Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234110 | XP_003593591.1 | 85.816 | 141 | 19 | 1 | 1 | 140 | 1 | 141 | 8.74e-78 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234110 | sp|F4JIJ7|BH162_ARATH | 41.781 | 146 | 74 | 4 | 3 | 137 | 7 | 152 | 9.81e-28 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234110 | G7IPU7 | 85.816 | 141 | 19 | 1 | 1 | 140 | 1 | 141 | 4.17e-78 | 238 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0234110 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0191040 | Msa0234110 | 0.835636 | 1.495630e-56 | -8.615850e-47 |
| Msa0233340 | Msa0234110 | 0.835304 | 1.813948e-56 | -8.615850e-47 |
| Msa0234110 | Msa0301200 | 0.953861 | 1.075759e-111 | -8.615850e-47 |
| Msa0234110 | Msa0311690 | 0.833687 | 4.622858e-56 | -8.615850e-47 |
| Msa0234110 | Msa0312840 | 0.911885 | 3.662786e-83 | -8.615850e-47 |
| Msa0234110 | Msa1390850 | 0.870248 | 1.683721e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234110 | MtrunA17_Chr2g0282341 | 87.129 | 101 | 13 | 0 | 40 | 140 | 3 | 103 | 1.16e-58 | 178 |
| Msa0234110 | MtrunA17_Chr2g0324511 | 44.444 | 135 | 70 | 2 | 6 | 135 | 12 | 146 | 1.88e-32 | 113 |
| Msa0234110 | MtrunA17_Chr4g0040201 | 45.833 | 144 | 63 | 5 | 3 | 136 | 7 | 145 | 2.97e-29 | 106 |
| Msa0234110 | MtrunA17_Chr2g0324521 | 41.053 | 95 | 56 | 0 | 41 | 135 | 5 | 99 | 5.52e-21 | 82.8 |
| Msa0234110 | MtrunA17_Chr2g0324571 | 38.144 | 97 | 58 | 1 | 41 | 135 | 5 | 101 | 2.35e-20 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234110 | AT4G20970.1 | 41.781 | 146 | 74 | 4 | 3 | 137 | 7 | 152 | 9.97e-29 | 104 |
Find 29 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTTAGGTAGGAGAATT+TGG | 0.200977 | 2_2:-6616323 | Msa0234110:intron |
| TTAGAGGTTGTTCTAATAAC+TGG | 0.223327 | 2_2:-6617431 | Msa0234110:CDS |
| AAAATTAAGATACAACAAAT+TGG | 0.306857 | 2_2:-6617461 | Msa0234110:CDS |
| TTTCTATTCATATTCACATT+TGG | 0.306963 | 2_2:+6617509 | None:intergenic |
| ACAAATTGGTTTAGTCTTAG+AGG | 0.319445 | 2_2:-6617447 | Msa0234110:CDS |
| TCTGCCTCATCAAACTTCTA+AGG | 0.344529 | 2_2:-6617856 | Msa0234110:intron |
| CTGTCAACTCTTGATGAACT+AGG | 0.359161 | 2_2:+6617942 | None:intergenic |
| TATTGTCAATGCAAGTTATA+AGG | 0.360092 | 2_2:-6617348 | Msa0234110:intron |
| GGTTGTTCTAATAACTGGAT+TGG | 0.435753 | 2_2:-6617426 | Msa0234110:CDS |
| CTTCGTGTTCTTCATGAAGA+AGG | 0.454763 | 2_2:-6617377 | Msa0234110:CDS |
