Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311690 | XP_003593429.1 | 99.153 | 118 | 1 | 0 | 1 | 118 | 1 | 118 | 2.68e-78 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311690 | sp|O81831|CARP1_ARATH | 58.824 | 102 | 41 | 1 | 14 | 114 | 19 | 120 | 8.41e-37 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004870 | Msa0311690 | 0.826944 | 2.054352e-54 | -8.615850e-47 |
| Msa0004880 | Msa0311690 | 0.834930 | 2.253658e-56 | -8.615850e-47 |
| Msa0004930 | Msa0311690 | 0.803298 | 3.726002e-49 | -8.615850e-47 |
| Msa0012440 | Msa0311690 | 0.815744 | 7.903922e-52 | -8.615850e-47 |
| Msa0029910 | Msa0311690 | 0.808832 | 2.551543e-50 | -8.615850e-47 |
| Msa0036430 | Msa0311690 | 0.829214 | 5.834479e-55 | -8.615850e-47 |
| Msa0044100 | Msa0311690 | 0.810921 | 9.060955e-51 | -8.615850e-47 |
| Msa0051780 | Msa0311690 | 0.820944 | 5.247037e-53 | -8.615850e-47 |
| Msa0051790 | Msa0311690 | 0.836394 | 9.602286e-57 | -8.615850e-47 |
| Msa0057240 | Msa0311690 | 0.810949 | 8.938789e-51 | -8.615850e-47 |
| Msa0078430 | Msa0311690 | 0.851901 | 6.562861e-61 | -8.615850e-47 |
| Msa0084500 | Msa0311690 | 0.818892 | 1.546415e-52 | -8.615850e-47 |
| Msa0095540 | Msa0311690 | 0.817020 | 4.093976e-52 | -8.615850e-47 |
| Msa0096000 | Msa0311690 | 0.819561 | 1.088914e-52 | -8.615850e-47 |
| Msa0106790 | Msa0311690 | 0.807951 | 3.933246e-50 | -8.615850e-47 |
| Msa0130570 | Msa0311690 | 0.817927 | 2.558091e-52 | -8.615850e-47 |
| Msa0140780 | Msa0311690 | 0.800437 | 1.441643e-48 | -8.615850e-47 |
| Msa0141100 | Msa0311690 | 0.846070 | 2.735036e-59 | -8.615850e-47 |
| Msa0148340 | Msa0311690 | 0.820153 | 7.971829e-53 | -8.615850e-47 |
| Msa0149560 | Msa0311690 | 0.815246 | 1.020014e-51 | -8.615850e-47 |
| Msa0153420 | Msa0311690 | 0.818346 | 2.056803e-52 | -8.615850e-47 |
| Msa0173090 | Msa0311690 | 0.801354 | 9.366302e-49 | -8.615850e-47 |
| Msa0173990 | Msa0311690 | 0.814153 | 1.780832e-51 | -8.615850e-47 |
| Msa0176470 | Msa0311690 | 0.823256 | 1.527352e-53 | -8.615850e-47 |
| Msa0183750 | Msa0311690 | 0.829302 | 5.555588e-55 | -8.615850e-47 |
| Msa0191040 | Msa0311690 | 0.975791 | 1.319311e-140 | -8.615850e-47 |
| Msa0191250 | Msa0311690 | 0.801776 | 7.677410e-49 | -8.615850e-47 |
| Msa0197930 | Msa0311690 | 0.804369 | 2.232706e-49 | -8.615850e-47 |
| Msa0205850 | Msa0311690 | 0.801264 | 9.774909e-49 | -8.615850e-47 |
| Msa0206800 | Msa0311690 | 0.872704 | 2.592026e-67 | -8.615850e-47 |
| Msa0219190 | Msa0311690 | 0.823647 | 1.237495e-53 | -8.615850e-47 |
| Msa0220300 | Msa0311690 | 0.870175 | 1.780214e-66 | -8.615850e-47 |
| Msa0221090 | Msa0311690 | 0.840558 | 8.089064e-58 | -8.615850e-47 |
