Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0308990 | XP_003610300.1 | 91.755 | 376 | 25 | 2 | 29 | 404 | 4 | 373 | 0.0 | 705 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0308990 | sp|Q8GSJ1|HIS1B_ARATH | 79.292 | 367 | 66 | 2 | 42 | 404 | 53 | 413 | 0.0 | 610 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0073820 | Msa0308990 | 0.804299 | 2.308814e-49 | -8.615850e-47 |
Msa0094700 | Msa0308990 | 0.806768 | 7.007487e-50 | -8.615850e-47 |
Msa0171780 | Msa0308990 | 0.804770 | 1.841413e-49 | -8.615850e-47 |
Msa0171930 | Msa0308990 | 0.807365 | 5.238539e-50 | -8.615850e-47 |
Msa0188430 | Msa0308990 | 0.863615 | 2.194299e-64 | -8.615850e-47 |
Msa0231040 | Msa0308990 | 0.856610 | 2.864641e-62 | -8.615850e-47 |
Msa0266010 | Msa0308990 | 0.819831 | 9.446813e-53 | -8.615850e-47 |
Msa0270560 | Msa0308990 | 0.877014 | 8.823053e-69 | -8.615850e-47 |
Msa0282070 | Msa0308990 | 0.817765 | 2.782730e-52 | -8.615850e-47 |
Msa0282090 | Msa0308990 | 0.805129 | 1.549676e-49 | -8.615850e-47 |
Msa0303950 | Msa0308990 | 0.826719 | 2.325006e-54 | -8.615850e-47 |
Msa0308990 | Msa0335740 | 0.805927 | 1.054100e-49 | -8.615850e-47 |
Msa0308990 | Msa0379450 | 0.803984 | 2.684769e-49 | -8.615850e-47 |
Msa0308990 | Msa0486200 | 0.805944 | 1.045140e-49 | -8.615850e-47 |
Msa0308990 | Msa0515090 | 0.813968 | 1.956381e-51 | -8.615850e-47 |
Msa0308990 | Msa0689400 | 0.822630 | 2.137104e-53 | -8.615850e-47 |
Msa0308990 | Msa0805940 | 0.806472 | 8.091739e-50 | -8.615850e-47 |
Msa0308990 | Msa0968010 | 0.833650 | 4.722145e-56 | -8.615850e-47 |
Msa0308990 | Msa1011240 | 0.810487 | 1.124913e-50 | -8.615850e-47 |
Msa0308990 | Msa1087500 | 0.807944 | 3.946813e-50 | -8.615850e-47 |
Msa0308990 | Msa1211040 | 0.812162 | 4.871196e-51 | -8.615850e-47 |
Msa0308990 | Msa1408770 | 0.809238 | 2.088103e-50 | -8.615850e-47 |
Msa0308990 | Msa1430010 | 0.804879 | 1.747774e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0308990 | MtrunA17_Chr4g0073831 | 91.755 | 376 | 25 | 2 | 29 | 404 | 4 | 373 | 0.0 | 705 |
Msa0308990 | MtrunA17_Chr2g0277331 | 81.951 | 410 | 24 | 6 | 29 | 404 | 6 | 399 | 0.0 | 642 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0308990 | AT1G09795.1 | 79.292 | 367 | 66 | 2 | 42 | 404 | 53 | 413 | 0.0 | 610 |
Msa0308990 | AT1G58080.1 | 82.196 | 337 | 60 | 0 | 68 | 404 | 75 | 411 | 0.0 | 592 |
Find 130 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATATATGTGTTCCATTTA+TGG | 0.114201 | 2_4:+3435900 | Msa0308990:three_prime_UTR |
CCATTATCTTTCATAAATTT+AGG | 0.178616 | 2_4:-3433558 | None:intergenic |
TTCTGCATTGATAGTATCTT+TGG | 0.181524 | 2_4:-3435946 | None:intergenic |
CTTGATATACTCACTGAATT+TGG | 0.209989 | 2_4:+3432157 | Msa0308990:CDS |
ATCTCTTTCCTGGCGGAGAC+TGG | 0.219395 | 2_4:-3431819 | None:intergenic |
ACAACAAACTACTCCATAAA+TGG | 0.220482 | 2_4:-3435913 | None:intergenic |
GAAACTCAAGTACTCCTTAA+TGG | 0.221771 | 2_4:+3431792 | Msa0308990:CDS |
CGGAGACTGGGTTTCCATTA+AGG | 0.239700 | 2_4:-3431806 | None:intergenic |
ACCATCATTGGCTGGGTTGC+AGG | 0.240929 | 2_4:+3435137 | Msa0308990:CDS |
AATTGAAGGTGGAACTGTTT+TGG | 0.258121 | 2_4:+3434725 | Msa0308990:CDS |
AGCTTTCCAACTTGGAAGTA+TGG | 0.273300 | 2_4:+3432068 | Msa0308990:intron |
GACTTGTACAATGCCTTCTT+TGG | 0.281592 | 2_4:-3435421 | None:intergenic |
CCACTTCTGCATCGGCTTGT+AGG | 0.290273 | 2_4:+3436024 | Msa0308990:three_prime_UTR |
TCTGCATTGATAGTATCTTT+GGG | 0.295957 | 2_4:-3435945 | None:intergenic |
AACGAAATTGCATTTCTTGC+TGG | 0.297884 | 2_4:+3435986 | Msa0308990:three_prime_UTR |
CAATTTACTGCTTGCTGAAC+AGG | 0.300223 | 2_4:-3431738 | None:intergenic |
CGCCAGCTCCTTTCTAAACT+TGG | 0.303940 | 2_4:+3435870 | Msa0308990:CDS |
CCTAAATTTATGAAAGATAA+TGG | 0.318633 | 2_4:+3433558 | Msa0308990:CDS |
ACTTATCTAACCAAGTATTA+TGG | 0.318977 | 2_4:-3436092 | None:intergenic |
AAACCAAATAATAAGATAAA+AGG | 0.320423 | 2_4:+3431513 | Msa0308990:five_prime_UTR |
AGAAAGGAGCTGGCGCCATC+TGG | 0.330813 | 2_4:-3435862 | None:intergenic |
CATTCAGATAGTAGTAATAT+TGG | 0.333635 | 2_4:+3431665 | Msa0308990:CDS |
CTTTGGCACACATATGACTA+TGG | 0.334395 | 2_4:-3435404 | None:intergenic |
TTGTTTCAGATTCCTCAGTA+TGG | 0.337830 | 2_4:+3433330 | Msa0308990:intron |
CTTGTTTGATTAACTAATGC+TGG | 0.342865 | 2_4:-3436290 | None:intergenic |
GTGCACGAGGCTTTGGAGTA+TGG | 0.349565 | 2_4:+3433211 | Msa0308990:CDS |
ACGATGATGATGAGCCAAAT+TGG | 0.350592 | 2_4:+3431708 | Msa0308990:CDS |
ACCAAGACGGATCTCTTTCC+TGG | 0.352781 | 2_4:-3431829 | None:intergenic |
TATCATTGTGCACGAGGCTT+TGG | 0.356493 | 2_4:+3433204 | Msa0308990:CDS |
GAACAGGAGTGAAACCAATT+TGG | 0.368425 | 2_4:-3431722 | None:intergenic |
TTTAACTTCAACATTGTTGT+TGG | 0.383014 | 2_4:+3436135 | Msa0308990:three_prime_UTR |
TCATGAGATGCTTGAAAGAT+TGG | 0.385558 | 2_4:+3434944 | Msa0308990:CDS |
TCCATCACGCTTGCAGAAAA+CGG | 0.387763 | 2_4:-3435359 | None:intergenic |
GGGAATTGCTGATGCTATCT+TGG | 0.397741 | 2_4:+3434656 | Msa0308990:CDS |
TTCATAAATTGAAGAGGAGG+AGG | 0.403307 | 2_4:-3431772 | None:intergenic |
CCATCACGCTTGCAGAAAAC+GGG | 0.416870 | 2_4:-3435358 | None:intergenic |
ATTGAAAGAAAATAACTTGA+AGG | 0.424383 | 2_4:+3434701 | Msa0308990:CDS |
TAAGATAAAAGGAGAGAAAG+AGG | 0.424595 | 2_4:+3431524 | Msa0308990:five_prime_UTR |
ATGTGAAATTAGAAATTTGC+GGG | 0.426209 | 2_4:+3436262 | Msa0308990:three_prime_UTR |
GAGGCACATCTGAGGGCGAT+GGG | 0.428682 | 2_4:+3434966 | Msa0308990:CDS |
TAATACTTGGTTAGATAAGT+AGG | 0.438205 | 2_4:+3436095 | Msa0308990:three_prime_UTR |
CAGAAGAAAGAAACAGAAAG+AGG | 0.441421 | 2_4:+3431568 | Msa0308990:five_prime_UTR |