| TTGAGTATCTCCTGTCATTG+AGG | 0.471981 | 2_2:-6617988 | Msa0234110:five_prime_UTR |
| GTATCTCCTGTCATTGAGGT+TGG | 0.502051 | 2_2:-6617984 | Msa0234110:five_prime_UTR |
| GAAAAGAAGAACTTTCTACT+AGG | 0.532951 | 2_2:-6617542 | Msa0234110:CDS |
| TGTCAACTCTTGATGAACTA+GGG | 0.540967 | 2_2:+6617943 | None:intergenic |
| GATCAACTTGGAGAAAATGA+AGG | 0.550998 | 2_2:-6617564 | Msa0234110:CDS |
| CTAGTTCATCAAGAGTTGAC+AGG | 0.559038 | 2_2:-6617941 | Msa0234110:CDS |
| ACTGTTCCAACCTCAATGAC+AGG | 0.576213 | 2_2:+6617978 | None:intergenic |
| ACTTTCTACTAGGAATTCAA+AGG | 0.595040 | 2_2:-6617532 | Msa0234110:CDS |
| AAAGAAATTACAGATCAACT+TGG | 0.602314 | 2_2:-6617576 | Msa0234110:CDS |
| CATTGAGGTTGGAACAGTGA+TGG | 0.615967 | 2_2:-6617973 | Msa0234110:exon |
| GAGACCTTAGAAGTTTGATG+AGG | 0.624740 | 2_2:+6617852 | None:intergenic |
| ATGAATAGAAACAAGAACAT+GGG | 0.625623 | 2_2:-6617497 | Msa0234110:CDS |
| TATGAATAGAAACAAGAACA+TGG | 0.630359 | 2_2:-6617498 | Msa0234110:CDS |
| TCTGATGCAGGCGATTTCAG+CGG | 0.655278 | 2_2:-6617630 | Msa0234110:intron |
| GCAGAAATGAGTTGAGCTTG+TGG | 0.677546 | 2_2:+6617874 | None:intergenic |
| CTTCTTCATGAAGAACACGA+AGG | 0.679799 | 2_2:+6617378 | None:intergenic |
| AATTTGGTAATGAAGCTGCA+AGG | 0.690882 | 2_2:-6616307 | Msa0234110:CDS |
| GAAATGAGTTGAGCTTGTGG+CGG | 0.691957 | 2_2:+6617877 | None:intergenic |
| TTCAGCGGCAGATCAGCTCG+AGG | 0.698732 | 2_2:-6617615 | Msa0234110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAGAAGTTTTTTTTTT+TGG | + | chr2_2:6617315-6617334 | None:intergenic | 10.0% |
| !!! | TATGATTTTTATAATATTTG+TGG | - | chr2_2:6617601-6617620 | Msa0234110:CDS | 10.0% |
| !! | TTGATAAAAATATGATTATT+TGG | - | chr2_2:6617865-6617884 | Msa0234110:CDS | 10.0% |
| !!! | TAATTAGAAGTTTTTTTTTT+TGG | + | chr2_2:6617315-6617334 | None:intergenic | 10.0% |
| !!! | TATGATTTTTATAATATTTG+TGG | - | chr2_2:6617601-6617620 | Msa0234110:CDS | 10.0% |
| !! | TTGATAAAAATATGATTATT+TGG | - | chr2_2:6617865-6617884 | Msa0234110:CDS | 10.0% |
| !!! | ATTTGTTGTATCTTAATTTT+TGG | + | chr2_2:6616842-6616861 | None:intergenic | 15.0% |
| !! | AAAATTAAGATACAACAAAT+TGG | - | chr2_2:6616842-6616861 | Msa0234110:intron | 15.0% |
| !! | TTAATTTCCTTTAATATGAA+CGG | - | chr2_2:6617035-6617054 | Msa0234110:intron | 15.0% |
| !!! | TTTTTTTTTTGGAAAATTTG+AGG | + | chr2_2:6617304-6617323 | None:intergenic | 15.0% |
| !!! | TTTAGTTATTTTTTTCTTTG+AGG | - | chr2_2:6617488-6617507 | Msa0234110:CDS | 15.0% |