| Msa0225600 | Msa0311690 | 0.810899 | 9.163725e-51 | -8.615850e-47 |
| Msa0233340 | Msa0311690 | 0.975788 | 1.337638e-140 | -8.615850e-47 |
| Msa0234110 | Msa0311690 | 0.833687 | 4.622858e-56 | -8.615850e-47 |
| Msa0235890 | Msa0311690 | 0.823851 | 1.108793e-53 | -8.615850e-47 |
| Msa0236110 | Msa0311690 | 0.871544 | 6.304024e-67 | -8.615850e-47 |
| Msa0236440 | Msa0311690 | 0.828193 | 1.030051e-54 | -8.615850e-47 |
| Msa0243100 | Msa0311690 | 0.806611 | 7.562091e-50 | -8.615850e-47 |
| Msa0251240 | Msa0311690 | 0.863771 | 1.961676e-64 | -8.615850e-47 |
| Msa0261330 | Msa0311690 | 0.816631 | 5.005324e-52 | -8.615850e-47 |
| Msa0262560 | Msa0311690 | 0.815677 | 8.178376e-52 | -8.615850e-47 |
| Msa0266450 | Msa0311690 | 0.823885 | 1.088771e-53 | -8.615850e-47 |
| Msa0271040 | Msa0311690 | 0.822265 | 2.598477e-53 | -8.615850e-47 |
| Msa0273990 | Msa0311690 | 0.852416 | 4.682121e-61 | -8.615850e-47 |
| Msa0277290 | Msa0311690 | 0.821522 | 3.861563e-53 | -8.615850e-47 |
| Msa0287650 | Msa0311690 | 0.802848 | 4.618079e-49 | -8.615850e-47 |
| Msa0288190 | Msa0311690 | 0.882767 | 7.900446e-71 | -8.615850e-47 |
| Msa0288200 | Msa0311690 | 0.874036 | 9.242216e-68 | -8.615850e-47 |
| Msa0290010 | Msa0311690 | 0.823424 | 1.395339e-53 | -8.615850e-47 |
| Msa0298240 | Msa0311690 | 0.808502 | 3.001120e-50 | -8.615850e-47 |
| Msa0301200 | Msa0311690 | 0.882194 | 1.277593e-70 | -8.615850e-47 |
| Msa0309350 | Msa0311690 | 0.827105 | 1.880396e-54 | -8.615850e-47 |
| Msa0311690 | Msa0312840 | 0.805734 | 1.157188e-49 | -8.615850e-47 |
| Msa0311690 | Msa0312850 | 0.803550 | 3.304513e-49 | -8.615850e-47 |
| Msa0311690 | Msa0314630 | 0.870036 | 1.976509e-66 | -8.615850e-47 |
| Msa0311690 | Msa0315250 | 0.859628 | 3.626721e-63 | -8.615850e-47 |
| Msa0311690 | Msa0326540 | 0.890628 | 8.294505e-74 | -8.615850e-47 |
| Msa0311690 | Msa0331530 | 0.822794 | 1.957934e-53 | -8.615850e-47 |
| Msa0311690 | Msa0334500 | 0.818624 | 1.778799e-52 | -8.615850e-47 |
| Msa0311690 | Msa0371540 | 0.810040 | 1.404465e-50 | -8.615850e-47 |
| Msa0311690 | Msa0371560 | 0.829021 | 6.497515e-55 | -8.615850e-47 |
| Msa0311690 | Msa0373960 | 0.821261 | 4.434976e-53 | -8.615850e-47 |
| Msa0311690 | Msa0374850 | 0.842410 | 2.630956e-58 | -8.615850e-47 |
| Msa0311690 | Msa0375090 | 0.842016 | 3.345021e-58 | -8.615850e-47 |
| Msa0311690 | Msa0382010 | 0.808157 | 3.555695e-50 | -8.615850e-47 |
| Msa0311690 | Msa0407780 | 0.814905 | 1.214147e-51 | -8.615850e-47 |
| Msa0311690 | Msa0423100 | 0.805486 | 1.304151e-49 | -8.615850e-47 |
| Msa0311690 | Msa0426330 | 0.808122 | 3.617094e-50 | -8.615850e-47 |
| Msa0311690 | Msa0436500 | 0.807307 | 5.389378e-50 | -8.615850e-47 |