TTGTTGTTGGAGTTATACTA+TGG | 0.447465 | 2_4:+3436148 | Msa0308990:three_prime_UTR |
ATTGTAAGAAAATTGTTATC+CGG | 0.447935 | 2_4:+3432109 | Msa0308990:CDS |
TTAATTCTGTCCATAATACT+TGG | 0.449057 | 2_4:+3436082 | Msa0308990:three_prime_UTR |
GGAGGCACATCTGAGGGCGA+TGG | 0.453025 | 2_4:+3434965 | Msa0308990:CDS |
TCTCTTTCCTGGCGGAGACT+GGG | 0.457663 | 2_4:-3431818 | None:intergenic |
AGGCTGCTCTTGTTGCGAGC+AGG | 0.461210 | 2_4:+3434883 | Msa0308990:intron |
AATTTGAGCAACATACTGTC+TGG | 0.464852 | 2_4:-3431931 | None:intergenic |
AGTACTGAGCCAACCATCAT+TGG | 0.465847 | 2_4:+3435125 | Msa0308990:CDS |
AGGAAGCAGTGCAGAGGAAG+TGG | 0.466330 | 2_4:+3435095 | Msa0308990:CDS |
GAGGGCGATGGGGCAGTTCA+CGG | 0.466433 | 2_4:+3434977 | Msa0308990:CDS |
TACACTCCAGCTTTCCAACT+TGG | 0.467279 | 2_4:+3432060 | Msa0308990:intron |
AAGCCTCTGAGAGTTGCAAC+TGG | 0.474293 | 2_4:+3433414 | Msa0308990:CDS |
CTGAGCCAACCATCATTGGC+TGG | 0.475399 | 2_4:+3435129 | Msa0308990:CDS |
CTGCATTGATAGTATCTTTG+GGG | 0.479892 | 2_4:-3435944 | None:intergenic |
AATACTTGGTTAGATAAGTA+GGG | 0.485402 | 2_4:+3436096 | Msa0308990:three_prime_UTR |
ATGTAGTTCCACTACTTACA+AGG | 0.491288 | 2_4:-3434680 | None:intergenic |
AGTCATATGTGTGCCAAAGA+AGG | 0.500447 | 2_4:+3435408 | Msa0308990:CDS |
AAATCGATGATTGGACGAAA+AGG | 0.502489 | 2_4:+3434906 | Msa0308990:CDS |
CTGAAACCATACTTCCAAGT+TGG | 0.505934 | 2_4:-3432074 | None:intergenic |
GAAGACATCCGACCTTTGCT+TGG | 0.507615 | 2_4:-3431855 | None:intergenic |
TTGTTTGATTAACTAATGCT+GGG | 0.508108 | 2_4:-3436289 | None:intergenic |
GATACCAAGGTCAAGATCTC+CGG | 0.510734 | 2_4:-3432128 | None:intergenic |
TTCGACTGCTGATGGAGCAC+TGG | 0.513957 | 2_4:+3433599 | Msa0308990:CDS |
AAGATAAAAGGAGAGAAAGA+GGG | 0.519350 | 2_4:+3431525 | Msa0308990:five_prime_UTR |
ACTATAGTCCAAGTTTAGAA+AGG | 0.521278 | 2_4:-3435878 | None:intergenic |
GTCCAAGTTTAGAAAGGAGC+TGG | 0.532328 | 2_4:-3435872 | None:intergenic |
TTAGTTAATCAAACAAGTGA+AGG | 0.533555 | 2_4:+3436296 | Msa0308990:three_prime_UTR |
ATGGAAACCCAGTCTCCGCC+AGG | 0.536174 | 2_4:+3431811 | Msa0308990:CDS |
GCGAGCAGGAAATCGATGAT+TGG | 0.536182 | 2_4:+3434897 | Msa0308990:CDS |
GTATGTTGCTCAAATTCCTC+AGG | 0.536649 | 2_4:+3431938 | Msa0308990:CDS |
GAAAGGAGCTGGCGCCATCT+GGG | 0.539669 | 2_4:-3435861 | None:intergenic |
GCCAGGAAAGAGATCCGTCT+TGG | 0.542357 | 2_4:+3431828 | Msa0308990:CDS |
ACCTGCAACCCAGCCAATGA+TGG | 0.542827 | 2_4:-3435138 | None:intergenic |
CTTGAGAAGGTCGAGTGTAT+CGG | 0.543647 | 2_4:-3431877 | None:intergenic |
TTATCCGGAGATCTTGACCT+TGG | 0.545845 | 2_4:+3432124 | Msa0308990:CDS |
AATAACTTGAAGGAAATTGA+AGG | 0.546732 | 2_4:+3434711 | Msa0308990:CDS |
CGTCTTGGTTTGCCAAGCAA+AGG | 0.547016 | 2_4:+3431843 | Msa0308990:CDS |
TGAGATGCTTGAAAGATTGG+AGG | 0.547977 | 2_4:+3434947 | Msa0308990:CDS |
CCTACAAGCCGATGCAGAAG+TGG | 0.550151 | 2_4:-3436024 | None:intergenic |
TATACTCACTGAATTTGGCC+AGG | 0.550883 | 2_4:+3432162 | Msa0308990:CDS |
ATTTGAGCAACATACTGTCT+GGG | 0.552782 | 2_4:-3431930 | None:intergenic |
ATCTTGGACCTTGTAAGTAG+TGG | 0.552901 | 2_4:+3434672 | Msa0308990:CDS |
AGCACTGGAGGCAGCTCCTG+CGG | 0.560029 | 2_4:+3433614 | Msa0308990:CDS |
TTGAGTTTCATAAATTGAAG+AGG | 0.563607 | 2_4:-3431778 | None:intergenic |
AGTTTCATAAATTGAAGAGG+AGG | 0.570962 | 2_4:-3431775 | None:intergenic |
CGATACACTCGACCTTCTCA+AGG | 0.571951 | 2_4:+3431878 | Msa0308990:CDS |
GACTGCTGATGGAGCACTGG+AGG | 0.576762 | 2_4:+3433602 | Msa0308990:CDS |
AGATATTCCCACTTCTGCAT+CGG | 0.578518 | 2_4:+3436016 | Msa0308990:three_prime_UTR |
TTTCTGCAAGCGTGATGGAA+AGG | 0.581353 | 2_4:+3435363 | Msa0308990:CDS |
TTCCACCTACCTCAATGAGC+TGG | 0.583516 | 2_4:+3436211 | Msa0308990:three_prime_UTR |
TGAAAATGTAAATTCACTAG+AGG | 0.584392 | 2_4:+3433359 | Msa0308990:CDS |
ATAAATTGAAGAGGAGGAGG+AGG | 0.585140 | 2_4:-3431769 | None:intergenic |
GATCTTGACCTTGGTATCGT+AGG | 0.585932 | 2_4:+3432133 | Msa0308990:CDS |
GTTCATATGATGCAGATTGG+AGG | 0.586050 | 2_4:+3435789 | Msa0308990:intron |
CGATCTTATCATTGTGCACG+AGG | 0.586126 | 2_4:+3433198 | Msa0308990:CDS |
AAAGATTGGAGGCACATCTG+AGG | 0.586441 | 2_4:+3434958 | Msa0308990:CDS |
AAGATTGGAGGCACATCTGA+GGG | 0.587964 | 2_4:+3434959 | Msa0308990:CDS |
AGAAGAAAGAAACAGAAAGA+GGG | 0.589280 | 2_4:+3431569 | Msa0308990:five_prime_UTR |
TGAGCCAACCATCATTGGCT+GGG | 0.591014 | 2_4:+3435130 | Msa0308990:CDS |
GAAATTAGAAATTTGCGGGA+TGG | 0.591843 | 2_4:+3436266 | Msa0308990:three_prime_UTR |
TGCATTGATAGTATCTTTGG+GGG | 0.595193 | 2_4:-3435943 | None:intergenic |
ACTTGGAAGTATGGTTTCAG+AGG | 0.598140 | 2_4:+3432077 | Msa0308990:CDS |
CATGTGAAATTAGAAATTTG+CGG | 0.601685 | 2_4:+3436261 | Msa0308990:three_prime_UTR |
GCAACCCAGCCAATGATGGT+TGG | 0.605047 | 2_4:-3435134 | None:intergenic |
ATGATGCAGATTGGAGGCAG+CGG | 0.611608 | 2_4:+3435795 | Msa0308990:intron |
TTGGTTTGCCAAGCAAAGGT+CGG | 0.612452 | 2_4:+3431847 | Msa0308990:CDS |
GCAGAAAACGGGACTTACAG+TGG | 0.618700 | 2_4:-3435347 | None:intergenic |
GATGACCAGCTCATTGAGGT+AGG | 0.621980 | 2_4:-3436216 | None:intergenic |
CTTTGCTTGGCAAACCAAGA+CGG | 0.625476 | 2_4:-3431842 | None:intergenic |
AATCCAGTTGCAACTCTCAG+AGG | 0.625497 | 2_4:-3433417 | None:intergenic |
TATGAGAGGAAGCAGTGCAG+AGG | 0.626577 | 2_4:+3435089 | Msa0308990:CDS |
AGATAATGGCATTAAGCATG+TGG | 0.627844 | 2_4:+3433572 | Msa0308990:CDS |
TTGATGAGGAAACTCCCAGA+TGG | 0.630461 | 2_4:+3435847 | Msa0308990:CDS |
AGGCACATCTGAGGGCGATG+GGG | 0.631283 | 2_4:+3434967 | Msa0308990:CDS |
GACCAGCTCATTGAGGTAGG+TGG | 0.635644 | 2_4:-3436213 | None:intergenic |
TAGTTAATCAAACAAGTGAA+GGG | 0.635773 | 2_4:+3436297 | Msa0308990:three_prime_UTR |
GTCTATACAGCAATTGAGAG+CGG | 0.638210 | 2_4:+3435441 | Msa0308990:CDS |