| !! | AAAGTTAACTATTTATAGAT+AGG | + | chr2_2:6617945-6617964 | None:intergenic | 15.0% |
| !!! | ATTTGTTGTATCTTAATTTT+TGG | + | chr2_2:6616842-6616861 | None:intergenic | 15.0% |
| !! | AAAATTAAGATACAACAAAT+TGG | - | chr2_2:6616842-6616861 | Msa0234110:intron | 15.0% |
| !! | TTAATTTCCTTTAATATGAA+CGG | - | chr2_2:6617035-6617054 | Msa0234110:intron | 15.0% |
| !!! | TTTTTTTTTTGGAAAATTTG+AGG | + | chr2_2:6617304-6617323 | None:intergenic | 15.0% |
| !!! | TTTAGTTATTTTTTTCTTTG+AGG | - | chr2_2:6617488-6617507 | Msa0234110:CDS | 15.0% |
| !! | AAAGTTAACTATTTATAGAT+AGG | + | chr2_2:6617945-6617964 | None:intergenic | 15.0% |
| !! | GAAAAAAATAGAATTAGTGA+CGG | - | chr2_2:6616535-6616554 | Msa0234110:intron | 20.0% |
| !! | ATGTTAGTATTGTTAGTATT+TGG | - | chr2_2:6616634-6616653 | Msa0234110:intron | 20.0% |
| !!! | TAATTTAATTTATCTGATGC+AGG | - | chr2_2:6616661-6616680 | Msa0234110:intron | 20.0% |
| !! | TTTCTATTCATATTCACATT+TGG | + | chr2_2:6616797-6616816 | None:intergenic | 20.0% |
| !!! | ATTAACTTGTGTCTTAATTA+AGG | - | chr2_2:6617203-6617222 | Msa0234110:intron | 20.0% |
| !! | ATACTTAAATACATGAATCA+GGG | + | chr2_2:6617466-6617485 | None:intergenic | 20.0% |
| !! | AATTTAGTTGTCATTATAAG+TGG | - | chr2_2:6617516-6617535 | Msa0234110:CDS | 20.0% |
| !! | TTCAAACTGATATTTGAATA+CGG | - | chr2_2:6617916-6617935 | Msa0234110:CDS | 20.0% |
| !! | GAAAAAAATAGAATTAGTGA+CGG | - | chr2_2:6616535-6616554 | Msa0234110:intron | 20.0% |
| !! | ATGTTAGTATTGTTAGTATT+TGG | - | chr2_2:6616634-6616653 | Msa0234110:intron | 20.0% |
| !!! | TAATTTAATTTATCTGATGC+AGG | - | chr2_2:6616661-6616680 | Msa0234110:intron | 20.0% |
| !! | TTTCTATTCATATTCACATT+TGG | + | chr2_2:6616797-6616816 | None:intergenic | 20.0% |
| !!! | ATTAACTTGTGTCTTAATTA+AGG | - | chr2_2:6617203-6617222 | Msa0234110:intron | 20.0% |
| !! | ATACTTAAATACATGAATCA+GGG | + | chr2_2:6617466-6617485 | None:intergenic | 20.0% |
| !! | AATTTAGTTGTCATTATAAG+TGG | - | chr2_2:6617516-6617535 | Msa0234110:CDS | 20.0% |
| !! | TTCAAACTGATATTTGAATA+CGG | - | chr2_2:6617916-6617935 | Msa0234110:CDS | 20.0% |
| !! | ATTTCTTCTTTTGCTTTCAA+TGG | + | chr2_2:6616392-6616411 | None:intergenic | 25.0% |
| !!! | GTCATTATGTTTTAAAACGA+CGG | - | chr2_2:6616611-6616630 | Msa0234110:intron | 25.0% |
| ! | AAAGAAATTACAGATCAACT+TGG | - | chr2_2:6616727-6616746 | Msa0234110:intron | 25.0% |