| Msa0311690 | Msa0462390 | 0.806162 | 9.402354e-50 | -8.615850e-47 |
| Msa0311690 | Msa0462430 | 0.806971 | 6.347785e-50 | -8.615850e-47 |
| Msa0311690 | Msa0470340 | 0.852539 | 4.321178e-61 | -8.615850e-47 |
| Msa0311690 | Msa0470860 | 0.811118 | 8.213627e-51 | -8.615850e-47 |
| Msa0311690 | Msa0473080 | 0.804975 | 1.668661e-49 | -8.615850e-47 |
| Msa0311690 | Msa0476590 | 0.808689 | 2.737571e-50 | -8.615850e-47 |
| Msa0311690 | Msa0480950 | 0.837670 | 4.533567e-57 | -8.615850e-47 |
| Msa0311690 | Msa0481110 | 0.835401 | 1.714302e-56 | -8.615850e-47 |
| Msa0311690 | Msa0490480 | 0.829792 | 4.222358e-55 | -8.615850e-47 |
| Msa0311690 | Msa0505360 | 0.808916 | 2.447579e-50 | -8.615850e-47 |
| Msa0311690 | Msa0517330 | 0.807799 | 4.236134e-50 | -8.615850e-47 |
| Msa0311690 | Msa0517340 | 0.800873 | 1.174854e-48 | -8.615850e-47 |
| Msa0311690 | Msa0520510 | 0.856246 | 3.663698e-62 | -8.615850e-47 |
| Msa0311690 | Msa0531430 | 0.880133 | 7.052258e-70 | -8.615850e-47 |
| Msa0311690 | Msa0532710 | 0.810647 | 1.038859e-50 | -8.615850e-47 |
| Msa0311690 | Msa0534570 | 0.892480 | 1.527158e-74 | -8.615850e-47 |
| Msa0311690 | Msa0534590 | 0.882762 | 7.938152e-71 | -8.615850e-47 |
| Msa0311690 | Msa0565600 | 0.823902 | 1.078854e-53 | -8.615850e-47 |
| Msa0311690 | Msa0575740 | 0.812991 | 3.208910e-51 | -8.615850e-47 |
| Msa0311690 | Msa0577620 | 0.804993 | 1.654480e-49 | -8.615850e-47 |
| Msa0311690 | Msa0590800 | 0.882049 | 1.442127e-70 | -8.615850e-47 |
| Msa0311690 | Msa0606360 | 0.809881 | 1.519380e-50 | -8.615850e-47 |
| Msa0311690 | Msa0611380 | 0.863929 | 1.752852e-64 | -8.615850e-47 |
| Msa0311690 | Msa0618180 | 0.802076 | 6.661016e-49 | -8.615850e-47 |
| Msa0311690 | Msa0618220 | 0.802017 | 6.848327e-49 | -8.615850e-47 |
| Msa0311690 | Msa0618290 | 0.803521 | 3.349856e-49 | -8.615850e-47 |
| Msa0311690 | Msa0619980 | 0.813814 | 2.115480e-51 | -8.615850e-47 |
| Msa0311690 | Msa0619990 | 0.820957 | 5.212570e-53 | -8.615850e-47 |
| Msa0311690 | Msa0622410 | 0.814752 | 1.312547e-51 | -8.615850e-47 |
| Msa0311690 | Msa0625890 | 0.805562 | 1.257387e-49 | -8.615850e-47 |
| Msa0311690 | Msa0628640 | 0.865691 | 4.914361e-65 | -8.615850e-47 |
| Msa0311690 | Msa0631120 | 0.879966 | 8.091970e-70 | -8.615850e-47 |
| Msa0311690 | Msa0663680 | 0.811728 | 6.055402e-51 | -8.615850e-47 |
| Msa0311690 | Msa0666030 | 0.870885 | 1.040301e-66 | -8.615850e-47 |
| Msa0311690 | Msa0667850 | 0.813777 | 2.155684e-51 | -8.615850e-47 |
| Msa0311690 | Msa0669340 | 0.872473 | 3.096164e-67 | -8.615850e-47 |
| Msa0311690 | Msa0701970 | 0.802289 | 6.020876e-49 | -8.615850e-47 |
| Msa0311690 | Msa0706370 | 0.825580 | 4.338781e-54 | -8.615850e-47 |