CAGGTCACTGCAAATATGAG+AGG | 0.643908 | 2_4:+3435075 | Msa0308990:intron |
CTACAAGCCGATGCAGAAGT+GGG | 0.646815 | 2_4:-3436023 | None:intergenic |
ATAAGATGACCAGCTCATTG+AGG | 0.648580 | 2_4:-3436220 | None:intergenic |
AACTTGAAGGAAATTGAAGG+TGG | 0.649831 | 2_4:+3434714 | Msa0308990:CDS |
TGATTGTCGTTTATCCATTG+CGG | 0.655142 | 2_4:+3433234 | Msa0308990:CDS |
ATACTTGGTTAGATAAGTAG+GGG | 0.656405 | 2_4:+3436097 | Msa0308990:three_prime_UTR |
CAGAAAACGGGACTTACAGT+GGG | 0.660083 | 2_4:-3435346 | None:intergenic |
ACAATTGACAGTCCTTGAGA+AGG | 0.663029 | 2_4:-3431890 | None:intergenic |
TATCAAGTCCTACGATACCA+AGG | 0.676300 | 2_4:-3432141 | None:intergenic |
TACTTGGTTAGATAAGTAGG+GGG | 0.701332 | 2_4:+3436098 | Msa0308990:three_prime_UTR |
AAGACGGATCTCTTTCCTGG+CGG | 0.740099 | 2_4:-3431826 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGTTAATTATACTAAATAT+AGG | - | chr2_4:3432787-3432806 | None:intergenic | 10.0% |
!! | AAACCAAATAATAAGATAAA+AGG | + | chr2_4:3431513-3431532 | Msa0308990:five_prime_UTR | 15.0% |
!!! | GTTTAACTTTTAAATTTTGT+TGG | - | chr2_4:3432756-3432775 | None:intergenic | 15.0% |
!! | TTAGTATAATTAACATGAAT+TGG | + | chr2_4:3432791-3432810 | Msa0308990:intron | 15.0% |
!!! | TTTAAAATCTGAAAACATAA+AGG | - | chr2_4:3433673-3433692 | None:intergenic | 15.0% |
!! | CAAAATTTATCAAAAACTAT+AGG | - | chr2_4:3433780-3433799 | None:intergenic | 15.0% |
!! | ATTGTTTAAGTAAAACAATT+AGG | + | chr2_4:3434216-3434235 | Msa0308990:intron | 15.0% |
!! | TTGATCTAATTATAAATTTC+TGG | + | chr2_4:3434258-3434277 | Msa0308990:intron | 15.0% |
!!! | TCTCCTTTTATCTTATTATT+TGG | - | chr2_4:3431519-3431538 | None:intergenic | 20.0% |
!! | AAAAATGACATGTGATAAAT+GGG | - | chr2_4:3431621-3431640 | None:intergenic | 20.0% |
!!! | AATTTTCTTACAATGTCTTT+GGG | - | chr2_4:3432103-3432122 | None:intergenic | 20.0% |
!! | ATTGTAAGAAAATTGTTATC+CGG | + | chr2_4:3432109-3432128 | Msa0308990:CDS | 20.0% |
!! | AAATCATACAAAATTACTGT+TGG | + | chr2_4:3432306-3432325 | Msa0308990:intron | 20.0% |
!! | CATTTCTTTCAAATAAATGT+TGG | - | chr2_4:3432522-3432541 | None:intergenic | 20.0% |
!!! | TTTTTTCTTTCTTTTTCTGT+AGG | + | chr2_4:3432616-3432635 | Msa0308990:intron | 20.0% |
!! | ATAAAAAAAGTTAAGCTTAC+GGG | - | chr2_4:3433151-3433170 | None:intergenic | 20.0% |
!! | CATAAAAAAAGTTAAGCTTA+CGG | - | chr2_4:3433152-3433171 | None:intergenic | 20.0% |
!! | CCATTATCTTTCATAAATTT+AGG | - | chr2_4:3433561-3433580 | None:intergenic | 20.0% |
!! | CCTAAATTTATGAAAGATAA+TGG | + | chr2_4:3433558-3433577 | Msa0308990:CDS | 20.0% |
!!! | AGATTATTTTCACATTTCAT+AGG | + | chr2_4:3433898-3433917 | Msa0308990:intron | 20.0% |
!!! | TCAAATAAGAAAGTATAGAT+TGG | - | chr2_4:3434139-3434158 | None:intergenic | 20.0% |
!!! | TCTATACTTTCTTATTTGAA+AGG | + | chr2_4:3434140-3434159 | Msa0308990:intron | 20.0% |
!!! | CTATACTTTCTTATTTGAAA+GGG | + | chr2_4:3434141-3434160 | Msa0308990:intron | 20.0% |
!!! | GAAATATTTTATATGGAAAG+AGG | - | chr2_4:3434473-3434492 | None:intergenic | 20.0% |
!!! | TAACAGGGAAATATTTTATA+TGG | - | chr2_4:3434480-3434499 | None:intergenic | 20.0% |
!! | AAAATGAATCAAAAAAGATC+AGG | - | chr2_4:3434606-3434625 | None:intergenic | 20.0% |
!! | ATTGAAAGAAAATAACTTGA+AGG | + | chr2_4:3434701-3434720 | Msa0308990:CDS | 20.0% |
!! | AATCTACAATTAGAAGAAAA+CGG | - | chr2_4:3435052-3435071 | None:intergenic | 20.0% |
!!! | TTTTCTTCTAATTGTAGATT+CGG | + | chr2_4:3435052-3435071 | Msa0308990:intron | 20.0% |
!!! | TATTTTTCTTGTTCTTAAGT+TGG | - | chr2_4:3435545-3435564 | None:intergenic | 20.0% |
!! | ACAAGAAAAATAGAAAAGTA+AGG | + | chr2_4:3435553-3435572 | Msa0308990:intron | 20.0% |
!! | TTATATATGTGTTCCATTTA+TGG | + | chr2_4:3435900-3435919 | Msa0308990:three_prime_UTR | 20.0% |
! | GAAAAATGACATGTGATAAA+TGG | - | chr2_4:3431622-3431641 | None:intergenic | 25.0% |
! | CATTCAGATAGTAGTAATAT+TGG | + | chr2_4:3431665-3431684 | Msa0308990:CDS | 25.0% |
! | TTGAGTTTCATAAATTGAAG+AGG | - | chr2_4:3431781-3431800 | None:intergenic | 25.0% |
!! | CAATTTTCTTACAATGTCTT+TGG | - | chr2_4:3432104-3432123 | None:intergenic | 25.0% |
!! | TGTAATTTGTCACTAAGATA+GGG | - | chr2_4:3432447-3432466 | None:intergenic | 25.0% |
! | TTCTTTCAAATAAATGTTGG+AGG | - | chr2_4:3432519-3432538 | None:intergenic | 25.0% |
!!! | AAGTTGGTATAACGTTTAAT+AGG | - | chr2_4:3432708-3432727 | None:intergenic | 25.0% |
! | TATTAAACGTTATACCAACT+TGG | + | chr2_4:3432707-3432726 | Msa0308990:intron | 25.0% |
!! | ATCTTGAAGCATTTCTAATT+AGG | - | chr2_4:3432930-3432949 | None:intergenic | 25.0% |
! | TGCATGTGTTAAAATTTAAC+AGG | + | chr2_4:3433003-3433022 | Msa0308990:intron | 25.0% |
! | TATGTTTATCATTCTTTGTC+AGG | + | chr2_4:3433168-3433187 | Msa0308990:intron | 25.0% |
! | ATGTTTATCATTCTTTGTCA+GGG | + | chr2_4:3433169-3433188 | Msa0308990:intron | 25.0% |
! | CAAAAAACAATGATACTGAT+AGG | - | chr2_4:3433286-3433305 | None:intergenic | 25.0% |
!! | TTTTCAAATATTCCATACTG+AGG | - | chr2_4:3433345-3433364 | None:intergenic | 25.0% |
! | TGAAAATGTAAATTCACTAG+AGG | + | chr2_4:3433359-3433378 | Msa0308990:CDS | 25.0% |
! | TTAGTTGAATGTGAATACAT+AGG | - | chr2_4:3433445-3433464 | None:intergenic | 25.0% |
!! | TGTTTACCTTTTAAATGAGA+AGG | + | chr2_4:3433499-3433518 | Msa0308990:intron | 25.0% |
! | TTGAATCAAATGATAGCTAT+TGG | + | chr2_4:3433734-3433753 | Msa0308990:intron | 25.0% |
! | TGAATCAAATGATAGCTATT+GGG | + | chr2_4:3433735-3433754 | Msa0308990:intron | 25.0% |
! | ATAGCTTAATACACTAATCA+TGG | + | chr2_4:3433810-3433829 | Msa0308990:intron | 25.0% |
!! | AATGGTTATCCTTGATTTTT+GGG | - | chr2_4:3433854-3433873 | None:intergenic | 25.0% |