| ! | TATGAATAGAAACAAGAACA+TGG | - | chr2_2:6616805-6616824 | Msa0234110:intron | 25.0% |
| ! | ATGAATAGAAACAAGAACAT+GGG | - | chr2_2:6616806-6616825 | Msa0234110:intron | 25.0% |
| ! | TATTGTCAATGCAAGTTATA+AGG | - | chr2_2:6616955-6616974 | Msa0234110:intron | 25.0% |
| ! | GTAACAATTTATGATTTACC+TGG | + | chr2_2:6617015-6617034 | None:intergenic | 25.0% |
| !! | CATTTAGTGAATGATTTTGT+CGG | + | chr2_2:6617338-6617357 | None:intergenic | 25.0% |
| ! | CATACTTAAATACATGAATC+AGG | + | chr2_2:6617467-6617486 | None:intergenic | 25.0% |
| ! | AGTCAATAACATCAAACTAA+CGG | + | chr2_2:6617797-6617816 | None:intergenic | 25.0% |
| !! | TGATGTTATTGACTACAATA+TGG | - | chr2_2:6617803-6617822 | Msa0234110:intron | 25.0% |
| ! | GTTAACTATTTATAGATAGG+AGG | + | chr2_2:6617942-6617961 | None:intergenic | 25.0% |
| ! | CTAATTGCATTGTTCTATTT+AGG | - | chr2_2:6617967-6617986 | Msa0234110:exon | 25.0% |
| !! | ATTTCTTCTTTTGCTTTCAA+TGG | + | chr2_2:6616392-6616411 | None:intergenic | 25.0% |
| !!! | GTCATTATGTTTTAAAACGA+CGG | - | chr2_2:6616611-6616630 | Msa0234110:intron | 25.0% |
| ! | AAAGAAATTACAGATCAACT+TGG | - | chr2_2:6616727-6616746 | Msa0234110:intron | 25.0% |
| ! | TATGAATAGAAACAAGAACA+TGG | - | chr2_2:6616805-6616824 | Msa0234110:intron | 25.0% |
| ! | ATGAATAGAAACAAGAACAT+GGG | - | chr2_2:6616806-6616825 | Msa0234110:intron | 25.0% |
| ! | TATTGTCAATGCAAGTTATA+AGG | - | chr2_2:6616955-6616974 | Msa0234110:intron | 25.0% |
| ! | GTAACAATTTATGATTTACC+TGG | + | chr2_2:6617015-6617034 | None:intergenic | 25.0% |
| !! | CATTTAGTGAATGATTTTGT+CGG | + | chr2_2:6617338-6617357 | None:intergenic | 25.0% |
| ! | CATACTTAAATACATGAATC+AGG | + | chr2_2:6617467-6617486 | None:intergenic | 25.0% |
| ! | AGTCAATAACATCAAACTAA+CGG | + | chr2_2:6617797-6617816 | None:intergenic | 25.0% |
| !! | TGATGTTATTGACTACAATA+TGG | - | chr2_2:6617803-6617822 | Msa0234110:intron | 25.0% |
| ! | GTTAACTATTTATAGATAGG+AGG | + | chr2_2:6617942-6617961 | None:intergenic | 25.0% |
| ! | CTAATTGCATTGTTCTATTT+AGG | - | chr2_2:6617967-6617986 | Msa0234110:exon | 25.0% |
| GAAAAGAAGAACTTTCTACT+AGG | - | chr2_2:6616761-6616780 | Msa0234110:intron | 30.0% | |
| ACTTTCTACTAGGAATTCAA+AGG | - | chr2_2:6616771-6616790 | Msa0234110:intron | 30.0% | |
| !! | ACAAATTGGTTTAGTCTTAG+AGG | - | chr2_2:6616856-6616875 | Msa0234110:intron | 30.0% |
| TTAGAGGTTGTTCTAATAAC+TGG | - | chr2_2:6616872-6616891 | Msa0234110:intron | 30.0% | |