| Msa0311690 | Msa0706420 | 0.808647 | 2.794886e-50 | -8.615850e-47 |
| Msa0311690 | Msa0716450 | 0.854226 | 1.416877e-61 | -8.615850e-47 |
| Msa0311690 | Msa0717260 | 0.862365 | 5.335462e-64 | -8.615850e-47 |
| Msa0311690 | Msa0717670 | 0.840647 | 7.666183e-58 | -8.615850e-47 |
| Msa0311690 | Msa0734230 | 0.830737 | 2.480586e-55 | -8.615850e-47 |
| Msa0311690 | Msa0741900 | 0.838027 | 3.669138e-57 | -8.615850e-47 |
| Msa0311690 | Msa0754370 | 0.810339 | 1.210622e-50 | -8.615850e-47 |
| Msa0311690 | Msa0758320 | 0.851623 | 7.869444e-61 | -8.615850e-47 |
| Msa0311690 | Msa0772020 | 0.806367 | 8.515056e-50 | -8.615850e-47 |
| Msa0311690 | Msa0775440 | 0.835106 | 2.035401e-56 | -8.615850e-47 |
| Msa0311690 | Msa0787260 | 0.803116 | 4.064294e-49 | -8.615850e-47 |
| Msa0311690 | Msa0795690 | 0.810480 | 1.128974e-50 | -8.615850e-47 |
| Msa0311690 | Msa0799030 | 0.852576 | 4.215571e-61 | -8.615850e-47 |
| Msa0311690 | Msa0799700 | 0.829228 | 5.788294e-55 | -8.615850e-47 |
| Msa0311690 | Msa0810020 | 0.866833 | 2.135898e-65 | -8.615850e-47 |
| Msa0311690 | Msa0812820 | 0.860954 | 1.440374e-63 | -8.615850e-47 |
| Msa0311690 | Msa0819680 | 0.814165 | 1.769944e-51 | -8.615850e-47 |
| Msa0311690 | Msa0822990 | 0.817680 | 2.907788e-52 | -8.615850e-47 |
| Msa0311690 | Msa0823400 | 0.801512 | 8.694582e-49 | -8.615850e-47 |
| Msa0311690 | Msa0833340 | 0.804348 | 2.255940e-49 | -8.615850e-47 |
| Msa0311690 | Msa0837440 | 0.852050 | 5.952288e-61 | -8.615850e-47 |
| Msa0311690 | Msa0837980 | 0.852263 | 5.177537e-61 | -8.615850e-47 |
| Msa0311690 | Msa0850500 | 0.819065 | 1.412586e-52 | -8.615850e-47 |
| Msa0311690 | Msa0853320 | 0.869093 | 4.007009e-66 | -8.615850e-47 |
| Msa0311690 | Msa0858840 | 0.832233 | 1.062697e-55 | -8.615850e-47 |
| Msa0311690 | Msa0862100 | 0.842455 | 2.559780e-58 | -8.615850e-47 |
| Msa0311690 | Msa0870620 | 0.819657 | 1.035376e-52 | -8.615850e-47 |
| Msa0311690 | Msa0870690 | 0.836255 | 1.041861e-56 | -8.615850e-47 |
| Msa0311690 | Msa0880710 | 0.867543 | 1.266629e-65 | -8.615850e-47 |
| Msa0311690 | Msa0885060 | 0.843045 | 1.783836e-58 | -8.615850e-47 |
| Msa0311690 | Msa0886980 | 0.819891 | 9.151624e-53 | -8.615850e-47 |
| Msa0311690 | Msa0933230 | 0.807148 | 5.821966e-50 | -8.615850e-47 |
| Msa0311690 | Msa0933310 | 0.808131 | 3.600042e-50 | -8.615850e-47 |
| Msa0311690 | Msa0951710 | 0.820968 | 5.182339e-53 | -8.615850e-47 |
| Msa0311690 | Msa0971090 | 0.802780 | 4.769539e-49 | -8.615850e-47 |
| Msa0311690 | Msa0973250 | 0.811319 | 7.430002e-51 | -8.615850e-47 |
| Msa0311690 | Msa0979510 | 0.862318 | 5.515583e-64 | -8.615850e-47 |
| Msa0311690 | Msa0981010 | 0.812213 | 4.748135e-51 | -8.615850e-47 |