! | TAGGATGAAAAACTGTAAAA+CGG | + | chr2_4:3433917-3433936 | Msa0308990:intron | 25.0% |
! | TAGTCAATATTCTGTATTCA+AGG | + | chr2_4:3433989-3434008 | Msa0308990:intron | 25.0% |
!!! | AAATTTCTGGTTCATTTGAA+AGG | + | chr2_4:3434271-3434290 | Msa0308990:intron | 25.0% |
! | AATAACTTGAAGGAAATTGA+AGG | + | chr2_4:3434711-3434730 | Msa0308990:CDS | 25.0% |
! | GCAAAAAGAAAATACAGAAA+AGG | - | chr2_4:3435220-3435239 | None:intergenic | 25.0% |
!!! | AGTTTGAGTTTTCTATCAAA+AGG | + | chr2_4:3435494-3435513 | Msa0308990:intron | 25.0% |
!!! | GTTTGAGTTTTCTATCAAAA+GGG | + | chr2_4:3435495-3435514 | Msa0308990:intron | 25.0% |
!!! | TTTGAGTTTTCTATCAAAAG+GGG | + | chr2_4:3435496-3435515 | Msa0308990:intron | 25.0% |
! | AATAGAAAAGTAAGGTTGAA+TGG | + | chr2_4:3435561-3435580 | Msa0308990:intron | 25.0% |
! | ATAGAAAAGTAAGGTTGAAT+GGG | + | chr2_4:3435562-3435581 | Msa0308990:intron | 25.0% |
! | TCATCAAAAATATAGGTCAA+GGG | - | chr2_4:3435834-3435853 | None:intergenic | 25.0% |
! | AGTTTCCTCATCAAAAATAT+AGG | - | chr2_4:3435841-3435860 | None:intergenic | 25.0% |
! | TTAATTCTGTCCATAATACT+TGG | + | chr2_4:3436082-3436101 | Msa0308990:three_prime_UTR | 25.0% |
! | ACTTATCTAACCAAGTATTA+TGG | - | chr2_4:3436095-3436114 | None:intergenic | 25.0% |
! | TAATACTTGGTTAGATAAGT+AGG | + | chr2_4:3436095-3436114 | Msa0308990:three_prime_UTR | 25.0% |
! | AATACTTGGTTAGATAAGTA+GGG | + | chr2_4:3436096-3436115 | Msa0308990:three_prime_UTR | 25.0% |
!! | TTTAACTTCAACATTGTTGT+TGG | + | chr2_4:3436135-3436154 | Msa0308990:three_prime_UTR | 25.0% |
! | CATGTGAAATTAGAAATTTG+CGG | + | chr2_4:3436261-3436280 | Msa0308990:three_prime_UTR | 25.0% |
! | ATGTGAAATTAGAAATTTGC+GGG | + | chr2_4:3436262-3436281 | Msa0308990:three_prime_UTR | 25.0% |
! | TTGTTTGATTAACTAATGCT+GGG | - | chr2_4:3436292-3436311 | None:intergenic | 25.0% |
! | TTAGTTAATCAAACAAGTGA+AGG | + | chr2_4:3436296-3436315 | Msa0308990:three_prime_UTR | 25.0% |
! | TAGTTAATCAAACAAGTGAA+GGG | + | chr2_4:3436297-3436316 | Msa0308990:three_prime_UTR | 25.0% |
TAAGATAAAAGGAGAGAAAG+AGG | + | chr2_4:3431524-3431543 | Msa0308990:five_prime_UTR | 30.0% | |
AAGATAAAAGGAGAGAAAGA+GGG | + | chr2_4:3431525-3431544 | Msa0308990:five_prime_UTR | 30.0% | |
AGAAGAAAGAAACAGAAAGA+GGG | + | chr2_4:3431569-3431588 | Msa0308990:five_prime_UTR | 30.0% | |
AGTTTCATAAATTGAAGAGG+AGG | - | chr2_4:3431778-3431797 | None:intergenic | 30.0% | |
CTTGATATACTCACTGAATT+TGG | + | chr2_4:3432157-3432176 | Msa0308990:CDS | 30.0% | |
TCAGTCACATTAATTGAGAA+GGG | - | chr2_4:3432252-3432271 | None:intergenic | 30.0% | |
! | TAATTTGTCACTAAGATAGG+GGG | - | chr2_4:3432445-3432464 | None:intergenic | 30.0% |
! | GTAATTTGTCACTAAGATAG+GGG | - | chr2_4:3432446-3432465 | None:intergenic | 30.0% |
! | CTGTAATTTGTCACTAAGAT+AGG | - | chr2_4:3432448-3432467 | None:intergenic | 30.0% |
CTATCTTAGTGACAAATTAC+AGG | + | chr2_4:3432446-3432465 | Msa0308990:intron | 30.0% | |
! | TTTTCAACATCCACAACTTT+TGG | + | chr2_4:3432477-3432496 | Msa0308990:intron | 30.0% |
AATTCCAAAACCAAAAGTTG+TGG | - | chr2_4:3432490-3432509 | None:intergenic | 30.0% | |
TTTCAAATAAATGTTGGAGG+TGG | - | chr2_4:3432516-3432535 | None:intergenic | 30.0% | |
ATCTGTTATCATCAATCTAG+GGG | - | chr2_4:3432587-3432606 | None:intergenic | 30.0% | |
CATCTGTTATCATCAATCTA+GGG | - | chr2_4:3432588-3432607 | None:intergenic | 30.0% | |
TCATCTGTTATCATCAATCT+AGG | - | chr2_4:3432589-3432608 | None:intergenic | 30.0% | |
! | TTTCTTTTTCTGTAGGAAGT+AGG | + | chr2_4:3432623-3432642 | Msa0308990:intron | 30.0% |
!!! | TGCAGTTAGTTTTATTCCTT+AGG | - | chr2_4:3432671-3432690 | None:intergenic | 30.0% |
AAAAGTAGATATGTCGATCA+GGG | - | chr2_4:3433045-3433064 | None:intergenic | 30.0% | |
CAGGAAAATTGTGGATATAA+TGG | - | chr2_4:3433111-3433130 | None:intergenic | 30.0% | |
AAACAAATGTGGTTGCTTAA+GGG | - | chr2_4:3433316-3433335 | None:intergenic | 30.0% | |
ATCAGACCTTCTCATTTAAA+AGG | - | chr2_4:3433508-3433527 | None:intergenic | 30.0% | |
GAATCAAATGATAGCTATTG+GGG | + | chr2_4:3433736-3433755 | Msa0308990:intron | 30.0% | |
! | GAATGGTTATCCTTGATTTT+TGG | - | chr2_4:3433855-3433874 | None:intergenic | 30.0% |
ACCATTCTGTTAATGTTTAG+TGG | + | chr2_4:3433868-3433887 | Msa0308990:intron | 30.0% | |
! | CTATCTGGTTGATTAATTTG+TGG | + | chr2_4:3433950-3433969 | Msa0308990:intron | 30.0% |
TGAACTTTAATAAATGCTGC+TGG | - | chr2_4:3434183-3434202 | None:intergenic | 30.0% | |
ATCAAACTTCCAAATCAATG+GGG | - | chr2_4:3434243-3434262 | None:intergenic | 30.0% | |
GATCAAACTTCCAAATCAAT+GGG | - | chr2_4:3434244-3434263 | None:intergenic | 30.0% | |
AGATCAAACTTCCAAATCAA+TGG | - | chr2_4:3434245-3434264 | None:intergenic | 30.0% | |
!! | TTATCGTTTTCTCCGTTTTT+TGG | + | chr2_4:3434497-3434516 | Msa0308990:intron | 30.0% |
CATGTACAAAGACCAAAAAA+CGG | - | chr2_4:3434512-3434531 | None:intergenic | 30.0% | |
AAAAGATCAGGTCAAGTATA+TGG | - | chr2_4:3434594-3434613 | None:intergenic | 30.0% | |
TTGTCTTTGCTCTAATTAGA+TGG | + | chr2_4:3434635-3434654 | Msa0308990:intron | 30.0% | |
TGTCTTTGCTCTAATTAGAT+GGG | + | chr2_4:3434636-3434655 | Msa0308990:intron | 30.0% | |
! | AATTTTCACGATTTGTAACC+TGG | - | chr2_4:3434755-3434774 | None:intergenic | 30.0% |
ACAATAGATCGCAATAGTTA+AGG | - | chr2_4:3434783-3434802 | None:intergenic | 30.0% | |
ACAAAAAGAAACTGGAGTTT+GGG | - | chr2_4:3435028-3435047 | None:intergenic | 30.0% | |
AACAAAAAGAAACTGGAGTT+TGG | - | chr2_4:3435029-3435048 | None:intergenic | 30.0% | |
AAAACGGAACAAAAAGAAAC+TGG | - | chr2_4:3435036-3435055 | None:intergenic | 30.0% | |
