+AGG + chr2_4:3435089-3435108 Msa0308990:CDS 50.0%
! TGAGCCAACCATCATTGGCT+GGG + chr2_4:3435130-3435149 Msa0308990:CDS 50.0%
ATCCTCGGTTGTCTATCTGC+AGG + chr2_4:3435321-3435340 Msa0308990:intron 50.0%
TCCTCGGTTGTCTATCTGCA+GGG + chr2_4:3435322-3435341 Msa0308990:intron 50.0%
GCAGAAAACGGGACTTACAG+TGG - chr2_4:3435350-3435369 None:intergenic 50.0%
CCATCACGCTTGCAGAAAAC+GGG - chr2_4:3435361-3435380 None:intergenic 50.0%
TCATGCTTGTCGCACACCAA+AGG - chr2_4:3435618-3435637 None:intergenic 50.0%
ATGATGCAGATTGGAGGCAG+CGG + chr2_4:3435795-3435814 Msa0308990:intron 50.0%
CGCCAGCTCCTTTCTAAACT+TGG + chr2_4:3435870-3435889 Msa0308990:CDS 50.0%
CTACAAGCCGATGCAGAAGT+GGG - chr2_4:3436026-3436045 None:intergenic 50.0%
TTAGATAAGTAGGGGGTGGG+AGG + chr2_4:3436105-3436124 Msa0308990:three_prime_UTR 50.0%
TTCCACCTACCTCAATGAGC+TGG + chr2_4:3436211-3436230 Msa0308990:three_prime_UTR 50.0%
GATGACCAGCTCATTGAGGT+AGG - chr2_4:3436219-3436238 None:intergenic 50.0%
TCTCTTTCCTGGCGGAGACT+GGG - chr2_4:3431821-3431840 None:intergenic 55.0%
ATCTCTTTCCTGGCGGAGAC+TGG - chr2_4:3431822-3431841 None:intergenic 55.0%
GCCAGGAAAGAGATCCGTCT+TGG + chr2_4:3431828-3431847 Msa0308990:CDS 55.0%
! GTTTTGCAGACACGCTGACC+TGG - chr2_4:3432183-3432202 None:intergenic 55.0%
GGGGTCTGCCAATTTAGAGG+TGG - chr2_4:3432568-3432587 None:intergenic 55.0%
TTCACTGACAACTCCTGCCG+AGG + chr2_4:3432816-3432835 Msa0308990:intron 55.0%
CAACACTTATCAGCCTCGGC+AGG - chr2_4:3432832-3432851 None:intergenic 55.0%
!! GTGCACGAGGCTTTGGAGTA+TGG + chr2_4:3433211-3433230 Msa0308990:CDS 55.0%
TTCGACTGCTGATGGAGCAC+TGG + chr2_4:3433599-3433618 Msa0308990:CDS 55.0%
AGGAAGCAGTGCAGAGGAAG+TGG + chr2_4:3435095-3435114 Msa0308990:CDS 55.0%
CTGAGCCAACCATCATTGGC+TGG + chr2_4:3435129-3435148 Msa0308990:CDS 55.0%
GCAACCCAGCCAATGATGGT+TGG - chr2_4:3435137-3435156 None:intergenic 55.0%
! ACCATCATTGGCTGGGTTGC+AGG + chr2_4:3435137-3435156 Msa0308990:CDS 55.0%
ACCTGCAACCCAGCCAATGA+TGG - chr2_4:3435141-3435160 None:intergenic 55.0%
TCCCTGCAGATAGACAACCG+AGG - chr2_4:3435326-3435345 None:intergenic 55.0%
! CCCGTTTTCTGCAAGCGTGA+TGG + chr2_4:3435358-3435377 Msa0308990:CDS 55.0%
GTCGCACACCAAAGGACAAC+AGG - chr2_4:3435610-3435629 None:intergenic 55.0%
CCTACAAGCCGATGCAGAAG+TGG - chr2_4:3436027-3436046 None:intergenic 55.0%
!! CCACTTCTGCATCGGCTTGT+AGG + chr2_4:3436024-3436043 Msa0308990:three_prime_UTR 55.0%
GACCAGCTCATTGAGGTAGG+TGG - chr2_4:3436216-3436235 None:intergenic 55.0%
ATGGAAACCCAGTCTCCGCC+AGG + chr2_4:3431811-3431830 Msa0308990:CDS 60.0%
!! GACTGCTGATGGAGCACTGG+AGG + chr2_4:3433602-3433621 Msa0308990:CDS 60.0%
ACTATCGAGCCCAGGTCTCG+AGG + chr2_4:3434326-3434345 Msa0308990:intron 60.0%
GGCAATAGGCCTCGAGACCT+GGG - chr2_4:3434338-3434357 None:intergenic 60.0%
TGGCAATAGGCCTCGAGACC+TGG - chr2_4:3434339-3434358 None:intergenic 60.0%
AGGCTGCTCTTGTTGCGAGC+AGG + chr2_4:3434883-3434902 Msa0308990:intron 60.0%