| Msa0311690 | Msa0988480 | 0.812400 | 4.322397e-51 | -8.615850e-47 |
| Msa0311690 | Msa1002620 | 0.851484 | 8.611621e-61 | -8.615850e-47 |
| Msa0311690 | Msa1009000 | 0.801066 | 1.073156e-48 | -8.615850e-47 |
| Msa0311690 | Msa1010110 | 0.818725 | 1.687298e-52 | -8.615850e-47 |
| Msa0311690 | Msa1033560 | 0.864351 | 1.294155e-64 | -8.615850e-47 |
| Msa0311690 | Msa1042670 | 0.810582 | 1.072953e-50 | -8.615850e-47 |
| Msa0311690 | Msa1069100 | 0.801417 | 9.091492e-49 | -8.615850e-47 |
| Msa0311690 | Msa1073340 | 0.845931 | 2.985375e-59 | -8.615850e-47 |
| Msa0311690 | Msa1073350 | 0.868387 | 6.782579e-66 | -8.615850e-47 |
| Msa0311690 | Msa1098560 | 0.819104 | 1.383739e-52 | -8.615850e-47 |
| Msa0311690 | Msa1113850 | 0.873348 | 1.576957e-67 | -8.615850e-47 |
| Msa0311690 | Msa1160400 | 0.863981 | 1.688307e-64 | -8.615850e-47 |
| Msa0311690 | Msa1172670 | 0.820400 | 6.998765e-53 | -8.615850e-47 |
| Msa0311690 | Msa1203000 | 0.844864 | 5.805036e-59 | -8.615850e-47 |
| Msa0311690 | Msa1211550 | 0.837785 | 4.234486e-57 | -8.615850e-47 |
| Msa0311690 | Msa1214880 | 0.802589 | 5.220909e-49 | -8.615850e-47 |
| Msa0311690 | Msa1214890 | 0.825138 | 5.519998e-54 | -8.615850e-47 |
| Msa0311690 | Msa1217810 | 0.800414 | 1.457486e-48 | -8.615850e-47 |
| Msa0311690 | Msa1217940 | 0.851436 | 8.885444e-61 | -8.615850e-47 |
| Msa0311690 | Msa1218480 | 0.862470 | 4.953926e-64 | -8.615850e-47 |
| Msa0311690 | Msa1219260 | 0.826117 | 3.234805e-54 | -8.615850e-47 |
| Msa0311690 | Msa1227950 | 0.807781 | 4.274878e-50 | -8.615850e-47 |
| Msa0311690 | Msa1227970 | 0.821314 | 4.312270e-53 | -8.615850e-47 |
| Msa0311690 | Msa1228610 | 0.809389 | 1.938157e-50 | -8.615850e-47 |
| Msa0311690 | Msa1254700 | 0.811564 | 6.574311e-51 | -8.615850e-47 |
| Msa0311690 | Msa1255280 | 0.832575 | 8.743155e-56 | -8.615850e-47 |
| Msa0311690 | Msa1258050 | 0.836469 | 9.190994e-57 | -8.615850e-47 |
| Msa0311690 | Msa1266960 | 0.817757 | 2.794198e-52 | -8.615850e-47 |
| Msa0311690 | Msa1271260 | 0.803231 | 3.847227e-49 | -8.615850e-47 |
| Msa0311690 | Msa1289280 | 0.814391 | 1.578328e-51 | -8.615850e-47 |
| Msa0311690 | Msa1300870 | 0.817709 | 2.865616e-52 | -8.615850e-47 |
| Msa0311690 | Msa1327320 | 0.801348 | 9.396270e-49 | -8.615850e-47 |
| Msa0311690 | Msa1331910 | 0.835076 | 2.071549e-56 | -8.615850e-47 |
| Msa0311690 | Msa1331920 | 0.811136 | 8.139831e-51 | -8.615850e-47 |
| Msa0311690 | Msa1339940 | 0.824812 | 6.588573e-54 | -8.615850e-47 |
| Msa0311690 | Msa1343320 | 0.820249 | 7.577621e-53 | -8.615850e-47 |
| Msa0311690 | Msa1345420 | 0.848114 | 7.533756e-60 | -8.615850e-47 |