! | CTTTTTGCACTAGTGAAATA+TGG | + | chr2_4:3435232-3435251 | Msa0308990:intron | 30.0% |
!! | CTAATTTTAAGTGTCATCCT+CGG | + | chr2_4:3435306-3435325 | Msa0308990:intron | 30.0% |
TATCAAAAGGGGAATATTGT+TGG | + | chr2_4:3435507-3435526 | Msa0308990:intron | 30.0% | |
ATCAAAAGGGGAATATTGTT+GGG | + | chr2_4:3435508-3435527 | Msa0308990:intron | 30.0% | |
! | AAAGATAAGCAGAAGTTTTG+AGG | - | chr2_4:3435657-3435676 | None:intergenic | 30.0% |
CTCATCAAAAATATAGGTCA+AGG | - | chr2_4:3435835-3435854 | None:intergenic | 30.0% | |
!! | CTTGACCTATATTTTTGATG+AGG | + | chr2_4:3435833-3435852 | Msa0308990:CDS | 30.0% |
ACTATAGTCCAAGTTTAGAA+AGG | - | chr2_4:3435881-3435900 | None:intergenic | 30.0% | |
ACAACAAACTACTCCATAAA+TGG | - | chr2_4:3435916-3435935 | None:intergenic | 30.0% | |
! | TCTGCATTGATAGTATCTTT+GGG | - | chr2_4:3435948-3435967 | None:intergenic | 30.0% |
! | TTCTGCATTGATAGTATCTT+TGG | - | chr2_4:3435949-3435968 | None:intergenic | 30.0% |
ATACTTGGTTAGATAAGTAG+GGG | + | chr2_4:3436097-3436116 | Msa0308990:three_prime_UTR | 30.0% | |
! | TTGTTGTTGGAGTTATACTA+TGG | + | chr2_4:3436148-3436167 | Msa0308990:three_prime_UTR | 30.0% |
CTTGTTTGATTAACTAATGC+TGG | - | chr2_4:3436293-3436312 | None:intergenic | 30.0% | |
CAGAAGAAAGAAACAGAAAG+AGG | + | chr2_4:3431568-3431587 | Msa0308990:five_prime_UTR | 35.0% | |
TTCATAAATTGAAGAGGAGG+AGG | - | chr2_4:3431775-3431794 | None:intergenic | 35.0% | |
GAAACTCAAGTACTCCTTAA+TGG | + | chr2_4:3431792-3431811 | Msa0308990:CDS | 35.0% | |
ATTTGAGCAACATACTGTCT+GGG | - | chr2_4:3431933-3431952 | None:intergenic | 35.0% | |
AATTTGAGCAACATACTGTC+TGG | - | chr2_4:3431934-3431953 | None:intergenic | 35.0% | |
TGATTTAGAAGAGAAGCAGT+AGG | - | chr2_4:3432013-3432032 | None:intergenic | 35.0% | |
CATTAATTGAGAAGGGTAGT+TGG | - | chr2_4:3432245-3432264 | None:intergenic | 35.0% | |
GTCAGTCACATTAATTGAGA+AGG | - | chr2_4:3432253-3432272 | None:intergenic | 35.0% | |
CACATGTAGTAAGTACGTAA+CGG | - | chr2_4:3432284-3432303 | None:intergenic | 35.0% | |
TACACTTGTGTTCAGAATGA+GGG | - | chr2_4:3432362-3432381 | None:intergenic | 35.0% | |
TTACACTTGTGTTCAGAATG+AGG | - | chr2_4:3432363-3432382 | None:intergenic | 35.0% | |
TGTAATAGCCCTTCATTGTT+TGG | + | chr2_4:3432378-3432397 | Msa0308990:intron | 35.0% | |
GTAATAGCCCTTCATTGTTT+GGG | + | chr2_4:3432379-3432398 | Msa0308990:intron | 35.0% | |
GAGAATTCCCAAACAATGAA+GGG | - | chr2_4:3432389-3432408 | None:intergenic | 35.0% | |
TGAGAATTCCCAAACAATGA+AGG | - | chr2_4:3432390-3432409 | None:intergenic | 35.0% | |
ATTGTTTGGGAATTCTCACT+TGG | + | chr2_4:3432392-3432411 | Msa0308990:intron | 35.0% | |
AATTTGTCACTAAGATAGGG+GGG | - | chr2_4:3432444-3432463 | None:intergenic | 35.0% | |
!!! | ACATCCACAACTTTTGGTTT+TGG | + | chr2_4:3432483-3432502 | Msa0308990:intron | 35.0% |
ATATTCTAGATCTGCACCTA+AGG | + | chr2_4:3432652-3432671 | Msa0308990:intron | 35.0% | |
! | AGATATTTTACATGAAGCCC+GGG | - | chr2_4:3432982-3433001 | None:intergenic | 35.0% |
! | GAGATATTTTACATGAAGCC+CGG | - | chr2_4:3432983-3433002 | None:intergenic | 35.0% |
CAAAAGTAGATATGTCGATC+AGG | - | chr2_4:3433046-3433065 | None:intergenic | 35.0% | |
! | ATATCCACAATTTTCCTGCT+TGG | + | chr2_4:3433113-3433132 | Msa0308990:intron | 35.0% |
TTAAGCTTACGGGAAAAGTA+AGG | - | chr2_4:3433141-3433160 | None:intergenic | 35.0% | |
! | TGATTGTCGTTTATCCATTG+CGG | + | chr2_4:3433234-3433253 | Msa0308990:CDS | 35.0% |
!!! | CTAATTTTAACTCACCGCAA+TGG | - | chr2_4:3433251-3433270 | None:intergenic | 35.0% |
GAAACAAATGTGGTTGCTTA+AGG | - | chr2_4:3433317-3433336 | None:intergenic | 35.0% | |
! | TGAGGAATCTGAAACAAATG+TGG | - | chr2_4:3433327-3433346 | None:intergenic | 35.0% |
TTGTTTCAGATTCCTCAGTA+TGG | + | chr2_4:3433330-3433349 | Msa0308990:intron | 35.0% | |
! | AGATAATGGCATTAAGCATG+TGG | + | chr2_4:3433572-3433591 | Msa0308990:CDS | 35.0% |
AAATGATAGCTATTGGGGTT+TGG | + | chr2_4:3433741-3433760 | Msa0308990:intron | 35.0% | |
TCATGTGATCCCAAAAATCA+AGG | + | chr2_4:3433842-3433861 | Msa0308990:intron | 35.0% | |
GCCACTAAACATTAACAGAA+TGG | - | chr2_4:3433872-3433891 | None:intergenic | 35.0% | |
AACGGAAGATGAATTCTATC+TGG | + | chr2_4:3433935-3433954 | Msa0308990:intron | 35.0% | |
!! | TTTCTGGTTCATTTGAAAGG+AGG | + | chr2_4:3434274-3434293 | Msa0308990:intron | 35.0% |
AAACGGAGAAAACGATAACA+GGG | - | chr2_4:3434495-3434514 | None:intergenic | 35.0% | |
AAAACGGAGAAAACGATAAC+AGG | - | chr2_4:3434496-3434515 | None:intergenic | 35.0% | |
ATGTAGTTCCACTACTTACA+AGG | - | chr2_4:3434683-3434702 | None:intergenic | 35.0% | |
AACTTGAAGGAAATTGAAGG+TGG | + | chr2_4:3434714-3434733 | Msa0308990:CDS | 35.0% | |
! | AATTGAAGGTGGAACTGTTT+TGG | + | chr2_4:3434725-3434744 | Msa0308990:CDS | 35.0% |
TAGATCGCAATAGTTAAGGT+CGG | - | chr2_4:3434779-3434798 | None:intergenic | 35.0% | |
!! | TTCTTATGGCTTGTTGTATC+TGG | + | chr2_4:3434833-3434852 | Msa0308990:intron | 35.0% |
! | CTGACAATTGAACACTTTTC+AGG | + | chr2_4:3434863-3434882 | Msa0308990:intron | 35.0% |
AAATCGATGATTGGACGAAA+AGG | + | chr2_4:3434906-3434925 | Msa0308990:CDS | 35.0% | |
TCATGAGATGCTTGAAAGAT+TGG | + | chr2_4:3434944-3434963 | Msa0308990:CDS | 35.0% | |
ATCCTCCCCTAAAATGAATA+GGG | - | chr2_4:3435192-3435211 | None:intergenic | 35.0% | |
CGAGGATGACACTTAAAATT+AGG | - | chr2_4:3435308-3435327 | None:intergenic | 35.0% | |
GAATATTGTTGGGAGTTTGT+GGG | + | chr2_4:3435518-3435537 | Msa0308990:intron | 35.0% | |
AATATTGTTGGGAGTTTGTG+GGG | + | chr2_4:3435519-3435538 | Msa0308990:intron | 35.0% | |
AAACTTCTGCTTATCTTTCG+TGG | + | chr2_4:3435659-3435678 | Msa0308990:intron | 35.0% | |