| ACATGATCCGTTCATATTAA+AGG | + | chr2_2:6617045-6617064 | None:intergenic | 30.0% | |
| !! | TTCCTTAACTTGTGTTCTTA+AGG | + | chr2_2:6617077-6617096 | None:intergenic | 30.0% |
| CTTGCACTTGATTTCATATT+GGG | + | chr2_2:6617245-6617264 | None:intergenic | 30.0% | |
| TCTTGCACTTGATTTCATAT+TGG | + | chr2_2:6617246-6617265 | None:intergenic | 30.0% | |
| ATATGAAATCAAGTGCAAGA+AGG | - | chr2_2:6617246-6617265 | Msa0234110:intron | 30.0% | |
| ! | GTCTTACATACTTTTACGTA+TGG | + | chr2_2:6617369-6617388 | None:intergenic | 30.0% |
| !! | GTCAATTATGCTTTGTTTCT+AGG | - | chr2_2:6617401-6617420 | Msa0234110:CDS | 30.0% |
| ! | TCTACCGAATATTTTCTCAA+AGG | - | chr2_2:6617754-6617773 | Msa0234110:intron | 30.0% |
| ! | CTACCGAATATTTTCTCAAA+GGG | - | chr2_2:6617755-6617774 | Msa0234110:intron | 30.0% |
| ! | TACCGAATATTTTCTCAAAG+GGG | - | chr2_2:6617756-6617775 | Msa0234110:intron | 30.0% |
| ! | TACCCCTTTGAGAAAATATT+CGG | + | chr2_2:6617761-6617780 | None:intergenic | 30.0% |
| TCAATAACATCAAACTAACG+GGG | + | chr2_2:6617795-6617814 | None:intergenic | 30.0% | |
| GTCAATAACATCAAACTAAC+GGG | + | chr2_2:6617796-6617815 | None:intergenic | 30.0% | |
| TTGCATTGTTCTATTTAGGT+AGG | - | chr2_2:6617971-6617990 | Msa0234110:exon | 30.0% | |
| TCTATTTAGGTAGGAGAATT+TGG | - | chr2_2:6617980-6617999 | Msa0234110:five_prime_UTR | 30.0% | |
| GAAAAGAAGAACTTTCTACT+AGG | - | chr2_2:6616761-6616780 | Msa0234110:intron | 30.0% | |
| ACTTTCTACTAGGAATTCAA+AGG | - | chr2_2:6616771-6616790 | Msa0234110:intron | 30.0% | |
| !! | ACAAATTGGTTTAGTCTTAG+AGG | - | chr2_2:6616856-6616875 | Msa0234110:intron | 30.0% |
| TTAGAGGTTGTTCTAATAAC+TGG | - | chr2_2:6616872-6616891 | Msa0234110:intron | 30.0% | |
| ACATGATCCGTTCATATTAA+AGG | + | chr2_2:6617045-6617064 | None:intergenic | 30.0% | |
| !! | TTCCTTAACTTGTGTTCTTA+AGG | + | chr2_2:6617077-6617096 | None:intergenic | 30.0% |
| CTTGCACTTGATTTCATATT+GGG | + | chr2_2:6617245-6617264 | None:intergenic | 30.0% | |
| TCTTGCACTTGATTTCATAT+TGG | + | chr2_2:6617246-6617265 | None:intergenic | 30.0% | |
| ATATGAAATCAAGTGCAAGA+AGG | - | chr2_2:6617246-6617265 | Msa0234110:intron | 30.0% | |
| ! | GTCTTACATACTTTTACGTA+TGG | + | chr2_2:6617369-6617388 | None:intergenic | 30.0% |
| !! | GTCAATTATGCTTTGTTTCT+AGG | - | chr2_2:6617401-6617420 | Msa0234110:CDS | 30.0% |
| ! | TCTACCGAATATTTTCTCAA+AGG | - | chr2_2:6617754-6617773 | Msa0234110:intron | 30.0% |