| Msa0311690 | Msa1369700 | 0.822037 | 2.934902e-53 | -8.615850e-47 |
| Msa0311690 | Msa1390850 | 0.858235 | 9.470462e-63 | -8.615850e-47 |
| Msa0311690 | Msa1395870 | 0.806157 | 9.427715e-50 | -8.615850e-47 |
| Msa0311690 | Msa1397250 | 0.818309 | 2.096632e-52 | -8.615850e-47 |
| Msa0311690 | Msa1397340 | 0.824207 | 9.145250e-54 | -8.615850e-47 |
| Msa0311690 | Msa1399560 | 0.826842 | 2.173035e-54 | -8.615850e-47 |
| Msa0311690 | Msa1401150 | 0.823199 | 1.574817e-53 | -8.615850e-47 |
| Msa0311690 | Msa1403970 | 0.803489 | 3.401398e-49 | -8.615850e-47 |
| Msa0311690 | Msa1405180 | 0.804167 | 2.459874e-49 | -8.615850e-47 |
| Msa0311690 | Msa1420060 | 0.830084 | 3.583813e-55 | -8.615850e-47 |
| Msa0311690 | Msa1421550 | 0.805135 | 1.544943e-49 | -8.615850e-47 |
| Msa0311690 | Msa1425010 | 0.801715 | 7.899679e-49 | -8.615850e-47 |
| Msa0311690 | Msa1429420 | 0.814934 | 1.196592e-51 | -8.615850e-47 |
| Msa0311690 | Msa1437190 | 0.830928 | 2.227044e-55 | -8.615850e-47 |
| Msa0311690 | Msa1440340 | 0.869007 | 4.275024e-66 | -8.615850e-47 |
| Msa0311690 | Msa1442630 | 0.806762 | 7.028618e-50 | -8.615850e-47 |
| Msa0311690 | Msa1443840 | 0.833274 | 5.860970e-56 | -8.615850e-47 |
| Msa0311690 | Msa1449730 | 0.800599 | 1.336213e-48 | -8.615850e-47 |
| Msa0311690 | Msa1452060 | 0.825830 | 3.785218e-54 | -8.615850e-47 |
| Msa0311690 | Msa1460380 | 0.837273 | 5.727523e-57 | -8.615850e-47 |
| Msa0311690 | Msa1463670 | 0.809776 | 1.600943e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311690 | MtrunA17_Chr2g0280881 | 99.153 | 118 | 1 | 0 | 1 | 118 | 1 | 118 | 2.47e-82 | 236 |
| Msa0311690 | MtrunA17_Chr2g0323211 | 64.151 | 106 | 38 | 0 | 9 | 114 | 5 | 110 | 8.65e-44 | 139 |
| Msa0311690 | MtrunA17_Chr2g0318861 | 59.649 | 114 | 42 | 1 | 1 | 114 | 1 | 110 | 1.71e-40 | 130 |
| Msa0311690 | MtrunA17_Chr8g0361421 | 59.091 | 110 | 45 | 0 | 5 | 114 | 2 | 111 | 2.75e-39 | 127 |
| Msa0311690 | MtrunA17_Chr2g0318791 | 61.905 | 105 | 33 | 2 | 14 | 118 | 9 | 106 | 2.51e-38 | 125 |
| Msa0311690 | MtrunA17_Chr4g0023231 | 59.406 | 101 | 41 | 0 | 14 | 114 | 6 | 106 | 2.52e-38 | 125 |
| Msa0311690 | MtrunA17_Chr2g0318761 | 65.957 | 94 | 31 | 1 | 14 | 107 | 5 | 97 | 4.30e-38 | 124 |
| Msa0311690 | MtrunA17_Chr2g0318801 | 63.830 | 94 | 33 | 1 | 14 | 107 | 9 | 101 | 7.75e-36 | 119 |
| Msa0311690 | MtrunA17_Chr8g0346481 | 56.436 | 101 | 44 | 0 | 14 | 114 | 19 | 119 | 1.21e-35 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311690 | AT4G27280.1 | 58.824 | 102 | 41 | 1 | 14 | 114 | 19 | 120 | 8.55e-38 | 124 |
| Msa0311690 | AT5G54490.1 | 55.882 | 102 | 44 | 1 | 14 | 114 | 19 | 120 | 1.15e-35 | 119 |
| Msa0311690 | AT2G46600.1 | 52.475 | 101 | 48 | 0 | 14 | 114 | 22 | 122 | 4.54e-34 | 115 |