ATCATATGAACGTAGTCAAC+AGG | - | chr2_4:3435780-3435799 | None:intergenic | 35.0% | |
TACGTTCATATGATGCAGAT+TGG | + | chr2_4:3435786-3435805 | Msa0308990:intron | 35.0% | |
! | TGCATTGATAGTATCTTTGG+GGG | - | chr2_4:3435946-3435965 | None:intergenic | 35.0% |
! | CTGCATTGATAGTATCTTTG+GGG | - | chr2_4:3435947-3435966 | None:intergenic | 35.0% |
AACGAAATTGCATTTCTTGC+TGG | + | chr2_4:3435986-3436005 | Msa0308990:three_prime_UTR | 35.0% | |
TACTTGGTTAGATAAGTAGG+GGG | + | chr2_4:3436098-3436117 | Msa0308990:three_prime_UTR | 35.0% | |
GAAATTAGAAATTTGCGGGA+TGG | + | chr2_4:3436266-3436285 | Msa0308990:three_prime_UTR | 35.0% | |
! | ACGATGATGATGAGCCAAAT+TGG | + | chr2_4:3431708-3431727 | Msa0308990:CDS | 40.0% |
GAACAGGAGTGAAACCAATT+TGG | - | chr2_4:3431725-3431744 | None:intergenic | 40.0% | |
! | CAATTTACTGCTTGCTGAAC+AGG | - | chr2_4:3431741-3431760 | None:intergenic | 40.0% |
ATAAATTGAAGAGGAGGAGG+AGG | - | chr2_4:3431772-3431791 | None:intergenic | 40.0% | |
ACAATTGACAGTCCTTGAGA+AGG | - | chr2_4:3431893-3431912 | None:intergenic | 40.0% | |
GTATGTTGCTCAAATTCCTC+AGG | + | chr2_4:3431938-3431957 | Msa0308990:CDS | 40.0% | |
! | ATACTTCCAAGTTGGAAAGC+TGG | - | chr2_4:3432069-3432088 | None:intergenic | 40.0% |
AGCTTTCCAACTTGGAAGTA+TGG | + | chr2_4:3432068-3432087 | Msa0308990:intron | 40.0% | |
CTGAAACCATACTTCCAAGT+TGG | - | chr2_4:3432077-3432096 | None:intergenic | 40.0% | |
! | ACTTGGAAGTATGGTTTCAG+AGG | + | chr2_4:3432077-3432096 | Msa0308990:CDS | 40.0% |
TATCAAGTCCTACGATACCA+AGG | - | chr2_4:3432144-3432163 | None:intergenic | 40.0% | |
TATACTCACTGAATTTGGCC+AGG | + | chr2_4:3432162-3432181 | Msa0308990:CDS | 40.0% | |
CGTTACGTACTTACTACATG+TGG | + | chr2_4:3432282-3432301 | Msa0308990:intron | 40.0% | |
TGTGTTCAGAATGAGGGAAT+GGG | - | chr2_4:3432356-3432375 | None:intergenic | 40.0% | |
TTGTGTTCAGAATGAGGGAA+TGG | - | chr2_4:3432357-3432376 | None:intergenic | 40.0% | |
! | GGTATAGTGTCTGAGATGTT+GGG | - | chr2_4:3432422-3432441 | None:intergenic | 40.0% |
ATTTGTCACTAAGATAGGGG+GGG | - | chr2_4:3432443-3432462 | None:intergenic | 40.0% | |
GCTAGAAACCACCTCTAAAT+TGG | + | chr2_4:3432557-3432576 | Msa0308990:intron | 40.0% | |
TAGTCAACACTTATCAGCCT+CGG | - | chr2_4:3432836-3432855 | None:intergenic | 40.0% | |
TCTTTAACTCGTCAGAACTG+TGG | - | chr2_4:3432887-3432906 | None:intergenic | 40.0% | |
AGCTTGCAAAAATGCCTCAA+TGG | + | chr2_4:3433382-3433401 | Msa0308990:CDS | 40.0% | |
! | GGCTTTTCTTTTGTCCATTG+AGG | - | chr2_4:3433399-3433418 | None:intergenic | 40.0% |
TTTCCTTCTTACTGTTCAGC+TGG | + | chr2_4:3433533-3433552 | Msa0308990:intron | 40.0% | |
TTCCTTCTTACTGTTCAGCT+GGG | + | chr2_4:3433534-3433553 | Msa0308990:intron | 40.0% | |
CGCGTAAAGCTTATAATCTC+TGG | - | chr2_4:3434105-3434124 | None:intergenic | 40.0% | |
ATAAATGCTGCTGGTCAACA+TGG | - | chr2_4:3434174-3434193 | None:intergenic | 40.0% | |
! | CAATTAGGACCCCATTGATT+TGG | + | chr2_4:3434231-3434250 | Msa0308990:intron | 40.0% |
AAGCAGAGTTCAATGGCAAT+AGG | - | chr2_4:3434352-3434371 | None:intergenic | 40.0% | |
TATCACGAAGCAGAGTTCAA+TGG | - | chr2_4:3434359-3434378 | None:intergenic | 40.0% | |
ATCTTGGACCTTGTAAGTAG+TGG | + | chr2_4:3434672-3434691 | Msa0308990:CDS | 40.0% | |
! | TACGAAACTGCTGCTTCTTA+TGG | + | chr2_4:3434819-3434838 | Msa0308990:intron | 40.0% |
TGAGATGCTTGAAAGATTGG+AGG | + | chr2_4:3434947-3434966 | Msa0308990:CDS | 40.0% | |
AAAGAAACTGGAGTTTGGGA+GGG | - | chr2_4:3435024-3435043 | None:intergenic | 40.0% | |
AAAAGAAACTGGAGTTTGGG+AGG | - | chr2_4:3435025-3435044 | None:intergenic | 40.0% | |
CTTCTAATTGTAGATTCGGC+AGG | + | chr2_4:3435056-3435075 | Msa0308990:intron | 40.0% | |
! | TCCCCAACCCTATTCATTTT+AGG | + | chr2_4:3435182-3435201 | Msa0308990:intron | 40.0% |
CCCTAAAATGAATAGGGTTG+GGG | - | chr2_4:3435186-3435205 | None:intergenic | 40.0% | |
! | CCCCAACCCTATTCATTTTA+GGG | + | chr2_4:3435183-3435202 | Msa0308990:intron | 40.0% |
CCCCTAAAATGAATAGGGTT+GGG | - | chr2_4:3435187-3435206 | None:intergenic | 40.0% | |
! | CCCAACCCTATTCATTTTAG+GGG | + | chr2_4:3435184-3435203 | Msa0308990:intron | 40.0% |
TCCCCTAAAATGAATAGGGT+TGG | - | chr2_4:3435188-3435207 | None:intergenic | 40.0% | |
!! | AACCCTATTCATTTTAGGGG+AGG | + | chr2_4:3435187-3435206 | Msa0308990:intron | 40.0% |
GATCCTCCCCTAAAATGAAT+AGG | - | chr2_4:3435193-3435212 | None:intergenic | 40.0% | |
CTTTGGCACACATATGACTA+TGG | - | chr2_4:3435407-3435426 | None:intergenic | 40.0% | |
AGTCATATGTGTGCCAAAGA+AGG | + | chr2_4:3435408-3435427 | Msa0308990:CDS | 40.0% | |
GACTTGTACAATGCCTTCTT+TGG | - | chr2_4:3435424-3435443 | None:intergenic | 40.0% | |
GTCTATACAGCAATTGAGAG+CGG | + | chr2_4:3435441-3435460 | Msa0308990:CDS | 40.0% | |
GGAATATTGTTGGGAGTTTG+TGG | + | chr2_4:3435517-3435536 | Msa0308990:intron | 40.0% | |
AAAGGACAACAGGAATCACA+CGG | - | chr2_4:3435600-3435619 | None:intergenic | 40.0% | |
GTTCATATGATGCAGATTGG+AGG | + | chr2_4:3435789-3435808 | Msa0308990:intron | 40.0% | |
! | TTGATAGTATCTTTGGGGGT+GGG | - | chr2_4:3435942-3435961 | None:intergenic | 40.0% |
! | ATTGATAGTATCTTTGGGGG+TGG | - | chr2_4:3435943-3435962 | None:intergenic | 40.0% |
AGATATTCCCACTTCTGCAT+CGG | + | chr2_4:3436016-3436035 | Msa0308990:three_prime_UTR | 40.0% | |
ATAAGATGACCAGCTCATTG+AGG | - | chr2_4:3436223-3436242 | None:intergenic | 40.0% | |
CTTTGCTTGGCAAACCAAGA+CGG | - | chr2_4:3431845-3431864 | None:intergenic | 45.0% | |
!! | TTGGTTTGCCAAGCAAAGGT+CGG | + | chr2_4:3431847-3431866 | Msa0308990:CDS | 45.0% |
CTTGAGAAGGTCGAGTGTAT+CGG | - | chr2_4:3431880-3431899 | None:intergenic | 45.0% | |