| ! | CTACCGAATATTTTCTCAAA+GGG | - | chr2_2:6617755-6617774 | Msa0234110:intron | 30.0% |
| ! | TACCGAATATTTTCTCAAAG+GGG | - | chr2_2:6617756-6617775 | Msa0234110:intron | 30.0% |
| ! | TACCCCTTTGAGAAAATATT+CGG | + | chr2_2:6617761-6617780 | None:intergenic | 30.0% |
| TCAATAACATCAAACTAACG+GGG | + | chr2_2:6617795-6617814 | None:intergenic | 30.0% | |
| GTCAATAACATCAAACTAAC+GGG | + | chr2_2:6617796-6617815 | None:intergenic | 30.0% | |
| TTGCATTGTTCTATTTAGGT+AGG | - | chr2_2:6617971-6617990 | Msa0234110:exon | 30.0% | |
| TCTATTTAGGTAGGAGAATT+TGG | - | chr2_2:6617980-6617999 | Msa0234110:five_prime_UTR | 30.0% | |
| TGTCAACTCTTGATGAACTA+GGG | + | chr2_2:6616363-6616382 | None:intergenic | 35.0% | |
| CTAAGAGAAGAAGAGAGTAA+AGG | + | chr2_2:6616486-6616505 | None:intergenic | 35.0% | |
| GATCAACTTGGAGAAAATGA+AGG | - | chr2_2:6616739-6616758 | Msa0234110:intron | 35.0% | |
| GGTTGTTCTAATAACTGGAT+TGG | - | chr2_2:6616877-6616896 | Msa0234110:intron | 35.0% | |
| TGCCTTAAGAACACAAGTTA+AGG | - | chr2_2:6617072-6617091 | Msa0234110:intron | 35.0% | |
| ! | CAAGCTTTAGTTTCACCTAA+GGG | + | chr2_2:6617441-6617460 | None:intergenic | 35.0% |
| ! | TCAAGCTTTAGTTTCACCTA+AGG | + | chr2_2:6617442-6617461 | None:intergenic | 35.0% |
| !! | AATTTGGTAATGAAGCTGCA+AGG | - | chr2_2:6617996-6618015 | Msa0234110:five_prime_UTR | 35.0% |
| TGTCAACTCTTGATGAACTA+GGG | + | chr2_2:6616363-6616382 | None:intergenic | 35.0% | |
| CTAAGAGAAGAAGAGAGTAA+AGG | + | chr2_2:6616486-6616505 | None:intergenic | 35.0% | |
| GATCAACTTGGAGAAAATGA+AGG | - | chr2_2:6616739-6616758 | Msa0234110:intron | 35.0% | |
| GGTTGTTCTAATAACTGGAT+TGG | - | chr2_2:6616877-6616896 | Msa0234110:intron | 35.0% | |
| TGCCTTAAGAACACAAGTTA+AGG | - | chr2_2:6617072-6617091 | Msa0234110:intron | 35.0% | |
| ! | CAAGCTTTAGTTTCACCTAA+GGG | + | chr2_2:6617441-6617460 | None:intergenic | 35.0% |
| ! | TCAAGCTTTAGTTTCACCTA+AGG | + | chr2_2:6617442-6617461 | None:intergenic | 35.0% |
| !! | AATTTGGTAATGAAGCTGCA+AGG | - | chr2_2:6617996-6618015 | Msa0234110:five_prime_UTR | 35.0% |
| TTGAGTATCTCCTGTCATTG+AGG | - | chr2_2:6616315-6616334 | Msa0234110:intron | 40.0% | |
| CTGTCAACTCTTGATGAACT+AGG | + | chr2_2:6616364-6616383 | None:intergenic | 40.0% | |
| CTAGTTCATCAAGAGTTGAC+AGG | - | chr2_2:6616362-6616381 | Msa0234110:intron | 40.0% | |