Find 26 sgRNAs with CRISPR-Local
Find 32 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCAATGATGGAGAAAT+TGG | 0.086263 | 2_4:+6593687 | Msa0311690:CDS |
| AACCGATCCACCATTCTTCT+TGG | 0.251298 | 2_4:-6593647 | None:intergenic |
| GAGTGACTCTAAGCAACTTT+TGG | 0.324838 | 2_4:+6593942 | Msa0311690:CDS |
| CCCAATTTCTCCATCATTGA+AGG | 0.334569 | 2_4:-6593688 | None:intergenic |
| CCTTCAATGATGGAGAAATT+GGG | 0.434103 | 2_4:+6593688 | Msa0311690:CDS |
| AAACTCTGCATTGCTTGGGT+TGG | 0.475429 | 2_4:+6593801 | Msa0311690:CDS |
| CTAAGAGAAGGTGATATTGA+TGG | 0.479725 | 2_4:+6593856 | Msa0311690:CDS |
| GGGAAGTGAAGGGTTTATGA+AGG | 0.496833 | 2_4:+6593708 | Msa0311690:CDS |
| TCTGCATTGCTTGGGTTGGA+AGG | 0.497566 | 2_4:+6593805 | Msa0311690:CDS |
| GGACTACTTCCCTTCAATGA+TGG | 0.499786 | 2_4:+6593678 | Msa0311690:CDS |
| TTTATGAAGGAGTTGGCAAA+TGG | 0.508232 | 2_4:+6593721 | Msa0311690:CDS |
| TAAGAGAAGGTGATATTGAT+GGG | 0.513310 | 2_4:+6593857 | Msa0311690:CDS |
| GAAGGTGATATTGATGGGGA+TGG | 0.523087 | 2_4:+6593862 | Msa0311690:CDS |
| TGAAGGGTTTATGAAGGAGT+TGG | 0.524979 | 2_4:+6593714 | Msa0311690:CDS |
| CCAATTTCTCCATCATTGAA+GGG | 0.539401 | 2_4:-6593687 | None:intergenic |
| ATGGAGAAATTGGGAAGTGA+AGG | 0.543176 | 2_4:+6593697 | Msa0311690:CDS |
| GCGTCGAGTTCCAAGAAGAA+TGG | 0.562292 | 2_4:+6593637 | Msa0311690:CDS |
| GGATGGAGCTCTTAATGAGA+TGG | 0.581359 | 2_4:+6593879 | Msa0311690:CDS |
| TGGAGAAATTGGGAAGTGAA+GGG | 0.582244 | 2_4:+6593698 | Msa0311690:CDS |
| TTAGAGTCACTCATCAAAGC+AGG | 0.587443 | 2_4:-6593931 | None:intergenic |
| TTCCAAGAAGAATGGTGGAT+CGG | 0.596507 | 2_4:+6593645 | Msa0311690:CDS |
| CAGGACTCAACCTAAACATG+AGG | 0.616612 | 2_4:-6593912 | None:intergenic |
| ATTACTTGCATGCTAAGAGA+AGG | 0.617118 | 2_4:+6593844 | Msa0311690:CDS |
| TCGAGTTCCAAGAAGAATGG+TGG | 0.624651 | 2_4:+6593640 | Msa0311690:CDS |
| AAGAGAAGGTGATATTGATG+GGG | 0.671155 | 2_4:+6593858 | Msa0311690:CDS |
| AGGACTCAACCTAAACATGA+GGG | 0.684724 | 2_4:-6593911 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGGTTTTAATGTGTTGA+TGG | + | chr2_4:6593738-6593757 | Msa0311690:CDS | 25.0% |
| TAAGAGAAGGTGATATTGAT+GGG | + | chr2_4:6593857-6593876 | Msa0311690:CDS | 30.0% | |
| CCAATTTCTCCATCATTGAA+GGG | - | chr2_4:6593690-6593709 | None:intergenic | 35.0% | |
| ! | CCTTCAATGATGGAGAAATT+GGG | + | chr2_4:6593688-6593707 | Msa0311690:CDS | 35.0% |
| TTTATGAAGGAGTTGGCAAA+TGG | + | chr2_4:6593721-6593740 | Msa0311690:CDS | 35.0% | |
| AAGAAAAACTCTGCATTGCT+TGG | + | chr2_4:6593796-6593815 | Msa0311690:CDS | 35.0% | |
| AGAAAAACTCTGCATTGCTT+GGG | + | chr2_4:6593797-6593816 | Msa0311690:CDS | 35.0% | |