GTTGCTCAAATTCCTCAGGT+AGG | + | chr2_4:3431942-3431961 | Msa0308990:intron | 45.0% | |
TACGTTACGTTACCTACCTG+AGG | - | chr2_4:3431957-3431976 | None:intergenic | 45.0% | |
TACACTCCAGCTTTCCAACT+TGG | + | chr2_4:3432060-3432079 | Msa0308990:intron | 45.0% | |
TTATCCGGAGATCTTGACCT+TGG | + | chr2_4:3432124-3432143 | Msa0308990:CDS | 45.0% | |
GATACCAAGGTCAAGATCTC+CGG | - | chr2_4:3432131-3432150 | None:intergenic | 45.0% | |
GATCTTGACCTTGGTATCGT+AGG | + | chr2_4:3432133-3432152 | Msa0308990:CDS | 45.0% | |
GAATGGGCGCTATGTCTAAT+AGG | - | chr2_4:3432340-3432359 | None:intergenic | 45.0% | |
! | GGGTATAGTGTCTGAGATGT+TGG | - | chr2_4:3432423-3432442 | None:intergenic | 45.0% |
!! | TTCTTTGAAGCACCCATACC+CGG | + | chr2_4:3432961-3432980 | Msa0308990:intron | 45.0% |
TTTACATGAAGCCCGGGTAT+GGG | - | chr2_4:3432976-3432995 | None:intergenic | 45.0% | |
! | TTTTACATGAAGCCCGGGTA+TGG | - | chr2_4:3432977-3432996 | None:intergenic | 45.0% |
GGTTCCAAGCAGGAAAATTG+TGG | - | chr2_4:3433120-3433139 | None:intergenic | 45.0% | |
GGAAAAGTAAGGTTCCAAGC+AGG | - | chr2_4:3433130-3433149 | None:intergenic | 45.0% | |
CGATCTTATCATTGTGCACG+AGG | + | chr2_4:3433198-3433217 | Msa0308990:CDS | 45.0% | |
TATCATTGTGCACGAGGCTT+TGG | + | chr2_4:3433204-3433223 | Msa0308990:CDS | 45.0% | |
AATCCAGTTGCAACTCTCAG+AGG | - | chr2_4:3433420-3433439 | None:intergenic | 45.0% | |
GATAGCTATTGGGGTTTGGA+AGG | + | chr2_4:3433745-3433764 | Msa0308990:intron | 45.0% | |
CTGGTTCATTTGAAAGGAGG+AGG | + | chr2_4:3434277-3434296 | Msa0308990:intron | 45.0% | |
TTTGTTAGACTATCGAGCCC+AGG | + | chr2_4:3434318-3434337 | Msa0308990:intron | 45.0% | |
GAACTCTGCTTCGTGATAAC+TGG | + | chr2_4:3434361-3434380 | Msa0308990:intron | 45.0% | |
CAGCATCAACTAGATGGAGA+TGG | - | chr2_4:3434568-3434587 | None:intergenic | 45.0% | |
GGGAATTGCTGATGCTATCT+TGG | + | chr2_4:3434656-3434675 | Msa0308990:CDS | 45.0% | |
!!! | TGGAACTGTTTTGGAAAGCC+AGG | + | chr2_4:3434734-3434753 | Msa0308990:CDS | 45.0% |
! | AAAGATTGGAGGCACATCTG+AGG | + | chr2_4:3434958-3434977 | Msa0308990:CDS | 45.0% |
! | AAGATTGGAGGCACATCTGA+GGG | + | chr2_4:3434959-3434978 | Msa0308990:CDS | 45.0% |
AAGAAACTGGAGTTTGGGAG+GGG | - | chr2_4:3435023-3435042 | None:intergenic | 45.0% | |
CAGGTCACTGCAAATATGAG+AGG | + | chr2_4:3435075-3435094 | Msa0308990:intron | 45.0% | |
! | AGTACTGAGCCAACCATCAT+TGG | + | chr2_4:3435125-3435144 | Msa0308990:CDS | 45.0% |
CAGAAAACGGGACTTACAGT+GGG | - | chr2_4:3435349-3435368 | None:intergenic | 45.0% | |
TCCATCACGCTTGCAGAAAA+CGG | - | chr2_4:3435362-3435381 | None:intergenic | 45.0% | |
! | TTTCTGCAAGCGTGATGGAA+AGG | + | chr2_4:3435363-3435382 | Msa0308990:CDS | 45.0% |
GTGTGATTCCTGTTGTCCTT+TGG | + | chr2_4:3435599-3435618 | Msa0308990:intron | 45.0% | |
GAACGTAGTCAACAGGAAAC+TGG | - | chr2_4:3435773-3435792 | None:intergenic | 45.0% | |
TTGATGAGGAAACTCCCAGA+TGG | + | chr2_4:3435847-3435866 | Msa0308990:CDS | 45.0% | |
GTCCAAGTTTAGAAAGGAGC+TGG | - | chr2_4:3435875-3435894 | None:intergenic | 45.0% | |
! | TGATAGTATCTTTGGGGGTG+GGG | - | chr2_4:3435941-3435960 | None:intergenic | 45.0% |
TTGGTTAGATAAGTAGGGGG+TGG | + | chr2_4:3436101-3436120 | Msa0308990:three_prime_UTR | 45.0% | |
TGGTTAGATAAGTAGGGGGT+GGG | + | chr2_4:3436102-3436121 | Msa0308990:three_prime_UTR | 45.0% | |
!! | AATTATAAATTATAAAGTAT+AGG | + | chr2_4:3434039-3434058 | Msa0308990:intron | 5.0% |
CGGAGACTGGGTTTCCATTA+AGG | - | chr2_4:3431809-3431828 | None:intergenic | 50.0% | |
AAGACGGATCTCTTTCCTGG+CGG | - | chr2_4:3431829-3431848 | None:intergenic | 50.0% | |
ACCAAGACGGATCTCTTTCC+TGG | - | chr2_4:3431832-3431851 | None:intergenic | 50.0% | |
!! | CGTCTTGGTTTGCCAAGCAA+AGG | + | chr2_4:3431843-3431862 | Msa0308990:CDS | 50.0% |
GAAGACATCCGACCTTTGCT+TGG | - | chr2_4:3431858-3431877 | None:intergenic | 50.0% | |
CGATACACTCGACCTTCTCA+AGG | + | chr2_4:3431878-3431897 | Msa0308990:CDS | 50.0% | |
CTAGGGGTCTGCCAATTTAG+AGG | - | chr2_4:3432571-3432590 | None:intergenic | 50.0% | |
! | TGTCGCTTCACTTGCCAAGT+TGG | - | chr2_4:3432724-3432743 | None:intergenic | 50.0% |
!! | TCTTTGAAGCACCCATACCC+GGG | + | chr2_4:3432962-3432981 | Msa0308990:intron | 50.0% |
! | AAGCCTCTGAGAGTTGCAAC+TGG | + | chr2_4:3433414-3433433 | Msa0308990:CDS | 50.0% |
GACCCAGCTGAACAGTAAGA+AGG | - | chr2_4:3433539-3433558 | None:intergenic | 50.0% | |
! | GTGGCATTTTCGACTGCTGA+TGG | + | chr2_4:3433591-3433610 | Msa0308990:CDS | 50.0% |
CAAAGACTATCTCTCACCGC+AGG | - | chr2_4:3433633-3433652 | None:intergenic | 50.0% | |
TGGCAGCAGCATCAACTAGA+TGG | - | chr2_4:3434574-3434593 | None:intergenic | 50.0% | |
GCGAGCAGGAAATCGATGAT+TGG | + | chr2_4:3434897-3434916 | Msa0308990:CDS | 50.0% | |
TATGAGAGGAAGCAGTGCAG+AGG | + | chr2_4:3435089-3435108 | Msa0308990:CDS | 50.0% | |
! | TGAGCCAACCATCATTGGCT+GGG | + | chr2_4:3435130-3435149 | Msa0308990:CDS | 50.0% |
ATCCTCGGTTGTCTATCTGC+AGG | + | chr2_4:3435321-3435340 | Msa0308990:intron | 50.0% | |
TCCTCGGTTGTCTATCTGCA+GGG | + | chr2_4:3435322-3435341 | Msa0308990:intron | 50.0% | |
GCAGAAAACGGGACTTACAG+TGG | - | chr2_4:3435350-3435369 | None:intergenic | 50.0% | |
CCATCACGCTTGCAGAAAAC+GGG | - | chr2_4:3435361-3435380 | None:intergenic | 50.0% | |
TCATGCTTGTCGCACACCAA+AGG | - | chr2_4:3435618-3435637 | None:intergenic | 50.0% | |
ATGATGCAGATTGGAGGCAG+CGG | + | chr2_4:3435795-3435814 | Msa0308990:intron | 50.0% | |
CGCCAGCTCCTTTCTAAACT+TGG | + | chr2_4:3435870-3435889 | Msa0308990:CDS | 50.0% | |
CTACAAGCCGATGCAGAAGT+GGG | - | chr2_4:3436026-3436045 | None:intergenic | 50.0% | |
TTAGATAAGTAGGGGGTGGG+AGG | + | chr2_4:3436105-3436124 | Msa0308990:three_prime_UTR | 50.0% | |