| TCTGCCTCATCAAACTTCTA+AGG | - | chr2_2:6616447-6616466 | Msa0234110:intron | 40.0% | |
| GAGACCTTAGAAGTTTGATG+AGG | + | chr2_2:6616454-6616473 | None:intergenic | 40.0% | |
| CTTCTTCATGAAGAACACGA+AGG | + | chr2_2:6616928-6616947 | None:intergenic | 40.0% | |
| CTTCGTGTTCTTCATGAAGA+AGG | - | chr2_2:6616926-6616945 | Msa0234110:intron | 40.0% | |
| TTTCCATTCAATACACTGCC+AGG | - | chr2_2:6616994-6617013 | Msa0234110:intron | 40.0% | |
| TTACCTGGCAGTGTATTGAA+TGG | + | chr2_2:6617000-6617019 | None:intergenic | 40.0% | |
| CACATGACCTCGAAGTTATA+GGG | - | chr2_2:6617276-6617295 | Msa0234110:intron | 40.0% | |
| ACATGACCTCGAAGTTATAG+GGG | - | chr2_2:6617277-6617296 | Msa0234110:intron | 40.0% | |
| GTAAATGTCTATGTGCCCTT+AGG | - | chr2_2:6617423-6617442 | Msa0234110:CDS | 40.0% | |
| TTGAGTATCTCCTGTCATTG+AGG | - | chr2_2:6616315-6616334 | Msa0234110:intron | 40.0% | |
| CTGTCAACTCTTGATGAACT+AGG | + | chr2_2:6616364-6616383 | None:intergenic | 40.0% | |
| CTAGTTCATCAAGAGTTGAC+AGG | - | chr2_2:6616362-6616381 | Msa0234110:intron | 40.0% | |
| TCTGCCTCATCAAACTTCTA+AGG | - | chr2_2:6616447-6616466 | Msa0234110:intron | 40.0% | |
| GAGACCTTAGAAGTTTGATG+AGG | + | chr2_2:6616454-6616473 | None:intergenic | 40.0% | |
| CTTCTTCATGAAGAACACGA+AGG | + | chr2_2:6616928-6616947 | None:intergenic | 40.0% | |
| CTTCGTGTTCTTCATGAAGA+AGG | - | chr2_2:6616926-6616945 | Msa0234110:intron | 40.0% | |
| TTTCCATTCAATACACTGCC+AGG | - | chr2_2:6616994-6617013 | Msa0234110:intron | 40.0% | |
| TTACCTGGCAGTGTATTGAA+TGG | + | chr2_2:6617000-6617019 | None:intergenic | 40.0% | |
| CACATGACCTCGAAGTTATA+GGG | - | chr2_2:6617276-6617295 | Msa0234110:intron | 40.0% | |
| ACATGACCTCGAAGTTATAG+GGG | - | chr2_2:6617277-6617296 | Msa0234110:intron | 40.0% | |
| GTAAATGTCTATGTGCCCTT+AGG | - | chr2_2:6617423-6617442 | Msa0234110:CDS | 40.0% | |
| GTATCTCCTGTCATTGAGGT+TGG | - | chr2_2:6616319-6616338 | Msa0234110:intron | 45.0% | |
| ACTGTTCCAACCTCAATGAC+AGG | + | chr2_2:6616328-6616347 | None:intergenic | 45.0% | |
| CATTGAGGTTGGAACAGTGA+TGG | - | chr2_2:6616330-6616349 | Msa0234110:intron | 45.0% | |
| ! | GAAATGAGTTGAGCTTGTGG+CGG | + | chr2_2:6616429-6616448 | None:intergenic | 45.0% |
| ! | GCAGAAATGAGTTGAGCTTG+TGG | + | chr2_2:6616432-6616451 | None:intergenic | 45.0% |
| ACTTCGAGGTCATGTGCTAA+AGG | + | chr2_2:6617272-6617291 | None:intergenic | 45.0% | |
| GCACATGACCTCGAAGTTAT+AGG | - | chr2_2:6617275-6617294 | Msa0234110:intron | 45.0% | |