GAGGCACATCTGAGGGCGAT+GGG + chr2_4:3434966-3434985 Msa0308990:CDS 60.0%
AGGCACATCTGAGGGCGATG+GGG + chr2_4:3434967-3434986 Msa0308990:CDS 60.0%
GAAAGGAGCTGGCGCCATCT+GGG - chr2_4:3435864-3435883 None:intergenic 60.0%
AGAAAGGAGCTGGCGCCATC+TGG - chr2_4:3435865-3435884 None:intergenic 60.0%
CATCGTCGTCGTCGTCGTCG+CGG - chr2_4:3431694-3431713 None:intergenic 65.0%
! AGCACTGGAGGCAGCTCCTG+CGG + chr2_4:3433614-3433633 Msa0308990:CDS 65.0%
! GGAGGCACATCTGAGGGCGA+TGG + chr2_4:3434965-3434984 Msa0308990:CDS 65.0%
GAGGGCGATGGGGCAGTTCA+CGG + chr2_4:3434977-3434996 Msa0308990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 3431509 3436332 3431509 ID=Msa0308990;Name=Msa0308990
chr2_4 mRNA 3431509 3436332 3431509 ID=Msa0308990-mRNA-1;Parent=Msa0308990;Name=Msa0308990-mRNA-1;_AED=0.10;_eAED=0.10;_QI=121|1|1|1|0.88|0.9|10|433|404
chr2_4 exon 3431509 3431959 3431509 ID=Msa0308990-mRNA-1:exon:998;Parent=Msa0308990-mRNA-1
chr2_4 exon 3432070 3432183 3432070 ID=Msa0308990-mRNA-1:exon:999;Parent=Msa0308990-mRNA-1
chr2_4 exon 3433190 3433255 3433190 ID=Msa0308990-mRNA-1:exon:1000;Parent=Msa0308990-mRNA-1
chr2_4 exon 3433339 3433446 3433339 ID=Msa0308990-mRNA-1:exon:1001;Parent=Msa0308990-mRNA-1
chr2_4 exon 3433552 3433635 3433552 ID=Msa0308990-mRNA-1:exon:1002;Parent=Msa0308990-mRNA-1
chr2_4 exon 3434654 3434755 3434654 ID=Msa0308990-mRNA-1:exon:1003;Parent=Msa0308990-mRNA-1
chr2_4 exon 3434885 3434998 3434885 ID=Msa0308990-mRNA-1:exon:1004;Parent=Msa0308990-mRNA-1
chr2_4 exon 3435078 3435158 3435078 ID=Msa0308990-mRNA-1:exon:1005;Parent=Msa0308990-mRNA-1
chr2_4 exon 3435343 3435462 3435343 ID=Msa0308990-mRNA-1:exon:1006;Parent=Msa0308990-mRNA-1
chr2_4 exon 3435804 3436332 3435804 ID=Msa0308990-mRNA-1:exon:1007;Parent=Msa0308990-mRNA-1
chr2_4 five_prime_UTR 3431509 3431629 3431509 ID=Msa0308990-mRNA-1:five_prime_utr;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3431630 3431959 3431630 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3432070 3432183 3432070 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3433190 3433255 3433190 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3433339 3433446 3433339 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3433552 3433635 3433552 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3434654 3434755 3434654 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3434885 3434998 3434885 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3435078 3435158 3435078 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3435343 3435462 3435343 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 CDS 3435804 3435899 3435804 ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1
chr2_4 three_prime_UTR 3435900 3436332 3435900 ID=Msa0308990-mRNA-1:three_prime_utr;Parent=Msa0308990-mRNA-1
Gene Sequence