| ATTACTTGCATGCTAAGAGA+AGG | + | chr2_4:6593844-6593863 | Msa0311690:CDS | 35.0% | |
| CTAAGAGAAGGTGATATTGA+TGG | + | chr2_4:6593856-6593875 | Msa0311690:CDS | 35.0% | |
| AAGAGAAGGTGATATTGATG+GGG | + | chr2_4:6593858-6593877 | Msa0311690:CDS | 35.0% | |
| !! | TTGGAAGAAGCTATTTTCAC+TGG | + | chr2_4:6593961-6593980 | Msa0311690:CDS | 35.0% |
| !! | TTCCAAGAAGAATGGTGGAT+CGG | + | chr2_4:6593645-6593664 | Msa0311690:CDS | 40.0% |
| ! | CCCTTCAATGATGGAGAAAT+TGG | + | chr2_4:6593687-6593706 | Msa0311690:CDS | 40.0% |
| CCCAATTTCTCCATCATTGA+AGG | - | chr2_4:6593691-6593710 | None:intergenic | 40.0% | |
| ATGGAGAAATTGGGAAGTGA+AGG | + | chr2_4:6593697-6593716 | Msa0311690:CDS | 40.0% | |
| TGGAGAAATTGGGAAGTGAA+GGG | + | chr2_4:6593698-6593717 | Msa0311690:CDS | 40.0% | |
| TGAAGGGTTTATGAAGGAGT+TGG | + | chr2_4:6593714-6593733 | Msa0311690:CDS | 40.0% | |
| ! | AGTTTTGCACCCTCATGTTT+AGG | + | chr2_4:6593902-6593921 | Msa0311690:CDS | 40.0% |
| AGGACTCAACCTAAACATGA+GGG | - | chr2_4:6593914-6593933 | None:intergenic | 40.0% | |
| TTAGAGTCACTCATCAAAGC+AGG | - | chr2_4:6593934-6593953 | None:intergenic | 40.0% | |
| ! | GAGTGACTCTAAGCAACTTT+TGG | + | chr2_4:6593942-6593961 | Msa0311690:CDS | 40.0% |
| TCGAGTTCCAAGAAGAATGG+TGG | + | chr2_4:6593640-6593659 | Msa0311690:CDS | 45.0% | |
| AACCGATCCACCATTCTTCT+TGG | - | chr2_4:6593650-6593669 | None:intergenic | 45.0% | |
| !!! | TGGTGGATCGGTTGTTTTTG+AGG | + | chr2_4:6593657-6593676 | Msa0311690:CDS | 45.0% |
| GGACTACTTCCCTTCAATGA+TGG | + | chr2_4:6593678-6593697 | Msa0311690:CDS | 45.0% | |
| GGGAAGTGAAGGGTTTATGA+AGG | + | chr2_4:6593708-6593727 | Msa0311690:CDS | 45.0% | |
| AAACTCTGCATTGCTTGGGT+TGG | + | chr2_4:6593801-6593820 | Msa0311690:CDS | 45.0% | |
| GAAGGTGATATTGATGGGGA+TGG | + | chr2_4:6593862-6593881 | Msa0311690:CDS | 45.0% | |
| GGATGGAGCTCTTAATGAGA+TGG | + | chr2_4:6593879-6593898 | Msa0311690:CDS | 45.0% | |
| CAGGACTCAACCTAAACATG+AGG | - | chr2_4:6593915-6593934 | None:intergenic | 45.0% | |
| GCGTCGAGTTCCAAGAAGAA+TGG | + | chr2_4:6593637-6593656 | Msa0311690:CDS | 50.0% | |
| !! | TCTGCATTGCTTGGGTTGGA+AGG | + | chr2_4:6593805-6593824 | Msa0311690:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 6593634 | 6593990 | 6593634 | ID=Msa0311690;Name=Msa0311690 |
| chr2_4 | mRNA | 6593634 | 6593990 | 6593634 | ID=Msa0311690-mRNA-1;Parent=Msa0311690;Name=Msa0311690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|118 |
| chr2_4 | exon | 6593634 | 6593990 | 6593634 | ID=Msa0311690-mRNA-1:exon:2541;Parent=Msa0311690-mRNA-1 |
| chr2_4 | CDS | 6593634 | 6593990 | 6593634 | ID=Msa0311690-mRNA-1:cds;Parent=Msa0311690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