| GTATCTCCTGTCATTGAGGT+TGG | - | chr2_2:6616319-6616338 | Msa0234110:intron | 45.0% | |
| ACTGTTCCAACCTCAATGAC+AGG | + | chr2_2:6616328-6616347 | None:intergenic | 45.0% | |
| CATTGAGGTTGGAACAGTGA+TGG | - | chr2_2:6616330-6616349 | Msa0234110:intron | 45.0% | |
| ! | GAAATGAGTTGAGCTTGTGG+CGG | + | chr2_2:6616429-6616448 | None:intergenic | 45.0% |
| ! | GCAGAAATGAGTTGAGCTTG+TGG | + | chr2_2:6616432-6616451 | None:intergenic | 45.0% |
| ACTTCGAGGTCATGTGCTAA+AGG | + | chr2_2:6617272-6617291 | None:intergenic | 45.0% | |
| GCACATGACCTCGAAGTTAT+AGG | - | chr2_2:6617275-6617294 | Msa0234110:intron | 45.0% | |
| !! | TTATTTAATAAACAAAATAA+AGG | - | chr2_2:6617691-6617710 | Msa0234110:intron | 5.0% |
| !! | TTATTTAATAAACAAAATAA+AGG | - | chr2_2:6617691-6617710 | Msa0234110:intron | 5.0% |
| TCTGATGCAGGCGATTTCAG+CGG | - | chr2_2:6616673-6616692 | Msa0234110:intron | 50.0% | |
| TGAGGTCCCCTATAACTTCG+AGG | + | chr2_2:6617286-6617305 | None:intergenic | 50.0% | |
| TCTGATGCAGGCGATTTCAG+CGG | - | chr2_2:6616673-6616692 | Msa0234110:intron | 50.0% | |
| TGAGGTCCCCTATAACTTCG+AGG | + | chr2_2:6617286-6617305 | None:intergenic | 50.0% | |
| TTCAGCGGCAGATCAGCTCG+AGG | - | chr2_2:6616688-6616707 | Msa0234110:intron | 60.0% | |
| TTCAGCGGCAGATCAGCTCG+AGG | - | chr2_2:6616688-6616707 | Msa0234110:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 6616291 | 6618034 | 6616291 | ID=Msa0234110;Name=Msa0234110 |
| chr2_2 | mRNA | 6616291 | 6618034 | 6616291 | ID=Msa0234110-mRNA-1;Parent=Msa0234110;Name=Msa0234110-mRNA-1;_AED=0.23;_eAED=0.23;_QI=58|0.5|0.33|0.66|1|1|3|0|151 |
| chr2_2 | exon | 6616291 | 6616332 | 6616291 | ID=Msa0234110-mRNA-1:exon:2953;Parent=Msa0234110-mRNA-1 |
| chr2_2 | exon | 6617349 | 6617642 | 6617349 | ID=Msa0234110-mRNA-1:exon:2952;Parent=Msa0234110-mRNA-1 |
| chr2_2 | exon | 6617857 | 6618034 | 6617857 | ID=Msa0234110-mRNA-1:exon:2951;Parent=Msa0234110-mRNA-1 |
| chr2_2 | five_prime_UTR | 6617977 | 6618034 | 6617977 | ID=Msa0234110-mRNA-1:five_prime_utr;Parent=Msa0234110-mRNA-1 |
| chr2_2 | CDS | 6617857 | 6617976 | 6617857 | ID=Msa0234110-mRNA-1:cds;Parent=Msa0234110-mRNA-1 |
| chr2_2 | CDS | 6617349 | 6617642 | 6617349 | ID=Msa0234110-mRNA-1:cds;Parent=Msa0234110-mRNA-1 |
| chr2_2 | CDS | 6616291 | 6616332 | 6616291 | ID=Msa0234110-mRNA-1:cds;Parent=Msa0234110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