>Msa0308990

ATGTCATTTTTCTCAATGCACTCGTGCTTCAGATTCATTCAGATAGTAGTAATATTGGCGACCGCGACGACGACGACGACGATGATGATGAGCCAAATTGGTTTCACTCCTGTTCAGCAAGCAGTAAATTGCTGTTACGCCTCCTCCTCCTCTTCAATTTATGAAACTCAAGTACTCCTTAATGGAAACCCAGTCTCCGCCAGGAAAGAGATCCGTCTTGGTTTGCCAAGCAAAGGTCGGATGTCTTCCGATACACTCGACCTTCTCAAGGACTGTCAATTGTCTGTCAAGCAAGTCAATCCCAGACAGTATGTTGCTCAAATTCCTCAGCTTTCCAACTTGGAAGTATGGTTTCAGAGGCCCAAAGACATTGTAAGAAAATTGTTATCCGGAGATCTTGACCTTGGTATCGTAGGACTTGATATACTCACTGAATTTGGCCAGGGCAATGACGATCTTATCATTGTGCACGAGGCTTTGGAGTATGGTGATTGTCGTTTATCCATTGCGATTCCTCAGTATGGAATATTTGAAAATGTAAATTCACTAGAGGAGCTTGCAAAAATGCCTCAATGGACAAAAGAAAAGCCTCTGAGAGTTGCAACTGGATTCACCTATCTGGGTCCTAAATTTATGAAAGATAATGGCATTAAGCATGTGGCATTTTCGACTGCTGATGGAGCACTGGAGGCAGCTCCTGCGATGGGAATTGCTGATGCTATCTTGGACCTTGTAAGTAGTGGAACTACATTGAAAGAAAATAACTTGAAGGAAATTGAAGGTGGAACTGTTTTGGAAAGCCAGGCTGCTCTTGTTGCGAGCAGGAAATCGATGATTGGACGAAAAGGAGTACTTGAAACAACTCATGAGATGCTTGAAAGATTGGAGGCACATCTGAGGGCGATGGGGCAGTTCACGGTCACTGCAAATATGAGAGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAGTACTGAGCCAACCATCATTGGCTGGGTTGCAGGGACCCACTGTAAGTCCCGTTTTCTGCAAGCGTGATGGAAAGGTATCAGCAGACTACTATGCCATAGTCATATGTGTGCCAAAGAAGGCATTGTACAAGTCTATACAGCAATTGAGAGCGATTGGAGGCAGCGGAGTTCTCATATCACCCTTGACCTATATTTTTGATGAGGAAACTCCCAGATGGCGCCAGCTCCTTTCTAAACTTGGACTATAG

Protein sequence

>Msa0308990

MSFFSMHSCFRFIQIVVILATATTTTTMMMSQIGFTPVQQAVNCCYASSSSSIYETQVLLNGNPVSARKEIRLGLPSKGRMSSDTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDILTEFGQGNDDLIIVHEALEYGDCRLSIAIPQYGIFENVNSLEELAKMPQWTKEKPLRVATGFTYLGPKFMKDNGIKHVAFSTADGALEAAPAMGIADAILDLVSSGTTLKENNLKEIEGGTVLESQAALVASRKSMIGRKGVLETTHEMLERLEAHLRAMGQFTVTANMRGSSAEEVAERVLSQPSLAGLQGPTVSPVFCKRDGKVSADYYAIVICVPKKALYKSIQQLRAIGGSGVLISPLTYIFDEETPRWRQLLSKLGL*