TTCCACCTACCTCAATGAGC+TGG | + | chr2_4:3436211-3436230 | Msa0308990:three_prime_UTR | 50.0% | |
GATGACCAGCTCATTGAGGT+AGG | - | chr2_4:3436219-3436238 | None:intergenic | 50.0% | |
TCTCTTTCCTGGCGGAGACT+GGG | - | chr2_4:3431821-3431840 | None:intergenic | 55.0% | |
ATCTCTTTCCTGGCGGAGAC+TGG | - | chr2_4:3431822-3431841 | None:intergenic | 55.0% | |
GCCAGGAAAGAGATCCGTCT+TGG | + | chr2_4:3431828-3431847 | Msa0308990:CDS | 55.0% | |
! | GTTTTGCAGACACGCTGACC+TGG | - | chr2_4:3432183-3432202 | None:intergenic | 55.0% |
GGGGTCTGCCAATTTAGAGG+TGG | - | chr2_4:3432568-3432587 | None:intergenic | 55.0% | |
TTCACTGACAACTCCTGCCG+AGG | + | chr2_4:3432816-3432835 | Msa0308990:intron | 55.0% | |
CAACACTTATCAGCCTCGGC+AGG | - | chr2_4:3432832-3432851 | None:intergenic | 55.0% | |
!! | GTGCACGAGGCTTTGGAGTA+TGG | + | chr2_4:3433211-3433230 | Msa0308990:CDS | 55.0% |
TTCGACTGCTGATGGAGCAC+TGG | + | chr2_4:3433599-3433618 | Msa0308990:CDS | 55.0% | |
AGGAAGCAGTGCAGAGGAAG+TGG | + | chr2_4:3435095-3435114 | Msa0308990:CDS | 55.0% | |
CTGAGCCAACCATCATTGGC+TGG | + | chr2_4:3435129-3435148 | Msa0308990:CDS | 55.0% | |
GCAACCCAGCCAATGATGGT+TGG | - | chr2_4:3435137-3435156 | None:intergenic | 55.0% | |
! | ACCATCATTGGCTGGGTTGC+AGG | + | chr2_4:3435137-3435156 | Msa0308990:CDS | 55.0% |
ACCTGCAACCCAGCCAATGA+TGG | - | chr2_4:3435141-3435160 | None:intergenic | 55.0% | |
TCCCTGCAGATAGACAACCG+AGG | - | chr2_4:3435326-3435345 | None:intergenic | 55.0% | |
! | CCCGTTTTCTGCAAGCGTGA+TGG | + | chr2_4:3435358-3435377 | Msa0308990:CDS | 55.0% |
GTCGCACACCAAAGGACAAC+AGG | - | chr2_4:3435610-3435629 | None:intergenic | 55.0% | |
CCTACAAGCCGATGCAGAAG+TGG | - | chr2_4:3436027-3436046 | None:intergenic | 55.0% | |
!! | CCACTTCTGCATCGGCTTGT+AGG | + | chr2_4:3436024-3436043 | Msa0308990:three_prime_UTR | 55.0% |
GACCAGCTCATTGAGGTAGG+TGG | - | chr2_4:3436216-3436235 | None:intergenic | 55.0% | |
ATGGAAACCCAGTCTCCGCC+AGG | + | chr2_4:3431811-3431830 | Msa0308990:CDS | 60.0% | |
!! | GACTGCTGATGGAGCACTGG+AGG | + | chr2_4:3433602-3433621 | Msa0308990:CDS | 60.0% |
ACTATCGAGCCCAGGTCTCG+AGG | + | chr2_4:3434326-3434345 | Msa0308990:intron | 60.0% | |
GGCAATAGGCCTCGAGACCT+GGG | - | chr2_4:3434338-3434357 | None:intergenic | 60.0% | |
TGGCAATAGGCCTCGAGACC+TGG | - | chr2_4:3434339-3434358 | None:intergenic | 60.0% | |
AGGCTGCTCTTGTTGCGAGC+AGG | + | chr2_4:3434883-3434902 | Msa0308990:intron | 60.0% | |
GAGGCACATCTGAGGGCGAT+GGG | + | chr2_4:3434966-3434985 | Msa0308990:CDS | 60.0% | |
AGGCACATCTGAGGGCGATG+GGG | + | chr2_4:3434967-3434986 | Msa0308990:CDS | 60.0% | |
GAAAGGAGCTGGCGCCATCT+GGG | - | chr2_4:3435864-3435883 | None:intergenic | 60.0% | |
AGAAAGGAGCTGGCGCCATC+TGG | - | chr2_4:3435865-3435884 | None:intergenic | 60.0% | |
CATCGTCGTCGTCGTCGTCG+CGG | - | chr2_4:3431694-3431713 | None:intergenic | 65.0% | |
! | AGCACTGGAGGCAGCTCCTG+CGG | + | chr2_4:3433614-3433633 | Msa0308990:CDS | 65.0% |
! | GGAGGCACATCTGAGGGCGA+TGG | + | chr2_4:3434965-3434984 | Msa0308990:CDS | 65.0% |
GAGGGCGATGGGGCAGTTCA+CGG | + | chr2_4:3434977-3434996 | Msa0308990:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 3431509 | 3436332 | 3431509 | ID=Msa0308990;Name=Msa0308990 |
chr2_4 | mRNA | 3431509 | 3436332 | 3431509 | ID=Msa0308990-mRNA-1;Parent=Msa0308990;Name=Msa0308990-mRNA-1;_AED=0.10;_eAED=0.10;_QI=121|1|1|1|0.88|0.9|10|433|404 |
chr2_4 | exon | 3431509 | 3431959 | 3431509 | ID=Msa0308990-mRNA-1:exon:998;Parent=Msa0308990-mRNA-1 |
chr2_4 | exon | 3432070 | 3432183 | 3432070 | ID=Msa0308990-mRNA-1:exon:999;Parent=Msa0308990-mRNA-1 |
chr2_4 | exon | 3433190 | 3433255 | 3433190 | ID=Msa0308990-mRNA-1:exon:1000;Parent=Msa0308990-mRNA-1 |
chr2_4 | exon | 3433339 | 3433446 | 3433339 | ID=Msa0308990-mRNA-1:exon:1001;Parent=Msa0308990-mRNA-1 |
chr2_4 | exon | 3433552 | 3433635 | 3433552 | ID=Msa0308990-mRNA-1:exon:1002;Parent=Msa0308990-mRNA-1 |
chr2_4 | exon | 3434654 | 3434755 | 3434654 | ID=Msa0308990-mRNA-1:exon:1003;Parent=Msa0308990-mRNA-1 |
chr2_4 | exon | 3434885 | 3434998 | 3434885 | ID=Msa0308990-mRNA-1:exon:1004;Parent=Msa0308990-mRNA-1 |
chr2_4 | exon | 3435078 | 3435158 | 3435078 | ID=Msa0308990-mRNA-1:exon:1005;Parent=Msa0308990-mRNA-1 |
chr2_4 | exon | 3435343 | 3435462 | 3435343 | ID=Msa0308990-mRNA-1:exon:1006;Parent=Msa0308990-mRNA-1 |
chr2_4 | exon | 3435804 | 3436332 | 3435804 | ID=Msa0308990-mRNA-1:exon:1007;Parent=Msa0308990-mRNA-1 |
chr2_4 | five_prime_UTR | 3431509 | 3431629 | 3431509 | ID=Msa0308990-mRNA-1:five_prime_utr;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3431630 | 3431959 | 3431630 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3432070 | 3432183 | 3432070 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3433190 | 3433255 | 3433190 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3433339 | 3433446 | 3433339 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3433552 | 3433635 | 3433552 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3434654 | 3434755 | 3434654 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3434885 | 3434998 | 3434885 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3435078 | 3435158 | 3435078 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3435343 | 3435462 | 3435343 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | CDS | 3435804 | 3435899 | 3435804 | ID=Msa0308990-mRNA-1:cds;Parent=Msa0308990-mRNA-1 |
chr2_4 | three_prime_UTR | 3435900 | 3436332 | 3435900 | ID=Msa0308990-mRNA-1:three_prime_utr;Parent=Msa0308990-mRNA-1 |
Gene Sequence |
Protein sequence |